The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_005362	Lactobacillus johnsonii NCC 533, complete sequence	1992676	269932	374448	1992676	integrase,terminase,protease,tail,capsid,portal,tRNA,head,holin,transposase	Lactobacillus_prophage(72.58%)	105	267727:267743	332177:332193
267727:267743	attL	AACACCTGAACAGAAAA	NA	NA	NA	NA
WP_080502234.1|269932_270670_+|integrase	site-specific integrase	integrase	A0A1X9I5Y5	Streptococcus_phage	29.4	4.7e-13
WP_004898779.1|270803_271196_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011161428.1|271400_272033_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011161429.1|272193_272703_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_080502235.1|272861_272954_-|holin	putative holin-like toxin	holin	NA	NA	NA	NA
WP_044496592.1|273127_274105_-	helix-turn-helix transcriptional regulator	NA	A0A0A8WJE4	Clostridium_phage	36.2	8.7e-07
WP_011161431.1|274191_274788_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_011161432.1|274789_275323_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004045666.1|275533_275947_+	YjdF family protein	NA	NA	NA	NA	NA
WP_080502236.1|276132_276225_-|holin	putative holin-like toxin	holin	NA	NA	NA	NA
WP_011161433.1|276508_277663_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011161434.1|277845_278691_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.9	5.4e-21
WP_011161435.1|278690_279557_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011161436.1|279546_279996_+	LytTR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004898815.1|279997_280387_+	DUF3021 domain-containing protein	NA	NA	NA	NA	NA
WP_011161437.1|280411_280915_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_011161439.1|281181_282180_-	NADP-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_011161440.1|282157_282607_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_044496724.1|282930_283404_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	A0A2P1EI66	Megavirus	43.6	2.1e-22
WP_011161442.1|284066_284582_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004898842.1|284894_285155_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011161443.1|285201_285915_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_011161444.1|286001_286454_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011161445.1|286573_287332_-	NADPH-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_011161446.1|287472_288888_-	C69 family dipeptidase	NA	NA	NA	NA	NA
WP_011161447.1|288965_289793_-	AraC family ligand binding domain-containing protein	NA	NA	NA	NA	NA
WP_011161448.1|290013_291975_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_011161449.1|291958_294157_+	alpha-galactosidase	NA	NA	NA	NA	NA
WP_011161450.1|294168_295611_+	sucrose phosphorylase	NA	NA	NA	NA	NA
WP_011161451.1|295758_296994_+	serine hydroxymethyltransferase	NA	A0A219Y950	Aeromonas_phage	50.8	3.7e-95
WP_011161452.1|297279_298272_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_011161453.1|298268_299168_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_011161454.1|299160_299925_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	28.6	9.8e-14
WP_011161455.1|300029_301628_+	APC family permease	NA	NA	NA	NA	NA
WP_004898881.1|301744_301996_+	type B 50S ribosomal protein L31	NA	NA	NA	NA	NA
WP_011161456.1|302158_303526_+	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA	NA
WP_011161457.1|303541_304996_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	41.3	1.1e-74
WP_011161458.1|305071_305431_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_011161459.1|305430_306561_+	alanine racemase	NA	A0A0P0YM39	Yellowstone_lake_mimivirus	27.4	6.1e-28
