The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_002488	Xylella fastidiosa 9a5c, complete sequence	2679306	453711	509918	2679306	tRNA,protease,integrase,terminase,portal	Stenotrophomonas_phage(17.65%)	59	482917:482932	501500:501515
WP_010892974.1|453711_455406_+|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010892975.1|455555_455930_+	H-NS histone family protein	NA	NA	NA	NA	NA
WP_010892976.1|456268_456469_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004083585.1|457037_457388_+	DMT family protein	NA	NA	NA	NA	NA
WP_031336286.1|457971_458358_-	twitching motility response regulator PilH	NA	B5LWA6	Feldmannia_species_virus	29.6	9.6e-10
WP_031336287.1|458450_459455_-	oxidoreductase	NA	NA	NA	NA	NA
WP_010892980.1|459601_460741_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010892981.1|460737_461601_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_031336290.1|461760_461946_+	DUF2065 family protein	NA	NA	NA	NA	NA
WP_031336291.1|462138_463431_+	adenylosuccinate synthase	NA	W5S5V7	Pithovirus	37.7	4.9e-74
WP_010892985.1|463947_464952_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010892986.1|466481_466907_+	nucleoside-diphosphate kinase	NA	A0A167REB2	Powai_lake_megavirus	40.2	1.3e-18
WP_042463544.1|466932_468138_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_023906157.1|468124_468934_+	type IV pilus biogenesis/stability protein PilW	NA	NA	NA	NA	NA
WP_020851188.1|469886_470525_+	YfgM family protein	NA	NA	NA	NA	NA
WP_031336297.1|470525_471761_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010892993.1|471786_473184_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010892994.1|473416_474556_-	molybdopterin-synthase adenylyltransferase MoeB	NA	A0A1V0SIK8	Klosneuvirus	28.0	6.8e-11
WP_010892998.1|475479_477048_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010893000.1|477565_478915_+	LOG family protein YgdH	NA	NA	NA	NA	NA
WP_010893001.1|479060_479573_+	GspH/FimT family pseudopilin	NA	NA	NA	NA	NA
WP_031337553.1|479569_480052_+	type IV pilus modification protein PilV	NA	NA	NA	NA	NA
WP_023906163.1|480048_481305_+	PilW family protein	NA	NA	NA	NA	NA
WP_010893004.1|481304_481799_+	fimbrial protein	NA	NA	NA	NA	NA
WP_031337555.1|481802_486368_+	pilus assembly protein	NA	NA	NA	NA	NA
482917:482932	attL	GCTGTGGGTGGATCGC	NA	NA	NA	NA
WP_031337557.1|486364_486820_+	type IV pilin protein	NA	NA	NA	NA	NA
WP_010893008.1|487056_488229_-|integrase	integrase	integrase	V9IQN0	Stenotrophomonas_phage	53.2	2.5e-117
WP_010893009.1|488228_488501_-	hypothetical protein	NA	V9IQX6	Stenotrophomonas_phage	51.7	1.7e-08
WP_010893010.1|488522_488969_-	single-stranded DNA-binding protein	NA	L7TJL2	Pseudomonas_virus	51.0	6.1e-32
WP_080507227.1|488952_489378_-	DUF5131 family protein	NA	NA	NA	NA	NA
WP_010893012.1|489415_489622_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010893013.1|489618_490164_-	hypothetical protein	NA	Q5QF30	Pseudomonas_virus	36.3	7.2e-27
WP_042462740.1|490160_490754_-	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_080507182.1|490846_491383_-	pilin	NA	NA	NA	NA	NA
WP_155114980.1|491382_491523_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010893016.1|491515_491782_-	hypothetical protein	NA	NA	NA	NA	NA
WP_042462748.1|491778_492057_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023907291.1|492053_492275_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010893018.1|492271_492721_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010893019.1|492717_493182_-	DUF1566 domain-containing protein	NA	NA	NA	NA	NA
WP_010893020.1|493178_493574_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010893021.1|493570_493969_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010893023.1|494468_494771_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042463557.1|495074_496232_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
