The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_003902	Xanthomonas campestris pv. campestris str. ATCC 33913, complete sequence	5076188	743624	750007	5076188		Enterobacteria_phage(50.0%)	6	NA	NA
WP_011035864.1|743624_744680_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	47.3	1.5e-81
WP_012439277.1|744743_745631_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	57.8	1.2e-95
WP_011035866.1|745627_746185_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	49.4	4.3e-43
WP_011035867.1|746181_747090_+	dTDP-4-dehydrorhamnose reductase	NA	A0A1D7XFA3	Escherichia_phage	33.6	2.6e-29
WP_011035868.1|747211_748615_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	NA	A0A1V0SH58	Hokovirus	29.9	1.1e-47
WP_014506571.1|748660_750007_-	phosphohexose mutase	NA	A0A127AWJ1	Bacillus_phage	26.4	1.2e-30
>prophage 2
NC_003902	Xanthomonas campestris pv. campestris str. ATCC 33913, complete sequence	5076188	1862424	1898894	5076188	tRNA,integrase,transposase	Leptospira_phage(50.0%)	35	1876501:1876524	1897890:1897913
WP_011036776.1|1862424_1863705_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	55.1	1.8e-97
WP_011036777.1|1863982_1865002_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019237801.1|1865347_1866814_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_011036779.1|1866900_1868187_+	SidA/IucD/PvdA family monooxygenase	NA	NA	NA	NA	NA
WP_138922051.1|1868248_1868692_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011036780.1|1868949_1870929_-	DUF3732 domain-containing protein	NA	NA	NA	NA	NA
WP_138922050.1|1870910_1871441_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011036781.1|1871437_1872652_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011036782.1|1872891_1873251_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011036783.1|1873268_1873583_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011036784.1|1873628_1874426_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011036785.1|1874501_1874843_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019237766.1|1875003_1876077_+	CHAT domain-containing protein	NA	NA	NA	NA	NA
WP_087942065.1|1876373_1877481_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	37.9	2.9e-43
1876501:1876524	attL	CCAAGTACGGCGGCATGGAGGCCG	NA	NA	NA	NA
WP_019237763.1|1877499_1878429_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011035385.1|1878688_1879669_-|transposase	IS5 family transposase	transposase	A0A077K814	Ralstonia_phage	61.0	1.3e-98
WP_138922049.1|1879721_1880456_-	hypothetical protein	NA	NA	NA	NA	NA
WP_043877799.1|1880862_1881132_+	EexN family lipoprotein	NA	NA	NA	NA	NA
WP_011036791.1|1881306_1882302_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_019237759.1|1882327_1883719_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_011036793.1|1884099_1884369_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019237757.1|1884533_1885001_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016945337.1|1885740_1886247_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016945339.1|1886971_1887304_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011036798.1|1887702_1888182_+	DNA repair protein RadC	NA	NA	NA	NA	NA
WP_011036799.1|1888197_1888926_+	DUF1629 domain-containing protein	NA	NA	NA	NA	NA
WP_011036800.1|1888977_1889457_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011036801.1|1889519_1889879_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011036802.1|1890007_1890607_-	hypothetical protein	NA	NA	NA	NA	NA
WP_040942343.1|1890634_1890916_-	hypothetical protein	NA	NA	NA	NA	NA
WP_040941461.1|1891428_1892088_+	DUF1629 domain-containing protein	NA	NA	NA	NA	NA
WP_011036804.1|1892124_1896141_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011036805.1|1896180_1896828_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138922048.1|1896886_1897702_+	hypothetical protein	NA	NA	NA	NA	NA
WP_087942919.1|1897762_1898894_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	41.9	8.2e-49
1897890:1897913	attR	CCAAGTACGGCGGCATGGAGGCCG	NA	NA	NA	NA
>prophage 3
NC_003902	Xanthomonas campestris pv. campestris str. ATCC 33913, complete sequence	5076188	1997519	2007995	5076188	tRNA	Micromonas_pusilla_virus(16.67%)	7	NA	NA
