assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000008125.1_ASM812v1	NC_005835	Thermus thermophilus HB27, complete sequence	1	541151-541341	1,1	PILER-CR,CRISPRCasFinder	no		DEDDh,csa3,cas3,Cas9_archaeal,cas2,cas6	Orphan	CATACGTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC,GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC	41,36	0	0	NA	NA	III-A:III-A	2,2	2	Orphan	DEDDh,csa3,cas3,Cas9_archaeal,cas2,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,DinG,cas5,cas8c,cas7b,cas1,cas4,WYL,cas8b5	NA|80aa|up_0|NC_005835.1_540860_541100_-,NA	NA|145aa|up_9|NC_005835.1_532454_532889_-	PRK05422, smpB, SsrA-binding protein SmpB	NA|236aa|up_8|NC_005835.1_532890_533598_-	cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes	NA|202aa|up_7|NC_005835.1_533597_534203_-	COG1268, BioY, Uncharacterized conserved protein [General function prediction only]	NA|332aa|up_6|NC_005835.1_534314_535310_+	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]	NA|391aa|up_5|NC_005835.1_535310_536483_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|96aa|up_4|NC_005835.1_536528_536816_+	pfam02033, RBFA, Ribosome-binding factor A	NA|133aa|up_3|NC_005835.1_536794_537193_+	COG0824, FcbC, Predicted thioesterase [General function prediction only]	NA|415aa|up_2|NC_005835.1_537202_538447_+	COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]	NA|745aa|up_1|NC_005835.1_538448_540683_+	TIGR02063, Ribonuclease_R, ribonuclease R	NA|80aa|up_0|NC_005835.1_540860_541100_-	NA	NA|371aa|down_0|NC_005835.1_541502_542615_-	pfam01875, Memo, Memo-like protein	NA|432aa|down_1|NC_005835.1_542568_543864_-	TIGR02692, putative_tRNA_nucleotidyltransferase, tRNA adenylyltransferase	NA|204aa|down_2|NC_005835.1_543864_544476_+	pfam01121, CoaE, Dephospho-CoA kinase	NA|168aa|down_3|NC_005835.1_544444_544948_-	pfam02660, G3P_acyltransf, Glycerol-3-phosphate acyltransferase	NA|172aa|down_4|NC_005835.1_545151_545667_+	pfam03602, Cons_hypoth95, Conserved hypothetical protein 95	NA|161aa|down_5|NC_005835.1_545667_546150_+	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional	NA|497aa|down_6|NC_005835.1_546160_547651_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|434aa|down_7|NC_005835.1_547709_549011_-	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA|404aa|down_8|NC_005835.1_548994_550206_-	PRK05326, PRK05326, potassium/proton antiporter	NA|425aa|down_9|NC_005835.1_550218_551493_-	PRK00062, PRK00062, glutamate-1-semialdehyde 2,1-aminomutase
GCF_000008125.1_ASM812v1	NC_005835	Thermus thermophilus HB27, complete sequence	2	1136637-1137118	2,1,2	CRISPRCasFinder,CRT,PILER-CR	no		DEDDh,csa3,cas3,Cas9_archaeal,cas2,cas6	Orphan	GTCGCAATCCCCTTACGGGGCTCAATCCCTTGCAAC,GTCGCAATCCCCTTACGGGGCTCAATCCCTTGCAAC,GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC	36,36,36	0	0	NA	NA	III-A:III-A:III-A	6,6,5	6	Orphan	DEDDh,csa3,cas3,Cas9_archaeal,cas2,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,DinG,cas5,cas8c,cas7b,cas1,cas4,WYL,cas8b5	NA,NA|80aa|down_0|NC_005835.1_1137169_1137409_+,NA|147aa|down_5|NC_005835.1_1145784_1146225_-,NA|132aa|down_6|NC_005835.1_1146221_1146617_-	NA|408aa|up_9|NC_005835.1_1126353_1127577_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|529aa|up_8|NC_005835.1_1127601_1129188_+	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|287aa|up_7|NC_005835.1_1129199_1130060_+	cd07938, DRE_TIM_HMGL, 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain	NA|319aa|up_6|NC_005835.1_1130050_1131007_-	cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|132aa|up_5|NC_005835.1_1131068_1131464_-	pfam11432, DUF3197, Protein