The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_004556	Xylella fastidiosa Temecula1, complete sequence	2519802	420334	469025	2519802	integrase,tail,protease,capsid,plate,portal	Xylella_phage(23.81%)	54	450919:450933	476288:476302
WP_004089328.1|420334_421669_-|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_027700422.1|421695_422886_-	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_004089324.1|422882_423737_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_011097592.1|423733_424501_-	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	34.8	9.5e-17
WP_004089320.1|424503_425061_-	ribosome recycling factor	NA	NA	NA	NA	NA
WP_004089318.1|425814_427158_-	outer membrane protein transport protein	NA	NA	NA	NA	NA
WP_004089316.1|427389_428070_+|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
WP_004089314.1|428188_428509_+	DUF1820 family protein	NA	NA	NA	NA	NA
WP_004089310.1|429721_430453_-	UMP kinase	NA	NA	NA	NA	NA
WP_155115092.1|430763_430907_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012382451.1|430903_431152_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004089306.1|431854_432514_-	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA	NA
WP_004089304.1|432626_434519_-	phosphogluconate dehydratase	NA	NA	NA	NA	NA
WP_011097597.1|434659_435379_-	6-phosphogluconolactonase	NA	NA	NA	NA	NA
WP_004089300.1|435375_436389_-	glucokinase	NA	NA	NA	NA	NA
WP_004089298.1|436385_437819_-	glucose-6-phosphate dehydrogenase	NA	A0A222YYZ2	Synechococcus_phage	34.4	2.6e-68
WP_011097599.1|438147_439242_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	32.4	5.5e-26
WP_004089294.1|439386_440190_-	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_011097601.1|440504_440723_+	DUF1674 domain-containing protein	NA	NA	NA	NA	NA
WP_004089288.1|440780_441176_+	succinate dehydrogenase, cytochrome b556 subunit	NA	NA	NA	NA	NA
WP_004089286.1|441172_441556_+	succinate dehydrogenase, hydrophobic membrane anchor protein	NA	NA	NA	NA	NA
WP_004089284.1|441563_443354_+	succinate dehydrogenase flavoprotein subunit	NA	NA	NA	NA	NA
WP_004089282.1|443374_444160_+	succinate dehydrogenase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_004089280.1|444280_444529_+	succinate dehydrogenase assembly factor 2	NA	NA	NA	NA	NA
WP_011097604.1|444551_444932_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004089276.1|444957_446199_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_004089270.1|446191_446914_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	37.2	7.3e-35
WP_038231910.1|447261_449739_+	DNA internalization-related competence protein ComEC/Rec2	NA	M1PSD2	Streptococcus_phage	34.3	1.4e-05
WP_004085189.1|449723_450386_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_004089267.1|450390_450828_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_004089264.1|450845_452594_+	lipid A export permease/ATP-binding protein MsbA	NA	W8CYL7	Bacillus_phage	29.4	3.9e-50
450919:450933	attL	TTGTTGCTGCATGTG	NA	NA	NA	NA
WP_004089261.1|452590_453610_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_011097609.1|454635_455607_-	hypothetical protein	NA	V9IQX0	Stenotrophomonas_phage	47.5	3.1e-65
WP_011097610.1|455614_456172_-|tail	phage tail protein I	tail	V9IQK7	Stenotrophomonas_phage	54.4	1.1e-51
WP_011097611.1|456164_457058_-|plate	baseplate J/gp47 family protein	plate	V9IQV9	Stenotrophomonas_phage	46.4	1.9e-69
WP_004090694.1|457057_457396_-	GPW/gp25 family protein	NA	A0A088FV58	Escherichia_phage	61.3	5.4e-33
WP_004090695.1|457593_457875_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A0M3LQB1	Mannheimia_phage	46.2	2.5e-15
