assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000008585.1_ASM858v1	NC_002755	Mycobacterium tuberculosis CDC1551, complete sequence	1	366525-367223	1	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TTCGCGAAGCCGATGTTGTAGCTGCCGGTGTTG	33	2	2	366813-366854|366888-366920	NC_002755.2_374844-374885|NC_002755.2_373659-373691	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|101aa|up_4|NC_002755.2_363537_363840_+,NA|161aa|down_1|NC_002755.2_376633_377116_-,NA|410aa|down_5|NC_002755.2_379232_380462_+	NA|262aa|up_9|NC_002755.2_358232_359018_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_8|NC_002755.2_359006_359810_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_7|NC_002755.2_359819_361217_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|592aa|up_6|NC_002755.2_361395_363171_+	pfam00934, PE, PE family	NA|76aa|up_5|NC_002755.2_363313_363541_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|101aa|up_4|NC_002755.2_363537_363840_+	NA	NA|74aa|up_3|NC_002755.2_363887_364109_+	PHA01748, PHA01748, hypothetical protein	NA|142aa|up_2|NC_002755.2_364105_364531_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|211aa|up_1|NC_002755.2_364666_365299_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|303aa|up_0|NC_002755.2_365295_366204_+	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|224aa|down_0|NC_002755.2_375974_376646_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_1|NC_002755.2_376633_377116_-	NA	NA|239aa|down_2|NC_002755.2_377173_377890_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_3|NC_002755.2_377991_378648_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_4|NC_002755.2_378717_379209_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|410aa|down_5|NC_002755.2_379232_380462_+	NA	NA|621aa|down_6|NC_002755.2_380616_382479_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_7|NC_002755.2_382550_382937_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|295aa|down_8|NC_002755.2_383661_384546_+	COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]	NA|205aa|down_9|NC_002755.2_384594_385209_+	COG4829, CatC1, Muconolactone delta-isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_000008585.1_ASM858v1	NC_002755	Mycobacterium tuberculosis CDC1551, complete sequence	2	693473-693549	2	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|164aa|up_8|NC_002755.2_678575_679067_-,NA	NA|253aa|up_9|NC_002755.2_677688_678447_+	pfam01927, Mut7-C, Mut7-C RNAse domain	NA|164aa|up_8|NC_002755.2_678575_679067_-	NA	NA|72aa|up_7|NC_002755.2_679160_679376_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|136aa|up_6|NC_002755.2_679372_679780_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_5|NC_002755.2_679839_680526_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_4|NC_002755.2_680679_683313_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|241aa|up_3|NC_002755.2_685858_686581_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_2|NC_002755.2_686577_687375_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_1|NC_002755.2_687376_688264_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_0|NC_002755.2_688269_689484_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|517aa|down_0|NC_002755.2_694684_696235_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NC_002755.2_696286_696679_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NC_002755.2_696675_696933_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NC_002755.2_697115_698351_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NC_002755.2_698601_699015_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NC_002755.2_699011_699248_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NC_002755.2_699351_699858_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|177aa|down_7|NC_002755.2_699971_700502_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NC_002755.2_700485_701247_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NC_002755.2_701303_701615_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_000008585.1_ASM858v1	NC_002755	Mycobacterium tuberculosis CDC1551, complete sequence	3	926529-927476	1	CRT	no	csa3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	CGGGGCCGGCGGNNCCGGCGG	21	1	3	927312-927347|927312-927347|927312-927347	