of unknown function (DUF3197)	NA|163aa|up_4|NC_005835.1_1131480_1131969_-	pfam12867, DinB_2, DinB superfamily	NA|210aa|up_3|NC_005835.1_1131987_1132617_+	pfam03692, CxxCxxCC, Putative zinc- or iron-chelating domain	NA|357aa|up_2|NC_005835.1_1132566_1133637_-	cd02575, PseudoU_synth_EcTruD, Pseudouridine synthase, similar to Escherichia coli TruD	NA|571aa|up_1|NC_005835.1_1133651_1135364_-	TIGR02290, oligoendopeptidase_F, oligoendopeptidase, pepF/M3 family	NA|318aa|up_0|NC_005835.1_1135671_1136625_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|80aa|down_0|NC_005835.1_1137169_1137409_+	NA	NA|600aa|down_1|NC_005835.1_1137729_1139529_+	COG0557, VacB, Exoribonuclease R [Transcription]	NA|497aa|down_2|NC_005835.1_1139592_1141083_-	PRK09222, PRK09222, NADP-dependent isocitrate dehydrogenase	NA|529aa|down_3|NC_005835.1_1141899_1143486_-	TIGR01766, Putative_transposase_MJ0751, transposase, IS605 OrfB family, central region	NA|508aa|down_4|NC_005835.1_1144119_1145643_+	cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]	NA|147aa|down_5|NC_005835.1_1145784_1146225_-	NA	NA|132aa|down_6|NC_005835.1_1146221_1146617_-	NA	NA|211aa|down_7|NC_005835.1_1146613_1147246_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|138aa|down_8|NC_005835.1_1147267_1147681_+	TIGR00369, Putative_esterase, uncharacterized domain 1	NA|321aa|down_9|NC_005835.1_1147654_1148617_-	cd01301, rDP_like, renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics
GCF_000008125.1_ASM812v1	NC_005838	Thermus thermophilus HB27 plasmid pTT27, complete sequence	1	2352-2578	1	PILER-CR	no		cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,DinG,cas3,cas5,cas8c,cas7b,cas1,cas4,WYL,cas8b5,cas6	Orphan	TCCAGCTTGGTCTCCACCTCCTGGATCCGCCTCTCCAGC	39	0	0	NA	NA	NA	2	2	Orphan	DEDDh,csa3,cas3,Cas9_archaeal,cas2,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,DinG,cas5,cas8c,cas7b,cas1,cas4,WYL,cas8b5	NA,NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|441aa|up_1|NC_005838.1_300_1623_-	PRK01077, PRK01077, cobyrinate a,c-diamide synthase	NA|188aa|up_0|NC_005838.1_1622_2186_-	pfam02572, CobA_CobO_BtuR, ATP:corrinoid adenosyltransferase BtuR/CobO/CobP	NA|240aa|down_0|NC_005838.1_2758_3478_-	pfam02654, CobS, Cobalamin-5-phosphate synthase	NA|337aa|down_1|NC_005838.1_3474_4485_-	pfam02277, DBI_PRT, Phosphoribosyltransferase	NA|178aa|down_2|NC_005838.1_4508_5042_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|221aa|down_3|NC_005838.1_5306_5969_+	COG3376, HoxN, High-affinity nickel permease [Inorganic ion transport and metabolism]	NA|367aa|down_4|NC_005838.1_5965_7066_+	PRK00075, cbiD, cobalt-precorrin-6A synthase; Reviewed	NA|233aa|down_5|NC_005838.1_7058_7757_+	pfam02570, CbiC, Precorrin-8X methylmutase	NA|404aa|down_6|NC_005838.1_7757_8969_+	cd11644, Precorrin-6Y-MT, Precorrin-6Y methyltransferase (also named CbiE)	NA|224aa|down_7|NC_005838.1_8965_9637_+	cd11645, Precorrin_2_C20_MT, Precorrin-2 C20-methyltransferase, also named CobI or CbiL	NA|248aa|down_8|NC_005838.1_9633_10377_+	cd11641, Precorrin-4_C11-MT, Precorrin-4 C11-methyltransferase (CbiF/CobM)	NA|288aa|down_9|NC_005838.1_10381_11245_+	cd11646, Precorrin_3B_C17_MT, Precorrin-3B C(17)-methyltransferase (also named CobJ or CbiH)
