The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_002967	Treponema denticola ATCC 35405, complete sequence	2843201	1182957	1245462	2843201	terminase,integrase,tail,protease,head	Bordetella_phage(11.76%)	62	1194215:1194231	1204844:1204860
WP_010956892.1|1182957_1184901_-	hypothetical protein	NA	Q775D1	Bordetella_phage	24.1	2.8e-25
WP_010956893.1|1184913_1185504_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010956894.1|1185618_1186050_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010956895.1|1186063_1186447_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010956896.1|1186515_1187478_-	hypothetical protein	NA	Q775C7	Bordetella_phage	34.6	1.5e-40
WP_010956897.1|1187490_1188333_-	hypothetical protein	NA	A0A0F7L573	uncultured_marine_virus	26.0	2.0e-07
WP_010956898.1|1188357_1188624_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010956899.1|1188616_1190299_-|head,tail	head-tail connector protein	head,tail	M1INZ1	Pelagibacter_phage	33.3	2.1e-64
WP_010956900.1|1190351_1190948_-	HNH endonuclease	NA	M1PKJ5	Streptococcus_phage	37.6	9.0e-31
WP_010956901.1|1190940_1191186_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010956902.1|1191245_1191545_-	hypothetical protein	NA	S0A2D4	Cellulophaga_phage	35.6	1.9e-05
WP_164920594.1|1191710_1192100_-	hypothetical protein	NA	NA	NA	NA	NA
WP_164920595.1|1192129_1193491_-|terminase	terminase	terminase	S4S2N2	Puniceispirillum_phage	35.6	1.8e-66
WP_010956905.1|1193502_1194114_-|terminase	terminase small subunit	terminase	NA	NA	NA	NA
WP_010699135.1|1194117_1194510_-	hypothetical protein	NA	NA	NA	NA	NA
1194215:1194231	attL	TTTTTTTGAATATCTTC	NA	NA	NA	NA
WP_010956906.1|1194506_1195931_-	hypothetical protein	NA	NA	NA	NA	NA
WP_164920596.1|1195909_1196158_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010956908.1|1196145_1197774_-	ParB/RepB/Spo0J family partition protein	NA	S5VSZ7	Leptospira_phage	28.8	1.7e-07
WP_010956909.1|1197789_1198020_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010956910.1|1198022_1198256_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010956911.1|1198270_1198480_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010956912.1|1198483_1198807_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010956913.1|1198803_1199028_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010956914.1|1199038_1199572_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010956915.1|1199568_1199814_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_164920611.1|1199933_1200302_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010956917.1|1200314_1201118_+	sel1 repeat family protein	NA	NA	NA	NA	NA
WP_010956919.1|1201346_1202411_-|integrase	tyrosine-type recombinase/integrase	integrase	D2ECI9	Treponema_phage	100.0	1.1e-60
WP_002670717.1|1202740_1203490_-	adenylate/guanylate cyclase domain-containing protein	NA	NA	NA	NA	NA
WP_002670719.1|1203606_1205241_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	57.6	1.2e-162
1204844:1204860	attR	TTTTTTTGAATATCTTC	NA	NA	NA	NA
WP_002682426.1|1205371_1206640_-	coproporphyrinogen III oxidase family protein	NA	NA	NA	NA	NA
WP_002682427.1|1206683_1207187_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_002670725.1|1207214_1208003_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.4	3.7e-16
WP_002670726.1|1208018_1209008_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_002671710.1|1209008_1209923_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002682429.1|1210031_1210598_+	methyltransferase	NA	NA	NA	NA	NA
WP_002682432.1|1210751_1211414_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	20.4	2.2e-06
WP_002682434.1|1211686_1213063_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_002682437.1|1213074_1213575_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010956922.1|1213727_1214645_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010956923.1|1214663_1216712_-	NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta	NA	NA	NA	NA	NA
WP_002670738.1|1216708_1217011_-	NAD(P) transhydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_002670740.1|1217007_1218165_-	NAD(P) transhydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_002670742.1|1218362_1218803_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002677676.1|1218852_1219278_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002678675.1|1225112_1227683_+	DUF2339 domain-containing protein	NA	NA	NA	NA	NA
WP_002678678.1|1227723_1229781_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_002678680.1|1230091_1230526_+	division/cell wall cluster transcriptional repressor MraZ	NA	NA	NA	NA	NA
WP_002678681.1|1230531_1231479_+	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA	NA
WP_002668438.1|1231480_1231765_+	cell division protein FtsL	NA	NA	NA	NA	NA
WP_002678687.1|1231757_1233188_+	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA	NA
