assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000007685.1_ASM768v1	NC_005823	Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 chromosome I, complete sequence	1	442732-442824	1	CRISPRCasFinder	no		WYL,csa3,cas3,cas5,cas7,cas8b3,cas6,cas2,DinG,cas8c,cas4,cas1,Cas9_archaeal	Orphan	AACGCTCTTTATGAATCGCGTTG	23	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,cas5,cas7,cas8b3,cas6,cas2,DinG,cas8c,cas4,cas1,Cas9_archaeal	NA|169aa|up_8|NC_005823.1_429403_429910_+,NA|71aa|up_4|NC_005823.1_435851_436064_+,NA|673aa|up_3|NC_005823.1_436230_438249_+,NA|282aa|up_2|NC_005823.1_438914_439760_-,NA|57aa|down_1|NC_005823.1_444973_445144_+,NA|65aa|down_5|NC_005823.1_450507_450702_-,NA|97aa|down_8|NC_005823.1_454286_454577_+	NA|116aa|up_9|NC_005823.1_429053_429401_+	TIGR03433, padR_acidobact, transcriptional regulator, Acidobacterial, PadR-family	NA|169aa|up_8|NC_005823.1_429403_429910_+	NA	NA|182aa|up_7|NC_005823.1_429917_430463_+	pfam06445, GyrI-like, GyrI-like small molecule binding domain	NA|566aa|up_6|NC_005823.1_431901_433599_-	cd01154, AidB, Proteins involved in DNA damage response, similar to the AidB gene product	NA|553aa|up_5|NC_005823.1_434194_435853_-	cd16010, iPGM, 2 3 bisphosphoglycerate independent phosphoglycerate mutase iPGM	NA|71aa|up_4|NC_005823.1_435851_436064_+	NA	NA|673aa|up_3|NC_005823.1_436230_438249_+	NA	NA|282aa|up_2|NC_005823.1_438914_439760_-	NA	NA|183aa|up_1|NC_005823.1_439863_440412_+	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|350aa|up_0|NC_005823.1_440571_441621_+	pfam04773, FecR, FecR protein	NA|150aa|down_0|NC_005823.1_443204_443654_-	pfam07681, DoxX, DoxX	NA|57aa|down_1|NC_005823.1_444973_445144_+	NA	NA|632aa|down_2|NC_005823.1_445260_447156_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|112aa|down_3|NC_005823.1_447659_447995_+	PRK07411, PRK07411, molybdopterin-synthase adenylyltransferase MoeB	NA|273aa|down_4|NC_005823.1_448497_449316_+	cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain	NA|65aa|down_5|NC_005823.1_450507_450702_-	NA	NA|204aa|down_6|NC_005823.1_451513_452125_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|394aa|down_7|NC_005823.1_452994_454176_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|97aa|down_8|NC_005823.1_454286_454577_+	NA	NA|444aa|down_9|NC_005823.1_454817_456149_-	pfam01510, Amidase_2, N-acetylmuramoyl-L-alanine amidase
GCF_000007685.1_ASM768v1	NC_005823	Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 chromosome I, complete sequence	2	1133848-1134102	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas5,cas7,cas8b3,cas3,cas6,cas2	WYL,csa3,cas3,cas5,cas7,cas8b3,cas6,cas2,DinG,cas8c,cas4,cas1,Cas9_archaeal	Unclear	GTGCTCAACGCCTAACGGCATCAAAGTTATATTCAG,GTGCTCAACGCCTAACGGCATCAAAGTTATATTCAGA,TCCGTGCTCAACGCCTAACGGCATCAAAGTTATATTCAG	36,37,39	0	0	NA	NA	I-A,I-B,II-B:I-A,I-B,II-B:I-A,I-B,II-B	3,3,2	3	Unclear	WYL,csa3,cas3,cas5,cas7,cas8b3,cas6,cas2,DinG,cas8c,cas4,cas1,Cas9_archaeal	NA|61aa|up_6|NC_005823.1_1125290_1125473_+,NA|87aa|up_5|NC_005823.1_1126366_1126627_+,NA|69aa|down_0|NC_005823.1_1134143_1134350_+,NA|71aa|down_4|NC_005823.1_1138743_1138956_+,NA|129aa|down_5|NC_005823.1_1139139_1139526_-,NA|184aa|down_6|NC_005823.1_1139868_1140420_-	NA|384aa|up_9|NC_005823.1_1121248_1122400_-	pfam13166, AAA_13, AAA domain	NA|394aa|up_8|NC_005823.1_1122396_1123578_-	cd17281, RMtype1_S_HpyAXIII_TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Helicobacter