NC_002755.2_676579-676544|NC_002755.2_1213950-1213985|NC_002755.2_2422484-2422449	NA	19	19	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|184aa|down_2|NC_002755.2_931477_932029_-	NA|685aa|up_9|NC_002755.2_914165_916220_-	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain	NA|390aa|up_8|NC_002755.2_916385_917555_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_7|NC_002755.2_917642_918659_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_6|NC_002755.2_918820_919462_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_5|NC_002755.2_919542_920598_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_4|NC_002755.2_920649_921042_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_3|NC_002755.2_921099_921522_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|302aa|up_2|NC_002755.2_921878_922784_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_1|NC_002755.2_922802_923618_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|138aa|up_0|NC_002755.2_924859_925273_+	pfam00934, PE, PE family	NA|880aa|down_0|NC_002755.2_927745_930385_-	pfam00934, PE, PE family	NA|215aa|down_1|NC_002755.2_930852_931497_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_2|NC_002755.2_931477_932029_-	NA	NA|218aa|down_3|NC_002755.2_932178_932832_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_4|NC_002755.2_932902_933931_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|257aa|down_5|NC_002755.2_934619_935390_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_6|NC_002755.2_935476_936289_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_7|NC_002755.2_936356_937217_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|431aa|down_8|NC_002755.2_938011_939304_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|335aa|down_9|NC_002755.2_939287_940292_+	COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
GCF_000008585.1_ASM858v1	NC_002755	Mycobacterium tuberculosis CDC1551, complete sequence	4	964585-964836	1	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CGGGTGGTGCCAGGTCGGCGGGCGCGGGTGGCGCCAGTTCGGCGGGCGCGGGTGGCGCCAGGT	63	1	1	964758-964813	NC_002755.2_964886-964941	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|67aa|up_3|NC_002755.2_962683_962884_+,NA	NA|151aa|up_9|NC_002755.2_953175_953628_+	cd07819, SRPBCC_2, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|398aa|up_8|NC_002755.2_953624_954818_-	PRK07777, PRK07777, putative succinyldiaminopimelate transaminase DapC	NA|404aa|up_7|NC_002755.2_954974_956186_+	PRK08242, PRK08242, acetyl-CoA C-acetyltransferase	NA|721aa|up_6|NC_002755.2_956190_958353_+	PRK11730, fadB, fatty acid oxidation complex subunit alpha FadB	NA|550aa|up_5|NC_002755.2_958420_960070_-	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|757aa|up_4|NC_002755.2_960345_962616_-	pfam13625, Helicase_C_3, Helicase conserved C-terminal domain	NA|67aa|up_3|NC_002755.2_962683_962884_+	NA	NA|168aa|up_2|NC_002755.2_962893_963397_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|161aa|up_1|NC_002755.2_963393_963876_+	cd00886, MogA_MoaB, MogA_MoaB family	NA|142aa|up_0|NC_002755.2_963872_964298_+	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|93aa|down_0|NC_002755.2_965986_966265_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|361aa|down_1|NC_002755.2_966268_967351_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|130aa|down_2|NC_002755.2_967347_967737_-	PRK11770, PRK11770, YccF domain-containing protein	NA|136aa|down_3|NC_002755.2_967901_968309_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|610aa|down_4|NC_002755.2_968427_970257_-	pfam00934, PE, PE family	NA|651aa|down_5|NC_002755.2_970517_972470_+	cd01161, VLCAD, Very long chain acyl-CoA dehydrogenase	NA|163aa|down_6|NC_002755.2_973817_974306_-	pfam10969, DUF2771, Protein of unknown function (DUF2771)	NA|549aa|down_7|NC_002755.2_974302_975949_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|263aa|down_8|NC_002755.2_976086_976875_+	pfam11228, DUF3027, Protein of unknown function (DUF3027)	NA|444aa|down_9|NC_002755.2_976883_978215_-	pfam00823, PPE, PPE family