WP_010893025.1|496231_496699_+	DUF4411 family protein	NA	NA	NA	NA	NA
WP_042463560.1|497038_497491_-	hypothetical protein	NA	C7BGF7	Burkholderia_phage	47.1	7.8e-11
WP_010893028.1|497605_498037_-	transcriptional regulator	NA	A0A2D1GNH0	Pseudomonas_phage	57.4	3.8e-15
WP_042462755.1|498113_498410_+	transcriptional regulator	NA	D0UIL8	Aggregatibacter_phage	57.1	1.9e-13
WP_042462759.1|498396_498747_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042462762.1|498804_499428_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042462765.1|499529_499913_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010893033.1|499911_500964_+	hypothetical protein	NA	A0A1S5RF89	Helicobacter_phage	40.5	1.3e-11
WP_010893034.1|500963_502430_+	virulence factor	NA	A0A2D1GN57	Marinobacter_phage	33.3	1.3e-59
501500:501515	attR	GCTGTGGGTGGATCGC	NA	NA	NA	NA
WP_042462768.1|502826_503435_+	hypothetical protein	NA	A0A2I7S8M0	Vibrio_phage	40.7	8.6e-05
WP_010893036.1|503431_505531_+|terminase	phage terminase large subunit family protein	terminase	A0A1B2LRQ2	Wolbachia_phage	30.6	6.1e-74
WP_042462770.1|505607_505820_+|terminase	phage terminase large subunit family protein	terminase	NA	NA	NA	NA
WP_010893037.1|505816_506053_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010893038.1|506049_507612_+|portal	phage portal protein	portal	K7PHM5	Enterobacterial_phage	39.0	5.9e-90
WP_042462775.1|507608_509918_+|protease	Clp protease ClpP	protease	B7SYD7	Stenotrophomonas_phage	37.6	3.3e-81
>prophage 2
NC_002488	Xylella fastidiosa 9a5c, complete sequence	2679306	628437	735957	2679306	tRNA,holin,terminase,portal,capsid,plate,tail	Xylella_phage(31.91%)	114	NA	NA
WP_038200297.1|628437_629745_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
WP_010893184.1|629776_630043_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_010893185.1|630039_630915_+	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
WP_031336341.1|632114_632546_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010893189.1|632770_633022_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010893190.1|633031_633577_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010893191.1|633734_634160_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010893193.1|638189_640880_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010893194.1|641366_642320_+	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_010893195.1|642420_643164_+	3-oxoacyl-ACP reductase FabG	NA	NA	NA	NA	NA
WP_004083472.1|643328_643568_+	acyl carrier protein	NA	NA	NA	NA	NA
WP_010893197.1|643725_644961_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_010893198.1|645177_646536_+	aminodeoxychorismate synthase component I	NA	NA	NA	NA	NA
WP_010893199.1|646649_647702_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010893200.1|647731_648691_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_004083467.1|648690_649044_+	PilZ domain-containing protein	NA	NA	NA	NA	NA
WP_042463587.1|650130_650454_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010893203.1|650440_650677_-	hypothetical protein	NA	C8CLF6	Xylella_phage	60.8	6.1e-07
WP_010893204.1|650673_652092_-	DEAD/DEAH box helicase	NA	C8CLF7	Xylella_phage	94.5	3.3e-265
WP_042462867.1|652155_652584_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010893206.1|652585_652864_-	VRR-NUC domain-containing protein	NA	C8CLF9	Xylella_phage	94.5	1.6e-43
WP_010893207.1|652860_655041_-	DNA polymerase	NA	C8CLG0	Xylella_phage	91.9	0.0e+00
WP_010893208.1|655042_656554_-	hypothetical protein	NA	C8CLG1	Xylella_phage	66.4	7.0e-173
WP_010893209.1|656626_657193_-	DUF2815 family protein	NA	C8CLG2	Xylella_phage	96.8	4.1e-102