WP_011036897.1|1997519_1999196_+	2-polyprenylphenol 6-hydroxylase	NA	G8DDN0	Micromonas_pusilla_virus	27.7	9.3e-41
WP_011036898.1|1999262_1999904_+	transcriptional repressor LexA	NA	A0A1W6JNS2	Morganella_phage	40.2	2.4e-13
WP_011036899.1|2000076_2001108_+	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	61.3	1.6e-112
WP_011036900.1|2001223_2001712_+	recombination regulator RecX	NA	NA	NA	NA	NA
WP_011036901.1|2001813_2004462_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.8	1.4e-83
WP_011036902.1|2004603_2004816_+	carbon storage regulator CsrA	NA	A0A2I7RT00	Vibrio_phage	65.5	1.5e-12
WP_011036903.1|2006030_2007995_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	43.6	1.3e-12
>prophage 4
NC_003902	Xanthomonas campestris pv. campestris str. ATCC 33913, complete sequence	5076188	2419069	2489455	5076188	transposase,coat	Xanthomonas_phage(66.67%)	58	NA	NA
WP_087942925.1|2419069_2419868_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_043877759.1|2420098_2421490_-	alginate export family protein	NA	NA	NA	NA	NA
WP_011037214.1|2421496_2422387_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_011037215.1|2422685_2422994_-	XapX domain-containing protein	NA	NA	NA	NA	NA
WP_011037216.1|2423659_2424028_-	response regulator	NA	NA	NA	NA	NA
WP_011037217.1|2424111_2425428_+	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
WP_011037218.1|2425758_2434416_+	cyclic beta 1-2 glucan synthetase	NA	NA	NA	NA	NA
WP_011037219.1|2434412_2434697_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014507805.1|2434863_2435172_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165442008.1|2436207_2436375_+	hypothetical protein	NA	A0A077JGB8	Xanthomonas_phage	62.7	5.1e-08
WP_029628957.1|2436466_2437408_+	replication initiation protein	NA	A0A077JDC0	Xanthomonas_phage	96.5	1.9e-176
WP_011037222.1|2437404_2437701_+	G5P family DNA-binding protein	NA	A0A1W6DXU2	Xanthomonas_phage	90.7	2.1e-44
WP_019237633.1|2437704_2437956_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005918131.1|2437983_2438112_+|coat	Phi-Lf prophage-derived major coat protein	coat	NA	NA	NA	NA
WP_164923334.1|2438719_2439067_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019237631.1|2439060_2439300_+	hypothetical protein	NA	Q9XJ91	Xanthomonas_phage	92.4	9.1e-35
WP_011037230.1|2439310_2439631_+|coat	minor coat protein	coat	Q4LAU3	Stenotrophomonas_phage	44.2	5.0e-20
WP_011037227.1|2439632_2440955_+	zonular occludens toxin domain-containing protein	NA	Q4LAU4	Stenotrophomonas_phage	56.0	5.3e-132
WP_075272161.1|2440974_2441283_-	chloride channel protein	NA	A0A1W6DXV7	Xanthomonas_phage	90.3	1.0e-46
WP_011037228.1|2441349_2441676_-	hypothetical protein	NA	Q38057	Xanthomonas_phage	60.8	3.9e-20
WP_011037229.1|2441849_2442188_+	hypothetical protein	NA	Q38057	Xanthomonas_phage	100.0	4.7e-61
WP_075272161.1|2442254_2442563_+	chloride channel protein	NA	A0A1W6DXV7	Xanthomonas_phage	90.3	1.0e-46
WP_011037227.1|2442582_2443905_-	zonular occludens toxin domain-containing protein	NA	Q4LAU4	Stenotrophomonas_phage	56.0	5.3e-132
WP_011037230.1|2443906_2444227_-|coat	minor coat protein	coat	Q4LAU3	Stenotrophomonas_phage	44.2	5.0e-20
WP_019237631.1|2444237_2444477_-	hypothetical protein	NA	Q9XJ91	Xanthomonas_phage	92.4	9.1e-35
WP_164923334.1|2444470_2444818_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005918131.1|2445425_2445554_-|coat	Phi-Lf prophage-derived major coat protein	coat	NA	NA	NA	NA
WP_019237633.1|2445581_2445833_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011037222.1|2445836_2446133_-	G5P family DNA-binding protein	NA	A0A1W6DXU2	Xanthomonas_phage	90.7	2.1e-44
WP_043877755.1|2446129_2447071_-	replication initiation protein	NA	A0A077JDC0	Xanthomonas_phage	96.8	8.5e-177
WP_011037232.1|2447455_2447920_+	DUF3693 domain-containing protein	NA	NA	NA	NA	NA
WP_011037233.1|2447868_2448519_-	conjugal transfer protein TrbP	NA	A0A077JBM8	Xanthomonas_phage	48.1	8.8e-48
WP_164923335.1|2448647_2450441_-	transmembrane repetitive protein	NA	NA	NA	NA	NA
WP_011037235.1|2450454_2451054_-	NfuA family Fe-S biogenesis protein	NA	NA	NA	NA	NA
WP_011037236.1|2451146_2451503_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_011037237.1|2451499_2451922_+	energy transducer TonB	NA	NA	NA	NA	NA