WP_011161460.1|306625_307306_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_004898900.1|307452_308424_-	L-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_011161461.1|308536_309586_-|transposase	IS30-like element ISLjo1 family transposase	transposase	H7BWC8	unidentified_phage	35.1	9.2e-47
WP_011161462.1|309810_310368_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_011161463.1|310369_313867_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
WP_011161464.1|313884_314127_+	RNA-binding S4 domain-containing protein	NA	NA	NA	NA	NA
WP_004895915.1|314215_314593_+	septum formation initiator family protein	NA	NA	NA	NA	NA
WP_011161465.1|314592_314949_+	S1 RNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_004898910.1|314971_316267_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	E3T4I1	Cafeteria_roenbergensis_virus	23.8	2.2e-10
WP_011161466.1|316350_318477_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	A0A0P0CCN8	Ostreococcus_mediterraneus_virus	42.2	5.3e-110
WP_011161467.1|318547_321235_+	YfhO family protein	NA	NA	NA	NA	NA
WP_011161468.1|321297_323940_+	YfhO family protein	NA	NA	NA	NA	NA
WP_011161469.1|323993_324869_+	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA	NA
WP_011161470.1|324928_325936_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_011161471.1|325950_327492_+|tRNA	lysine--tRNA ligase	tRNA	A0A2K9KZX5	Tupanvirus	39.7	2.1e-84
WP_011161472.1|327893_329069_-|integrase	site-specific integrase	integrase	Q6SEA7	Lactobacillus_prophage	100.0	2.9e-222
WP_011161473.1|329224_329749_-	Ltp family lipoprotein	NA	Q6SEA6	Lactobacillus_prophage	100.0	2.3e-38
WP_011161474.1|329841_330372_-	hypothetical protein	NA	Q6SEA5	Lactobacillus_prophage	100.0	5.4e-96
WP_011161475.1|330482_331268_-	DUF1828 domain-containing protein	NA	Q6SEA4	Lactobacillus_prophage	100.0	8.8e-143
WP_011161476.1|331239_331698_-	hypothetical protein	NA	Q6SEA3	Lactobacillus_prophage	100.0	2.4e-84
WP_011161477.1|331778_332201_-	ImmA/IrrE family metallo-endopeptidase	NA	Q6SEA2	Lactobacillus_prophage	100.0	1.8e-78
332177:332193	attR	TTTTCTGTTCAGGTGTT	NA	NA	NA	NA
WP_004896966.1|332204_332558_-	helix-turn-helix transcriptional regulator	NA	Q6SEA1	Lactobacillus_prophage	100.0	9.6e-57
WP_011161478.1|332730_332934_+	helix-turn-helix transcriptional regulator	NA	Q6SEA0	Lactobacillus_prophage	100.0	8.8e-31
WP_011161479.1|332971_333721_+	phage antirepressor Ant	NA	Q6SE99	Lactobacillus_prophage	100.0	4.6e-141
WP_044496728.1|333795_334011_+	helix-turn-helix transcriptional regulator	NA	Q6SE98	Lactobacillus_prophage	100.0	6.9e-34
WP_011161481.1|334135_334345_+	helix-turn-helix domain-containing protein	NA	Q6SE97	Lactobacillus_prophage	100.0	2.2e-32
WP_044496613.1|334662_334815_+	hypothetical protein	NA	Q20DG5	Lactobacillus_phage	82.0	2.5e-14
WP_011161483.1|334859_335225_+	hypothetical protein	NA	Q6SE95	Lactobacillus_prophage	100.0	2.1e-67
WP_011161484.1|335236_336136_+	DUF1351 domain-containing protein	NA	Q6SE94	Lactobacillus_prophage	100.0	1.0e-163
WP_011161485.1|336138_336975_+	ERF family protein	NA	Q6SE93	Lactobacillus_prophage	100.0	6.0e-150
WP_011161486.1|336984_337719_+	helix-turn-helix domain-containing protein	NA	Q6SE92	Lactobacillus_prophage	100.0	7.5e-120
WP_011161487.1|337708_337993_+	hypothetical protein	NA	Q6SE91	Lactobacillus_prophage	100.0	1.1e-50
WP_011161488.1|338128_338965_+	phage antirepressor Ant	NA	Q6SE90	Lactobacillus_prophage	100.0	6.7e-157
WP_044496616.1|338978_339164_+	hypothetical protein	NA	Q20DF6	Lactobacillus_phage	72.9	2.5e-16
WP_044496618.1|339350_339842_+	phage related protein	NA	Q6SE89	Lactobacillus_prophage	100.0	1.7e-88