WP_010893210.1|657192_658470_-	DUF2800 domain-containing protein	NA	C8CLG3	Xylella_phage	83.5	7.2e-203
WP_155114982.1|658466_658964_-	hypothetical protein	NA	C8CLG4	Xylella_phage	76.1	2.4e-37
WP_010893212.1|658963_659155_-	hypothetical protein	NA	C8CLG5	Xylella_phage	69.5	1.0e-12
WP_010893213.1|659151_659424_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010893214.1|659455_659650_-	hypothetical protein	NA	C8CLG6	Xylella_phage	78.1	7.9e-21
WP_010893215.1|659646_660048_-	hypothetical protein	NA	C8CLG7	Xylella_phage	65.4	1.7e-41
WP_010893216.1|660047_660437_-	hypothetical protein	NA	C8CLG8	Xylella_phage	80.4	4.8e-17
WP_010893217.1|660433_660991_-	hypothetical protein	NA	C8CLG9	Xylella_phage	38.0	2.1e-10
WP_155114983.1|661337_661541_+	hypothetical protein	NA	NA	NA	NA	NA
WP_155114984.1|661715_662453_-	helix-turn-helix domain-containing protein	NA	E7C9R0	Salmonella_phage	33.2	2.1e-21
WP_010893221.1|662445_662670_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010893222.1|662843_663065_-	hypothetical protein	NA	NA	NA	NA	NA
WP_042462876.1|663046_663334_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023907741.1|663375_663681_-	hypothetical protein	NA	NA	NA	NA	NA
WP_042462880.1|663808_663997_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010893226.1|663993_664242_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042462883.1|664302_664566_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080507192.1|664594_664861_+	hypothetical protein	NA	C8CLH4	Xylella_phage	83.9	1.3e-34
WP_010893228.1|664857_665490_+	Bro-N domain-containing protein	NA	A4PE61	Ralstonia_virus	43.2	1.9e-18
WP_042462886.1|665626_668161_+	DNA primase	NA	C8CLH6	Xylella_phage	72.4	0.0e+00
WP_010893230.1|668703_668901_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042463593.1|669093_669711_+	hypothetical protein	NA	V5YTF6	Pseudomonas_phage	50.0	2.4e-26
WP_010893231.1|669677_670172_+	lysozyme	NA	I2GUG4	Acinetobacter_phage	50.7	8.5e-27
WP_010893232.1|670182_670494_+|holin	phage holin family protein	holin	A0A172PZR6	Pseudomonas_phage	43.0	2.0e-18
WP_042462889.1|670483_670945_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042462892.1|670946_671171_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042462895.1|671343_671883_+|terminase	terminase small subunit	terminase	A0A193GYK5	Enterobacter_phage	61.3	1.1e-46
WP_042462898.1|671875_673828_+|terminase	phage terminase large subunit family protein	terminase	D5LH04	Escherichia_phage	66.6	1.7e-251
WP_010893236.1|673831_674380_+	hypothetical protein	NA	V5YTG8	Pseudomonas_phage	50.0	1.4e-38
WP_010893237.1|674376_675975_+|portal	phage portal protein	portal	A0A088FVG5	Escherichia_phage	51.3	3.5e-130
WP_010893238.1|675958_677839_+|capsid	phage major capsid protein	capsid	V5YSS9	Pseudomonas_phage	48.9	2.1e-166
WP_010893239.1|677856_678117_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042462902.1|678116_678440_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010893241.1|678436_678958_+	hypothetical protein	NA	D5LGZ7	Escherichia_phage	33.9	2.8e-12
WP_042462905.1|678933_679476_+	hypothetical protein	NA	D5LGZ6	Escherichia_phage	42.9	5.8e-37
WP_010893243.1|679472_680060_+|plate	phage baseplate assembly protein V	plate	NA	NA	NA	NA
WP_010893244.1|680064_680340_-	HigA family addiction module antidote protein	NA	NA	NA	NA	NA
WP_042463596.1|680350_680632_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A0M3LQB1	Mannheimia_phage	46.2	1.2e-14
WP_042462908.1|680839_681178_+	GPW/gp25 family protein	NA	A0A088FV58	Escherichia_phage	59.5	2.3e-31
WP_010893248.1|681177_682071_+|plate	baseplate J/gp47 family protein	plate	V9IQV9	Stenotrophomonas_phage	45.8	2.8e-68
WP_010893249.1|682063_682621_+|tail	phage tail protein I	tail	V9IQK7	Stenotrophomonas_phage	55.6	3.0e-52