GCF_000008585.1_ASM858v1	NC_002755	Mycobacterium tuberculosis CDC1551, complete sequence	5	1191362-1191470	3	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GACAGCCAGCCGGCTGACCCGCCGT	25	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|544aa|up_9|NC_002755.2_1180729_1182361_+	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles	NA|355aa|up_8|NC_002755.2_1182436_1183501_+	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|158aa|up_7|NC_002755.2_1183553_1184027_+	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|up_6|NC_002755.2_1184060_1184924_+	cd01908, YafJ, Glutamine amidotransferases class-II (Gn-AT)_YafJ-type	NA|286aa|up_5|NC_002755.2_1184928_1185786_+	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|361aa|up_4|NC_002755.2_1185786_1186869_-	cd07228, Pat_NTE_like_bacteria, Bacterial patatin-like phospholipase domain containing protein 6	NA|140aa|up_3|NC_002755.2_1186949_1187369_-	pfam17301, LpqV, Putative lipoprotein LpqV	NA|189aa|up_2|NC_002755.2_1187480_1188047_+	cd10548, cupin_CDO, cysteine dioxygenase, cupin domain	NA|132aa|up_1|NC_002755.2_1188043_1188439_+	cd01447, Polysulfide_ST, Polysulfide-sulfurtransferase - Rhodanese Homology Domain	NA|668aa|up_0|NC_002755.2_1188466_1190470_-	pfam00934, PE, PE family	NA|258aa|down_0|NC_002755.2_1194504_1195278_-	PRK05862, PRK05862, enoyl-CoA hydratase; Provisional	NA|346aa|down_1|NC_002755.2_1195289_1196327_-	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional	NA|279aa|down_2|NC_002755.2_1196513_1197350_+	COG4760, COG4760, Predicted membrane protein [Function unknown]	NA|284aa|down_3|NC_002755.2_1197465_1198317_+	pfam18741, MTES_1575, REase_MTES_1575	NA|406aa|down_4|NC_002755.2_1198390_1199608_-	PRK07851, PRK07851, acetyl-CoA C-acetyltransferase	NA|315aa|down_5|NC_002755.2_1199660_1200605_-	cd01836, FeeA_FeeB_like, SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases	NA|298aa|down_6|NC_002755.2_1201001_1201895_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|465aa|down_7|NC_002755.2_1201951_1203346_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|down_8|NC_002755.2_1203547_1204270_+	pfam06271, RDD, RDD family	NA|389aa|down_9|NC_002755.2_1204301_1205468_+	PRK07811, PRK07811, cystathionine gamma-synthase; Provisional
GCF_000008585.1_ASM858v1	NC_002755	Mycobacterium tuberculosis CDC1551, complete sequence	6	1212185-1213052	4	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GGCGGTGTCGGCGGTGCCGGCGG	23	4	114	1212331-1212352|1212331-1212352|1212331-1212352|1212331-1212352|1212331-1212352|1212331-1212352|1212331-1212352|1212331-1212352|1212331-1212352|1212331-1212352|1212331-1212352|1212331-1212352|1212331-1212352|1212331-1212352|1212331-1212352|1212331-1212352|1212331-1212352|1212331-1212352|1212331-1212352|1212331-1212352|1212331-1212352|1212331-1212352|1212331-1212352|1212331-1212352|1212331-1212352|1212331-1212352|1212331-1212352|1212331-1212352|1212331-1212352|1212331-1212352|1212331-1212352|1212331-1212352|1212331-1212352|1212331-1212352|1212331-1212352|1212331-1212352|1212480-1212501|1212480-1212501|1212480-1212501|1212480-1212501|1212480-1212501|1212480-1212501|1212480-1212501|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212789-1212807|1212963-1212984|1212963-1212984|1212963-1212984|1212963-1212984	NC_002755.2_2918414-2918435|NC_002755.2_3934077-3934098|NC_002755.2_335969-335948|NC_002755.2_338698-338677|NC_002755.2_1217134-1217155|NC_002755.2_1632910-1632889|NC_002755.2_1636278-1636257|NC_002755.2_3793859-3793880|NC_002755.2_3927993-3928014|NC_002755.2_3929235-3929256|NC_002755.2_3936390-3936411|NC_002755.2_3942281-3942302|NC_002755.2_335333-335312|NC_002755.2_675973-675952|NC_002755.2_676765-676744|NC_002755.2_841089-841110|NC_002755.2_842547-842568|NC_002755.2_1855840-1855819|NC_002755.2_1989815-1989794|NC_002755.2_2086034-2086013|NC_002755.2_2800702-2800681|NC_002755.2_2940110-2940089|NC_002755.2_3732624-3732603|NC_002755.2_3793916-3793937|NC_002755.2_3921607-3921628|NC_002755.2_3922615-3922636|NC_002755.2_3923722-3923743|NC_002755.2_3924271-3924292|NC_002755.2_3924298-3924319|NC_002755.2_3927399-3927420|NC_002755.2_3928038-3928059|NC_002755.2_3928638-3928659|NC_002755.2_3928674-3928695|NC_002755.2_3929271-3929292|NC_002755.2_3936930-3936951|NC_002755.2_3942449-3942470|NC_002755.2_362736-362757|NC_002755.2_928037-928016|NC_002755.2_929393-929372|NC_002755.2_1191709-1191688|NC_002755.2_1854670-1854649|NC_002755.