GCF_000008125.1_ASM812v1	NC_005838	Thermus thermophilus HB27 plasmid pTT27, complete sequence	2	92158-92424	2,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11	cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,DinG,cas3,cas5,cas8c,cas7b,cas1,cas4,WYL,cas8b5,cas6	Type III-B,Type III-C,Type III-A,Type III-D	GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC,GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC,GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC	36,36,36	0	0	NA	NA	III-A:III-A:III-A	3,3,3	3	TypeIII-B,TypeIII-C,TypeIII-A,TypeIII-D	DEDDh,csa3,cas3,Cas9_archaeal,cas2,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,DinG,cas5,cas8c,cas7b,cas1,cas4,WYL,cas8b5	NA|107aa|up_5|NC_005838.1_87906_88227_-,NA|60aa|up_1|NC_005838.1_89722_89902_+,NA|153aa|down_7|NC_005838.1_99852_100311_-,NA|637aa|down_8|NC_005838.1_101656_103567_+,NA|174aa|down_9|NC_005838.1_103537_104059_-	NA|183aa|up_9|NC_005838.1_84597_85146_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|155aa|up_8|NC_005838.1_85149_85614_-	pfam16694, Cytochrome_P460, Cytochrome P460	NA|230aa|up_7|NC_005838.1_86007_86697_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|366aa|up_6|NC_005838.1_86729_87827_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|107aa|up_5|NC_005838.1_87906_88227_-	NA	NA|177aa|up_4|NC_005838.1_88320_88851_+	PRK14054, PRK14054, peptide-methionine (S)-S-oxide reductase	NA|77aa|up_3|NC_005838.1_89065_89296_+	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system	NA|135aa|up_2|NC_005838.1_89292_89697_+	cd09872, PIN_Sll0205-like, VapC-like PIN domain of Sll0205 protein and homologs	NA|60aa|up_1|NC_005838.1_89722_89902_+	NA	NA|345aa|up_0|NC_005838.1_91070_92104_-	pfam13358, DDE_3, DDE superfamily endonuclease	cas2|91aa|down_0|NC_005838.1_92453_92726_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas10|806aa|down_1|NC_005838.1_92781_95199_+	TIGR02578, CRISPR-associated_protein_Cas10/Csm1, CRISPR-associated protein Cas10/Csm1, subtype III-A/MTUBE	csm2gr11|135aa|down_2|NC_005838.1_95199_95604_+	cd09647, Csm2_III-A, CRISPR/Cas system-associated protein Csm2	csm3gr7|242aa|down_3|NC_005838.1_95615_96341_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm4gr5|292aa|down_4|NC_005838.1_96350_97226_+	cd09663, Csm4_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm4	csm5gr7|385aa|down_5|NC_005838.1_97222_98377_+	TIGR01899, cas_TM1807_csm5, CRISPR type III-A/MTUBE-associated RAMP protein Csm5	csx1|465aa|down_6|NC_005838.1_98387_99782_+	pfam09670, Cas_Cas02710, CRISPR-associated protein (Cas_Cas02710)	NA|153aa|down_7|NC_005838.1_99852_100311_-	NA	NA|637aa|down_8|NC_005838.1_101656_103567_+	NA	NA|174aa|down_9|NC_005838.1_103537_104059_-	NA
GCF_000008125.1_ASM812v1	NC_005838	Thermus thermophilus HB27 plasmid pTT27, complete sequence	3	100454-101620	3,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11	cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,DinG,cas3,cas5,cas8c,cas7b,cas1,cas4,WYL,cas8b5,cas6	Type III-B,Type III-C,Type III-A,Type III-D	GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGACT,GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC,GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC	37,36,36	0	0	NA	NA	III-A:III-A:III-A	3,15,15	15	TypeIII-B,TypeIII-C,TypeIII-A,TypeIII-D	DEDDh,csa3,cas3,Cas9_archaeal,cas2,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,DinG,cas5,cas8c,cas7b,cas1,cas4,WYL,cas8b5	NA|60aa|up_9|NC_005838.1_89722_89902_+,NA|153aa|up_0|NC_005838.1_99852_100311_-,NA|637aa|down_0|NC_005838.1_101656_103567_+,NA|174aa|down_1|NC_005838.1_103537_104059_-,NA|240aa|down_2|NC_005838.1_104063_104783_-,NA|322aa|down_3|NC_005838.1_104751_105717_-,NA|137aa|down_4|NC_005838.1_105709_106120_-	NA|60aa|up_9|NC_005838.1_89722_89902_+	NA	NA|345aa|up_8|NC_005838.1_91070_92104_-	pfam13358, DDE_3, DDE superfamily endonuclease	cas2|91aa|up_7|NC_005838.1_92453_92726_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas10|806aa|up_6|NC_005838.1_92781_95199_+	