WP_011161490.1|341278_342334_+	hypothetical protein	NA	Q6SE88	Lactobacillus_prophage	100.0	7.5e-206
WP_011161491.1|342311_342692_+	ASCH domain-containing protein	NA	Q6SE87	Lactobacillus_prophage	100.0	1.2e-65
WP_011161492.1|342713_343310_+	hypothetical protein	NA	Q6SE86	Lactobacillus_prophage	100.0	3.4e-107
WP_011161493.1|343362_344217_+|terminase	terminase small subunit	terminase	Q6SE85	Lactobacillus_prophage	100.0	1.8e-149
WP_011161494.1|344203_345478_+|terminase	PBSX family phage terminase large subunit	terminase	Q6SE84	Lactobacillus_prophage	100.0	1.5e-256
WP_011161495.1|345493_346993_+|portal	phage portal protein	portal	Q6SE83	Lactobacillus_prophage	100.0	5.2e-285
WP_011161496.1|346922_347210_+|protease	ribosomal-processing cysteine protease Prp	protease	Q6SE82	Lactobacillus_prophage	100.0	3.0e-48
WP_011161497.1|347216_348299_+|capsid	minor capsid protein	capsid	Q6SE81	Lactobacillus_prophage	100.0	2.8e-200
WP_011161498.1|348453_349098_+	DUF4355 domain-containing protein	NA	Q6SE80	Lactobacillus_prophage	100.0	2.1e-110
WP_011161499.1|349110_349476_+	hypothetical protein	NA	Q6SE79	Lactobacillus_prophage	100.0	7.1e-63
WP_011161500.1|349496_350546_+|capsid	major capsid protein	capsid	Q6SE78	Lactobacillus_prophage	100.0	4.5e-195
WP_011161501.1|350555_350873_+|head,tail	phage head-tail connector protein	head,tail	Q6SE77	Lactobacillus_prophage	100.0	6.0e-50
WP_011161502.1|350869_351223_+	hypothetical protein	NA	Q6SE76	Lactobacillus_prophage	100.0	6.2e-64
WP_011161503.1|351215_351764_+	HK97 gp10 family phage protein	NA	Q6SE75	Lactobacillus_prophage	100.0	1.9e-99
WP_011161504.1|351764_352133_+	hypothetical protein	NA	Q6SE74	Lactobacillus_prophage	100.0	2.7e-62
WP_011161505.1|352135_352615_+|tail	tail protein	tail	Q6SE73	Lactobacillus_prophage	100.0	3.6e-83
WP_011161506.1|352692_353103_+	hypothetical protein	NA	Q6SE72	Lactobacillus_prophage	100.0	1.1e-69
WP_011161507.1|353195_353489_+	hypothetical protein	NA	Q6SE71	Lactobacillus_prophage	100.0	1.4e-48
WP_011161508.1|353488_359554_+	lytic transglycosylase	NA	Q6SE70	Lactobacillus_prophage	100.0	0.0e+00
WP_004897007.1|359571_359928_+	hypothetical protein	NA	Q6SE69	Lactobacillus_prophage	100.0	1.3e-61
WP_011161509.1|359941_364816_+	hypothetical protein	NA	Q6SE68	Lactobacillus_prophage	100.0	0.0e+00
WP_167315937.1|364808_364964_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011161510.1|364947_365208_+	hypothetical protein	NA	Q6SE67	Lactobacillus_prophage	100.0	1.0e-39
WP_011161511.1|365207_365615_+	hypothetical protein	NA	Q6SE66	Lactobacillus_prophage	100.0	3.3e-69
WP_011161512.1|365624_365882_+	hypothetical protein	NA	Q6SE65	Lactobacillus_prophage	100.0	3.3e-38
WP_011161513.1|365874_366222_+|holin	phage holin	holin	Q6SE64	Lactobacillus_prophage	100.0	2.1e-56
WP_011161514.1|366214_367147_+	SH3 domain-containing protein	NA	Q6SE63	Lactobacillus_prophage	100.0	5.1e-182
WP_148138677.1|367394_367499_-	type I toxin-antitoxin system Fst family toxin	NA	Q65YV5	Lactobacillus_phage	85.3	8.2e-09
WP_011161515.1|367572_367791_+	hypothetical protein	NA	Q6SE62	Lactobacillus_prophage	100.0	3.5e-33
WP_011161516.1|368142_370611_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A223W0B1	Agrobacterium_phage	33.1	3.4e-124
WP_044496625.1|370809_374448_+	DNA-directed RNA polymerase subunit beta	NA	A0A1B1ISA9	uncultured_Mediterranean_phage	25.2	6.7e-52
>prophage 2
NC_005362	Lactobacillus johnsonii NCC 533, complete sequence	1992676	662959	675693	1992676	protease,bacteriocin,transposase	Bacillus_phage(50.0%)	13	NA	NA
WP_011161707.1|662959_664117_+|transposase	transposase	transposase	C1KFS0	Lactobacillus_virus	43.3	1.5e-82