pylori 26695 S subunit (S	NA|514aa|up_7|NC_005823.1_1123574_1125116_-	TIGR00497, hsdM, type I restriction system adenine methylase (hsdM)	NA|61aa|up_6|NC_005823.1_1125290_1125473_+	NA	NA|87aa|up_5|NC_005823.1_1126366_1126627_+	NA	cas5|208aa|up_4|NC_005823.1_1127063_1127687_-	TIGR02586, CRISPR-associated_protein_Cas5, CRISPR-associated protein Cas5/DevS, subtype MYXAN	cas7|280aa|up_3|NC_005823.1_1127707_1128547_-	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8b3|629aa|up_2|NC_005823.1_1128611_1130498_-	TIGR03485, hypothetical_protein_L8106_30105, CRISPR-associated protein Cas8a1/Csx13, MYXAN subtype	cas3|751aa|up_1|NC_005823.1_1130505_1132758_-	cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3	cas6|211aa|up_0|NC_005823.1_1132754_1133387_-	TIGR02807, hypothetical_protein_LA_3189, CRISPR-associated protein Cas6, subtype MYXAN	NA|69aa|down_0|NC_005823.1_1134143_1134350_+	NA	cas2|95aa|down_1|NC_005823.1_1134466_1134751_-	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2	cas6|70aa|down_2|NC_005823.1_1136854_1137064_-	pfam09559, Cas6, Cas6 Crispr	NA|296aa|down_3|NC_005823.1_1137594_1138482_-	pfam14284, PcfJ, PcfJ-like protein	NA|71aa|down_4|NC_005823.1_1138743_1138956_+	NA	NA|129aa|down_5|NC_005823.1_1139139_1139526_-	NA	NA|184aa|down_6|NC_005823.1_1139868_1140420_-	NA	NA|499aa|down_7|NC_005823.1_1141561_1143058_-	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|279aa|down_8|NC_005823.1_1143622_1144459_-	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins	NA|602aa|down_9|NC_005823.1_1145948_1147754_-	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE)
GCF_000007685.1_ASM768v1	NC_005823	Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 chromosome I, complete sequence	3	1451041-1451345	3	CRISPRCasFinder	no		WYL,csa3,cas3,cas5,cas7,cas8b3,cas6,cas2,DinG,cas8c,cas4,cas1,Cas9_archaeal	Orphan	TTCCTAAAGAAATAGGGAATTTAAAAAA	28	0	0	NA	NA	NA	4	4	Orphan	WYL,csa3,cas3,cas5,cas7,cas8b3,cas6,cas2,DinG,cas8c,cas4,cas1,Cas9_archaeal	NA|89aa|up_9|NC_005823.1_1438468_1438735_-,NA|349aa|up_7|NC_005823.1_1440812_1441859_+,NA|56aa|up_5|NC_005823.1_1443828_1443996_-,NA|301aa|up_1|NC_005823.1_1447933_1448836_-,NA|237aa|down_4|NC_005823.1_1458231_1458942_+,NA|153aa|down_9|NC_005823.1_1466671_1467130_-	NA|89aa|up_9|NC_005823.1_1438468_1438735_-	NA	NA|423aa|up_8|NC_005823.1_1439444_1440713_+	NF033161, lipo_LipL41, lipoprotein LipL41	NA|349aa|up_7|NC_005823.1_1440812_1441859_+	NA	NA|500aa|up_6|NC_005823.1_1442152_1443652_+	pfam03961, FapA, Flagellar Assembly Protein A	NA|56aa|up_5|NC_005823.1_1443828_1443996_-	NA	NA|365aa|up_4|NC_005823.1_1444814_1445909_-	COG0182, COG0182, Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]	NA|356aa|up_3|NC_005823.1_1445965_1447033_+	COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism]	NA|155aa|up_2|NC_005823.1_1447237_1447702_+	pfam15662, SPATA3, Spermatogenesis-associated protein 3 family	NA|301aa|up_1|NC_005823.1_1447933_1448836_-	NA	NA|161aa|up_0|NC_005823.1_1450368_1450851_+	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|379aa|down_0|NC_005823.1_1452606_1453743_+	cd07574, nitrilase_Rim1_like, Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases)	NA|174aa|down_1|NC_005823.1_1453794_1454316_+	PRK14900, valS, valyl-tRNA synthetase; Provisional	NA|336aa|down_2|NC_005823.1_1455095_1456103_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|200aa|down_3|NC_005823.1_1457271_1457871_+	