WP_004085172.1|457885_458161_+	HigA family addiction module antidote protein	NA	NA	NA	NA	NA
WP_004090696.1|458248_458551_+	type II toxin-antitoxin system MqsR family toxin	NA	NA	NA	NA	NA
WP_004090697.1|458553_458955_+	type II toxin-antitoxin system MqsA family antitoxin	NA	NA	NA	NA	NA
WP_011097612.1|459023_459611_-|plate	phage baseplate assembly protein V	plate	NA	NA	NA	NA
WP_011097613.1|459607_460150_-	hypothetical protein	NA	A0A1W6JT55	Escherichia_phage	41.6	2.9e-36
WP_011097614.1|460125_460647_-	hypothetical protein	NA	D5LGZ7	Escherichia_phage	34.3	3.7e-12
WP_011097935.1|460643_460967_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011097616.1|460966_461227_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011097617.1|461244_463119_-|capsid	phage major capsid protein	capsid	V5YSS9	Pseudomonas_phage	47.5	1.9e-159
WP_011097618.1|463115_463748_-|portal	phage portal protein	portal	A0A088FVG5	Escherichia_phage	51.1	1.6e-46
WP_080502611.1|463702_464263_+	hypothetical protein	NA	C8CLG0	Xylella_phage	91.7	1.5e-91
WP_011097620.1|464259_464538_+	VRR-NUC domain-containing protein	NA	C8CLF9	Xylella_phage	98.9	1.0e-45
WP_011097621.1|464539_464848_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011097622.1|464932_466351_+	DEAD/DEAH box helicase	NA	C8CLF7	Xylella_phage	99.8	4.4e-278
WP_011097623.1|466347_466602_+	DUF4224 domain-containing protein	NA	C8CLF5	Xylella_phage	81.2	2.2e-31
WP_011097624.1|466591_467611_+|integrase	tyrosine-type recombinase/integrase	integrase	C8CLF4	Xylella_phage	90.6	6.2e-173
WP_011097625.1|468383_469025_+	ParA family protein	NA	A0A142F1W4	Mycobacterium_phage	39.7	9.1e-13
476288:476302	attR	TTGTTGCTGCATGTG	NA	NA	NA	NA
>prophage 2
NC_004556	Xylella fastidiosa Temecula1, complete sequence	2519802	1120089	1180387	2519802	coat,tail,transposase,protease,tRNA,head,plate	Stenotrophomonas_phage(18.92%)	72	NA	NA
WP_041581123.1|1120089_1121265_+	replication initiation factor domain-containing protein	NA	S0F3F7	Stenotrophomonas_phage	45.8	8.7e-78
WP_011097842.1|1121309_1121621_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038232929.1|1121632_1121836_+	hypothetical protein	NA	S0F2M5	Stenotrophomonas_phage	61.7	2.1e-16
WP_011097854.1|1121832_1122078_+|coat	phage coat protein	coat	NA	NA	NA	NA
WP_038232932.1|1122136_1123663_+	hypothetical protein	NA	A0A1W6DXV5	Xanthomonas_phage	48.7	2.5e-45
WP_011097845.1|1123668_1124040_+	DUF2523 domain-containing protein	NA	A0A1D6ZIU0	Xanthomonas_phage	45.0	6.8e-21
WP_041581125.1|1124044_1125199_+	filamentous phage Cf1c related protein	NA	S0F3F8	Stenotrophomonas_phage	57.0	6.2e-113
WP_011097847.1|1125427_1125739_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011097848.1|1125798_1126146_-	hypothetical protein	NA	Q38057	Xanthomonas_phage	46.9	2.6e-06
WP_011097849.1|1126142_1126598_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041581127.1|1126741_1127116_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011097851.1|1127084_1127384_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011097852.1|1127385_1127652_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161594839.1|1127688_1127826_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041581123.1|1128431_1129607_+	replication initiation factor domain-containing protein	NA	S0F3F7	Stenotrophomonas_phage	45.8	8.7e-78
WP_011097842.1|1129651_1129963_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038232929.1|1129974_1130178_+	hypothetical protein	NA	S0F2M5	Stenotrophomonas_phage	61.7	2.1e-16
WP_011097854.1|1130174_1130420_+|coat	phage coat protein	coat	NA	NA	NA	NA