TIGR02578, CRISPR-associated_protein_Cas10/Csm1, CRISPR-associated protein Cas10/Csm1, subtype III-A/MTUBE	csm2gr11|135aa|up_5|NC_005838.1_95199_95604_+	cd09647, Csm2_III-A, CRISPR/Cas system-associated protein Csm2	csm3gr7|242aa|up_4|NC_005838.1_95615_96341_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm4gr5|292aa|up_3|NC_005838.1_96350_97226_+	cd09663, Csm4_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm4	csm5gr7|385aa|up_2|NC_005838.1_97222_98377_+	TIGR01899, cas_TM1807_csm5, CRISPR type III-A/MTUBE-associated RAMP protein Csm5	csx1|465aa|up_1|NC_005838.1_98387_99782_+	pfam09670, Cas_Cas02710, CRISPR-associated protein (Cas_Cas02710)	NA|153aa|up_0|NC_005838.1_99852_100311_-	NA	NA|637aa|down_0|NC_005838.1_101656_103567_+	NA	NA|174aa|down_1|NC_005838.1_103537_104059_-	NA	NA|240aa|down_2|NC_005838.1_104063_104783_-	NA	NA|322aa|down_3|NC_005838.1_104751_105717_-	NA	NA|137aa|down_4|NC_005838.1_105709_106120_-	NA	cas10|585aa|down_5|NC_005838.1_106246_108001_+	TIGR02577, thermophile-specific_DNA_repair_system, CRISPR-associated protein Cas10/Cmr2, subtype III-B	cmr3gr5|362aa|down_6|NC_005838.1_107990_109076_+	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3	cmr1gr7|396aa|down_7|NC_005838.1_109072_110260_+	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	cmr4gr7|287aa|down_8|NC_005838.1_110275_111136_+	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4	cmr5gr11|115aa|down_9|NC_005838.1_111139_111484_+	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5)
GCF_000008125.1_ASM812v1	NC_005838	Thermus thermophilus HB27 plasmid pTT27, complete sequence	4	131658-132212	4,3,3	PILER-CR,CRISPRCasFinder,CRT	no	DinG,cas3,cas5,cas8c,cas7b	cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,DinG,cas3,cas5,cas8c,cas7b,cas1,cas4,WYL,cas8b5,cas6	Type I-C,Type I-U, Type I-U?	GTTTCAATCCTCACCGGCCCTTTCGGGCCGGTGCAAC,GTTTCAATCCTCACCGGCCCTTTCGGGCCGGTGCAAC,GTTTCAATCCTCACCGGCCCTTTCGGGCCGGTGCAAC	37,37,37	0	0	NA	NA	I-C,III-B:I-C,III-B:I-C,III-B	7,7,7	7	TypeI-C,TypeI-U,TypeI-U?	DEDDh,csa3,cas3,Cas9_archaeal,cas2,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,DinG,cas5,cas8c,cas7b,cas1,cas4,WYL,cas8b5	NA|93aa|up_0|NC_005838.1_131286_131565_+,NA|46aa|down_7|NC_005838.1_145010_145148_+	cmr4gr7|287aa|up_9|NC_005838.1_110275_111136_+	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4	cmr5gr11|115aa|up_8|NC_005838.1_111139_111484_+	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5)	NA|571aa|up_7|NC_005838.1_113285_114998_+	COG2414, COG2414, Aldehyde:ferredoxin oxidoreductase [Energy production and conversion]	NA|259aa|up_6|NC_005838.1_115000_115777_-	pfam02517, Abi, CAAX protease self-immunity	NA|515aa|up_5|NC_005838.1_116352_117897_-	COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]	NA|181aa|up_4|NC_005838.1_117872_118415_-	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|280aa|up_3|NC_005838.1_118411_119251_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	DinG|1650aa|up_2|NC_005838.1_119269_124219_-	COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair]	NA|1796aa|up_1|NC_005838.1_125671_131059_+	COG4625, COG4625, Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain [Function unknown]	NA|93aa|up_0|NC_005838.1_131286_131565_+	NA	cas3|728aa|down_0|NC_005838.1_132414_134598_+	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	cas5|230aa|down_1|NC_005838.1_134607_135297_+	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas8c|588aa|down_2|NC_005838.1_135280_137044_+	TIGR01863, CRISPR-associated_protein_CT1133_family, CRISPR-associated