WP_002677685.1|1233188_1234322_+	putative lipid II flippase FtsW	NA	NA	NA	NA	NA
WP_002668441.1|1234322_1235180_+	FtsQ-type POTRA domain-containing protein	NA	NA	NA	NA	NA
WP_002678694.1|1235172_1236417_+	cell division protein FtsA	NA	NA	NA	NA	NA
WP_002678695.1|1236442_1237726_+	cell division protein FtsZ	NA	NA	NA	NA	NA
WP_044909847.1|1237738_1238653_+	tyrosine recombinase XerD	NA	A0A0F6SJK8	Mycobacterium_phage	31.8	1.7e-17
WP_002678696.1|1238649_1239372_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_002677699.1|1239375_1240308_+	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	35.0	2.5e-27
WP_002678704.1|1240326_1242492_+	type I DNA topoisomerase	NA	E3T4K4	Cafeteria_roenbergensis_virus	36.9	1.1e-91
WP_002678705.1|1242484_1243402_+	tyrosine recombinase XerC	NA	A0A0K2CP59	Brevibacillus_phage	28.9	7.3e-24
WP_002668456.1|1243468_1244005_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_002677705.1|1244004_1245462_+|protease	ATP-dependent protease ATPase subunit HslU	protease	W6AS21	Erwinia_phage	27.5	8.3e-38
>prophage 2
NC_002967	Treponema denticola ATCC 35405, complete sequence	2843201	1326468	1383410	2843201	tRNA,protease,transposase	Bacillus_virus(14.29%)	48	NA	NA
WP_044971571.1|1326468_1327335_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_002678794.1|1327487_1328708_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002678795.1|1328727_1329303_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_002678796.1|1329403_1330711_-	TldD/PmbA family protein	NA	NA	NA	NA	NA
WP_002668604.1|1330710_1332093_-	TldD/PmbA family protein	NA	NA	NA	NA	NA
WP_002668605.1|1332144_1332411_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_002671537.1|1333553_1333844_-	HPF/RaiA family ribosome-associated protein	NA	NA	NA	NA	NA
WP_002678797.1|1333966_1334872_-	M23 family metallopeptidase	NA	M1HNA7	Bacillus_virus	34.9	1.6e-07
WP_002668609.1|1334871_1335405_-	cyclic nucleotide-binding domain-containing protein	NA	NA	NA	NA	NA
WP_002671534.1|1335506_1336703_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_002668611.1|1336699_1337509_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002678799.1|1337520_1339206_-	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_002671531.1|1339302_1339734_-	hemerythrin family protein	NA	NA	NA	NA	NA
WP_002678826.1|1340095_1340458_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002678829.1|1340541_1340964_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002678830.1|1341093_1342581_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002678841.1|1342602_1344630_+	transketolase	NA	NA	NA	NA	NA
WP_002678842.1|1344674_1346102_+	TldD/PmbA family protein	NA	NA	NA	NA	NA
WP_002678843.1|1346101_1347400_+	modulator protein	NA	NA	NA	NA	NA
WP_002678844.1|1347510_1349115_+	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	22.8	1.7e-07
WP_002678845.1|1349227_1350775_+	DUF853 family protein	NA	A0A248XCZ8	Klebsiella_phage	40.6	8.2e-76
WP_010956947.1|1350789_1351326_+	signal peptidase I	NA	NA	NA	NA	NA
WP_002678847.1|1351313_1353176_+	transpeptidase family protein	NA	NA	NA	NA	NA
WP_002678850.1|1355059_1355554_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_002678853.1|1355586_1356741_+	PilZ domain-containing protein	NA	NA	NA	NA	NA
WP_002678862.1|1356737_1357910_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010956948.1|1357903_1359478_+	ComEC/Rec2 family competence protein	NA	NA	NA	NA	NA
WP_002678865.1|1359474_1360083_+	YigZ family protein	NA	NA	NA	NA	NA
WP_002678867.1|1360109_1360826_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002678868.1|1361004_1361700_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_002678869.1|1361878_1363039_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002668656.1|1363051_1363492_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002668661.1|1363642_1365406_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_002678882.1|1365518_1365974_+	transcriptional repressor NrdR	NA	NA	NA	NA	NA
WP_002678883.1|1366007_1368134_+	ribonucleoside triphosphate reductase	NA	D9ZNH0	Clostridium_phage	47.4	7.6e-149
WP_002678884.1|1368181_1369138_+|protease	FtsH protease activity modulator HflK	protease	A0A1V0SGV2	Hokovirus	46.0	3.6e-05
WP_002678885.1|1369143_1370208_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_002678886.1|1370307_1370934_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010956953.1|1370955_1372428_+	MBOAT family protein	NA	A0A125RNP0	Pseudomonas_phage	30.4	2.8e-41
WP_002678890.1|1372442_1373840_+	DUF459 domain-containing protein	NA	NA	NA	NA	NA
WP_002678891.1|1373855_1374896_-	DUF2804 domain-containing protein	NA	NA	NA	NA	NA
WP_002678892.1|1375028_1375883_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
WP_002678893.1|1375946_1376228_+	septation regulator SpoVG	NA	NA	NA	NA	NA
WP_002678895.1|1376456_1377092_+	50S ribosomal protein L25	NA	NA	NA	NA	NA
WP_002678896.1|1377220_1378585_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