WP_038232932.1|1130478_1132005_+	hypothetical protein	NA	A0A1W6DXV5	Xanthomonas_phage	48.7	2.5e-45
WP_011097845.1|1132010_1132382_+	DUF2523 domain-containing protein	NA	A0A1D6ZIU0	Xanthomonas_phage	45.0	6.8e-21
WP_041581125.1|1132386_1133541_+	filamentous phage Cf1c related protein	NA	S0F3F8	Stenotrophomonas_phage	57.0	6.2e-113
WP_011097847.1|1133769_1134081_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011097848.1|1134140_1134488_-	hypothetical protein	NA	Q38057	Xanthomonas_phage	46.9	2.6e-06
WP_004091326.1|1135023_1135272_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011097857.1|1136735_1137065_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011097858.1|1137077_1138382_-	hypothetical protein	NA	Q94MX3	Xanthomonas_phage	47.7	2.7e-19
WP_011097859.1|1138512_1138641_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011097860.1|1139037_1139349_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011097861.1|1139389_1140565_-	replication initiation factor domain-containing protein	NA	S0F3F7	Stenotrophomonas_phage	45.5	5.6e-77
WP_004089744.1|1141343_1141526_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004089743.1|1141512_1141776_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155274696.1|1141966_1142125_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004089734.1|1142679_1143372_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2I2L6M4	Escherichia_phage	38.0	1.1e-24
WP_004089732.1|1143887_1145657_+|tRNA	aspartate--tRNA ligase	tRNA	NA	NA	NA	NA
WP_011097863.1|1145974_1147492_-	fumarate hydratase	NA	NA	NA	NA	NA
WP_004089729.1|1147732_1149334_-|protease	protease	protease	NA	NA	NA	NA
WP_011097864.1|1149448_1151056_-|protease	carboxyl-terminal processing protease	protease	A0A0R6PIZ1	Moraxella_phage	29.7	4.6e-05
WP_011097865.1|1152322_1155400_-	S8 family serine peptidase	NA	NA	NA	NA	NA
WP_012382580.1|1155828_1156053_+|transposase	transposase	transposase	A0A077SL42	Escherichia_phage	61.9	3.0e-16
WP_004089718.1|1156094_1156451_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004089715.1|1156755_1157010_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004089713.1|1157183_1157516_-	DNA-binding transcriptional regulator	NA	A0A0P0IRJ4	Acinetobacter_phage	40.7	8.3e-18
WP_004089711.1|1158241_1159147_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011097867.1|1159633_1160638_-	peptidase	NA	NA	NA	NA	NA
WP_011097868.1|1161142_1162306_-|tail	tail fiber protein	tail	A4PE46	Ralstonia_virus	32.7	1.4e-08
WP_011097869.1|1162309_1162870_-	DUF2612 domain-containing protein	NA	A0A0M5M1K4	Salmonella_phage	26.8	8.5e-07
WP_011097870.1|1162866_1164012_-|plate	baseplate J/gp47 family protein	plate	D0UIH5	Aggregatibacter_phage	49.2	4.8e-97
WP_004089386.1|1164161_1164470_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_011097871.1|1164478_1164718_-	antitoxin	NA	NA	NA	NA	NA
WP_011097872.1|1164855_1165209_-	hypothetical protein	NA	Q7Y5S5	Haemophilus_phage	49.6	8.2e-24
WP_004090764.1|1165205_1165847_-	hypothetical protein	NA	A0A0M5M1K7	Salmonella_phage	37.3	1.1e-31
WP_004090766.1|1165843_1166674_-	hypothetical protein	NA	D0UIH8	Aggregatibacter_phage	51.1	2.0e-76
WP_011097873.1|1166670_1166988_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004090769.1|1166987_1167758_-	hypothetical protein	NA	Q7Y5T0	Haemophilus_phage	34.8	2.9e-29
WP_004091353.1|1167815_1168142_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_004091355.1|1168138_1168420_+	XRE family transcriptional regulator	NA	A0A2D1GR59	Pseudomonas_phage	51.4	8.8e-13
