assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000007525.1_ASM752v1	NC_004307	Bifidobacterium longum NCC2705, complete sequence	1	745545-745628	1	CRISPRCasFinder	no		DEDDh,WYL,c2c9_V-U4,cas3,casR	Orphan	TCGTGAAGAACGTACGGTGAGTG	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,c2c9_V-U4,cas3,casR	NA,NA|127aa|down_4|NC_004307.2_750564_750945_-	NA|264aa|up_9|NC_004307.2_732816_733608_-	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|439aa|up_8|NC_004307.2_733956_735273_-	COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]	NA|291aa|up_7|NC_004307.2_735825_736698_+	PRK07105, PRK07105, pyridoxamine kinase; Validated	NA|168aa|up_6|NC_004307.2_736934_737438_+	PRK14681, PRK14681, hypothetical protein; Provisional	NA|512aa|up_5|NC_004307.2_737495_739031_+	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]	NA|567aa|up_4|NC_004307.2_739027_740728_+	pfam02481, DNA_processg_A, DNA recombination-mediator protein A	NA|622aa|up_3|NC_004307.2_740784_742650_+	PRK08205, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|322aa|up_2|NC_004307.2_742745_743711_+	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|222aa|up_1|NC_004307.2_743804_744470_+	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|314aa|up_0|NC_004307.2_744515_745457_-	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|473aa|down_0|NC_004307.2_745689_747108_-	pfam06965, Na_H_antiport_1, Na+/H+ antiporter 1	NA|473aa|down_1|NC_004307.2_747589_749008_-	PRK05342, clpX, ATP-dependent Clp protease ATP-binding subunit ClpX	NA|234aa|down_2|NC_004307.2_749129_749831_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|208aa|down_3|NC_004307.2_749836_750460_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|127aa|down_4|NC_004307.2_750564_750945_-	NA	NA|489aa|down_5|NC_004307.2_751060_752527_-	cd01033, ClC_like, Putative ClC chloride channel	NA|460aa|down_6|NC_004307.2_752710_754090_-	PRK01490, tig, trigger factor; Provisional	NA|434aa|down_7|NC_004307.2_754144_755446_-	cd06129, RNaseD_like, DEDDy 3'-5' exonuclease domain of RNase D, WRN, and similar proteins	NA|213aa|down_8|NC_004307.2_755442_756081_-	pfam11452, DUF3000, Protein of unknown function (DUF3000)	NA|294aa|down_9|NC_004307.2_756143_757025_-	TIGR02493, PFLA, pyruvate formate-lyase 1-activating enzyme
GCF_000007525.1_ASM752v1	NC_004307	Bifidobacterium longum NCC2705, complete sequence	2	1337044-1337128	2	CRISPRCasFinder	no		DEDDh,WYL,c2c9_V-U4,cas3,casR	Orphan	AAGGCTCCCGCTGGCGGGAGCTGTC	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,c2c9_V-U4,cas3,casR	NA|680aa|up_6|NC_004307.2_1326546_1328586_-,NA	NA|229aa|up_9|NC_004307.2_1321167_1321854_+	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|509aa|up_8|NC_004307.2_1321915_1323442_+	cd08494, PBP2_NikA_DppA_OppA_like_6, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|912aa|up_7|NC_004307.2_1323585_1326321_+	NF000540, alt_ValS, valine--tRNA ligase	NA|680aa|up_6|NC_004307.2_1326546_1328586_-	NA	NA|130aa|up_5|NC_004307.2_1328707_1329097_-	PRK09239, PRK09239, chorismate mutase; Provisional	NA|690aa|up_4|NC_004307.2_1329404_1331474_-	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|538aa|up_3|NC_004307.2_1331679_1333293_-	PRK07208, PRK07208, hypothetical protein; Provisional	NA|618aa|up_2|NC_004307.2_1333511_1335365_-	cd07061, HP_HAP_like, Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His residue which is phosphorylated during the reaction	NA|105aa|up_1|NC_004307.2_1335538_1335853_-	