pfam05345, He_PIG, Putative Ig domain	NA|237aa|down_4|NC_005823.1_1458231_1458942_+	NA	NA|522aa|down_5|NC_005823.1_1460016_1461582_+	cd17470, T3SS_Flik_C, C-terminal domain of flagellar hook-length control protein FliK and similar domains	NA|265aa|down_6|NC_005823.1_1461596_1462391_+	PRK09618, flgD, flagellar hook assembly protein FlgD	NA|465aa|down_7|NC_005823.1_1462418_1463813_+	PRK05682, flgE, flagellar hook protein FlgE; Validated	NA|661aa|down_8|NC_005823.1_1464047_1466030_+	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]	NA|153aa|down_9|NC_005823.1_1466671_1467130_-	NA
GCF_000007685.1_ASM768v1	NC_005823	Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 chromosome I, complete sequence	4	1451455-1451551	4	CRISPRCasFinder	no		WYL,csa3,cas3,cas5,cas7,cas8b3,cas6,cas2,DinG,cas8c,cas4,cas1,Cas9_archaeal	Orphan	TTCCTAAAGAAATAGGGAATTTAAAAAA	28	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,cas5,cas7,cas8b3,cas6,cas2,DinG,cas8c,cas4,cas1,Cas9_archaeal	NA|89aa|up_9|NC_005823.1_1438468_1438735_-,NA|349aa|up_7|NC_005823.1_1440812_1441859_+,NA|56aa|up_5|NC_005823.1_1443828_1443996_-,NA|301aa|up_1|NC_005823.1_1447933_1448836_-,NA|237aa|down_4|NC_005823.1_1458231_1458942_+,NA|153aa|down_9|NC_005823.1_1466671_1467130_-	NA|89aa|up_9|NC_005823.1_1438468_1438735_-	NA	NA|423aa|up_8|NC_005823.1_1439444_1440713_+	NF033161, lipo_LipL41, lipoprotein LipL41	NA|349aa|up_7|NC_005823.1_1440812_1441859_+	NA	NA|500aa|up_6|NC_005823.1_1442152_1443652_+	pfam03961, FapA, Flagellar Assembly Protein A	NA|56aa|up_5|NC_005823.1_1443828_1443996_-	NA	NA|365aa|up_4|NC_005823.1_1444814_1445909_-	COG0182, COG0182, Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]	NA|356aa|up_3|NC_005823.1_1445965_1447033_+	COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism]	NA|155aa|up_2|NC_005823.1_1447237_1447702_+	pfam15662, SPATA3, Spermatogenesis-associated protein 3 family	NA|301aa|up_1|NC_005823.1_1447933_1448836_-	NA	NA|161aa|up_0|NC_005823.1_1450368_1450851_+	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|379aa|down_0|NC_005823.1_1452606_1453743_+	cd07574, nitrilase_Rim1_like, Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases)	NA|174aa|down_1|NC_005823.1_1453794_1454316_+	PRK14900, valS, valyl-tRNA synthetase; Provisional	NA|336aa|down_2|NC_005823.1_1455095_1456103_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|200aa|down_3|NC_005823.1_1457271_1457871_+	pfam05345, He_PIG, Putative Ig domain	NA|237aa|down_4|NC_005823.1_1458231_1458942_+	NA	NA|522aa|down_5|NC_005823.1_1460016_1461582_+	cd17470, T3SS_Flik_C, C-terminal domain of flagellar hook-length control protein FliK and similar domains	NA|265aa|down_6|NC_005823.1_1461596_1462391_+	PRK09618, flgD, flagellar hook assembly protein FlgD	NA|465aa|down_7|NC_005823.1_1462418_1463813_+	PRK05682, flgE, flagellar hook protein FlgE; Validated	NA|661aa|down_8|NC_005823.1_1464047_1466030_+	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]	NA|153aa|down_9|NC_005823.1_1466671_1467130_-	NA