WP_011097874.1|1168478_1170368_-	hypothetical protein	NA	D0UII2	Aggregatibacter_phage	28.0	2.6e-23
WP_011097875.1|1170515_1170938_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011097876.1|1170934_1171372_-	DUF3277 family protein	NA	Q7Y5T4	Haemophilus_phage	61.7	4.0e-44
WP_011097877.1|1171381_1172878_-	DUF3383 domain-containing protein	NA	Q7Y5T5	Haemophilus_phage	48.0	5.4e-125
WP_172632642.1|1172878_1173412_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011097879.1|1173335_1173716_-	hypothetical protein	NA	Q776V7	Haemophilus_phage	40.9	7.2e-18
WP_011097880.1|1173696_1174170_-	hypothetical protein	NA	M4SN98	Psychrobacter_phage	28.7	2.9e-08
WP_011097881.1|1174166_1174538_-	DUF4054 domain-containing protein	NA	Q7Y5T9	Haemophilus_phage	38.9	4.0e-13
WP_011097882.1|1174537_1174891_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004090291.1|1174954_1175938_-	DUF2184 domain-containing protein	NA	A0A2R3UA82	Siphoviridae_environmental_samples	39.1	1.1e-49
WP_004090290.1|1175947_1176430_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004090289.1|1176439_1177648_-	DUF2213 domain-containing protein	NA	H9C194	Pectobacterium_phage	41.7	2.5e-40
WP_004090288.1|1177647_1178493_-|head	phage head morphogenesis protein	head	Q7Y5U5	Haemophilus_phage	34.2	1.7e-30
WP_011097884.1|1178561_1178900_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_004090283.1|1178896_1179178_+	XRE family transcriptional regulator	NA	A0A2D1GR59	Pseudomonas_phage	45.2	6.8e-13
WP_011097885.1|1179226_1180387_-	DUF1073 domain-containing protein	NA	L7TRA1	Rhizobium_phage	39.2	1.7e-54
>prophage 3
NC_004556	Xylella fastidiosa Temecula1, complete sequence	2519802	1194755	1217907	2519802	holin,terminase,integrase	Xylella_phage(31.82%)	39	1201189:1201206	1219302:1219319
WP_011097890.1|1194755_1195988_-|integrase	tyrosine-type recombinase/integrase	integrase	T1S9J3	Salmonella_phage	38.9	1.9e-67
WP_012382594.1|1196129_1196405_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004090279.1|1196401_1197952_-|terminase	phage terminase large subunit	terminase	H9C0C7	Vibrio_phage	44.7	2.4e-112
WP_004090276.1|1197941_1198301_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038233055.1|1198392_1198629_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011097892.1|1198606_1199068_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011097893.1|1199057_1199387_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_004089579.1|1199379_1199877_-	lysozyme	NA	A0A2P9FI97	Pseudomonas_phage	60.3	1.6e-28
WP_004089578.1|1200080_1200419_-	BrnA antitoxin family protein	NA	K4NZP3	Burkholderia_phage	54.9	1.0e-07
WP_004089577.1|1200405_1200672_-	BrnT family toxin	NA	K4NX81	Burkholderia_phage	40.7	1.8e-07
WP_011097895.1|1200860_1201559_-	hypothetical protein	NA	C8CLH7	Xylella_phage	80.0	2.0e-98
1201189:1201206	attL	GCTTTGAGCTTGTCCAGC	NA	NA	NA	NA
WP_011098060.1|1201687_1202149_-	hypothetical protein	NA	A0A088F6Y8	Sulfitobacter_phage	43.9	1.2e-11
WP_004090689.1|1202145_1202910_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012382597.1|1202815_1203703_-	YdaU family protein	NA	A0A0P0I481	Acinetobacter_phage	44.0	2.0e-18
WP_011097897.1|1203699_1204488_-	Bro-N domain-containing protein	NA	C8CLG1	Xylella_phage	84.1	3.7e-117
WP_004088094.1|1204484_1205117_-	Bro-N domain-containing protein	NA	Q8HA44	Vibrio_phage	48.1	7.6e-20
WP_004088096.1|1205113_1205398_-	hypothetical protein	NA	C8CLH4	Xylella_phage	65.9	4.3e-23