2_2799451-2799430|NC_002755.2_2919035-2919056|NC_002755.2_676243-676225|NC_002755.2_1213632-1213650|NC_002755.2_1630579-1630561|NC_002755.2_1633432-1633414|NC_002755.2_1988645-1988627|NC_002755.2_2058974-2058956|NC_002755.2_2059421-2059403|NC_002755.2_2797594-2797576|NC_002755.2_2801122-2801104|NC_002755.2_150174-150192|NC_002755.2_150327-150345|NC_002755.2_333896-333878|NC_002755.2_335315-335297|NC_002755.2_335768-335750|NC_002755.2_335819-335801|NC_002755.2_335828-335810|NC_002755.2_338065-338047|NC_002755.2_338194-338176|NC_002755.2_338461-338443|NC_002755.2_338490-338508|NC_002755.2_338584-338566|NC_002755.2_363115-363097|NC_002755.2_443515-443497|NC_002755.2_548218-548200|NC_002755.2_625434-625452|NC_002755.2_625656-625674|NC_002755.2_675409-675391|NC_002755.2_842358-842376|NC_002755.2_1090994-1091012|NC_002755.2_1091642-1091660|NC_002755.2_1095714-1095696|NC_002755.2_1213161-1213179|NC_002755.2_1213551-1213569|NC_002755.2_1213839-1213857|NC_002755.2_1213857-1213875|NC_002755.2_1490424-1490406|NC_002755.2_1618545-1618527|NC_002755.2_1618997-1618979|NC_002755.2_1636152-1636134|NC_002755.2_1636161-1636143|NC_002755.2_1855231-1855213|NC_002755.2_1855759-1855741|NC_002755.2_1987919-1987901|NC_002755.2_1998881-1998899|NC_002755.2_2086043-2086025|NC_002755.2_2305844-2305826|NC_002755.2_2359231-2359213|NC_002755.2_2418310-2418328|NC_002755.2_2422397-2422379|NC_002755.2_2565045-2565027|NC_002755.2_2690828-2690846|NC_002755.2_2790909-2790891|NC_002755.2_2791491-2791473|NC_002755.2_3049530-3049548|NC_002755.2_3049629-3049647|NC_002755.2_3700402-3700420|NC_002755.2_3729815-3729797|NC_002755.2_3793229-3793247|NC_002755.2_3793412-3793430|NC_002755.2_3793580-3793598|NC_002755.2_3924361-3924379|NC_002755.2_3926091-3926109|NC_002755.2_3926619-3926637|NC_002755.2_3942254-3942272|NC_002755.2_4023874-4023856|NC_002755.2_4086502-4086520|NC_002755.2_4086592-4086610|NC_002755.2_625326-625347|NC_002755.2_37006-36985|NC_002755.2_132087-132108|NC_002755.2_2918453-2918474	NA	17	17	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|89aa|up_3|NC_002755.2_1207617_1207884_+,NA|61aa|down_2|NC_002755.2_1215425_1215608_+	NA|465aa|up_9|NC_002755.2_1201951_1203346_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|up_8|NC_002755.2_1203547_1204270_+	pfam06271, RDD, RDD family	NA|389aa|up_7|NC_002755.2_1204301_1205468_+	PRK07811, PRK07811, cystathionine gamma-synthase; Provisional	NA|165aa|up_6|NC_002755.2_1205538_1206033_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|145aa|up_5|NC_002755.2_1206218_1206653_-	pfam14155, DUF4307, Domain of unknown function (DUF4307)	NA|289aa|up_4|NC_002755.2_1206754_1207621_+	TIGR03446, mycothiol_Mca, mycothiol conjugate amidase Mca	NA|89aa|up_3|NC_002755.2_1207617_1207884_+	NA	NA|674aa|up_2|NC_002755.2_1207870_1209892_+	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	NA|243aa|up_1|NC_002755.2_1209990_1210719_-	TIGR01065, Hypothetical_UPF0073_protein_yqfA	NA|263aa|up_0|NC_002755.2_1210829_1211618_+	PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional	NA|107aa|down_0|NC_002755.2_1214240_1214561_+	COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid metabolism]	NA|55aa|down_1|NC_002755.2_1215249_1215414_+	smart00637, CBD_II, CBD_II domain	NA|61aa|down_2|NC_002755.2_1215425_1215608_+	NA	NA|152aa|down_3|NC_002755.2_1215799_1216255_+	pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12	NA|636aa|down_4|NC_002755.2_1216669_1218577_+	pfam00934, PE, PE family	NA|313aa|down_5|NC_002755.2_1218794_1219733_-	PRK05439, PRK05439, pantothenate kinase; Provisional	NA|427aa|down_6|NC_002755.2_1220120_1221401_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|276aa|down_7|NC_002755.2_1221505_1222333_+	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|434aa|down_8|NC_002755.2_1222543_1223845_+	COG1875, COG1875, NYN ribonuclease and ATPase of PhoH family domains [General    function prediction only]	NA|292aa|down_9|NC_002755.2_1223931_1224807_+	cd10917, CE4_NodB_like_6s_7s, Catalytic NodB homology domain of rhizobial NodB-like proteins
