The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_004461	Staphylococcus epidermidis ATCC 12228, complete sequence	2499279	469116	479651	2499279		Staphylococcus_phage(22.22%)	13	NA	NA
WP_001830355.1|469116_469956_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	43.0	1.2e-60
WP_001830351.1|470158_471265_+	glycosyltransferase family 2 protein	NA	A8CG95	Salmonella_phage	43.2	6.3e-62
WP_025987135.1|471334_472387_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	30.6	2.0e-17
WP_001830352.1|472389_473079_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.2	3.4e-34
WP_001830332.1|473053_473527_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001830329.1|473577_474015_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_002485887.1|474610_474766_-	hypothetical protein	NA	A0A146ICT8	Staphylococcus_phage	77.6	4.4e-14
WP_001830331.1|475115_475715_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001830330.1|475816_476530_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	44.8	1.6e-55
WP_001830341.1|476530_476950_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_001830328.1|476954_477626_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	55.7	4.1e-64
WP_001830349.1|477922_478510_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_001830323.1|478499_479651_+	anthranilate synthase component I family protein	NA	A0A0B5J984	Pandoravirus	39.6	7.5e-26
>prophage 2
NC_004461	Staphylococcus epidermidis ATCC 12228, complete sequence	2499279	501077	511511	2499279		uncultured_Caudovirales_phage(66.67%)	10	NA	NA
WP_002438897.1|501077_502583_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	34.0	5.5e-61
WP_001832596.1|502866_503367_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	70.1	1.1e-50
WP_001829684.1|503380_504256_-	DMT family transporter	NA	NA	NA	NA	NA
WP_001829589.1|505010_505409_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	100.0	2.0e-71
WP_001829582.1|505371_507477_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	100.0	0.0e+00
WP_001829597.1|507595_508564_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	100.0	3.9e-185
WP_002456931.1|508538_508802_+	hypothetical protein	NA	A0A2H4IYB4	uncultured_Caudovirales_phage	100.0	5.5e-17
WP_002438902.1|508817_509792_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	99.7	5.9e-165
WP_002438903.1|509775_510735_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	100.0	4.1e-17
WP_001829596.1|510731_511511_+	ATP-binding cassette domain-containing protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	33.6	5.1e-18
>prophage 3
NC_004461	Staphylococcus epidermidis ATCC 12228, complete sequence	2499279	751688	760158	2499279		Synechococcus_phage(33.33%)	9	NA	NA
WP_001831735.1|751688_752171_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	43.3	5.2e-21
WP_001831674.1|752157_753285_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_001831723.1|753285_753990_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	H8ZMN3	Synechococcus_phage	42.5	1.6e-47
WP_001831728.1|753989_754250_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_001831727.1|754251_754923_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_002467589.1|754915_757105_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	40.4	1.1e-139
WP_002485328.1|757083_758568_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.9	7.2e-45
WP_001831685.1|758560_759592_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.4	2.1e-64
WP_001831672.1|759591_760158_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.0	6.1e-29
>prophage 4
NC_004461	Staphylococcus epidermidis ATCC 12228, complete sequence	2499279	1469653	1557857	2499279	protease,tRNA,integrase,transposase	Staphylococcus_phage(78.38%)	74	1535664:1535681	1567457:1567474
WP_011082715.1|1469653_1480732_-	YSIRK signal domain/LPXTG anchor domain surface protein	NA	A0A2H4PQU6	Staphylococcus_phage	29.3	7.0e-28
WP_001830891.1|1481136_1481448_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	71.8	4.1e-35
WP_001830785.1|1481473_1483891_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	87.4	0.0e+00
WP_001830884.1|1484179_1485394_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	83.7	4.6e-183
WP_001830802.1|1485500_1486454_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	84.7	3.3e-67
WP_001830894.1|1486450_1487014_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	66.5	1.9e-67
WP_001830809.1|1487250_1487652_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001830886.1|1488141_1488969_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001832688.1|1489211_1490213_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	69.4	1.3e-130
WP_002456446.1|1490469_1490931_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	84.2	1.2e-59
WP_002456445.1|1490943_1492125_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	76.1	2.5e-178
WP_002467848.1|1492137_1492770_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	77.6	1.1e-87
WP_002495598.1|1492776_1493820_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	66.8	8.9e-135
WP_002484471.1|1494256_1495741_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	65.6	2.5e-13
WP_001830727.1|1496088_1496940_-	glucosaminidase domain-containing protein	NA	A0A1J0MFB0	Staphylococcus_phage	35.6	1.0e-32
WP_002456441.1|1497317_1497533_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001830724.1|1497740_1498220_+	sigma-70 family RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	42.3	2.7e-25