protein Cas8c/Csd1, subtype I-C/DVULG	cas7b|385aa|down_3|NC_005838.1_137040_138195_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	NA|251aa|down_4|NC_005838.1_139254_140007_-	pfam03746, LamB_YcsF, LamB/YcsF family	NA|1043aa|down_5|NC_005838.1_140034_143163_-	cd02767, MopB_ydeP, The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site	NA|386aa|down_6|NC_005838.1_143692_144850_+	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|46aa|down_7|NC_005838.1_145010_145148_+	NA	NA|139aa|down_8|NC_005838.1_145382_145799_-	cd18746, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|87aa|down_9|NC_005838.1_145795_146056_-	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system
GCF_000008125.1_ASM812v1	NC_005838	Thermus thermophilus HB27 plasmid pTT27, complete sequence	5	138645-139200	5,4,4	PILER-CR,CRISPRCasFinder,CRT	no	DinG,cas3,cas5,cas8c,cas7b	cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,DinG,cas3,cas5,cas8c,cas7b,cas1,cas4,WYL,cas8b5,cas6	Type I-C,Type I-U, Type I-U?	TTTCAATCCTCACCGGCCCTTTCGGGCCGGTGCAAC,GTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAAC,CGGCCCGAAAGGGCCGGTGAGGATTGAAAC	36,37,30	0	0	NA	NA	I-C,III-B:I-C,III-B:I-C,III-B	7,7,7	7	TypeI-C,TypeI-U,TypeI-U?	DEDDh,csa3,cas3,Cas9_archaeal,cas2,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,DinG,cas5,cas8c,cas7b,cas1,cas4,WYL,cas8b5	NA|93aa|up_4|NC_005838.1_131286_131565_+,NA|46aa|down_3|NC_005838.1_145010_145148_+,NA|403aa|down_6|NC_005838.1_148385_149594_+,NA|60aa|down_8|NC_005838.1_152874_153054_-	NA|515aa|up_9|NC_005838.1_116352_117897_-	COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]	NA|181aa|up_8|NC_005838.1_117872_118415_-	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|280aa|up_7|NC_005838.1_118411_119251_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	DinG|1650aa|up_6|NC_005838.1_119269_124219_-	COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair]	NA|1796aa|up_5|NC_005838.1_125671_131059_+	COG4625, COG4625, Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain [Function unknown]	NA|93aa|up_4|NC_005838.1_131286_131565_+	NA	cas3|728aa|up_3|NC_005838.1_132414_134598_+	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	cas5|230aa|up_2|NC_005838.1_134607_135297_+	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas8c|588aa|up_1|NC_005838.1_135280_137044_+	TIGR01863, CRISPR-associated_protein_CT1133_family, CRISPR-associated protein Cas8c/Csd1, subtype I-C/DVULG	cas7b|385aa|up_0|NC_005838.1_137040_138195_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	NA|251aa|down_0|NC_005838.1_139254_140007_-	pfam03746, LamB_YcsF, LamB/YcsF family	NA|1043aa|down_1|NC_005838.1_140034_143163_-	cd02767, MopB_ydeP, The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site	NA|386aa|down_2|NC_005838.1_143692_144850_+	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|46aa|down_3|NC_005838.1_145010_145148_+	NA	NA|139aa|down_4|NC_005838.1_145382_145799_-	cd18746, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|87aa|down_5|NC_005838.1_145795_146056_-	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system	NA|403aa|down_6|NC_005838.1_148385_149594_+	NA	NA|907aa|down_7|NC_005838.1_149726_152447_+	PRK13800, PRK13800, fumarate reductase/succinate dehydrogenase flavoprotein subunit	NA|60aa|down_8|NC_005838.1_152874_153054_-	NA	NA|68aa|down_9|NC_005838.1_154071_154275_+	pfam09821, AAA_assoc_C, C-terminal AAA-associated domain