WP_011097898.1|1205394_1205643_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004088102.1|1205639_1205828_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004088104.1|1205855_1206047_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004088108.1|1206305_1206551_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012382600.1|1206635_1207310_+	helix-turn-helix transcriptional regulator	NA	A0A0M3LQ62	Mannheimia_phage	32.6	2.6e-18
WP_004088112.1|1207360_1207972_-	Fic family protein	NA	NA	NA	NA	NA
WP_004088114.1|1207968_1208157_-	antitoxin VbhA family protein	NA	NA	NA	NA	NA
WP_012382601.1|1208548_1209085_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004088056.1|1209081_1209495_+	DUF1566 domain-containing protein	NA	NA	NA	NA	NA
WP_004088054.1|1209491_1209893_+	hypothetical protein	NA	C8CLG7	Xylella_phage	97.7	3.6e-68
WP_012382602.1|1209889_1210039_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004088050.1|1210124_1210403_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012382603.1|1210425_1210617_+	hypothetical protein	NA	C8CLG6	Xylella_phage	75.0	1.2e-16
WP_004088346.1|1210637_1210982_+	hypothetical protein	NA	U5P4J6	Shigella_phage	46.5	6.1e-16
WP_004088345.1|1211021_1211843_+	DUF2303 family protein	NA	K7ZMK3	Xanthomonas_citri_phage	43.1	2.3e-53
WP_004088344.1|1211858_1212785_+	phage recombination protein Bet	NA	U6C6J0	Ralstonia_phage	48.1	5.1e-57
WP_004088343.1|1212781_1214434_+	YqaJ viral recombinase family protein	NA	U6C712	Ralstonia_phage	39.3	7.4e-91
WP_011097903.1|1214462_1215227_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_004088341.1|1215487_1216108_+	Bro-N domain-containing protein	NA	A4PE61	Ralstonia_virus	44.6	1.8e-18
WP_004088340.1|1216174_1216621_+	single-stranded DNA-binding protein	NA	L7TJL2	Pseudomonas_virus	52.3	7.2e-33
WP_011097904.1|1216639_1216888_+	DUF4224 domain-containing protein	NA	C8CLF5	Xylella_phage	91.5	3.5e-37
WP_011097905.1|1216887_1217907_+|integrase	tyrosine-type recombinase/integrase	integrase	C8CLF4	Xylella_phage	97.3	4.7e-189
1219302:1219319	attR	GCTGGACAAGCTCAAAGC	NA	NA	NA	NA
>prophage 4
NC_004556	Xylella fastidiosa Temecula1, complete sequence	2519802	1276042	1331541	2519802	integrase,tail,terminase,holin,capsid,plate,portal	Xylella_phage(43.18%)	71	1321506:1321521	1333388:1333403
WP_011097922.1|1276042_1277236_-|integrase	integrase	integrase	V9IQN0	Stenotrophomonas_phage	53.4	5.1e-118
WP_011097923.1|1277235_1277508_-	hypothetical protein	NA	V9IQX6	Stenotrophomonas_phage	51.7	2.2e-08
WP_012382613.1|1277951_1278110_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004087359.1|1278576_1279119_-	pilin	NA	NA	NA	NA	NA
WP_004087360.1|1279529_1279742_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004087362.1|1280147_1280933_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_004087363.1|1280969_1283576_-	DNA mismatch repair protein MutS	NA	A0A1V0SGG8	Hokovirus	22.5	4.8e-28
WP_012382616.1|1284008_1284740_-	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
WP_004087365.1|1284819_1285680_+	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA	NA
WP_172632656.1|1285884_1286703_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004084923.1|1287475_1287820_-	RidA family protein	NA	NA	NA	NA	NA
WP_004088648.1|1288022_1288355_-	DNA-binding transcriptional regulator	NA	A0A0P0IRJ4	Acinetobacter_phage	39.8	5.4e-17
WP_011097927.1|1288546_1289629_-	phage late control D family protein	NA	A0A088FRU7	Escherichia_phage	45.6	9.7e-92
WP_004088371.1|1289619_1289838_-|tail	tail protein X	tail	A0A1W6JT40	Escherichia_phage	51.4	2.1e-14
WP_011097928.1|1289834_1290317_-|tail	phage tail protein	tail	A0A193GYE0	Enterobacter_phage	46.8	2.6e-28
WP_011097929.1|1290313_1292533_-|tail	phage tail tape measure protein	tail	V5YUN9	Pseudomonas_phage	44.1	2.8e-93