WP_011161708.1|664314_665112_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_011161709.1|665124_667284_+	peptide cleavage/export ABC transporter	NA	W8CYL7	Bacillus_phage	27.5	3.8e-47
WP_011161710.1|667294_667888_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_011161711.1|668014_668242_+|bacteriocin	bacteriocin lactacin-F subunit LafA	bacteriocin	NA	NA	NA	NA
WP_011161712.1|668252_668441_+|bacteriocin	Blp family class II bacteriocin	bacteriocin	NA	NA	NA	NA
WP_011161713.1|668527_668902_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011161461.1|669261_670311_+|transposase	IS30-like element ISLjo1 family transposase	transposase	H7BWC8	unidentified_phage	35.1	9.2e-47
WP_011161716.1|670865_673025_+	peptide cleavage/export ABC transporter	NA	W8CYL7	Bacillus_phage	26.7	8.5e-47
WP_011161717.1|673035_673629_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_011161718.1|673778_673973_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011161719.1|674085_674376_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_152023290.1|674730_675693_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
>prophage 3
NC_005362	Lactobacillus johnsonii NCC 533, complete sequence	1992676	1008720	1019082	1992676	protease,tRNA	Moraxella_phage(16.67%)	9	NA	NA
WP_011161944.1|1008720_1010172_+	S41 family peptidase	NA	A0A0R6PIZ1	Moraxella_phage	28.0	4.7e-09
WP_011161945.1|1010174_1011014_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA	NA
WP_011161946.1|1011010_1011763_+	ribonuclease HII	NA	D2TEQ2	Emiliania_huxleyi_virus	37.7	3.2e-25
WP_011161947.1|1011815_1012661_+	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	37.7	8.3e-30
WP_011161948.1|1012726_1014808_+	type I DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	36.3	2.1e-98
WP_011161949.1|1014905_1016222_+|tRNA	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	tRNA	NA	NA	NA	NA
WP_011161950.1|1016224_1017148_+	tyrosine recombinase XerC	NA	S5W9T9	Leptospira_phage	29.2	2.2e-23
WP_004894572.1|1017152_1017677_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_011161951.1|1017687_1019082_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A1B2IB03	Erwinia_phage	26.1	2.1e-30
>prophage 4
NC_005362	Lactobacillus johnsonii NCC 533, complete sequence	1992676	1260690	1330377	1992676	terminase,integrase,tail,portal,tRNA,head,holin	Lactobacillus_prophage(83.64%)	74	1285375:1285392	1332266:1332283
WP_011162151.1|1260690_1262544_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	23.7	1.5e-07
WP_004897182.1|1262545_1263832_-|tRNA	histidine--tRNA ligase	tRNA	A0A1V0S921	Catovirus	27.2	1.8e-28
WP_011162152.1|1264114_1264552_-|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
WP_011162153.1|1264551_1266801_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1X9SH80	Bradyrhizobium_phage	41.4	5.6e-09
WP_004897179.1|1266818_1267199_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011162154.1|1267231_1268179_-	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA	NA
WP_011162155.1|1268241_1268745_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_011162157.1|1270655_1272347_-	cell division protein	NA	NA	NA	NA	NA
WP_011162158.1|1272426_1274856_-	HAD-IC family P-type ATPase	NA	M1I547	Acanthocystis_turfacea_Chlorella_virus	25.1	1.1e-39
WP_011162159.1|1274872_1275898_-	asparaginase	NA	NA	NA	NA	NA
WP_011162160.1|1275988_1277371_-	threonine/serine exporter family protein	NA	NA	NA	NA	NA
WP_011162161.1|1277479_1278406_-	L-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_011162162.1|1278485_1279859_-	flavocytochrome c	NA	M1HTN0	Paramecium_bursaria_Chlorella_virus	31.0	8.4e-48