WP_011037238.1|2452049_2452868_+	zinc transporter ZupT	NA	NA	NA	NA	NA
WP_011037239.1|2453254_2454238_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_011037240.1|2454641_2458205_+	ribonuclease E	NA	NA	NA	NA	NA
WP_011269749.1|2458286_2458496_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011037241.1|2458772_2459420_-	response regulator	NA	NA	NA	NA	NA
WP_011037242.1|2459635_2460397_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_011037243.1|2460430_2460796_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014507823.1|2460856_2461288_+	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_011037245.1|2461299_2462553_+	TIGR03862 family flavoprotein	NA	NA	NA	NA	NA
WP_011037246.1|2462536_2463829_-	nucleotide sugar dehydrogenase	NA	M1HEP0	Acanthocystis_turfacea_Chlorella_virus	29.9	1.4e-23
WP_011037247.1|2464067_2465480_-	oxygen-independent coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
WP_011037248.1|2466219_2466495_-	DUF3577 domain-containing protein	NA	NA	NA	NA	NA
WP_011269748.1|2467157_2467604_+	avidin/streptavidin family protein	NA	NA	NA	NA	NA
WP_011037249.1|2467750_2469457_+	tannase/feruloyl esterase family alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_019237643.1|2469897_2476536_+	DUF3320 domain-containing protein	NA	NA	NA	NA	NA
WP_164517437.1|2476571_2478239_+	TIGR04141 family sporadically distributed protein	NA	NA	NA	NA	NA
WP_074038421.1|2480489_2481137_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011037255.1|2481227_2482565_+	avirulence protein	NA	NA	NA	NA	NA
WP_011037256.1|2482803_2483769_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011037257.1|2483855_2485037_-	GIY-YIG nuclease family protein	NA	NA	NA	NA	NA
WP_011037258.1|2485029_2487129_-	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
WP_011035783.1|2488087_2489455_-|transposase	IS5-like element IS1478 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	63.6	2.8e-80
>prophage 5
NC_003902	Xanthomonas campestris pv. campestris str. ATCC 33913, complete sequence	5076188	3479550	3577811	5076188	terminase,integrase,plate,holin,capsid,head,tail,tRNA,portal	Stenotrophomonas_phage(45.45%)	106	3530234:3530254	3577732:3577752
WP_011038052.1|3479550_3480270_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
WP_011038053.1|3480745_3482752_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	33.2	5.6e-93
WP_011038054.1|3483256_3483781_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011038055.1|3483793_3486238_-	penicillin-binding protein 1B	NA	NA	NA	NA	NA
WP_019237395.1|3486333_3488436_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_016945254.1|3490113_3492273_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_002812057.1|3492578_3492659_+	pyrroloquinoline quinone precursor peptide PqqA	NA	NA	NA	NA	NA
WP_011038060.1|3492725_3493625_+	pyrroloquinoline quinone biosynthesis protein PqqB	NA	NA	NA	NA	NA
WP_011038061.1|3493621_3494374_+	pyrroloquinoline-quinone synthase PqqC	NA	NA	NA	NA	NA
WP_011038062.1|3494370_3494649_+	pyrroloquinoline quinone biosynthesis peptide chaperone PqqD	NA	NA	NA	NA	NA
WP_011038063.1|3494645_3495776_+	pyrroloquinoline quinone biosynthesis protein PqqE	NA	NA	NA	NA	NA
WP_011038064.1|3495836_3496349_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011038065.1|3496611_3498099_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011038066.1|3498441_3499476_+	glucokinase	NA	NA	NA	NA	NA
WP_011038067.1|3499582_3502219_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_011038068.1|3502470_3506586_-	ATP-dependent RNA helicase HrpA	NA	A0A1V0SDF7	Indivirus	28.8	1.2e-49
WP_011038069.1|3506673_3507225_+	DNA starvation/stationary phase protection protein	NA	A0A2H4N7L5	Lake_Baikal_phage	32.4	8.9e-17
WP_011038070.1|3507579_3509382_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	4.4e-81
WP_011038071.1|3509521_3510004_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011038072.1|3510082_3510487_+	response regulator	NA	NA	NA	NA	NA
WP_011038074.1|3511934_3512645_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_016945258.1|3512829_3513036_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011269572.1|3513623_3513971_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011038076.1|3514133_3514559_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_011038077.1|3514724_3515351_-	amino acid transporter	NA	NA	NA	NA	NA