WP_011097930.1|1292659_1292947_-|tail	phage tail assembly protein	tail	A0A193GYZ8	Enterobacter_phage	44.6	3.1e-13
WP_004086986.1|1292949_1293459_-|tail	phage major tail tube protein	tail	A0A088FRU2	Escherichia_phage	52.7	5.3e-48
WP_011097931.1|1293458_1294637_-|tail	phage tail sheath family protein	tail	A0A088FVH5	Escherichia_phage	56.1	8.3e-137
WP_011097932.1|1294701_1296294_-|tail	tail fiber domain-containing protein	tail	V9IQX0	Stenotrophomonas_phage	36.1	5.4e-83
WP_011097610.1|1296301_1296859_-|tail	phage tail protein I	tail	V9IQK7	Stenotrophomonas_phage	54.4	1.1e-51
WP_011097611.1|1296851_1297745_-|plate	baseplate J/gp47 family protein	plate	V9IQV9	Stenotrophomonas_phage	46.4	1.9e-69
WP_004090694.1|1297744_1298083_-	GPW/gp25 family protein	NA	A0A088FV58	Escherichia_phage	61.3	5.4e-33
WP_004090907.1|1298232_1298496_+	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA	NA
WP_004090909.1|1298482_1298764_+	type II toxin-antitoxin system YafQ family toxin	NA	NA	NA	NA	NA
WP_011097612.1|1298800_1299388_-|plate	phage baseplate assembly protein V	plate	NA	NA	NA	NA
WP_011097613.1|1299384_1299927_-	hypothetical protein	NA	A0A1W6JT55	Escherichia_phage	41.6	2.9e-36
WP_011097614.1|1299902_1300424_-	hypothetical protein	NA	D5LGZ7	Escherichia_phage	34.3	3.7e-12
WP_011097935.1|1300420_1300744_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011097616.1|1300743_1301004_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011097936.1|1301021_1302896_-|capsid	phage major capsid protein	capsid	V5YSS9	Pseudomonas_phage	47.5	5.0e-160
WP_011097937.1|1302951_1304478_-|portal	phage portal protein	portal	A0A088FVG5	Escherichia_phage	50.9	8.8e-131
WP_004088901.1|1304474_1305026_-	hypothetical protein	NA	V5YTG8	Pseudomonas_phage	52.3	1.2e-40
WP_004088899.1|1305029_1306982_-|terminase	phage terminase large subunit family protein	terminase	A0A088FQV3	Escherichia_phage	63.3	9.2e-250
WP_011097938.1|1306974_1307550_-|terminase	terminase small subunit	terminase	A0A193GYK5	Enterobacter_phage	58.6	3.3e-46
WP_012382622.1|1307680_1307905_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011097939.1|1307906_1308368_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004086884.1|1308357_1308687_-|holin	phage holin family protein	holin	A0A172PZR6	Pseudomonas_phage	41.7	5.7e-19
WP_011097941.1|1308679_1309174_-	lysozyme	NA	A0A2I7RLY1	Vibrio_phage	50.3	1.7e-27
WP_011097942.1|1309140_1309758_-	hypothetical protein	NA	V5YTF6	Pseudomonas_phage	52.2	4.0e-26
WP_012382624.1|1310176_1312708_-	primase	NA	C8CLH6	Xylella_phage	75.1	0.0e+00
WP_011097944.1|1312843_1313410_-	Bro-N domain-containing protein	NA	C8CLH5	Xylella_phage	93.6	1.7e-95
WP_011097945.1|1313406_1313793_-	phage antirepressor	NA	C8CLH4	Xylella_phage	88.2	1.9e-58
WP_011097946.1|1313789_1314176_-	hypothetical protein	NA	C8CLH4	Xylella_phage	73.1	6.2e-41
WP_080729500.1|1314938_1315196_-	hypothetical protein	NA	C8CLH4	Xylella_phage	86.9	2.8e-37
WP_012382627.1|1315426_1315672_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011097950.1|1315732_1315981_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012382629.1|1315977_1316166_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012382630.1|1316219_1316786_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012382631.1|1316775_1317036_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_011097952.1|1317121_1317880_+	helix-turn-helix transcriptional regulator	NA	C8CLH0	Xylella_phage	40.0	2.2e-34