GCF_000007685.1_ASM768v1	NC_005823	Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 chromosome I, complete sequence	5	1615099-1615192	5	CRISPRCasFinder	no		WYL,csa3,cas3,cas5,cas7,cas8b3,cas6,cas2,DinG,cas8c,cas4,cas1,Cas9_archaeal	Orphan	AGGAAAGCGTTGTGTTGAGTTTT	23	1	2	1615122-1615169|1615122-1615169	NC_005823.1_1150902-1150855|NC_005823.1_3356355-3356402	NA	1	1	Orphan	WYL,csa3,cas3,cas5,cas7,cas8b3,cas6,cas2,DinG,cas8c,cas4,cas1,Cas9_archaeal	NA|54aa|up_9|NC_005823.1_1604855_1605017_+,NA|135aa|up_7|NC_005823.1_1607213_1607618_+,NA|53aa|down_9|NC_005823.1_1626472_1626631_+	NA|54aa|up_9|NC_005823.1_1604855_1605017_+	NA	NA|368aa|up_8|NC_005823.1_1605282_1606386_+	TIGR03699, menaquin_MqnC, dehypoxanthine futalosine cyclase	NA|135aa|up_7|NC_005823.1_1607213_1607618_+	NA	NA|410aa|up_6|NC_005823.1_1607601_1608831_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|270aa|up_5|NC_005823.1_1608944_1609754_-	smart00909, Germane, Sporulation and spore germination	NA|225aa|up_4|NC_005823.1_1609797_1610472_-	COG0546, Gph, Predicted phosphatases [General function prediction only]	NA|417aa|up_3|NC_005823.1_1610555_1611806_+	COG1509, KamA, Lysine 2,3-aminomutase [Amino acid transport and metabolism]	NA|375aa|up_2|NC_005823.1_1611798_1612923_+	TIGR01205, D-alanine--D-alanine_ligase, D-alanine--D-alanine ligase	NA|229aa|up_1|NC_005823.1_1612935_1613622_+	pfam14518, Haem_oxygenas_2, Iron-containing redox enzyme	NA|115aa|up_0|NC_005823.1_1613598_1613943_-	pfam04134, DUF393, Protein of unknown function, DUF393	NA|371aa|down_0|NC_005823.1_1615358_1616471_-	PRK04531, PRK04531, acetylglutamate kinase; Provisional	NA|417aa|down_1|NC_005823.1_1616486_1617737_-	PRK11783, rlmL, bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA|156aa|down_2|NC_005823.1_1617733_1618201_-	cd00907, Bacterioferritin, Bacterioferritin, ferritin-like diiron-binding domain	NA|373aa|down_3|NC_005823.1_1618347_1619466_+	cd00829, SCP-x_thiolase, Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2  has multiple roles in intracellular lipid circulation and metabolism	NA|344aa|down_4|NC_005823.1_1619479_1620511_+	cd03789, GT9_LPS_heptosyltransferase, lipopolysaccharide heptosyltransferase and similar proteins	NA|430aa|down_5|NC_005823.1_1620507_1621797_+	cd01087, Prolidase, Prolidase	NA|188aa|down_6|NC_005823.1_1622148_1622712_+	pfam07600, DUF1564, Protein of unknown function (DUF1564)	NA|179aa|down_7|NC_005823.1_1623437_1623974_+	pfam07600, DUF1564, Protein of unknown function (DUF1564)	NA|763aa|down_8|NC_005823.1_1624215_1626504_+	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE)	NA|53aa|down_9|NC_005823.1_1626472_1626631_+	NA
GCF_000007685.1_ASM768v1	NC_005823	Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 chromosome I, complete sequence	6	1691119-1691219	6	CRISPRCasFinder	no		WYL,csa3,cas3,cas5,cas7,cas8b3,cas6,cas2,DinG,cas8c,cas4,cas1,Cas9_archaeal	Orphan	GAGTTCCCACAATTTACACGAGATC	25	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,cas5,cas7,cas8b3,cas6,cas2,DinG,cas8c,cas4,cas1,Cas9_archaeal	NA|289aa|up_7|NC_005823.1_1682692_1683559_-,NA|159aa|down_3|NC_005823.1_1697210_1697687_+,NA|118aa|down_6|NC_005823.1_1700634_1700988_+,NA|351aa|down_7|NC_005823.1_1701033_1702086_+	NA|262aa|up_9|NC_005823.1_1680355_1681141_+	COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only]	NA|399aa|up_8|NC_005823.1_1681147_1682344_+	COG3000, ERG3, Sterol desaturase [Lipid metabolism]	NA|289aa|up_7|NC_005823.1_1682692_1683559_-	NA	NA|742aa|up_6|NC_005823.1_1683621_1685847_+	PRK00044, psd, phosphatidylserine decarboxylase; Reviewed	NA|109aa|up_5|NC_005823.1_1686209_1686536_+	pfam06155, DUF971, Protein of unknown function (DUF971)	NA|355aa|up_4|NC_005823.1_1687103_1688168_+	PRK08119, PRK08119, flagellar motor switch protein; Validated	NA|274aa|up_3|NC_005823.1_1688164_1688986_+	