GCF_000008585.1_ASM858v1	NC_002755	Mycobacterium tuberculosis CDC1551, complete sequence	7	1572043-1573115	5	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGGCACCGCCGTCGCCGAT	32	0	0	NA	NA	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|106aa|up_7|NC_002755.2_1563806_1564124_+,NA	NA|103aa|up_9|NC_002755.2_1561321_1561630_+	pfam00934, PE, PE family	NA|540aa|up_8|NC_002755.2_1561626_1563246_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|106aa|up_7|NC_002755.2_1563806_1564124_+	NA	NA|209aa|up_6|NC_002755.2_1564258_1564885_+	PRK00300, gmk, guanylate kinase; Provisional	NA|111aa|up_5|NC_002755.2_1564950_1565283_+	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|419aa|up_4|NC_002755.2_1565298_1566555_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|404aa|up_3|NC_002755.2_1566682_1567894_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|493aa|up_2|NC_002755.2_1567966_1569445_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|462aa|up_1|NC_002755.2_1569441_1570827_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|345aa|up_0|NC_002755.2_1570904_1571939_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|134aa|down_0|NC_002755.2_1573968_1574370_-	cd18741, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|86aa|down_1|NC_002755.2_1574366_1574624_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|320aa|down_2|NC_002755.2_1574706_1575666_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|321aa|down_3|NC_002755.2_1575690_1576653_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|246aa|down_4|NC_002755.2_1576651_1577389_+	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|655aa|down_5|NC_002755.2_1577469_1579434_+	PRK14873, PRK14873, primosomal protein N'	NA|275aa|down_6|NC_002755.2_1579451_1580276_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|161aa|down_7|NC_002755.2_1580444_1580927_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|275aa|down_8|NC_002755.2_1580998_1581823_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|313aa|down_9|NC_002755.2_1582019_1582958_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed
GCF_000008585.1_ASM858v1	NC_002755	Mycobacterium tuberculosis CDC1551, complete sequence	8	2085515-2085769	2	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2085596-2085613|2085596-2085613|2085686-2085703	NC_002755.2_401139-401122|NC_002755.2_608805-608788|NC_002755.2_3446006-3445989	NA	5	5	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NC_002755.2_2084874_2085138_-,NA	NA|248aa|up_9|NC_002755.2_2070417_2071161_+	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators	NA|165aa|up_8|NC_002755.2_2071279_2071774_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|211aa|up_7|NC_002755.2_2072110_2072743_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_6|NC_002755.2_2073101_2075927_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_5|NC_002755.2_2076153_2077014_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_4|NC_002755.2_2077054_2077921_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|678aa|up_3|NC_002755.2_2079828_2081862_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NC_002755.2_2081981_2084207_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NC_002755.2_2084482_2084878_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NC_002755.2_2084874_2085138_-	NA	NA|346aa|down_0|NC_002755.2_2086906_2087944_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NC_002755.2_2087943_2089311_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|480aa|down_2|NC_002755.2_2089484_2090924_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|484aa|down_3|NC_002755.2_2090956_2092408_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NC_002755.2_2092437_2093388_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NC_002755.2_2093402_2093819_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NC_002755.2_2094096_2094519_+	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|101aa|down_7|NC_002755.2_2094567_2094870_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NC_002755.2_2094866_2095181_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NC_002755.2_2095180_2096914_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_000008585.1_ASM858v1	NC_002755	Mycobacterium tuberculosis CDC1551, complete sequence	9	2166169-2166388	6	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	49	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_2|NC_002755.2_2157211_2157619_-,NA|127aa|down_5|NC_002755.2_2173904_2174285_-	