WP_011097953.1|1318040_1318580_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012382632.1|1318602_1318812_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012382633.1|1318865_1319249_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011097955.1|1319466_1319856_+	hypothetical protein	NA	C8CLG9	Xylella_phage	40.2	1.4e-08
WP_011097956.1|1319852_1320317_+	DUF1566 domain-containing protein	NA	NA	NA	NA	NA
WP_004088357.1|1320373_1320856_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012382634.1|1321155_1321347_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012382635.1|1321370_1321562_+	hypothetical protein	NA	C8CLG6	Xylella_phage	78.1	8.1e-18
1321506:1321521	attL	CGCCGCGCGCACTACG	NA	NA	NA	NA
WP_004090711.1|1321593_1321791_+	hypothetical protein	NA	C8CLG5	Xylella_phage	92.2	7.0e-25
WP_012382636.1|1321777_1322275_+	hypothetical protein	NA	C8CLG4	Xylella_phage	87.2	3.0e-48
WP_011097959.1|1322271_1323549_+	DUF2800 domain-containing protein	NA	C8CLG3	Xylella_phage	94.6	4.3e-232
WP_004090881.1|1323548_1324115_+	DUF2815 family protein	NA	C8CLG2	Xylella_phage	97.3	8.3e-103
WP_011097960.1|1324201_1325713_+	hypothetical protein	NA	C8CLG1	Xylella_phage	71.0	1.1e-186
WP_011097961.1|1325714_1327895_+	DNA polymerase	NA	C8CLG0	Xylella_phage	99.9	0.0e+00
WP_011097962.1|1327891_1328170_+	VRR-NUC domain-containing protein	NA	C8CLF9	Xylella_phage	100.0	1.6e-46
WP_012382639.1|1328171_1328618_-	DUF1640 domain-containing protein	NA	NA	NA	NA	NA
WP_011097964.1|1328702_1330121_+	DEAD/DEAH box helicase	NA	C8CLF7	Xylella_phage	98.7	1.3e-274
WP_012382640.1|1330117_1330282_+	hypothetical protein	NA	C8CLF6	Xylella_phage	88.9	1.1e-18
WP_011097965.1|1330274_1330532_+	DUF4224 domain-containing protein	NA	C8CLF5	Xylella_phage	87.1	4.7e-37
WP_011097966.1|1330521_1331541_+|integrase	tyrosine-type recombinase/integrase	integrase	C8CLF4	Xylella_phage	90.3	1.8e-172
1333388:1333403	attR	CGCCGCGCGCACTACG	NA	NA	NA	NA
>prophage 5
NC_004556	Xylella fastidiosa Temecula1, complete sequence	2519802	1373809	1397310	2519802	tail,integrase,plate	Xylella_phage(28.57%)	27	1374281:1374295	1394237:1394251
WP_004087352.1|1373809_1374685_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	25.5	1.1e-08
1374281:1374295	attL	CTGGACGAACCAACC	NA	NA	NA	NA
WP_004087353.1|1374681_1375659_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004087355.1|1375917_1376364_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011097983.1|1376467_1377712_-|tail	tail fiber protein	tail	A4PE46	Ralstonia_virus	32.7	1.5e-08
WP_011097869.1|1377715_1378276_-	DUF2612 domain-containing protein	NA	A0A0M5M1K4	Salmonella_phage	26.8	8.5e-07
WP_011097984.1|1378272_1379418_-|plate	baseplate J/gp47 family protein	plate	D0UIH5	Aggregatibacter_phage	49.2	2.1e-97
WP_004089252.1|1379516_1379813_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A141GEX6	Brucella_phage	58.1	3.3e-26
WP_004089254.1|1379816_1380122_+	putative addiction module antidote protein	NA	A4JWV1	Burkholderia_virus	43.6	1.1e-11
WP_011097986.1|1380132_1380486_-	hypothetical protein	NA	Q7Y5S5	Haemophilus_phage	49.6	8.2e-24
WP_004090764.1|1380482_1381124_-	hypothetical protein	NA	A0A0M5M1K7	Salmonella_phage	37.3	1.1e-31
WP_004090766.1|1381120_1381951_-	hypothetical protein	NA	D0UIH8	Aggregatibacter_phage	51.1	2.0e-76
WP_011097873.1|1381947_1382265_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004090769.1|1382264_1383035_-	hypothetical protein	NA	Q7Y5T0	Haemophilus_phage	34.8	2.9e-29
WP_004091377.1|1383145_1383373_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011097988.1|1383356_1383623_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A1S5SB46	Streptococcus_phage	43.9	3.4e-14