TIGR03500, FliO_TIGR, flagellar biosynthetic protein FliO	NA|268aa|up_2|NC_005823.1_1689018_1689822_+	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed	NA|88aa|up_1|NC_005823.1_1689818_1690082_+	PRK05700, fliQ, flagellar type III secretion system protein FliQ	NA|260aa|up_0|NC_005823.1_1690088_1690868_+	pfam01311, Bac_export_1, Bacterial export proteins, family 1	NA|706aa|down_0|NC_005823.1_1692814_1694932_+	pfam00771, FHIPEP, FHIPEP family	NA|427aa|down_1|NC_005823.1_1694984_1696265_+	PRK12724, PRK12724, flagellar biosynthesis regulator FlhF; Provisional	NA|305aa|down_2|NC_005823.1_1696292_1697207_+	cd02038, FlhG-like, MinD-like ATPase FlhG	NA|159aa|down_3|NC_005823.1_1697210_1697687_+	NA	NA|267aa|down_4|NC_005823.1_1697814_1698615_+	PRK06288, PRK06288, RNA polymerase sigma factor WhiG; Reviewed	NA|662aa|down_5|NC_005823.1_1698640_1700626_+	pfam03961, FapA, Flagellar Assembly Protein A	NA|118aa|down_6|NC_005823.1_1700634_1700988_+	NA	NA|351aa|down_7|NC_005823.1_1701033_1702086_+	NA	NA|94aa|down_8|NC_005823.1_1702085_1702367_+	PRK04323, PRK04323, hypothetical protein; Provisional	NA|194aa|down_9|NC_005823.1_1702363_1702945_+	PRK14737, gmk, guanylate kinase; Provisional
GCF_000007685.1_ASM768v1	NC_005823	Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 chromosome I, complete sequence	7	2011715-2011805	7	CRISPRCasFinder	no		WYL,csa3,cas3,cas5,cas7,cas8b3,cas6,cas2,DinG,cas8c,cas4,cas1,Cas9_archaeal	Orphan	TAGGAAGTGATGCATTGAGTTCA	23	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,cas5,cas7,cas8b3,cas6,cas2,DinG,cas8c,cas4,cas1,Cas9_archaeal	NA|89aa|up_3|NC_005823.1_2006039_2006306_+,NA|100aa|down_0|NC_005823.1_2011882_2012182_-,NA|92aa|down_4|NC_005823.1_2017542_2017818_-,NA|244aa|down_6|NC_005823.1_2018796_2019528_-,NA|209aa|down_7|NC_005823.1_2019558_2020185_-	NA|338aa|up_9|NC_005823.1_1999984_2000998_-	PRK13186, lpxC, UDP-3-O-acyl-N-acetylglucosamine deacetylase	NA|223aa|up_8|NC_005823.1_2001333_2002002_-	cd05325, carb_red_sniffer_like_SDR_c, carbonyl reductase sniffer-like, classical (c) SDRs	NA|222aa|up_7|NC_005823.1_2002084_2002750_+	pfam01987, AIM24, Mitochondrial biogenesis AIM24	NA|225aa|up_6|NC_005823.1_2002765_2003440_+	pfam01987, AIM24, Mitochondrial biogenesis AIM24	NA|227aa|up_5|NC_005823.1_2003452_2004133_+	pfam01987, AIM24, Mitochondrial biogenesis AIM24	NA|366aa|up_4|NC_005823.1_2004458_2005556_-	COG4335, COG4335, DNA alkylation repair enzyme [DNA replication, recombination, and repair]	NA|89aa|up_3|NC_005823.1_2006039_2006306_+	NA	NA|437aa|up_2|NC_005823.1_2006425_2007736_-	TIGR04043, hypothetical_protein_WH5701_02349, radical SAM protein, MSMEG_0568 family	NA|445aa|up_1|NC_005823.1_2007976_2009311_+	pfam07995, GSDH, Glucose / Sorbosone dehydrogenase	NA|389aa|up_0|NC_005823.1_2009410_2010577_+	NF033165, lipo_LipL45, lipoprotein LipL45	NA|100aa|down_0|NC_005823.1_2011882_2012182_-	NA	NA|302aa|down_1|NC_005823.1_2012169_2013075_-	PRK05481, PRK05481, lipoyl synthase; Provisional	NA|247aa|down_2|NC_005823.1_2013174_2013915_+	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|473aa|down_3|NC_005823.1_2013911_2015330_+	COG1696, DltB, Predicted membrane protein involved in D-alanine export [Cell envelope biogenesis, outer membrane]	NA|92aa|down_4|NC_005823.1_2017542_2017818_-	NA	NA|215aa|down_5|NC_005823.1_2017972_2018617_-	PRK01362, PRK01362, fructose-6-phosphate aldolase	NA|244aa|down_6|NC_005823.1_2018796_2019528_-	NA	NA|209aa|down_7|NC_005823.1_2019558_2020185_-	NA	NA|512aa|down_8|NC_005823.1_2020187_2021723_-	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|209aa|down_9|NC_005823.1_2021726_2022353_-	PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed
GCF_000007685.1_ASM768v1	NC_005823	Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 chromosome I, complete sequence	8	2797856-2797947	8	CRISPRCasFinder	no		WYL,csa3,cas3,cas5,cas7,cas8b3,cas6,cas2,DinG,cas8c,cas4,cas1,Cas9_archaeal	Orphan	ATTACGTCTCTTTGTAACTCACACTTGTT	29	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,cas5,cas7,cas8b3,cas6,cas2,DinG,cas8c,cas4,cas1,Cas9_archaeal	NA|175aa|up_9|NC_005823.1_2786363_2786888_+,NA|176aa|up_1|NC_005823.1_2796249_2796777_+,NA|185aa|down_5|NC_005823.1_2808601_2809156_+	NA|175aa|up_9|NC_005823.1_2786363_2786888_+	NA	NA|222aa|up_8|NC_005823.1_2786884_2787550_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|299aa|up_7|NC_005823.1_2787546_2788443_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|117aa|up_6|NC_005823.1_2788439_2788790_+	cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides	NA|337aa|up_5|NC_005823.1_2788806_2789817_+	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|438aa|up_4|NC_005823.1_2791575_2792889_+	pfam07588, DUF1554, Protein of unknown function (DUF1554)	NA|137aa|up_3|NC_005823.1_2793188_2793599_+	cd17569, REC_HupR-like, phosphoacceptor receiver (REC) domain of hydrogen uptake protein regulator (HupR) and similar domains	NA|430aa|up_2|NC_005823.1_2794949_2796239_+	cd00828, elong_cond_enzymes, "elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases	NA|176aa|up_1|NC_005823.1_2796249_2796777_+	NA	NA|270aa|up_0|NC_005823.1_2796751_2797561_-	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms]	NA|253aa|down_0|NC_005823.1_2798005_2798764_-	PRK06172, PRK06172, SDR family oxidoreductase	NA|285aa|down_1|NC_005823.1_2799130_2799985_-	pfam13279, 4HBT_2, Thioesterase-like superfamily	NA|594aa|down_2|NC_005823.1_2800413_2802195_+	pfam01144, CoA_trans, Coenzyme A transferase	NA|323aa|down_3|NC_005823.1_2802228_2803197_+	cd00830, KAS_III, Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems	NA|1781aa|down_4|NC_005823.1_2803221_2808564_+	COG3899, COG3899, Predicted ATPase [General function prediction only]	NA|185aa|down_5|NC_005823.1_2808601_2809156_+	NA	NA|124aa|down_6|NC_005823.1_2809158_2809530_+	pfam09345, DUF1987, Domain of unknown function (DUF1987)	NA|487aa|down_7|NC_005823.1_2809558_2811019_+	cd07302, CHD, cyclase homology domain	NA|153aa|down_8|NC_005823.1_2811888_2812347_-	pfam13669, Glyoxalase_4, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|383aa|down_9|NC_005823.1_2812735_2813883_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed
GCF_000007685.1_ASM768v1	NC_005823	Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 chromosome I, complete sequence	9	3086747-3086849	9	CRISPRCasFinder	no		WYL,csa3,cas3,cas5,cas7,cas8b3,cas6,cas2,DinG,cas8c,cas4,cas1,Cas9_archaeal	Orphan	TTTTTTAATTTCATATCAAAATCTTGATCGTTTTAAGAG	39	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,cas5,cas7,cas8b3,cas6,cas2,DinG,cas8c,cas4,cas1,Cas9_archaeal	NA,NA|81aa|down_1|NC_005823.1_3088100_3088343_+,NA|69aa|down_3|NC_005823.1_3089214_3089421_-	NA|313aa|up_9|NC_005823.1_3075765_3076704_-	PRK13022, secF, protein translocase subunit SecF	NA|643aa|up_8|NC_005823.1_3076708_3078637_-	