WP_002678898.1|1378581_1380621_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_002678901.1|1380685_1382296_+|protease	serine protease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	26.5	1.4e-14
WP_002678903.1|1382531_1383410_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
>prophage 3
NC_002967	Treponema denticola ATCC 35405, complete sequence	2843201	1862456	1912110	2843201	integrase,protease,tRNA,transposase	Moraxella_phage(33.33%)	49	1867528:1867546	1911295:1911313
WP_002683308.1|1862456_1863737_-|protease	aspartyl protease family protein	protease	NA	NA	NA	NA
WP_002683251.1|1865261_1866011_-	SIMPL domain-containing protein	NA	NA	NA	NA	NA
WP_002679539.1|1866366_1866804_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002679540.1|1866991_1868407_-	hypothetical protein	NA	NA	NA	NA	NA
1867528:1867546	attL	TATTTTTTTCAAATAATTC	NA	NA	NA	NA
WP_002679541.1|1868603_1869533_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002669522.1|1869631_1870036_-	type II toxin-antitoxin system HicB family antitoxin	NA	I3NLB2	Bifidobacterium_phage	40.8	1.1e-24
WP_002669524.1|1870057_1870240_-	type II toxin-antitoxin system HicA family toxin	NA	A0A0R6PJD4	Moraxella_phage	58.3	1.8e-14
WP_002679542.1|1870480_1871311_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010692225.1|1871413_1871671_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010692226.1|1871660_1871951_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002681206.1|1872288_1873095_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002679544.1|1873286_1874567_-|integrase	integron integrase	integrase	A0A1P8DJJ6	Virus_Rctr41k	38.6	2.9e-58
WP_002669605.1|1874890_1875259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002669606.1|1875258_1875516_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002679545.1|1875986_1877444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002679546.1|1877445_1878213_-	outer membrane lipoprotein-sorting protein	NA	NA	NA	NA	NA
WP_002669609.1|1878316_1879651_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_002679548.1|1879666_1881187_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_002669611.1|1881203_1881956_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.1	9.0e-28
WP_002669612.1|1882481_1882805_-	nucleotidyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_002675070.1|1882985_1883273_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002669614.1|1883272_1884016_+	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	NA	NA	NA	NA
WP_002669617.1|1884018_1884540_-	DUF2147 domain-containing protein	NA	NA	NA	NA	NA
WP_002669619.1|1884771_1885086_+	PadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002679550.1|1885096_1886290_+	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_002669622.1|1886291_1886822_+	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_002669623.1|1886837_1887026_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002679552.1|1887067_1888039_+	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_002679554.1|1888063_1888669_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_002679556.1|1888661_1889198_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_002679557.1|1889230_1892284_-	insulinase family protein	NA	NA	NA	NA	NA
WP_010957082.1|1892745_1893582_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010957083.1|1893751_1894612_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010957085.1|1894818_1895685_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_002679571.1|1895895_1897023_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002675248.1|1897028_1897769_-	WecB/TagA/CpsF family glycosyltransferase	NA	NA	NA	NA	NA
WP_002679573.1|1897749_1898523_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_002679576.1|1898522_1900001_-	S41 family peptidase	NA	A0A0R6PIZ1	Moraxella_phage	28.0	4.7e-20
WP_002679577.1|1900049_1900775_-	HAD family hydrolase	NA	NA	NA	NA	NA
WP_002669683.1|1902674_1903118_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002669684.1|1903139_1903691_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_002679578.1|1903683_1904967_+	glycoside hydrolase family 1 protein	NA	A0A0B5JD41	Pandoravirus	24.8	8.4e-34
WP_002679579.1|1904999_1905932_-	DMT family transporter	NA	NA	NA	NA	NA
WP_002675036.1|1905963_1907106_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002679581.1|1907171_1908578_-|tRNA	tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB	tRNA	NA	NA	NA	NA
WP_002679583.1|1908581_1909223_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_002669698.1|1909212_1909590_-	polymer-forming cytoskeletal protein	NA	NA	NA	NA	NA
WP_002669699.1|1909589_1910978_-	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA	NA
WP_002679585.1|1911345_1912110_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
1911295:1911313	attR	TATTTTTTTCAAATAATTC	NA	NA	NA	NA