NA|155aa|up_9|NC_002755.2_2150525_2150990_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_8|NC_002755.2_2151179_2153402_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_7|NC_002755.2_2153439_2153883_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_6|NC_002755.2_2153996_2154590_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_5|NC_002755.2_2154672_2155278_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_4|NC_002755.2_2155377_2156382_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_3|NC_002755.2_2156481_2157234_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_2|NC_002755.2_2157211_2157619_-	NA	NA|767aa|up_1|NC_002755.2_2157753_2160054_+	PLN02892, PLN02892, isocitrate lyase	NA|1481aa|up_0|NC_002755.2_2160223_2164666_-	pfam00823, PPE, PPE family	NA|155aa|down_0|NC_002755.2_2168415_2168880_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NC_002755.2_2168977_2169841_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NC_002755.2_2169878_2171150_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NC_002755.2_2171421_2172537_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NC_002755.2_2172527_2173868_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NC_002755.2_2173904_2174285_-	NA	NA|621aa|down_6|NC_002755.2_2174441_2176304_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NC_002755.2_2176311_2176791_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NC_002755.2_2177027_2177801_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_9|NC_002755.2_2179249_2179774_-	cd03139, GATase1_PfpI_2, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus
GCF_000008585.1_ASM858v1	NC_002755	Mycobacterium tuberculosis CDC1551, complete sequence	10	3113903-3115328	2,7,3	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-C,Type III-D,Type III-A,Type III-B	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGA,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	35,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	18,18,19	19	TypeIII-C,TypeIII-D,TypeIII-A,TypeIII-B	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_6|NC_002755.2_3107183_3107438_-,NA|135aa|up_5|NC_002755.2_3107585_3107990_+,NA|64aa|up_4|NC_002755.2_3107986_3108178_+,NA|86aa|up_3|NC_002755.2_3109764_3110022_+,NA|104aa|up_2|NC_002755.2_3110126_3110438_+,NA	NA|77aa|up_9|NC_002755.2_3105225_3105456_-	COG0864, NikR, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain [Transcription]	NA|348aa|up_8|NC_002755.2_3105498_3106542_-	COG5586, COG5586, Uncharacterized conserved protein [Function unknown]	NA|92aa|up_7|NC_002755.2_3106732_3107008_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_6|NC_002755.2_3107183_3107438_-	NA	NA|135aa|up_5|NC_002755.2_3107585_3107990_+	NA	NA|64aa|up_4|NC_002755.2_3107986_3108178_+	NA	NA|86aa|up_3|NC_002755.2_3109764_3110022_+	NA	NA|104aa|up_2|NC_002755.2_3110126_3110438_+	NA	NA|470aa|up_1|NC_002755.2_3111535_3112945_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NC_002755.2_3112941_3113754_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|NC_002755.2_3115354_3116616_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_1|NC_002755.2_3117829_3118171_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_2|NC_002755.2_3118171_3119188_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|416aa|down_3|NC_002755.2_3119200_3120448_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_4|NC_002755.2_3120444_3121572_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_5|NC_002755.2_3121568_3122477_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_6|NC_002755.2_3122457_3123168_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_7|NC_002755.2_3123177_3123552_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_8|NC_002755.2_3123548_3125987_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|263aa|down_9|NC_002755.2_3125983_3126772_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]