WP_011038078.1|3515458_3516376_+	LysR family transcriptional regulator ArgP	NA	NA	NA	NA	NA
WP_165442012.1|3516448_3518188_-	chloride channel protein	NA	NA	NA	NA	NA
WP_011269569.1|3518817_3520071_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_011038081.1|3520206_3520557_-	response regulator	NA	NA	NA	NA	NA
WP_029628883.1|3520553_3521561_-	PAS domain-containing protein	NA	NA	NA	NA	NA
WP_011269567.1|3521967_3522207_+	hypothetical protein	NA	NA	NA	NA	NA
WP_158011231.1|3522396_3522714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011038084.1|3522602_3523028_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011038085.1|3523233_3523569_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011038086.1|3523919_3524399_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A218MND2	uncultured_virus	38.7	1.0e-13
WP_011038087.1|3524398_3525685_+	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	42.7	4.0e-84
WP_011038088.1|3526403_3527630_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
WP_011038089.1|3527629_3528097_+	DUF4411 family protein	NA	NA	NA	NA	NA
WP_011038090.1|3528128_3528833_-	site-specific DNA-methyltransferase	NA	V9IQV5	Stenotrophomonas_phage	78.6	2.1e-111
WP_010364016.1|3528750_3528996_-	Com family DNA-binding transcriptional regulator	NA	V9IQK2	Stenotrophomonas_phage	52.5	1.8e-14
WP_011038091.1|3529021_3530053_-|portal	phage portal protein	portal	A0A2H4J922	uncultured_Caudovirales_phage	73.0	5.4e-140
WP_011038092.1|3530052_3531837_-|terminase	terminase ATPase subunit family protein	terminase	V9IQL5	Stenotrophomonas_phage	76.1	4.3e-270
3530234:3530254	attL	GCCACGTCGGTCCAGCCGGCG	NA	NA	NA	NA
WP_011038093.1|3531958_3532801_+|capsid	GPO family capsid scaffolding protein	capsid	A0A2H4J928	uncultured_Caudovirales_phage	54.0	1.2e-68
WP_011038094.1|3532849_3533866_+|capsid	phage major capsid protein, P2 family	capsid	Q9ZXM3	Pseudomonas_virus	71.1	8.4e-138
WP_011038095.1|3533869_3534589_+|terminase	terminase	terminase	Q9ZXM2	Pseudomonas_virus	62.8	7.7e-69
WP_011038096.1|3534687_3535155_+|head	head completion/stabilization protein	head	V9IQW6	Stenotrophomonas_phage	49.0	2.7e-30
WP_005917735.1|3535154_3535364_+|tail	tail protein X	tail	K4PAW7	Burkholderia_phage	59.4	7.0e-15
WP_005929454.1|3535368_3535725_+	membrane protein	NA	V9IQG9	Stenotrophomonas_phage	56.1	3.5e-22
WP_005922189.1|3535717_3535993_+|holin	phage holin family protein	holin	V9IQV8	Stenotrophomonas_phage	59.8	1.3e-21
WP_164923337.1|3535992_3536631_+	glycoside hydrolase family 19 protein	NA	V9IQK6	Stenotrophomonas_phage	61.5	1.6e-49
WP_011038098.1|3536630_3537119_+	hypothetical protein	NA	A0A077K9R7	Ralstonia_phage	51.0	9.9e-28
WP_011038099.1|3537115_3537535_+|tail	phage tail protein	tail	A0A2H4J906	uncultured_Caudovirales_phage	65.2	1.7e-39
WP_011038100.1|3537522_3537981_+	phage virion morphogenesis protein	NA	V9IQH0	Stenotrophomonas_phage	56.1	4.9e-37
WP_164923338.1|3538020_3538233_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164923339.1|3538267_3538954_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011038101.1|3539111_3540002_+|plate	baseplate J/gp47 family protein	plate	V9IQV9	Stenotrophomonas_phage	53.0	6.8e-83
WP_011038102.1|3539994_3540543_+|tail	phage tail protein I	tail	V9IQK7	Stenotrophomonas_phage	53.1	2.7e-50
WP_011038103.1|3540546_3541752_+|tail	tail protein	tail	E5FFH1	Burkholderia_phage	41.6	2.1e-31
WP_164923340.1|3541753_3541981_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011038105.1|3542059_3542623_+|plate	phage baseplate assembly protein V	plate	Q9ZXL0	Pseudomonas_virus	45.9	1.1e-25
WP_011038106.1|3542619_3542979_+	GPW/gp25 family protein	NA	V9IQW0	Stenotrophomonas_phage	64.4	1.9e-36
WP_011038107.1|3542990_3544157_+|tail	phage tail sheath protein	tail	E5FFG9	Burkholderia_phage	63.9	6.5e-134
WP_011038108.1|3544187_3544697_+|tail	phage major tail tube protein	tail	V9IQX1	Stenotrophomonas_phage	76.9	4.9e-70
WP_011038109.1|3544742_3545045_+|tail	phage tail assembly protein	tail	V9IQM4	Stenotrophomonas_phage	67.4	3.7e-25
WP_005922203.1|3545053_3545167_+|tail	GpE family phage tail protein	tail	A0A0M4R2P3	Salmonella_phage	68.6	4.2e-06
