assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000007565.2_ASM756v2	NC_002947	Pseudomonas putida KT2440, complete sequence	1	1913255-1913375	1	CRISPRCasFinder	no		WYL,DEDDh,RT,csa3,cas3,DinG,PD-DExK	Orphan	GGGTGAAGTGGCCATGGCCTTTGTGGCCATAACTGAGATCGATGGG	46	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,RT,csa3,cas3,DinG,PD-DExK	NA,NA|123aa|down_4|NC_002947.4_1916747_1917116_+	NA|106aa|up_9|NC_002947.4_1896755_1897073_-	PRK11431, PRK11431, quaternary ammonium compound efflux SMR transporter SugE	NA|307aa|up_8|NC_002947.4_1897290_1898211_-	PRK00321, rdgC, recombination associated protein; Reviewed	NA|1342aa|up_7|NC_002947.4_1899449_1903475_+	cd02754, MopB_Nitrate-R-NapA-like, Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite	NA|851aa|up_6|NC_002947.4_1903745_1906298_+	PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional	NA|121aa|up_5|NC_002947.4_1906297_1906660_+	cd03529, Rieske_NirD, Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium	NA|317aa|up_4|NC_002947.4_1906787_1907738_-	cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase	NA|253aa|up_3|NC_002947.4_1907762_1908521_-	cd05233, SDR_c, classical (c) SDRs	NA|237aa|up_2|NC_002947.4_1908539_1909250_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|447aa|up_1|NC_002947.4_1909470_1910811_-	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter	NA|310aa|up_0|NC_002947.4_1911106_1912036_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|311aa|down_0|NC_002947.4_1913633_1914566_+	TIGR02424, TF_pcaQ, pca operon transcription factor PcaQ	NA|251aa|down_1|NC_002947.4_1914819_1915572_+	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]	NA|146aa|down_2|NC_002947.4_1915860_1916298_+	COG3339, COG3339, Uncharacterized conserved protein [Function unknown]	NA|113aa|down_3|NC_002947.4_1916412_1916751_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|123aa|down_4|NC_002947.4_1916747_1917116_+	NA	NA|361aa|down_5|NC_002947.4_1917141_1918224_-	cd01948, EAL, EAL domain	NA|694aa|down_6|NC_002947.4_1918341_1920423_-	PRK11186, PRK11186, carboxy terminal-processing peptidase	NA|321aa|down_7|NC_002947.4_1920562_1921525_+	cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase	NA|218aa|down_8|NC_002947.4_1921585_1922239_-	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C	NA|330aa|down_9|NC_002947.4_1922253_1923243_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
GCF_000007565.2_ASM756v2	NC_002947	Pseudomonas putida KT2440, complete sequence	2	2939399-2939472	2	CRISPRCasFinder	no		WYL,DEDDh,RT,csa3,cas3,DinG,PD-DExK	Orphan	TGTAGGAACGGGTTCACCCGCGAA	24	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,RT,csa3,cas3,DinG,PD-DExK	NA,NA|190aa|down_0|NC_002947.4_2939493_2940063_-	NA|3609aa|up_9|NC_002947.4_2910980_2921807_+	cd09821, An_peroxidase_bacterial_2, Uncharacterized bacterial family of heme peroxidases	NA|162aa|up_8|NC_002947.4_2921968_2922454_+	cd00431, cysteine_hydrolases, Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle	NA|924aa|up_7|NC_002947.4_2922480_2925252_-	cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)	NA|233aa|up_6|NC_002947.4_2925816_2926515_-	cd02910, cupin_Yhhw_N, Escherichia coli YhhW and YhaK and related proteins, pirin-like bicupin, N-terminal cupin domain	NA|835aa|up_5|NC_002947.4_2926700_2929205_+	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|1600aa|up_4|NC_002947.4_2929211_2934011_-	pfam14496, NEL, C-terminal novel E3 ligase, LRR-interacting	NA|309aa|up_3|NC_002947.4_2934283_2935210_+	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|140aa|up_2|NC_002947.4_2935285_2935705_+	cd07253, GLOD5, Human glyoxalase domain-containing protein 5 and similar proteins	NA|559aa|up_1|NC_002947.4_2935966_2937643_+	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|443aa|up_0|NC_002947.4_2937725_2939054_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|190aa|down_0|NC_002947.4_2939493_2940063_-	NA	NA|129aa|down_1|NC_002947.4_2940104_2940491_-	cd07263, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|304aa|down_2|NC_002947.4_2940768_2941680_+	cd08412, PBP2_PAO1_like, The C-terminal substrate-binding domain of putative LysR-type transcriptional regulator PAO1-like, a member of the type 2 periplasmic binding fold protein superfamily	NA|158aa|down_3|NC_002947.4_2941725_2942199_-	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|199aa|down_4|NC_002947.4_2942349_2942946_+	pfam04403, PqiA, Paraquat-inducible protein A	NA|210aa|down_5|NC_002947.4_2942942_2943572_+	COG2995, PqiA, Uncharacterized paraquat-inducible protein A [Function unknown]	NA|547aa|down_6|NC_002947.4_2943571_2945212_+	COG3008, PqiB, Paraquat-inducible protein B [General function prediction only]	NA|177aa|down_7|NC_002947.4_2945223_2945754_+	pfam03886, ABC_trans_aux, ABC-type transport auxiliary lipoprotein component	NA|585aa|down_8|NC_002947.4_2945766_2947521_-	NF012179, CptA, phosphoethanolamine transferase CptA	NA|52aa|down_9|NC_002947.4_2947732_2947888_+	pfam11661, DUF2986, Protein of unknown function (DUF2986)