WP_042462912.1|684284_685463_+|tail	phage tail sheath family protein	tail	A0A088FVH5	Escherichia_phage	56.1	2.0e-138
WP_010893252.1|685462_685972_+|tail	phage major tail tube protein	tail	A0A088FRU2	Escherichia_phage	52.7	2.0e-47
WP_010893253.1|685974_686262_+|tail	phage tail assembly protein	tail	A0A193GYZ8	Enterobacter_phage	43.4	9.0e-13
WP_010893254.1|686388_688608_+|tail	phage tail tape measure protein	tail	V5YUN9	Pseudomonas_phage	48.5	7.8e-112
WP_010893255.1|688604_689087_+|tail	phage tail protein	tail	A0A193GYE0	Enterobacter_phage	46.0	1.3e-27
WP_010893256.1|689083_689302_+|tail	tail protein X	tail	NA	NA	NA	NA
WP_010893257.1|689292_690375_+	phage late control D family protein	NA	A0A088FRU7	Escherichia_phage	47.8	5.7e-92
WP_010893260.1|691466_693374_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	37.5	1.3e-126
WP_075584689.1|693441_693969_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	32.7	6.3e-12
WP_004090402.1|694229_694427_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010893263.1|694437_694797_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_031338050.1|695074_696070_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2K9L3A8	Tupanvirus	35.5	2.2e-29
WP_010893265.1|696153_698532_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010893266.1|698555_698855_+	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	40.4	3.6e-12
WP_031337099.1|698835_699192_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_080507228.1|700139_700739_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010893271.1|700886_701942_+	23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM	NA	NA	NA	NA	NA
WP_010893272.1|702727_703132_-	H-NS histone family protein	NA	NA	NA	NA	NA
WP_010893274.1|703410_704499_-	ribonuclease D	NA	NA	NA	NA	NA
WP_038200859.1|704621_706424_+	formylglycine-generating enzyme family protein	NA	A0A075BSL8	Microcystis_phage	34.4	1.2e-25
WP_010893277.1|706549_707407_+	virulence factor family protein	NA	NA	NA	NA	NA
WP_010893278.1|707472_708807_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	34.5	2.5e-36
WP_010893280.1|709256_710747_+	bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_010893281.1|710743_711232_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010893282.1|711290_712910_+	N-acetylmuramoyl-L-alanine amidase	NA	Q0H257	Geobacillus_phage	27.6	1.0e-12
WP_010893283.1|713045_714905_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	35.6	4.0e-85
WP_023906990.1|714904_715867_+	DUF1684 domain-containing protein	NA	NA	NA	NA	NA
WP_010893285.1|716135_716711_-	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	67.7	2.8e-69
WP_031338049.1|717283_718069_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010893288.1|718065_718506_-	YeeE/YedE family protein	NA	NA	NA	NA	NA
WP_010893289.1|718502_718910_-	YeeE/YedE family protein	NA	NA	NA	NA	NA
WP_010893290.1|718906_719251_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010893291.1|719244_720540_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_042462926.1|720965_721946_-	pteridine-dependent deoxygenase	NA	NA	NA	NA	NA
WP_010893294.1|722309_722579_+	acyl carrier protein	NA	NA	NA	NA	NA
WP_010893295.1|722553_723294_+	hypothetical protein	NA	NA	NA	NA	NA
WP_162009301.1|723333_723486_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010893297.1|723535_723823_+	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA	NA
WP_010893298.1|723819_724800_+	acyltransferase	NA	NA	NA	NA	NA
WP_080507193.1|724723_725371_+	fatty acyl CoA synthetase	NA	NA	NA	NA	NA
WP_010893299.1|725349_725574_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010893300.1|725566_727933_+	MMPL family transporter	NA	NA	NA	NA	NA
WP_031338048.1|727910_728345_+	phosphotransferase	NA	NA	NA	NA	NA
WP_023906984.1|728705_730949_-	acyltransferase	NA	A0A1R3Y5Q6	Salmonella_virus	37.2	1.8e-92