PRK05812, secD, preprotein translocase subunit SecD; Reviewed	NA|249aa|up_7|NC_005823.1_3078647_3079394_-	TIGR04420, Sec_Non_Glob, Sec region non-globular protein	NA|109aa|up_6|NC_005823.1_3079390_3079717_-	pfam02699, YajC, Preprotein translocase subunit	NA|337aa|up_5|NC_005823.1_3079772_3080783_-	PRK00188, trpD, anthranilate phosphoribosyltransferase; Provisional	NA|249aa|up_4|NC_005823.1_3080757_3081504_-	TIGR00560, pgsA, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA|438aa|up_3|NC_005823.1_3081500_3082814_-	TIGR01125, Ribosomal_protein_S12_methylthiotransferase_RimO, ribosomal protein S12 methylthiotransferase RimO	NA|372aa|up_2|NC_005823.1_3082822_3083938_-	pfam13413, HTH_25, Helix-turn-helix domain	NA|258aa|up_1|NC_005823.1_3083959_3084733_-	cd16325, LolA, LolA, a periplasmic chaperone	NA|390aa|up_0|NC_005823.1_3085191_3086361_-	pfam07614, DUF1577, Protein of unknown function (DUF1577)	NA|144aa|down_0|NC_005823.1_3087569_3088001_-	pfam13671, AAA_33, AAA domain	NA|81aa|down_1|NC_005823.1_3088100_3088343_+	NA	NA|222aa|down_2|NC_005823.1_3088521_3089187_+	PRK00312, pcm, protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA|69aa|down_3|NC_005823.1_3089214_3089421_-	NA	NA|567aa|down_4|NC_005823.1_3089356_3091057_+	cd00567, ACAD, Acyl-CoA dehydrogenase	NA|240aa|down_5|NC_005823.1_3091197_3091917_+	cd06561, AlkD_like, A new structural DNA glycosylase	NA|301aa|down_6|NC_005823.1_3091894_3092797_+	TIGR04470, hypothetical_protein_ALIPUT_00462, radical SAM mobile pair protein B	NA|340aa|down_7|NC_005823.1_3094123_3095143_-	cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains	NA|345aa|down_8|NC_005823.1_3095229_3096264_+	pfam03280, Lipase_chap, Proteobacterial lipase chaperone protein	NA|577aa|down_9|NC_005823.1_3096270_3098001_+	PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed
GCF_000007685.1_ASM768v1	NC_005823	Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 chromosome I, complete sequence	10	3391097-3391198	10	CRISPRCasFinder	no		WYL,csa3,cas3,cas5,cas7,cas8b3,cas6,cas2,DinG,cas8c,cas4,cas1,Cas9_archaeal	Orphan	CTGACAAATTCTAAGTTGTAAGAGTTCCCACA	32	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,cas5,cas7,cas8b3,cas6,cas2,DinG,cas8c,cas4,cas1,Cas9_archaeal	NA,NA|172aa|down_7|NC_005823.1_3401686_3402202_-	NA|357aa|up_9|NC_005823.1_3379483_3380554_-	PRK12299, obgE, GTPase CgtA; Reviewed	NA|85aa|up_8|NC_005823.1_3380668_3380923_-	PRK05435, rpmA, 50S ribosomal protein L27; Validated	NA|109aa|up_7|NC_005823.1_3380912_3381239_-	PRK14553, PRK14553, ribosomal-processing cysteine protease Prp	NA|105aa|up_6|NC_005823.1_3381235_3381550_-	PRK05573, rplU, 50S ribosomal protein L21; Validated	NA|287aa|up_5|NC_005823.1_3383985_3384846_-	COG3865, COG3865, Uncharacterized protein conserved in bacteria [Function unknown]	NA|305aa|up_4|NC_005823.1_3384910_3385825_-	pfam09674, DUF2400, Protein of unknown function (DUF2400)	NA|299aa|up_3|NC_005823.1_3385821_3386718_-	cd07938, DRE_TIM_HMGL, 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain	NA|579aa|up_2|NC_005823.1_3387737_3389474_-	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]	NA|95aa|up_1|NC_005823.1_3389488_3389773_-	TIGR04453, Lepto_8Cys, Cys-rich protein, LA_1312 family	NA|354aa|up_0|NC_005823.1_3389803_3390865_-	PRK14465, PRK14465, 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA|253aa|down_0|NC_005823.1_3391955_3392714_-	PRK13957, PRK13957, indole-3-glycerol-phosphate