GCF_000008585.1_ASM858v1	NC_002755	Mycobacterium tuberculosis CDC1551, complete sequence	11	3116651-3117781	8,4,3	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-C,Type III-D,Type III-A,Type III-B	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	15,15,14	15	TypeIII-C,TypeIII-D,TypeIII-A,TypeIII-B	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_7|NC_002755.2_3107183_3107438_-,NA|135aa|up_6|NC_002755.2_3107585_3107990_+,NA|64aa|up_5|NC_002755.2_3107986_3108178_+,NA|86aa|up_4|NC_002755.2_3109764_3110022_+,NA|104aa|up_3|NC_002755.2_3110126_3110438_+,NA	NA|348aa|up_9|NC_002755.2_3105498_3106542_-	COG5586, COG5586, Uncharacterized conserved protein [Function unknown]	NA|92aa|up_8|NC_002755.2_3106732_3107008_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_7|NC_002755.2_3107183_3107438_-	NA	NA|135aa|up_6|NC_002755.2_3107585_3107990_+	NA	NA|64aa|up_5|NC_002755.2_3107986_3108178_+	NA	NA|86aa|up_4|NC_002755.2_3109764_3110022_+	NA	NA|104aa|up_3|NC_002755.2_3110126_3110438_+	NA	NA|470aa|up_2|NC_002755.2_3111535_3112945_+	pfam00665, rve, Integrase core domain	NA|271aa|up_1|NC_002755.2_3112941_3113754_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|up_0|NC_002755.2_3115354_3116616_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_0|NC_002755.2_3117829_3118171_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NC_002755.2_3118171_3119188_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|416aa|down_2|NC_002755.2_3119200_3120448_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|NC_002755.2_3120444_3121572_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|NC_002755.2_3121568_3122477_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|NC_002755.2_3122457_3123168_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|NC_002755.2_3123177_3123552_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_7|NC_002755.2_3123548_3125987_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|263aa|down_8|NC_002755.2_3125983_3126772_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|NC_002755.2_3127105_3127651_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000008585.1_ASM858v1	NC_002755	Mycobacterium tuberculosis CDC1551, complete sequence	12	3730204-3732019	5	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	NGCCGCCGTNGCCGCCGN	18	2	9	3730447-3730464|3730447-3730464|3730447-3730464|3730447-3730464|3731786-3731803|3731786-3731803|3731786-3731803|3731786-3731803|3731786-3731803	NC_002755.2_336999-337016|NC_002755.2_1854768-1854785|NC_002755.2_2359047-2359064|NC_002755.2_3049861-3049844|NC_002755.2_4367095-4367112|NC_002755.2_568762-568779|NC_002755.2_2651060-2651077|NC_002755.2_2918847-2918830|NC_002755.2_4251790-4251773	NA	30	30	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|96aa|down_3|NC_002755.2_3747559_3747847_-	NA|384aa|up_9|NC_002755.2_3716203_3717355_+	COG1820, NagA, N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]	NA|282aa|up_8|NC_002755.2_3717544_3718390_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|147aa|up_7|NC_002755.2_3718864_3719305_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_6|NC_002755.2_3719338_3720208_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_5|NC_002755.2_3720228_3721239_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|215aa|up_4|NC_002755.2_3721511_3722156_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_3|NC_002755.2_3722222_3723452_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_2|NC_002755.2_3723734_3725084_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_1|NC_002755.2_3725095_3726235_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_0|NC_002755.2_3726231_3726963_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|86aa|down_0|NC_002755.2_3735428_3735686_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|149aa|down_1|NC_002755.2_3746041_3746488_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|down_2|NC_002755.2_3746524_3747265_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|down_3|NC_002755.2_3747559_3747847_-	NA	NA|130aa|down_4|NC_002755.2_3761334_3761724_+	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|98aa|down_5|NC_002755.2_3761737_3762031_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|282aa|down_6|NC_002755.2_3762027_3762873_-	PRK14193, PRK14193, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	NA|92aa|down_7|NC_002755.2_3762996_3763272_+	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|86aa|down_8|NC_002755.2_3763268_3763526_+	pfam06769, YoeB_toxin, YoeB-like toxin of bacterial type II toxin-antitoxin system	NA|397aa|down_9|NC_002755.2_3763567_3764758_+	cd02803, OYE_like_FMN_family, Old yellow enzyme (OYE)-like FMN binding domain