WP_023906983.1|730955_731462_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010893304.1|732247_734041_-	autotransporter domain-containing esterase	NA	NA	NA	NA	NA
WP_031338046.1|734182_734383_+	sulfur carrier protein ThiS	NA	NA	NA	NA	NA
WP_031337090.1|734431_735226_+	thiazole synthase	NA	NA	NA	NA	NA
WP_010893307.1|735222_735957_+|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
>prophage 3
NC_002488	Xylella fastidiosa 9a5c, complete sequence	2679306	1515382	1520428	2679306		Xylella_phage(28.57%)	9	NA	NA
WP_010894056.1|1515382_1515631_-	DUF4224 domain-containing protein	NA	C8CLF5	Xylella_phage	82.9	8.0e-34
WP_010894057.1|1515649_1515889_-	single-stranded DNA-binding protein	NA	NA	NA	NA	NA
WP_042463158.1|1516262_1517150_+	YdaU family protein	NA	A0A0P0I481	Acinetobacter_phage	42.7	4.5e-18
WP_042463161.1|1517130_1517820_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042463672.1|1517867_1518230_+	hypothetical protein	NA	A0A088F6Y8	Sulfitobacter_phage	43.0	2.8e-11
WP_042463164.1|1518249_1518948_+	hypothetical protein	NA	C8CLH7	Xylella_phage	82.6	1.8e-102
WP_010894061.1|1519135_1519402_+	BrnT family toxin	NA	K4NX81	Burkholderia_phage	40.7	8.1e-08
WP_004085696.1|1519388_1519727_+	BrnA antitoxin family protein	NA	K4NZP3	Burkholderia_phage	54.9	1.0e-07
WP_042463169.1|1519930_1520428_+	lysozyme	NA	A0A2I7S753	Vibrio_phage	51.7	2.3e-27
>prophage 4
NC_002488	Xylella fastidiosa 9a5c, complete sequence	2679306	1523485	1540790	2679306	head	Haemophilus_phage(41.18%)	26	NA	NA
WP_080507236.1|1523485_1524790_+	DUF1073 domain-containing protein	NA	H9C106	Vibrio_phage	37.6	6.9e-68
WP_004090283.1|1524838_1525120_-	XRE family transcriptional regulator	NA	A0A2D1GR59	Pseudomonas_phage	45.2	6.8e-13
WP_010894070.1|1525116_1525455_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_010894071.1|1525527_1526373_+|head	phage head morphogenesis protein	head	Q7Y5U5	Haemophilus_phage	33.1	2.7e-28
WP_042463176.1|1526372_1527563_+	DUF2213 domain-containing protein	NA	H9C194	Pectobacterium_phage	42.2	1.9e-40
WP_010894073.1|1527590_1528073_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010894074.1|1528082_1529066_+	DUF2184 domain-containing protein	NA	A0A2R3UA82	Siphoviridae_environmental_samples	39.3	9.9e-51
WP_010894075.1|1529129_1529429_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010894076.1|1529431_1529806_+	DUF4054 domain-containing protein	NA	Q7Y5T9	Haemophilus_phage	39.1	1.2e-12
WP_010894077.1|1529802_1530276_+	hypothetical protein	NA	M4SN98	Psychrobacter_phage	25.3	6.7e-05
WP_010894078.1|1530256_1530637_+	hypothetical protein	NA	Q776V7	Haemophilus_phage	36.5	2.3e-16
WP_010894079.1|1530623_1531094_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010894080.1|1531094_1532591_+	DUF3383 domain-containing protein	NA	Q7Y5T5	Haemophilus_phage	48.0	7.3e-122
WP_010894081.1|1532600_1533038_+	DUF3277 family protein	NA	Q7Y5T4	Haemophilus_phage	62.4	2.3e-44
WP_010894082.1|1533034_1533457_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010894084.1|1533604_1535494_+	hypothetical protein	NA	D0UII2	Aggregatibacter_phage	27.7	1.2e-23
WP_042463681.1|1535820_1536069_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010894086.1|1536444_1536873_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
WP_042463183.1|1536873_1537128_-	plasmid stabilization protein	NA	NA	NA	NA	NA
WP_010894088.1|1537239_1538010_+	hypothetical protein	NA	Q7Y5T0	Haemophilus_phage	33.7	6.4e-29
WP_010894089.1|1538009_1538327_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010894090.1|1538323_1539154_+	hypothetical protein	NA	D0UIH8	Aggregatibacter_phage	52.6	1.4e-77
WP_010894091.1|1539150_1539792_+	hypothetical protein	NA	A0A0M5M1K7	Salmonella_phage	38.5	4.6e-33
WP_010894092.1|1539788_1540142_+	hypothetical protein	NA	Q7Y5S5	Haemophilus_phage	47.0	2.4e-23