pfam10611, DUF2469, Protein of unknown function (DUF2469)	NA|355aa|up_0|NC_004307.2_1335863_1336928_-	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|500aa|down_0|NC_004307.2_1337223_1338723_-	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA|514aa|down_1|NC_004307.2_1338748_1340290_-	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA|100aa|down_2|NC_004307.2_1340293_1340593_-	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA|283aa|down_3|NC_004307.2_1340759_1341608_-	cd18096, SpoU-like, SAM-dependent rRNA or tRNA methylase related to SpoU	NA|210aa|down_4|NC_004307.2_1341701_1342331_-	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated	NA|475aa|down_5|NC_004307.2_1342327_1343752_-	pfam02646, RmuC, RmuC family	NA|94aa|down_6|NC_004307.2_1343794_1344076_-	COG1937, COG1937, Uncharacterized protein conserved in bacteria [Function unknown]	NA|903aa|down_7|NC_004307.2_1344187_1346896_+	cd02079, P-type_ATPase_HM, P-type heavy metal-transporting ATPase	NA|245aa|down_8|NC_004307.2_1346979_1347714_-	COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]	NA|560aa|down_9|NC_004307.2_1347947_1349627_-	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
GCF_000007525.1_ASM752v1	NC_004307	Bifidobacterium longum NCC2705, complete sequence	3	1462998-1463366	3	CRISPRCasFinder	no		DEDDh,WYL,c2c9_V-U4,cas3,casR	Orphan	TGCGGTTGATTCCACGGGTCACCG	24	0	0	NA	NA	NA	6	6	Orphan	DEDDh,WYL,c2c9_V-U4,cas3,casR	NA|207aa|up_7|NC_004307.2_1455106_1455727_-,NA|99aa|up_2|NC_004307.2_1460329_1460626_-,NA|201aa|down_5|NC_004307.2_1469213_1469816_-	NA|639aa|up_9|NC_004307.2_1450918_1452835_-	PRK03739, PRK03739, 2-isopropylmalate synthase; Validated	NA|527aa|up_8|NC_004307.2_1453523_1455104_+	cd07383, MPP_Dcr2, Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain	NA|207aa|up_7|NC_004307.2_1455106_1455727_-	NA	NA|365aa|up_6|NC_004307.2_1455894_1456989_+	PRK08664, PRK08664, aspartate-semialdehyde dehydrogenase; Reviewed	NA|189aa|up_5|NC_004307.2_1457070_1457637_-	PRK06635, PRK06635, aspartate kinase; Reviewed	NA|255aa|up_4|NC_004307.2_1457692_1458457_-	PRK06635, PRK06635, aspartate kinase; Reviewed	NA|428aa|up_3|NC_004307.2_1458817_1460101_-	pfam13635, DUF4143, Domain of unknown function (DUF4143)	NA|99aa|up_2|NC_004307.2_1460329_1460626_-	NA	NA|378aa|up_1|NC_004307.2_1460989_1462123_+	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|201aa|up_0|NC_004307.2_1462119_1462722_-	PRK00076, recR, recombination protein RecR; Reviewed	NA|200aa|down_0|NC_004307.2_1465855_1466455_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|377aa|down_1|NC_004307.2_1466652_1467783_-	PRK11914, PRK11914, diacylglycerol kinase; Reviewed	NA|126aa|down_2|NC_004307.2_1467831_1468209_-	TIGR03816, tadE_like_DECH, helicase/secretion neighborhood TadE-like protein	NA|126aa|down_3|NC_004307.2_1468258_1468636_-	pfam07811, TadE, TadE-like protein	NA|96aa|down_4|NC_004307.2_1468641_1468929_-	pfam14029, DUF4244, Protein of unknown function (DUF4244)	NA|201aa|down_5|NC_004307.2_1469213_1469816_-	NA	NA|219aa|down_6|NC_004307.2_1469812_1470469_-	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion]	NA|356aa|down_7|NC_004307.2_1470468_1471536_-	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase	NA|317aa|down_8|NC_004307.2_1471542_1472493_-	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein	NA|242aa|down_9|NC_004307.2_1472715_1473441_-	PRK10847, PRK10847, DedA family protein