WP_011162163.1|1279873_1281280_-	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_011162164.1|1281417_1282119_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_011162165.1|1282111_1283161_-	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.0	1.6e-30
WP_011162166.1|1283177_1284032_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_011162167.1|1284449_1285154_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011162168.1|1285153_1286005_+	DNA/RNA non-specific endonuclease	NA	NA	NA	NA	NA
1285375:1285392	attL	TCAAAAGCAATTAAAAAA	NA	NA	NA	NA
WP_011162169.1|1286233_1286623_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_011162170.1|1286672_1287653_-	choloylglycine hydrolase family protein	NA	M1HS66	Paramecium_bursaria_Chlorella_virus	30.5	3.5e-24
WP_011162173.1|1289439_1289721_-	membrane protein	NA	NA	NA	NA	NA
WP_004897160.1|1289834_1291121_-	phosphopyruvate hydratase	NA	A0A1X9I5Z8	Streptococcus_phage	51.7	2.6e-107
WP_011162174.1|1291298_1291883_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_011162175.1|1292552_1293500_-	lysin	NA	Q6SEB5	Lactobacillus_prophage	100.0	3.7e-180
WP_011162176.1|1293511_1293910_-|holin	phage holin	holin	Q6SEB6	Lactobacillus_prophage	100.0	1.7e-62
WP_011162177.1|1293909_1294122_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011162178.1|1294096_1294318_-	hypothetical protein	NA	Q6SEB8	Lactobacillus_prophage	100.0	5.5e-34
WP_011162179.1|1294385_1294787_-	hypothetical protein	NA	Q6SEB9	Lactobacillus_prophage	100.0	4.1e-72
WP_011162180.1|1294788_1297467_-	SGNH/GDSL hydrolase family protein	NA	Q6SEC0	Lactobacillus_prophage	100.0	0.0e+00
WP_011162181.1|1297447_1297840_-	hypothetical protein	NA	Q6SEC1	Lactobacillus_prophage	100.0	1.5e-66
WP_011162182.1|1297832_1300223_-|tail	phage tail protein	tail	Q6SEC2	Lactobacillus_prophage	100.0	0.0e+00
WP_011162183.1|1300222_1301032_-	hypothetical protein	NA	Q6SEC3	Lactobacillus_prophage	100.0	3.5e-155
WP_011162184.1|1301031_1305666_-	tape measure protein	NA	Q6SEC4	Lactobacillus_prophage	100.0	0.0e+00
WP_004895181.1|1305665_1306007_-	hypothetical protein	NA	Q6SEC5	Lactobacillus_prophage	100.0	1.0e-55
WP_011162185.1|1306030_1306411_-|tail	tail protein	tail	Q6SEC6	Lactobacillus_prophage	100.0	6.7e-64
WP_011162186.1|1306468_1307038_-|tail	phage major tail protein, TP901-1 family	tail	Q6SEC7	Lactobacillus_prophage	100.0	7.1e-102
WP_011162187.1|1307051_1307429_-	hypothetical protein	NA	Q6SEC8	Lactobacillus_prophage	100.0	4.4e-68
WP_011162188.1|1307498_1307777_-	HK97 gp10 family phage protein	NA	Q6SEC9	Lactobacillus_prophage	100.0	2.3e-45
WP_011162189.1|1307763_1308042_-	hypothetical protein	NA	Q6SED0	Lactobacillus_prophage	100.0	4.2e-47
WP_004895189.1|1308010_1308385_-|head,tail	phage head-tail connector protein	head,tail	Q6SED1	Lactobacillus_prophage	100.0	7.8e-65
WP_011162190.1|1308442_1309378_-	hypothetical protein	NA	Q6SED2	Lactobacillus_prophage	100.0	1.8e-174
WP_011162191.1|1309393_1309960_-	DUF4355 domain-containing protein	NA	Q6SED3	Lactobacillus_prophage	100.0	2.1e-93
WP_011162192.1|1310094_1310430_-	YjcQ family protein	NA	Q6SED4	Lactobacillus_prophage	100.0	1.1e-59
WP_011162193.1|1310442_1310676_-|head	head protein	head	Q6SED5	Lactobacillus_prophage	100.0	3.6e-36
WP_011162194.1|1310668_1312108_-	hypothetical protein	NA	Q6SED6	Lactobacillus_prophage	100.0	3.5e-270
WP_011162195.1|1312091_1313504_-|portal	phage portal protein	portal	Q6SED7	Lactobacillus_prophage	100.0	9.2e-276
WP_011162196.1|1313515_1314784_-|terminase	PBSX family phage terminase large subunit	terminase	Q9AZ91	Lactobacillus_prophage	100.0	6.4e-252
WP_011162197.1|1314776_1315232_-|terminase	terminase small subunit	terminase	Q6SED9	Lactobacillus_prophage	100.0	6.1e-80