WP_011038110.1|3545196_3548067_+|tail	phage tail tape measure protein	tail	V9IQL1	Stenotrophomonas_phage	53.5	3.3e-203
WP_011038111.1|3548079_3548481_+|tail	phage tail protein	tail	V9IQX3	Stenotrophomonas_phage	59.8	5.1e-38
WP_011038112.1|3548477_3549464_+	phage late control D family protein	NA	V9IQM7	Stenotrophomonas_phage	54.8	3.0e-92
WP_164923341.1|3549549_3550698_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157382238.1|3550678_3551002_+	DUF4325 domain-containing protein	NA	A0A2H4J4X6	uncultured_Caudovirales_phage	32.0	1.7e-07
WP_164923342.1|3551081_3551471_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011038115.1|3551777_3552206_-	helix-turn-helix transcriptional regulator	NA	A4JWR8	Burkholderia_virus	42.8	1.4e-17
WP_011038116.1|3552272_3552527_+	DNA-binding protein	NA	A0A1B0VRL1	Pseudomonas_phage	46.7	1.7e-07
WP_074056808.1|3552533_3552845_+	ogr/Delta-like zinc finger family protein	NA	V9IQW3	Stenotrophomonas_phage	56.0	8.5e-25
WP_164923343.1|3552867_3553149_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011038118.1|3553145_3553385_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164923344.1|3553388_3556076_+	toprim domain-containing protein	NA	V9IQW5	Stenotrophomonas_phage	69.9	0.0e+00
WP_104533278.1|3556387_3556606_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164923345.1|3556602_3556881_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011038121.1|3556877_3557141_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011038122.1|3557219_3557630_+	hypothetical protein	NA	NA	NA	NA	NA
WP_165442010.1|3557622_3557799_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164923360.1|3557821_3558067_+	hypothetical protein	NA	NA	NA	NA	NA
WP_104600173.1|3558063_3558309_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164923346.1|3558305_3558578_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011038127.1|3558574_3558781_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016851175.1|3558777_3558999_+	hypothetical protein	NA	V9IQX6	Stenotrophomonas_phage	58.3	1.4e-18
WP_011038129.1|3558998_3560198_+|integrase	tyrosine-type recombinase/integrase	integrase	V9IQN0	Stenotrophomonas_phage	53.5	2.3e-118
WP_011038130.1|3560465_3561140_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A088F6S9	Vibrio_phage	34.2	1.9e-24
WP_011038131.1|3561336_3562020_-	7-carboxy-7-deazaguanine synthase QueE	NA	J9PV61	Bacillus_phage	42.4	6.4e-41
WP_011038132.1|3562064_3562883_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_011038133.1|3562889_3563408_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_011038134.1|3563465_3564785_-	Tol-Pal system beta propeller repeat protein TolB	NA	NA	NA	NA	NA
WP_011038135.1|3565049_3566087_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_011038136.1|3566076_3566526_-	protein TolR	NA	NA	NA	NA	NA
WP_011038137.1|3566617_3567397_-	protein TolQ	NA	NA	NA	NA	NA
WP_011038138.1|3567408_3567867_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_011038139.1|3567919_3568960_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	28.2	2.1e-06
WP_057671711.1|3568999_3570121_-	SMI1/KNR4 family protein	NA	NA	NA	NA	NA
WP_011038140.1|3570123_3572031_-	potassium transporter Kup	NA	A7J6G4	Paramecium_bursaria_Chlorella_virus	31.8	2.8e-78
WP_006450983.1|3572230_3572815_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_011038141.1|3572927_3573452_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_011038142.1|3573581_3574310_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_012437666.1|3574385_3575045_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_011038144.1|3575169_3575697_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_011038145.1|3576044_3577811_-|tRNA	aspartate--tRNA ligase	tRNA	NA	NA	NA	NA
3577732:3577752	attR	GCCACGTCGGTCCAGCCGGCG	NA	NA	NA	NA
>prophage 6
NC_003902	Xanthomonas campestris pv. campestris str. ATCC 33913, complete sequence	5076188	3687911	3728341	5076188	integrase,transposase	Leptospira_phage(42.86%)	28	3705738:3705753	3731586:3731601
WP_087942071.1|3687911_3689055_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	58.8	1.8e-88
WP_011038228.1|3689148_3690087_+	TIGR03756 family integrating conjugative element protein	NA	NA	NA	NA	NA