GCF_000008125.1_ASM812v1	NC_005838	Thermus thermophilus HB27 plasmid pTT27, complete sequence	6	153106-153599	6,5,5	PILER-CR,CRISPRCasFinder,CRT	no	cas5,cas8c,cas7b	cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,DinG,cas3,cas5,cas8c,cas7b,cas1,cas4,WYL,cas8b5,cas6	Type I-C,Type I-U, Type I-U?	GTTGCAAGGGATTGAACCCCGTAAGGGGATTGCGAC,GTTGCAAGGGATTGAACCCCGTAAGGGGATTGCGAC,GTTGCAAGGGATTGANCCCCGTAAGGGGATTGCGAC	36,36,36	0	0	NA	NA	III-A:III-A:III-A	5,6,6	6	TypeI-C,TypeI-U,TypeI-U?	DEDDh,csa3,cas3,Cas9_archaeal,cas2,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,DinG,cas5,cas8c,cas7b,cas1,cas4,WYL,cas8b5	NA|46aa|up_5|NC_005838.1_145010_145148_+,NA|403aa|up_2|NC_005838.1_148385_149594_+,NA|60aa|up_0|NC_005838.1_152874_153054_-,NA|59aa|down_3|NC_005838.1_156057_156234_+	cas7b|385aa|up_9|NC_005838.1_137040_138195_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	NA|251aa|up_8|NC_005838.1_139254_140007_-	pfam03746, LamB_YcsF, LamB/YcsF family	NA|1043aa|up_7|NC_005838.1_140034_143163_-	cd02767, MopB_ydeP, The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site	NA|386aa|up_6|NC_005838.1_143692_144850_+	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|46aa|up_5|NC_005838.1_145010_145148_+	NA	NA|139aa|up_4|NC_005838.1_145382_145799_-	cd18746, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|87aa|up_3|NC_005838.1_145795_146056_-	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system	NA|403aa|up_2|NC_005838.1_148385_149594_+	NA	NA|907aa|up_1|NC_005838.1_149726_152447_+	PRK13800, PRK13800, fumarate reductase/succinate dehydrogenase flavoprotein subunit	NA|60aa|up_0|NC_005838.1_152874_153054_-	NA	NA|68aa|down_0|NC_005838.1_154071_154275_+	pfam09821, AAA_assoc_C, C-terminal AAA-associated domain	NA|107aa|down_1|NC_005838.1_154398_154719_+	COG2329, COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides [General function prediction only]	NA|102aa|down_2|NC_005838.1_155019_155325_+	cd14658, Imelysin-like_IrpA, Imelysin-like domain in iron-regulated protein A	NA|59aa|down_3|NC_005838.1_156057_156234_+	NA	NA|529aa|down_4|NC_005838.1_156489_158076_-	TIGR01766, Putative_transposase_MJ0751, transposase, IS605 OrfB family, central region	NA|152aa|down_5|NC_005838.1_158235_158691_-	pfam13470, PIN_3, PIN domain	NA|81aa|down_6|NC_005838.1_158671_158914_-	TIGR01439, Uncharacterized_protein_Mb2626, looped-hinge helix DNA binding domain, AbrB family	NA|230aa|down_7|NC_005838.1_160288_160978_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|134aa|down_8|NC_005838.1_161358_161760_+	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism]	NA|325aa|down_9|NC_005838.1_161740_162715_+	cd01049, RNRR2, Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain
GCF_000008125.1_ASM812v1	NC_005838	Thermus thermophilus HB27 plasmid pTT27, complete sequence	7	191888-192358	7,6,6	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas4,WYL,cas8b5,cas5,cas6	cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,DinG,cas3,cas5,cas8c,cas7b,cas1,cas4,WYL,cas8b5,cas6	Unclear	GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC,GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC,GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC	36,36,36	0	0	NA	NA	NA:NA:NA	6,6,6	6	Unclear	DEDDh,csa3,cas3,Cas9_archaeal,cas2,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,DinG,cas5,cas8c,cas7b,cas1,cas4,WYL,cas8b5	NA|73aa|up_7|NC_005838.1_182599_182818_+,NA|139aa|up_6|NC_005838.1_184912_185329_+,NA|604aa|up_5|NC_005838.1_185358_187170_+,NA|123aa|up_4|NC_005838.1_187225_187594_-,NA|76aa|up_2|NC_005838.1_189374_189602_+,NA|54aa|up_0|NC_005838.1_189983_190145_-,cas5|305aa|down_5|NC_005838.1_198858_199773_+,NA|77aa|down_8|NC_005838.1_204973_205204_-	