WP_011097989.1|1383633_1385523_-	hypothetical protein	NA	D0UII2	Aggregatibacter_phage	27.7	7.5e-23
WP_004085005.1|1385670_1386093_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011097990.1|1386089_1386527_-	DUF3277 family protein	NA	Q7Y5T4	Haemophilus_phage	62.4	1.4e-44
WP_080502629.1|1388601_1389201_+	hypothetical protein	NA	C8CLG0	Xylella_phage	97.5	5.5e-113
WP_011097962.1|1389197_1389476_+	VRR-NUC domain-containing protein	NA	C8CLF9	Xylella_phage	100.0	1.6e-46
WP_012382646.1|1389477_1389840_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011097622.1|1389924_1391343_+	DEAD/DEAH box helicase	NA	C8CLF7	Xylella_phage	99.8	4.4e-278
WP_012382647.1|1391339_1391504_+	hypothetical protein	NA	C8CLF6	Xylella_phage	92.6	5.7e-20
WP_011097965.1|1391496_1391754_+	DUF4224 domain-containing protein	NA	C8CLF5	Xylella_phage	87.1	4.7e-37
WP_011097994.1|1391743_1392763_+|integrase	tyrosine-type recombinase/integrase	integrase	C8CLF4	Xylella_phage	92.3	3.7e-178
WP_004088646.1|1392829_1394767_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.3	1.2e-68
1394237:1394251	attR	GGTTGGTTCGTCCAG	NA	NA	NA	NA
WP_011097995.1|1394928_1397310_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	29.1	1.4e-10
>prophage 6
NC_004556	Xylella fastidiosa Temecula1, complete sequence	2519802	1565807	1571647	2519802		Xylella_phage(33.33%)	10	NA	NA
WP_011098057.1|1565807_1566521_-	site-specific DNA-methyltransferase	NA	A0A2P1CGF5	Mycobacterium_phage	52.3	7.9e-58
WP_011098058.1|1566871_1567153_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_004089519.1|1567162_1567462_+	HigA family addiction module antidote protein	NA	M9MUN2	Rhodococcus_phage	45.9	1.1e-13
WP_004085025.1|1567641_1567977_-	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA	NA
WP_004089517.1|1567973_1568228_-	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA	NA
WP_011098059.1|1568280_1568979_-	hypothetical protein	NA	C8CLH7	Xylella_phage	79.6	5.8e-98
WP_011098060.1|1569107_1569569_-	hypothetical protein	NA	A0A088F6Y8	Sulfitobacter_phage	43.9	1.2e-11
WP_004090689.1|1569565_1570330_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011098062.1|1570235_1571351_-	YdaU family protein	NA	A0A0R6PKK6	Moraxella_phage	48.4	1.2e-17
WP_080513037.1|1571347_1571647_-	hypothetical protein	NA	C8CLG1	Xylella_phage	80.8	1.3e-41
>prophage 7
NC_004556	Xylella fastidiosa Temecula1, complete sequence	2519802	2009726	2018928	2519802		Xylella_phage(100.0%)	12	NA	NA
WP_004087234.1|2009726_2010128_+	hypothetical protein	NA	C8CLG7	Xylella_phage	95.5	5.2e-67
WP_012382634.1|2010124_2010316_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012382635.1|2010339_2010531_+	hypothetical protein	NA	C8CLG6	Xylella_phage	78.1	8.1e-18
WP_004090711.1|2010562_2010760_+	hypothetical protein	NA	C8CLG5	Xylella_phage	92.2	7.0e-25
WP_012382636.1|2010746_2011244_+	hypothetical protein	NA	C8CLG4	Xylella_phage	87.2	3.0e-48
WP_011097959.1|2011240_2012518_+	DUF2800 domain-containing protein	NA	C8CLG3	Xylella_phage	94.6	4.3e-232
WP_004090881.1|2012517_2013084_+	DUF2815 family protein	NA	C8CLG2	Xylella_phage	97.3	8.3e-103
WP_011097960.1|2013170_2014682_+	hypothetical protein	NA	C8CLG1	Xylella_phage	71.0	1.1e-186
WP_011097961.1|2014683_2016864_+	DNA polymerase	NA	C8CLG0	Xylella_phage	99.9	0.0e+00
WP_011097962.1|2016860_2017139_+	VRR-NUC domain-containing protein	NA	C8CLF9	Xylella_phage	100.0	1.6e-46
WP_011098229.1|2017140_2017425_-	DUF1640 domain-containing protein	NA	NA	NA	NA	NA
WP_011098230.1|2017509_2018928_+	DEAD/DEAH box helicase	NA	C8CLF7	Xylella_phage	99.8	7.6e-278