WP_029628874.1|3690097_3691498_+	integrating conjugative element protein	NA	NA	NA	NA	NA
WP_011269554.1|3691494_3691842_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029628873.1|3691857_3693381_+	conjugal transfer protein TraG N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_029628872.1|3693392_3693752_-	DUF3742 family protein	NA	NA	NA	NA	NA
WP_011038231.1|3693976_3694735_+	type IV toxin-antitoxin system AbiEi family antitoxin	NA	NA	NA	NA	NA
WP_011038232.1|3694727_3695654_+	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA	NA
WP_019237341.1|3695809_3696100_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011038233.1|3696203_3697229_-	GGDEF domain-containing protein	NA	G3MA91	Bacillus_virus	34.8	5.3e-23
WP_011035783.1|3698991_3700359_-|transposase	IS5-like element IS1478 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	63.6	2.8e-80
WP_087942070.1|3700519_3701627_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	38.3	2.2e-43
WP_011038238.1|3702797_3703457_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011038239.1|3703453_3703984_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011038240.1|3704381_3704930_-	DUF4189 domain-containing protein	NA	NA	NA	NA	NA
WP_011038241.1|3704998_3706138_-	type IV secretion system protein	NA	NA	NA	NA	NA
3705738:3705753	attL	GCATCGGAGGCGGTGC	NA	NA	NA	NA
WP_016848927.1|3706169_3706817_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011038243.1|3707838_3709377_-	MASE1 domain-containing protein	NA	NA	NA	NA	NA
WP_011038245.1|3710566_3713830_+	DNA helicase	NA	NA	NA	NA	NA
WP_087942070.1|3714645_3715754_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	38.3	2.2e-43
WP_100101058.1|3716230_3717332_+|transposase	IS3-like element IS1404 family transposase	transposase	S5WIU1	Leptospira_phage	41.9	4.5e-44
WP_075287146.1|3718015_3722041_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_011038250.1|3722793_3723678_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019237334.1|3723705_3723966_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_011038252.1|3724101_3724752_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011038253.1|3724822_3725824_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019237332.1|3725856_3726276_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019237331.1|3726460_3728341_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A0U1UNT3	Pseudomonas_phage	51.1	7.3e-103
3731586:3731601	attR	GCACCGCCTCCGATGC	NA	NA	NA	NA
>prophage 7
NC_003902	Xanthomonas campestris pv. campestris str. ATCC 33913, complete sequence	5076188	4124552	4163743	5076188	transposase,protease	Shigella_phage(33.33%)	28	NA	NA
WP_138922025.1|4124552_4125655_-|transposase	IS3-like element IS1404 family transposase	transposase	S5WIU1	Leptospira_phage	41.4	1.3e-43
WP_011038563.1|4126813_4127932_-	rod shape-determining protein RodA	NA	NA	NA	NA	NA
WP_011038564.1|4127928_4129989_-	penicillin-binding protein 2	NA	NA	NA	NA	NA
WP_011038565.1|4129992_4130478_-	rod shape-determining protein MreD	NA	NA	NA	NA	NA
WP_011038566.1|4130474_4131824_-	rod shape-determining protein MreC	NA	NA	NA	NA	NA
WP_003482734.1|4132156_4133203_-	rod shape-determining protein	NA	F2Y0P3	Organic_Lake_phycodnavirus	21.2	2.7e-06
WP_011038567.1|4133479_4134412_+	carbohydrate kinase family protein	NA	NA	NA	NA	NA
WP_019237253.1|4135091_4137065_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_087942922.1|4137458_4138256_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_011038570.1|4138558_4140943_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_011038571.1|4140953_4142060_-	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	NA	E3SJ82	Synechococcus_phage	28.5	9.2e-29
WP_011038572.1|4142094_4143141_-	beta-propeller fold lactonase family protein	NA	NA	NA	NA	NA
WP_029628851.1|4143137_4143779_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_011038574.1|4143804_4145559_-	quinoprotein dehydrogenase-associated putative ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_087942063.1|4145885_4147030_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	58.8	3.1e-88
WP_014509025.1|4149649_4150273_-	HAD family hydrolase	NA	NA	NA	NA	NA
WP_011038578.1|4150276_4150996_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019237247.1|4151621_4153601_-	M1 family metallopeptidase	NA	NA	NA	NA	NA