WP_004085592.1|1540197_1540491_-	putative addiction module antidote protein	NA	A4JWV1	Burkholderia_virus	37.9	6.2e-09
WP_010894094.1|1540493_1540790_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A141GEX6	Brucella_phage	53.7	3.4e-23
>prophage 5
NC_002488	Xylella fastidiosa 9a5c, complete sequence	2679306	1585979	1604794	2679306	integrase	Xylella_phage(35.29%)	31	1568477:1568491	1595063:1595077
1568477:1568491	attL	TTGTAGCGTGCTTTC	NA	NA	NA	NA
WP_010894137.1|1585979_1586999_-|integrase	tyrosine-type recombinase/integrase	integrase	C8CLF4	Xylella_phage	88.8	1.1e-169
WP_010894138.1|1586988_1587246_-	DUF4224 domain-containing protein	NA	C8CLF5	Xylella_phage	82.4	5.7e-35
WP_010894139.1|1587264_1587720_-	single-stranded DNA-binding protein	NA	L7TJL2	Pseudomonas_virus	49.7	2.4e-31
WP_010894140.1|1587789_1588422_-	Bro-N domain-containing protein	NA	B6SD63	Bacteriophage	38.2	6.2e-22
WP_162009303.1|1588733_1589498_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010894142.1|1589530_1591174_-	YqaJ viral recombinase family protein	NA	U6C712	Ralstonia_phage	37.6	3.8e-95
WP_010894143.1|1591170_1592097_-	phage recombination protein Bet	NA	U6C6J0	Ralstonia_phage	48.8	5.1e-57
WP_010894144.1|1592112_1592934_-	YfdQ family protein	NA	I3PUY7	Vibrio_phage	40.4	6.3e-43
WP_010894145.1|1592954_1593329_-	hypothetical protein	NA	U5P4J6	Shigella_phage	44.6	5.6e-15
WP_010894146.1|1593349_1593541_-	hypothetical protein	NA	C8CLG6	Xylella_phage	70.3	1.3e-15
WP_010894147.1|1593564_1593756_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010894148.1|1593752_1594154_-	hypothetical protein	NA	C8CLG7	Xylella_phage	78.2	3.3e-53
WP_010894149.1|1594153_1594612_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080507209.1|1594608_1595154_-	hypothetical protein	NA	NA	NA	NA	NA
1595063:1595077	attR	TTGTAGCGTGCTTTC	NA	NA	NA	NA
WP_010894151.1|1595545_1595734_+	antitoxin VbhA family protein	NA	NA	NA	NA	NA
WP_010894152.1|1595730_1596342_+	Fic family protein	NA	NA	NA	NA	NA
WP_042463200.1|1596392_1597067_-	helix-turn-helix transcriptional regulator	NA	A0A0M3LQ62	Mannheimia_phage	30.1	5.8e-18
WP_042463203.1|1597151_1597397_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042463205.1|1597393_1597699_-	hypothetical protein	NA	NA	NA	NA	NA
WP_042463208.1|1598078_1598267_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010894156.1|1598263_1598512_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042463212.1|1598508_1598892_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042463693.1|1599095_1600208_+	Bro-N domain-containing protein	NA	C8CLG1	Xylella_phage	59.5	2.1e-110
WP_023906549.1|1600204_1600513_+	DUF1376 domain-containing protein	NA	A0A0R6PKK6	Moraxella_phage	42.2	2.1e-15
WP_080507238.1|1600521_1601598_+	YdaU family protein	NA	A0A142K7R2	Mycobacterium_phage	60.5	2.7e-17
WP_042463161.1|1601578_1602268_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042463696.1|1602315_1602678_+	hypothetical protein	NA	A0A088F6Y8	Sulfitobacter_phage	43.9	4.3e-12
WP_042463215.1|1602697_1603396_+	hypothetical protein	NA	C8CLH7	Xylella_phage	78.3	1.6e-95
WP_080507210.1|1603448_1603703_+	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA	NA
WP_004085025.1|1603699_1604035_+	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA	NA
WP_042463169.1|1604296_1604794_+	lysozyme	NA	A0A2I7S753	Vibrio_phage	51.7	2.3e-27
>prophage 6
NC_002488	Xylella fastidiosa 9a5c, complete sequence	2679306	1607851	1630508	2679306	tail,plate,head	Haemophilus_phage(31.82%)	35	NA	NA
WP_080507236.1|1607851_1609156_+	DUF1073 domain-containing protein	NA	H9C106	Vibrio_phage	37.6	6.9e-68
WP_004090283.1|1609204_1609486_-	XRE family transcriptional regulator	NA	A0A2D1GR59	Pseudomonas_phage	45.2	6.8e-13