WP_004895198.1|1315288_1315945_-	hypothetical protein	NA	Q20DE0	Lactobacillus_phage	99.1	3.7e-118
WP_004895199.1|1316126_1316651_-	super-infection exclusion protein B	NA	Q6SEE1	Lactobacillus_prophage	100.0	7.2e-93
WP_011162198.1|1317694_1318135_-	hypothetical protein	NA	Q6SEE2	Lactobacillus_prophage	100.0	2.6e-80
WP_011162199.1|1318223_1318445_-	sporulation protein Cse60	NA	NA	NA	NA	NA
WP_011162200.1|1318464_1319019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011162201.1|1319020_1319419_-	hypothetical protein	NA	Q6SEE5	Lactobacillus_prophage	100.0	8.0e-68
WP_011162202.1|1319419_1319635_-	hypothetical protein	NA	Q6SEE6	Lactobacillus_prophage	100.0	1.1e-28
WP_011162203.1|1319794_1320685_-	hypothetical protein	NA	Q6SEE7	Lactobacillus_prophage	100.0	1.1e-168
WP_011162204.1|1320697_1321483_-	ERF family protein	NA	Q6SEE8	Lactobacillus_prophage	100.0	4.6e-144
WP_011162205.1|1321484_1322378_-	DUF1351 domain-containing protein	NA	Q6SE94	Lactobacillus_prophage	47.3	1.3e-62
WP_011162206.1|1322414_1322561_-	hypothetical protein	NA	Q6SEF0	Lactobacillus_prophage	100.0	3.3e-19
WP_011161481.1|1322720_1322930_-	helix-turn-helix domain-containing protein	NA	Q6SE97	Lactobacillus_prophage	100.0	2.2e-32
WP_011162207.1|1323054_1323270_-	helix-turn-helix transcriptional regulator	NA	Q6SE98	Lactobacillus_prophage	67.6	1.3e-19
WP_011162208.1|1323347_1323824_+	DUF2321 domain-containing protein	NA	Q6SEF3	Lactobacillus_prophage	100.0	3.1e-90
WP_011162209.1|1323974_1324736_-	phage repressor protein/antirepressor Ant	NA	Q6SEF4	Lactobacillus_prophage	100.0	8.8e-140
WP_011162210.1|1324763_1324985_-	DUF739 family protein	NA	Q6SEF5	Lactobacillus_prophage	100.0	4.9e-35
WP_011162211.1|1325164_1325602_+	helix-turn-helix domain-containing protein	NA	Q6SEF6	Lactobacillus_prophage	100.0	1.0e-76
WP_011162212.1|1325591_1325996_+	hypothetical protein	NA	Q6SEF7	Lactobacillus_prophage	100.0	1.1e-77
WP_011162213.1|1326051_1326624_+	DUF5067 domain-containing protein	NA	Q6SEF8	Lactobacillus_prophage	100.0	1.2e-85
WP_011162214.1|1326640_1326940_+	hypothetical protein	NA	Q6SEF9	Lactobacillus_prophage	100.0	6.9e-48
WP_011162215.1|1326948_1327245_+	hypothetical protein	NA	Q6SEG0	Lactobacillus_prophage	100.0	9.5e-50
WP_011162216.1|1327269_1327725_+	hypothetical protein	NA	Q6SEG1	Lactobacillus_prophage	100.0	8.5e-82
WP_011162217.1|1327717_1328095_+	hypothetical protein	NA	Q6SEG2	Lactobacillus_prophage	100.0	1.9e-39
WP_011162218.1|1328157_1329033_+	hypothetical protein	NA	Q6SEG3	Lactobacillus_prophage	100.0	1.5e-106
WP_011162219.1|1329201_1330377_+|integrase	site-specific integrase	integrase	Q6SEG4	Lactobacillus_prophage	100.0	2.6e-223
1332266:1332283	attR	TCAAAAGCAATTAAAAAA	NA	NA	NA	NA
>prophage 5
NC_005362	Lactobacillus johnsonii NCC 533, complete sequence	1992676	1603588	1611776	1992676	transposase	Ralstonia_phage(16.67%)	7	NA	NA
WP_011162396.1|1603588_1605595_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	34.9	2.1e-100
WP_011162397.1|1605633_1607880_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	43.1	4.6e-136
WP_011162398.1|1607977_1608604_-	glycoside hydrolase family 73 protein	NA	S5M633	Brevibacillus_phage	44.7	1.4e-26
WP_011162399.1|1608605_1609223_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_011162400.1|1609441_1609900_-	SprT family protein	NA	A0A249XZQ4	Enterococcus_phage	38.4	2.0e-06
WP_011162401.1|1609899_1610601_-	glycosyl transferase	NA	A0A2K9L2U7	Tupanvirus	25.3	1.9e-08
WP_011161461.1|1610726_1611776_+|transposase	IS30-like element ISLjo1 family transposase	transposase	H7BWC8	unidentified_phage	35.1	9.2e-47