WP_012437339.1|4153645_4154536_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_014509029.1|4154726_4155488_-	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA	NA
WP_011038582.1|4155575_4157225_+	MFS transporter	NA	NA	NA	NA	NA
WP_011038583.1|4157221_4158313_+	HlyD family secretion protein	NA	NA	NA	NA	NA
WP_011038584.1|4158338_4158839_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_011038585.1|4158835_4159291_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_011038586.1|4159509_4159809_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011038587.1|4160066_4161434_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A2H5BJT2	Erwinia_phage	29.8	3.6e-43
WP_011038588.1|4161552_4162104_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_087942080.1|4162599_4163743_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	58.8	3.1e-88
>prophage 8
NC_003902	Xanthomonas campestris pv. campestris str. ATCC 33913, complete sequence	5076188	4245224	4267707	5076188	transposase,plate,protease	Leptospira_phage(60.0%)	22	NA	NA
WP_011038650.1|4245224_4246166_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_019237241.1|4246446_4246908_+	DUF4126 family protein	NA	NA	NA	NA	NA
WP_012437278.1|4247073_4247466_-	VOC family protein	NA	NA	NA	NA	NA
WP_011038653.1|4247559_4248531_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_011038654.1|4248684_4249956_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011038655.1|4250239_4251826_+	SDR family oxidoreductase	NA	A0A167RQ01	Powai_lake_megavirus	28.6	3.6e-34
WP_011269492.1|4251967_4252381_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011038656.1|4252545_4253100_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019237244.1|4253362_4254136_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_011038658.1|4254329_4254743_+	GFA family protein	NA	NA	NA	NA	NA
WP_129588839.1|4254932_4255169_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011038659.1|4255395_4256487_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011038660.1|4256584_4257184_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012437268.1|4257349_4257748_-	type I addiction module toxin, SymE family	NA	NA	NA	NA	NA
WP_012437267.1|4257744_4258017_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011035386.1|4258231_4259446_-|transposase	IS4-like element IS1481A family transposase	transposase	A0A0F7LAS3	uncultured_marine_virus	31.5	2.7e-50
WP_087942065.1|4259720_4260828_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	37.9	2.9e-43
WP_011038664.1|4260785_4261196_+|plate	phage baseplate assembly protein V	plate	NA	NA	NA	NA
WP_154727182.1|4261360_4262242_-	hypothetical protein	NA	NA	NA	NA	NA
WP_100101058.1|4262586_4263688_+|transposase	IS3-like element IS1404 family transposase	transposase	S5WIU1	Leptospira_phage	41.9	4.5e-44
WP_011038665.1|4263774_4265055_+	restriction endonuclease	NA	NA	NA	NA	NA
WP_087942920.1|4266574_4267707_-|transposase	IS3-like element ISXca1 family transposase	transposase	S5WIU1	Leptospira_phage	42.8	3.7e-49
>prophage 9
NC_003902	Xanthomonas campestris pv. campestris str. ATCC 33913, complete sequence	5076188	4934943	5024085	5076188	transposase,tail	Bacillus_phage(11.76%)	58	NA	NA
WP_087942071.1|4934943_4936087_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	58.8	1.8e-88
WP_138922064.1|4936043_4938116_-	N-6 DNA methylase	NA	A0A142K7G3	Mycobacterium_phage	28.3	3.8e-36
WP_011039212.1|4938512_4939142_+	thymidine kinase	NA	A0A023W530	Serratia_phage	54.5	4.0e-53
WP_011039213.1|4939478_4940726_+	GAF domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
WP_011039214.1|4940753_4942355_-	glucan biosynthesis protein D	NA	NA	NA	NA	NA
WP_011039215.1|4942427_4943546_-	DUF4380 domain-containing protein	NA	NA	NA	NA	NA
WP_011039216.1|4944182_4944998_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	A0A127AWE5	Bacillus_phage	26.5	2.8e-19
WP_011039217.1|4951500_4952685_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_011039218.1|4952996_4954901_-	GAF domain-containing protein	NA	B5LWN8	Feldmannia_species_virus	31.6	1.1e-18
WP_012439682.1|4954897_4955491_-	biliverdin-producing heme oxygenase	NA	NA	NA	NA	NA