synthase; Provisional	NA|111aa|down_1|NC_005823.1_3392720_3393053_-	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|464aa|down_2|NC_005823.1_3393135_3394527_+	COG0771, MurD, UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]	NA|82aa|down_3|NC_005823.1_3396098_3396344_+	pfam07599, DUF1563, Protein of unknown function (DUF1563)	NA|632aa|down_4|NC_005823.1_3396529_3398425_+	pfam07598, DUF1561, Protein of unknown function (DUF1561)	NA|258aa|down_5|NC_005823.1_3399053_3399827_-	PRK13318, PRK13318, type III pantothenate kinase	NA|253aa|down_6|NC_005823.1_3399828_3400587_-	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]	NA|172aa|down_7|NC_005823.1_3401686_3402202_-	NA	NA|442aa|down_8|NC_005823.1_3402297_3403623_-	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine	NA|287aa|down_9|NC_005823.1_3403659_3404520_-	cd00586, 4HBT, 4-hydroxybenzoyl-CoA thioesterase (4HBT)
GCF_000007685.1_ASM768v1	NC_005823	Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 chromosome I, complete sequence	11	3991732-3991827	11	CRISPRCasFinder	no		WYL,csa3,cas3,cas5,cas7,cas8b3,cas6,cas2,DinG,cas8c,cas4,cas1,Cas9_archaeal	Orphan	AGGAAAGCGTTGTGTTGAGTTTTCC	25	1	2	3991757-3991802|3991757-3991802	NC_005823.1_1150900-1150855|NC_005823.1_3356357-3356402	NA	1	1	Orphan	WYL,csa3,cas3,cas5,cas7,cas8b3,cas6,cas2,DinG,cas8c,cas4,cas1,Cas9_archaeal	NA|192aa|up_8|NC_005823.1_3981093_3981669_-,NA|140aa|up_7|NC_005823.1_3981957_3982377_+,NA|372aa|up_6|NC_005823.1_3982408_3983524_+,NA|124aa|up_0|NC_005823.1_3991134_3991506_+,NA|163aa|down_0|NC_005823.1_3992713_3993202_-,NA|112aa|down_1|NC_005823.1_3993211_3993547_-,NA|48aa|down_8|NC_005823.1_3999310_3999454_+	NA|399aa|up_9|NC_005823.1_3979828_3981025_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|192aa|up_8|NC_005823.1_3981093_3981669_-	NA	NA|140aa|up_7|NC_005823.1_3981957_3982377_+	NA	NA|372aa|up_6|NC_005823.1_3982408_3983524_+	NA	NA|465aa|up_5|NC_005823.1_3983965_3985360_-	pfam07588, DUF1554, Protein of unknown function (DUF1554)	NA|163aa|up_4|NC_005823.1_3986466_3986955_-	pfam15428, Imm26, Immunity protein 26	NA|610aa|up_3|NC_005823.1_3987103_3988933_-	PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed	NA|433aa|up_2|NC_005823.1_3989141_3990440_+	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated	NA|219aa|up_1|NC_005823.1_3990436_3991093_+	cd16373, DMSOR_beta_like, uncharacterized subfamily of DMSO Reductase beta subunit family	NA|124aa|up_0|NC_005823.1_3991134_3991506_+	NA	NA|163aa|down_0|NC_005823.1_3992713_3993202_-	NA	NA|112aa|down_1|NC_005823.1_3993211_3993547_-	NA	NA|184aa|down_2|NC_005823.1_3994013_3994565_-	pfam03168, LEA_2, Late embryogenesis abundant protein	NA|341aa|down_3|NC_005823.1_3994569_3995592_-	cd08291, ETR_like_1, 2-enoyl thioester reductase (ETR) like proteins, child 1	NA|109aa|down_4|NC_005823.1_3995588_3995915_-	cd02980, TRX_Fd_family, Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE)	NA|165aa|down_5|NC_005823.1_3996308_3996803_+	pfam11827, DUF3347, Protein of unknown function (DUF3347)	NA|330aa|down_6|NC_005823.1_3996781_3997771_+	pfam11916, Vac14_Fig4_bd, Vacuolar protein 14 C-terminal Fig4p binding	NA|261aa|down_7|NC_005823.1_3997779_3998562_-	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only]	NA|48aa|down_8|NC_005823.1_3999310_3999454_+	NA	NA|491aa|down_9|NC_005823.1_3999614_4001087_-	PRK09123, PRK09123, amidophosphoribosyltransferase; Provisional
