The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_002944	Mycobacterium avium subsp. paratuberculosis K-10, complete sequence	4829781	425976	490829	4829781	tRNA,holin,transposase,protease	uncultured_Mediterranean_phage(17.65%)	59	NA	NA
WP_003877060.1|425976_427170_+|protease	acid resistance serine protease MarP	protease	A0A1B1IRH0	uncultured_Mediterranean_phage	25.0	2.6e-05
WP_003877061.1|427162_428128_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003873292.1|428128_428668_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003873291.1|428861_429560_+	peptidase	NA	NA	NA	NA	NA
WP_003877063.1|429651_431604_-	acetate--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	39.4	5.8e-87
WP_003877064.1|431718_432261_+	DUF4232 domain-containing protein	NA	NA	NA	NA	NA
WP_003877065.1|432354_433971_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003873287.1|433972_434899_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003873286.1|434891_435767_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003873285.1|435763_437410_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.0	8.0e-13
WP_003877070.1|437399_438158_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003877071.1|438623_439481_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_003877072.1|439993_441049_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003873281.1|441045_442221_+	TadA family conjugal transfer-associated ATPase	NA	NA	NA	NA	NA
WP_003873280.1|442217_443021_+	type II secretion system F family protein	NA	NA	NA	NA	NA
WP_003873279.1|443028_443631_+	type II secretion system F family protein	NA	NA	NA	NA	NA
WP_003873278.1|443649_443850_+	DUF4244 domain-containing protein	NA	NA	NA	NA	NA
WP_187326362.1|443846_444176_+	pilus biosynthesis protein TadE	NA	NA	NA	NA	NA
WP_031351306.1|444192_444501_+	helicase	NA	NA	NA	NA	NA
WP_010948853.1|444497_445535_-	DUF5593 domain-containing protein	NA	NA	NA	NA	NA
WP_003873274.1|445666_447997_-	DEAD/DEAH box helicase	NA	A0A1B1IUF6	uncultured_Mediterranean_phage	27.1	5.1e-05
WP_003419650.1|448245_448449_+	cold shock protein CspA	NA	A0A1X9IGI9	Lactococcus_phage	56.2	2.0e-14
WP_003877078.1|448637_449228_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003877079.1|449432_452231_+	type I DNA topoisomerase	NA	A0A2K9L5F8	Tupanvirus	30.4	3.6e-98
WP_010948854.1|452227_453889_-	HAMP domain-containing protein	NA	A0A1B1IWY2	uncultured_Mediterranean_phage	32.8	8.4e-18
WP_003877081.1|453986_455192_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_010948855.1|455419_456607_+|transposase	IS481-like element ISMav5 family transposase	transposase	NA	NA	NA	NA
WP_003877084.1|456761_458570_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016705619.1|458535_459477_+	GDP-mannose 4,6-dehydratase	NA	A0A2K9L0I7	Tupanvirus	34.8	2.7e-37
WP_003873266.1|459473_459815_-	DUF2304 domain-containing protein	NA	NA	NA	NA	NA
WP_003873265.1|459811_460513_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003873264.1|460548_461799_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019306255.1|461926_463015_+	DUF475 domain-containing protein	NA	A0A172Q0Y5	Acinetobacter_phage	41.3	1.1e-53
WP_010948858.1|462995_463484_-	inorganic diphosphatase	NA	A0A2H4J8U1	uncultured_Caudovirales_phage	44.4	3.6e-30
WP_010948859.1|463605_464991_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_003873260.1|464987_466061_+|protease	zinc-dependent metalloprotease	protease	NA	NA	NA	NA
WP_003877090.1|466039_467002_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
WP_003873258.1|467007_467664_+	hypoxanthine phosphoribosyltransferase	NA	A0A1V0SEQ1	Hokovirus	26.4	2.2e-06
WP_003877092.1|467671_468421_-	SIMPL domain-containing protein	NA	NA	NA	NA	NA
WP_003873256.1|468734_469034_+	PE family protein	NA	NA	NA	NA	NA
WP_010948861.1|470314_471895_-	HNH endonuclease	NA	NA	NA	NA	NA
WP_003873252.1|471924_472938_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003877096.1|472937_474125_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_170936826.1|474121_475087_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003875603.1|475190_475604_+	VOC family protein	NA	NA	NA	NA	NA
WP_003877098.1|475876_478276_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	E5EQU5	Bathycoccus_sp._RCC1105_virus	44.9	4.3e-108
WP_003877099.1|478292_478907_+	GTP cyclohydrolase I FolE	NA	E7DN69	Pneumococcus_phage	53.9	6.6e-45
WP_003875606.1|478926_479730_+	dihydropteroate synthase	NA	S4W084	Pandoravirus	33.0	3.9e-21
WP_003875607.1|479722_480124_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010948864.1|480232_480781_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_003875609.1|480780_481257_+	DUF3180 domain-containing protein	NA	NA	NA	NA	NA
WP_010948865.1|481344_482733_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003875611.1|482848_483760_+	DUF2520 domain-containing protein	NA	NA	NA	NA	NA
WP_003875612.1|483756_484683_+	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003875613.1|484682_485114_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_003875614.1|485116_485932_+	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_003877103.1|485979_487479_+|tRNA	lysine--tRNA ligase	tRNA	A0A2K9KZX5	Tupanvirus	36.6	3.3e-74
WP_003875617.1|487622_487961_+	iron-regulated nucleoid-associated protein Lsr2	NA	A0A2D1GPL8	Mycobacterium_phage	41.5	2.1e-16
WP_010948866.1|488297_490829_+|protease	ATP-dependent protease ATP-binding subunit ClpC	protease	K4FB40	Cronobacter_phage	39.7	3.0e-128
>prophage 2
NC_002944	Mycobacterium avium subsp. paratuberculosis K-10, complete sequence	4829781	3447753	3454325	4829781		Bacillus_phage(33.33%)	7	NA	NA
WP_019305874.1|3447753_3449871_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	V9VI16	Lactococcus_phage	51.6	7.2e-208
WP_003874934.1|3449888_3450341_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A142F1R4	Bacillus_phage	37.7	1.7e-13
WP_003874933.1|3450383_3450623_-	redoxin NrdH	NA	V5UN81	Mycobacterium_phage	64.5	2.0e-21
WP_003874932.1|3451152_3451707_-	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	33.6	5.4e-06
WP_003874931.1|3451800_3452415_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003874930.1|3452414_3453458_+	DNA polymerase IV	NA	F1C5A5	Cronobacter_phage	27.9	1.1e-18
WP_003874929.1|3453392_3454325_-	SDR family oxidoreductase	NA	W8CYX9	Bacillus_phage	35.9	5.9e-05