NA|133aa|up_9|NC_005838.1_181644_182043_-	cd18682, PIN_VapC-like, Uncharacterized subfamily of the VapC (virulence-associated protein C)-like family of the PIN domain superfamily	NA|88aa|up_8|NC_005838.1_182035_182299_-	smart00966, SpoVT_AbrB, SpoVT / AbrB like domain	NA|73aa|up_7|NC_005838.1_182599_182818_+	NA	NA|139aa|up_6|NC_005838.1_184912_185329_+	NA	NA|604aa|up_5|NC_005838.1_185358_187170_+	NA	NA|123aa|up_4|NC_005838.1_187225_187594_-	NA	NA|552aa|up_3|NC_005838.1_187659_189315_+	cd18807, SF1_C_UvrD, C-terminal helicase domain of UvrD family helicases	NA|76aa|up_2|NC_005838.1_189374_189602_+	NA	NA|130aa|up_1|NC_005838.1_189588_189978_+	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|54aa|up_0|NC_005838.1_189983_190145_-	NA	cas2|95aa|down_0|NC_005838.1_192597_192882_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|326aa|down_1|NC_005838.1_192878_193856_-	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	cas4|195aa|down_2|NC_005838.1_193846_194431_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	WYL|328aa|down_3|NC_005838.1_194795_195779_+	pfam13280, WYL, WYL domain	cas8b5|767aa|down_4|NC_005838.1_195796_198097_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	cas5|305aa|down_5|NC_005838.1_198858_199773_+	NA	cas6|265aa|down_6|NC_005838.1_202188_202983_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|138aa|down_7|NC_005838.1_204563_204977_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|77aa|down_8|NC_005838.1_204973_205204_-	NA	NA|322aa|down_9|NC_005838.1_205467_206433_+	COG4974, XerD, Site-specific recombinase XerD [DNA replication, recombination, and repair]
GCF_000008125.1_ASM812v1	NC_005838	Thermus thermophilus HB27 plasmid pTT27, complete sequence	8	203222-204195	7,7,8	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,WYL,cas8b5,cas5,cas6	cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,DinG,cas3,cas5,cas8c,cas7b,cas1,cas4,WYL,cas8b5,cas6	Unclear	GTTGCAAACCTCGTTAGCCTCGTAGAGGATTGAAAC,GTTGCAAACCTCGTTAGCCTCGTAGAGGATTGAAAC,GTTTCAATCCTCTACGAGGCTAACGAGGTTTGCAAC	36,36,36	0	0	NA	NA	NA:NA:NA	13,13,11	13	Unclear	DEDDh,csa3,cas3,Cas9_archaeal,cas2,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,DinG,cas5,cas8c,cas7b,cas1,cas4,WYL,cas8b5	NA|76aa|up_9|NC_005838.1_189374_189602_+,NA|54aa|up_7|NC_005838.1_189983_190145_-,cas5|305aa|up_1|NC_005838.1_198858_199773_+,NA|77aa|down_1|NC_005838.1_204973_205204_-,NA|50aa|down_3|NC_005838.1_206966_207116_+,NA|80aa|down_9|NC_005838.1_213421_213661_+	NA|76aa|up_9|NC_005838.1_189374_189602_+	NA	NA|130aa|up_8|NC_005838.1_189588_189978_+	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|54aa|up_7|NC_005838.1_189983_190145_-	NA	cas2|95aa|up_6|NC_005838.1_192597_192882_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|326aa|up_5|NC_005838.1_192878_193856_-	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	cas4|195aa|up_4|NC_005838.1_193846_194431_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	WYL|328aa|up_3|NC_005838.1_194795_195779_+	pfam13280, WYL, WYL domain	cas8b5|767aa|up_2|NC_005838.1_195796_198097_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	cas5|305aa|up_1|NC_005838.1_198858_199773_+	NA	cas6|265aa|up_0|NC_005838.1_202188_202983_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|138aa|down_0|NC_005838.1_204563_204977_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|77aa|down_1|NC_005838.1_204973_205204_-	NA	NA|322aa|down_2|NC_005838.1_205467_206433_+	COG4974, XerD, Site-specific recombinase XerD [DNA replication, recombination, and repair]	NA|50aa|down_3|NC_005838.1_206966_207116_+	NA	