WP_010894070.1|1609482_1609821_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_010894071.1|1609893_1610739_+|head	phage head morphogenesis protein	head	Q7Y5U5	Haemophilus_phage	33.1	2.7e-28
WP_042463176.1|1610738_1611929_+	DUF2213 domain-containing protein	NA	H9C194	Pectobacterium_phage	42.2	1.9e-40
WP_010894073.1|1611956_1612439_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010894074.1|1612448_1613432_+	DUF2184 domain-containing protein	NA	A0A2R3UA82	Siphoviridae_environmental_samples	39.3	9.9e-51
WP_010894075.1|1613495_1613795_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010894076.1|1613797_1614172_+	DUF4054 domain-containing protein	NA	Q7Y5T9	Haemophilus_phage	39.1	1.2e-12
WP_010894077.1|1614168_1614642_+	hypothetical protein	NA	M4SN98	Psychrobacter_phage	25.3	6.7e-05
WP_010894078.1|1614622_1615003_+	hypothetical protein	NA	Q776V7	Haemophilus_phage	36.5	2.3e-16
WP_010894079.1|1614989_1615460_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010894080.1|1615460_1616957_+	DUF3383 domain-containing protein	NA	Q7Y5T5	Haemophilus_phage	48.0	7.3e-122
WP_010894081.1|1616966_1617404_+	DUF3277 family protein	NA	Q7Y5T4	Haemophilus_phage	62.4	2.3e-44
WP_010894082.1|1617400_1617823_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010894164.1|1617970_1619860_+	hypothetical protein	NA	D0UII2	Aggregatibacter_phage	28.0	6.8e-24
WP_088371569.1|1620189_1620366_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010894166.1|1620399_1620588_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010894167.1|1620592_1620763_-	antitoxin	NA	NA	NA	NA	NA
WP_042463219.1|1620815_1621091_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A1S5SB46	Streptococcus_phage	43.9	3.5e-14
WP_031336679.1|1621074_1621302_-	CopG family transcriptional regulator	NA	NA	NA	NA	NA
WP_010894169.1|1621412_1622183_+	hypothetical protein	NA	Q7Y5T0	Haemophilus_phage	33.3	3.7e-29
WP_010894170.1|1622182_1622500_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010894171.1|1622496_1623327_+	hypothetical protein	NA	D0UIH8	Aggregatibacter_phage	51.8	6.8e-77
WP_010894172.1|1623323_1623965_+	hypothetical protein	NA	A0A0M5M1K7	Salmonella_phage	38.1	1.3e-32
WP_010894173.1|1623961_1624315_+	hypothetical protein	NA	Q7Y5S5	Haemophilus_phage	47.8	2.8e-24
WP_004089254.1|1624325_1624631_-	putative addiction module antidote protein	NA	A4JWV1	Burkholderia_virus	43.6	1.1e-11
WP_042463224.1|1624627_1624930_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A141GEX6	Brucella_phage	58.1	3.4e-26
WP_042463227.1|1625028_1626174_+|plate	baseplate J/gp47 family protein	plate	D0UIH5	Aggregatibacter_phage	48.4	6.9e-96
WP_010894176.1|1626170_1626731_+	DUF2612 domain-containing protein	NA	D0UIH4	Aggregatibacter_phage	41.9	1.5e-32
WP_010894177.1|1626734_1627898_+|tail	tail fiber protein	tail	A4PE46	Ralstonia_virus	32.7	1.4e-08
WP_010894178.1|1627930_1628410_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010894179.1|1628443_1629559_-	HigA family addiction module antidote protein	NA	NA	NA	NA	NA
WP_010894180.1|1629574_1629865_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_010894181.1|1630175_1630508_+	DNA-binding transcriptional regulator	NA	A0A0P0IRJ4	Acinetobacter_phage	40.7	7.0e-17
>prophage 7
NC_002488	Xylella fastidiosa 9a5c, complete sequence	2679306	2006147	2014835	2679306	terminase,portal	Pseudomonas_phage(33.33%)	13	NA	NA
WP_031336505.1|2006147_2006480_-	DNA-binding transcriptional regulator	NA	A0A0P0IRJ4	Acinetobacter_phage	39.8	5.4e-17
WP_075584631.1|2006802_2007045_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023906406.1|2007057_2007309_+	glycine zipper family protein	NA	NA	NA	NA	NA