WP_001830734.1|1498225_1498669_+	competence protein ComK	NA	NA	NA	NA	NA
WP_002485267.1|1498655_1499099_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	43.5	5.3e-20
WP_001830731.1|1499238_1499952_-	transaldolase	NA	M1PR54	Cyanophage	37.4	4.1e-22
WP_002446728.1|1500228_1500537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001830726.1|1500575_1500941_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	57.0	4.1e-34
WP_001830729.1|1500937_1501291_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	32.5	8.5e-05
WP_115172141.1|1501769_1502948_+|transposase	IS110 family transposase	transposase	A0A1X9I619	Streptococcus_phage	37.2	9.7e-61
WP_001829826.1|1503177_1503333_-	hypothetical protein	NA	A0A146ICT8	Staphylococcus_phage	77.6	1.2e-14
WP_104832450.1|1503713_1504892_-|transposase	IS110 family transposase	transposase	A0A1X9I619	Streptococcus_phage	37.2	5.7e-61
WP_001829832.1|1505176_1506013_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	73.3	1.0e-120
WP_002474706.1|1506193_1507102_-	hypothetical protein	NA	A0A2H4PQQ8	Staphylococcus_phage	80.6	1.8e-102
WP_001829830.1|1507204_1508404_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	85.4	4.1e-192
WP_002485319.1|1508773_1510366_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	83.2	2.7e-268
WP_002489377.1|1510596_1511382_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	71.3	2.7e-99
WP_001829813.1|1511368_1511836_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	58.1	2.5e-44
WP_002457867.1|1511906_1512155_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	83.1	6.5e-36
WP_002485317.1|1512151_1513153_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	50.5	9.0e-92
WP_011082721.1|1513142_1514567_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	63.5	1.3e-171
WP_002485100.1|1515819_1516485_+	Ltp family lipoprotein	NA	A0A2H4J5B8	uncultured_Caudovirales_phage	37.6	2.7e-07
WP_161382324.1|1517054_1517189_+|integrase	integrase	integrase	NA	NA	NA	NA
WP_002456424.1|1517461_1518196_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002485104.1|1518461_1518788_-	amidase	NA	A0A2H4JCA1	uncultured_Caudovirales_phage	74.1	7.1e-38
WP_011082722.1|1518947_1519442_+|integrase	site-specific integrase	integrase	B7T092	Staphylococcus_virus	76.1	9.9e-68
WP_002505509.1|1519754_1520249_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002484614.1|1521976_1522891_+	DUF4238 domain-containing protein	NA	NA	NA	NA	NA
WP_002505510.1|1523085_1523913_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002484931.1|1524103_1526440_-	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_002484406.1|1526505_1526718_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002484408.1|1526793_1527555_-	class A sortase	NA	NA	NA	NA	NA
WP_002484416.1|1527565_1528036_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_002484399.1|1528013_1530170_-	type IA DNA topoisomerase	NA	A0A1X9I6W8	Streptococcus_phage	38.1	2.3e-76
WP_002484400.1|1530211_1531516_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002484396.1|1531520_1531871_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002484405.1|1531867_1532170_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002484407.1|1532393_1533251_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002484410.1|1533247_1533850_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002484401.1|1533870_1534941_-	CHAP domain-containing protein	NA	A0A249Y1A9	Staphylococcus_phage	58.0	2.0e-33
WP_002484404.1|1534944_1536894_-	ATP-binding protein	NA	NA	NA	NA	NA
1535664:1535681	attL	ATGTAGTTTTAAAAAATG	NA	NA	NA	NA
WP_002484409.1|1536919_1537507_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002484394.1|1537521_1537848_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002484393.1|1537894_1538296_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002484397.1|1538295_1540593_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002505512.1|1540589_1543169_-	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA	NA
WP_002484402.1|1543168_1543861_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002484415.1|1543861_1546108_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002484412.1|1546177_1546480_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011082730.1|1546596_1546866_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002505516.1|1546866_1549905_-	isopeptide-forming domain-containing fimbrial protein	NA	NA	NA	NA	NA
WP_002484686.1|1549921_1551136_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_002484695.1|1551312_1552170_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002484690.1|1552209_1552491_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002484694.1|1552474_1552900_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002484696.1|1552871_1553321_-	replication initiator protein A	NA	A0A097PBE7	Streptococcus_pyogenes_phage	40.4	5.4e-12
WP_002484691.1|1553317_1553755_-	DUF771 domain-containing protein	NA	NA	NA	NA	NA
WP_002484687.1|1555041_1555578_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002484689.1|1555610_1555811_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002484688.1|1556786_1557857_+|integrase	site-specific integrase	integrase	A0A1J0MFS3	Staphylococcus_phage	42.1	1.6e-70
1567457:1567474	attR	ATGTAGTTTTAAAAAATG	NA	NA	NA	NA