WP_011039220.1|4955586_4956849_-	tetracycline resistance MFS efflux pump	NA	NA	NA	NA	NA
WP_011039221.1|4957403_4959563_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_011039222.1|4959750_4959960_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011039223.1|4960202_4960592_-	YchJ family protein	NA	NA	NA	NA	NA
WP_011039225.1|4961597_4962413_+	TSUP family transporter	NA	NA	NA	NA	NA
WP_011270106.1|4962456_4964517_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_011039227.1|4964958_4968975_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_019238148.1|4969380_4969527_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011039228.1|4970090_4970798_-	DUF4194 domain-containing protein	NA	NA	NA	NA	NA
WP_011039229.1|4970784_4972254_-	DUF3375 domain-containing protein	NA	NA	NA	NA	NA
WP_016945065.1|4972273_4972876_-	GTP cyclohydrolase I FolE	NA	E7DN69	Pneumococcus_phage	49.5	6.2e-48
WP_011039231.1|4973009_4973453_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_040942423.1|4973535_4973745_+	DUF1656 domain-containing protein	NA	NA	NA	NA	NA
WP_016945064.1|4973741_4974665_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_011039234.1|4974661_4976113_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_011039235.1|4976109_4978410_+	FUSC family protein	NA	NA	NA	NA	NA
WP_011039236.1|4978763_4980125_-	MFS transporter	NA	Q6JIH2	Burkholderia_virus	26.7	1.9e-31
WP_011039237.1|4980317_4980863_-	DUF1905 domain-containing protein	NA	NA	NA	NA	NA
WP_019238146.1|4980973_4981876_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014509612.1|4981976_4982816_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_043877851.1|4982959_4984225_+	cardiolipin synthase B	NA	NA	NA	NA	NA
WP_011039241.1|4984256_4984772_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014509615.1|4985030_4985237_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012439694.1|4985223_4986339_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_019238144.1|4986967_4988587_+	enterochelin esterase	NA	NA	NA	NA	NA
WP_016945062.1|4989152_4989554_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_164923354.1|4989869_4990325_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011039247.1|4990437_4991313_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011039250.1|4992295_4993810_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011270109.1|4994899_4995112_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012439699.1|4995134_4995464_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016945057.1|4995575_4995821_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_011039253.1|4995845_4996742_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019238140.1|4997102_4997939_+	restriction endonuclease	NA	NA	NA	NA	NA
WP_011035386.1|4998068_4999283_+|transposase	IS4-like element IS1481A family transposase	transposase	A0A0F7LAS3	uncultured_marine_virus	31.5	2.7e-50
WP_011039254.1|4999654_5000674_+	ParA family protein	NA	Q7M293	Enterobacteria_phage	27.5	1.2e-19
WP_011035783.1|5001344_5002712_-|transposase	IS5-like element IS1478 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	63.6	2.8e-80
WP_011039255.1|5003302_5004652_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
WP_011039256.1|5004666_5005224_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011039257.1|5005488_5005821_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011039258.1|5006353_5006644_-	HigA family addiction module antidote protein	NA	A0A0M3LPV0	Mannheimia_phage	37.5	3.1e-05
WP_011039259.1|5006812_5009050_-	exodeoxyribonuclease V subunit alpha	NA	A0A0K2FLP8	Brevibacillus_phage	21.5	1.9e-09
WP_011039260.1|5009046_5013165_-	exodeoxyribonuclease V subunit beta	NA	S5MMD7	Bacillus_phage	21.6	3.9e-08
WP_011039261.1|5013161_5016566_-	exodeoxyribonuclease V subunit gamma	NA	NA	NA	NA	NA
WP_019237025.1|5016861_5022081_-	putative Ig domain-containing protein	NA	A0A160DDD4	Gordonia_phage	50.0	2.8e-11
WP_011039263.1|5022337_5022883_+|tail	phage tail protein	tail	A0A222ZFV4	Arthrobacter_phage	32.8	2.5e-11
WP_011039264.1|5022957_5023485_+|tail	phage tail protein	tail	C4MYW8	Escherichia_phage	48.1	2.6e-05
WP_011039265.1|5023545_5024085_+|tail	phage tail protein	tail	A0A0U4K7C7	Arthrobacter_phage	33.3	9.0e-14