NA|157aa|down_4|NC_005838.1_207112_207583_+	cd09874, PIN_MT3492-like, VapC-like PIN domain of the hypothetical protein MT3492 of Mycobacterium tuberculosis CDC1551 and other uncharacterized, annotated PilT protein domain proteins	NA|543aa|down_5|NC_005838.1_207698_209327_-	COG5421, COG5421, Transposase [DNA replication, recombination, and repair]	NA|66aa|down_6|NC_005838.1_209336_209534_-	pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat	NA|407aa|down_7|NC_005838.1_209852_211073_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|318aa|down_8|NC_005838.1_211679_212633_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|80aa|down_9|NC_005838.1_213421_213661_+	NA
GCF_000008125.1_ASM812v1	NC_005838	Thermus thermophilus HB27 plasmid pTT27, complete sequence	9	212645-213370	8,8,9	CRISPRCasFinder,CRT,PILER-CR	no	cas1,cas4,WYL,cas8b5,cas5,cas6	cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,DinG,cas3,cas5,cas8c,cas7b,cas1,cas4,WYL,cas8b5,cas6	Unclear	GTCGCAATCCCCTTACGGGGCTCAATCCCTTGCAAC,GTCGCAATCCCCTTACGGGGCTCAATCCCTTGCAAC,GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC	36,36,36	0	0	NA	NA	III-A:III-A:III-A	9,9,8	9	Unclear	DEDDh,csa3,cas3,Cas9_archaeal,cas2,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,DinG,cas5,cas8c,cas7b,cas1,cas4,WYL,cas8b5	NA|77aa|up_7|NC_005838.1_204973_205204_-,NA|50aa|up_5|NC_005838.1_206966_207116_+,NA|80aa|down_0|NC_005838.1_213421_213661_+	cas6|265aa|up_9|NC_005838.1_202188_202983_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|138aa|up_8|NC_005838.1_204563_204977_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|77aa|up_7|NC_005838.1_204973_205204_-	NA	NA|322aa|up_6|NC_005838.1_205467_206433_+	COG4974, XerD, Site-specific recombinase XerD [DNA replication, recombination, and repair]	NA|50aa|up_5|NC_005838.1_206966_207116_+	NA	NA|157aa|up_4|NC_005838.1_207112_207583_+	cd09874, PIN_MT3492-like, VapC-like PIN domain of the hypothetical protein MT3492 of Mycobacterium tuberculosis CDC1551 and other uncharacterized, annotated PilT protein domain proteins	NA|543aa|up_3|NC_005838.1_207698_209327_-	COG5421, COG5421, Transposase [DNA replication, recombination, and repair]	NA|66aa|up_2|NC_005838.1_209336_209534_-	pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat	NA|407aa|up_1|NC_005838.1_209852_211073_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|318aa|up_0|NC_005838.1_211679_212633_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|80aa|down_0|NC_005838.1_213421_213661_+	NA	NA|167aa|down_1|NC_005838.1_214290_214791_+	pfam01551, Peptidase_M23, Peptidase family M23	NA|174aa|down_2|NC_005838.1_214809_215331_+	pfam00932, LTD, Lamin Tail Domain	NA|265aa|down_3|NC_005838.1_215438_216233_+	cd10802, YdjC_TTHB029_like, Thermus thermophiles TTHB029 and similar proteins	NA|418aa|down_4|NC_005838.1_216246_217500_+	cd17332, MFS_MelB_like, Salmonella enterica Na+/melibiose symporter MelB and similar transporters of the Major Facilitator Superfamily	NA|575aa|down_5|NC_005838.1_217502_219227_+	PRK10150, PRK10150, beta-D-glucuronidase; Provisional	NA|777aa|down_6|NC_005838.1_219289_221620_+	COG1501, COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]	NA|683aa|down_7|NC_005838.1_221616_223665_+	COG3250, LacZ, Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]	NA|421aa|down_8|NC_005838.1_223664_224927_+	cd17332, MFS_MelB_like, Salmonella enterica Na+/melibiose symporter MelB and similar transporters of the Major Facilitator Superfamily	NA|872aa|down_9|NC_005838.1_225273_227889_-	COG3947, COG3947, Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