GCF_000008585.1_ASM858v1	NC_002755	Mycobacterium tuberculosis CDC1551, complete sequence	13	3732838-3733517	6	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGNNNCCNCCGTNGCCGCC	23	0	0	NA	NA	NA	9	9	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|96aa|down_3|NC_002755.2_3747559_3747847_-	NA|282aa|up_9|NC_002755.2_3717544_3718390_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|147aa|up_8|NC_002755.2_3718864_3719305_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_7|NC_002755.2_3719338_3720208_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_6|NC_002755.2_3720228_3721239_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|215aa|up_5|NC_002755.2_3721511_3722156_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_4|NC_002755.2_3722222_3723452_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_3|NC_002755.2_3723734_3725084_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_2|NC_002755.2_3725095_3726235_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_1|NC_002755.2_3726231_3726963_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|339aa|up_0|NC_002755.2_3729307_3730324_-	pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal	NA|86aa|down_0|NC_002755.2_3735428_3735686_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|149aa|down_1|NC_002755.2_3746041_3746488_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|down_2|NC_002755.2_3746524_3747265_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|down_3|NC_002755.2_3747559_3747847_-	NA	NA|130aa|down_4|NC_002755.2_3761334_3761724_+	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|98aa|down_5|NC_002755.2_3761737_3762031_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|282aa|down_6|NC_002755.2_3762027_3762873_-	PRK14193, PRK14193, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	NA|92aa|down_7|NC_002755.2_3762996_3763272_+	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|86aa|down_8|NC_002755.2_3763268_3763526_+	pfam06769, YoeB_toxin, YoeB-like toxin of bacterial type II toxin-antitoxin system	NA|397aa|down_9|NC_002755.2_3763567_3764758_+	cd02803, OYE_like_FMN_family, Old yellow enzyme (OYE)-like FMN binding domain
GCF_000008585.1_ASM858v1	NC_002755	Mycobacterium tuberculosis CDC1551, complete sequence	14	4102936-4103024	9	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_6|NC_002755.2_4093522_4094293_-,NA|233aa|up_0|NC_002755.2_4102040_4102739_-,NA|126aa|down_6|NC_002755.2_4108259_4108637_+	NA|388aa|up_9|NC_002755.2_4089193_4090357_-	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase	NA|351aa|up_8|NC_002755.2_4090353_4091406_-	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein	NA|288aa|up_7|NC_002755.2_4091904_4092768_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_6|NC_002755.2_4093522_4094293_-	NA	NA|549aa|up_5|NC_002755.2_4094289_4095936_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_4|NC_002755.2_4095932_4096796_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_3|NC_002755.2_4096788_4097715_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_2|NC_002755.2_4097716_4099342_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|652aa|up_1|NC_002755.2_4100049_4102005_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NC_002755.2_4102040_4102739_-	NA	NA|173aa|down_0|NC_002755.2_4103084_4103603_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NC_002755.2_4103603_4104587_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NC_002755.2_4104579_4105773_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NC_002755.2_4105778_4106600_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|216aa|down_4|NC_002755.2_4106731_4107379_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NC_002755.2_4107414_4108152_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NC_002755.2_4108259_4108637_+	NA	NA|225aa|down_7|NC_002755.2_4108735_4109410_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NC_002755.2_4109513_4110308_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NC_002755.2_4110314_4110770_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