WP_023906405.1|2007403_2007703_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010894565.1|2007753_2008146_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010894567.1|2008481_2008994_-	hypothetical protein	NA	A0A0E3FDC5	Synechococcus_phage	47.5	4.5e-07
WP_010894568.1|2008986_2011812_-	hypothetical protein	NA	J9RWA5	Pseudomonas_phage	35.9	1.1e-70
WP_010894569.1|2011801_2012038_-	hypothetical protein	NA	A0A0A1IV01	Pseudomonas_phage	50.7	1.6e-12
WP_052262867.1|2012034_2012463_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023907545.1|2012589_2012880_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010894572.1|2013032_2013512_-|portal	phage portal protein	portal	K7PHM5	Enterobacterial_phage	32.8	5.2e-13
WP_042463315.1|2013508_2013745_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080507242.1|2013821_2014835_-|terminase	phage terminase large subunit family protein	terminase	A0A1B2LRQ2	Wolbachia_phage	28.3	9.6e-17
>prophage 8
NC_002488	Xylella fastidiosa 9a5c, complete sequence	2679306	2170953	2183135	2679306	tRNA,integrase	Xylella_phage(45.45%)	14	2158490:2158503	2193161:2193174
2158490:2158503	attL	CACCAAGACCACGC	NA	NA	NA	NA
WP_010894729.1|2170953_2171886_-	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	36.6	3.7e-15
WP_010894730.1|2171885_2172680_-	ParA family protein	NA	A0A0K2FLP4	Brevibacillus_phage	29.7	8.0e-19
WP_010894731.1|2172978_2173932_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010894734.1|2174737_2176018_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	51.2	6.5e-95
WP_010894735.1|2176139_2176835_+	energy transducer TonB	NA	NA	NA	NA	NA
WP_010894736.1|2177070_2178132_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	53.5	4.4e-97
WP_010894737.1|2178143_2178440_-	DUF4224 domain-containing protein	NA	A0A2H4JF29	uncultured_Caudovirales_phage	48.1	4.5e-07
WP_080507243.1|2178436_2178751_-	hypothetical protein	NA	C8CLF7	Xylella_phage	89.2	8.3e-28
WP_155114997.1|2178739_2179609_+	DNA polymerase	NA	C8CLG0	Xylella_phage	90.6	1.6e-129
WP_081089917.1|2179842_2180364_+	hypothetical protein	NA	C8CLG0	Xylella_phage	92.5	1.4e-91
WP_010893206.1|2180360_2180639_+	VRR-NUC domain-containing protein	NA	C8CLF9	Xylella_phage	94.5	1.6e-43
WP_010894740.1|2180640_2180949_-	hypothetical protein	NA	NA	NA	NA	NA
WP_052262871.1|2181048_2181726_+	KilA-N domain-containing protein	NA	A0A1W6JP13	Morganella_phage	42.9	3.6e-12
WP_010894742.1|2181722_2183135_+	DEAD/DEAH box helicase	NA	C8CLF7	Xylella_phage	93.2	1.3e-221
2193161:2193174	attR	GCGTGGTCTTGGTG	NA	NA	NA	NA
>prophage 9
NC_002488	Xylella fastidiosa 9a5c, complete sequence	2679306	2361084	2404268	2679306	integrase,terminase,holin,portal,plate,capsid,tail	Xylella_phage(45.95%)	59	2371517:2371531	2405206:2405220
WP_010894920.1|2361084_2361492_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_010894921.1|2361811_2362894_-	phage late control D family protein	NA	A0A088FRU7	Escherichia_phage	48.4	6.7e-93
WP_010893256.1|2362884_2363103_-|tail	tail protein X	tail	NA	NA	NA	NA
WP_010893255.1|2363099_2363582_-|tail	phage tail protein	tail	A0A193GYE0	Enterobacter_phage	46.0	1.3e-27
WP_010894922.1|2363578_2365798_-|tail	phage tail tape measure protein	tail	V5YUN9	Pseudomonas_phage	46.6	1.1e-108
WP_010894923.1|2365924_2366212_-|tail	phage tail assembly protein	tail	A0A193GYZ8	Enterobacter_phage	43.4	6.9e-13
WP_010893252.1|2366214_2366724_-|tail	phage major tail tube protein	tail	A0A088FRU2	Escherichia_phage	52.7	2.0e-47
WP_042462912.1|2366723_2367902_-|tail	phage tail sheath family protein	tail	A0A088FVH5	Escherichia_phage	56.1	2.0e-138
WP_010894924.1|2367966_2369559_-|tail	tail fiber domain-containing protein	tail	V9IQX0	Stenotrophomonas_phage	36.8	9.9e-85
WP_010893249.1|2369566_2370124_-|tail	phage tail protein I	tail	V9IQK7	Stenotrophomonas_phage	55.6	3.0e-52
WP_010893248.1|2370116_2371010_-|plate	baseplate J/gp47 family protein	plate	V9IQV9	Stenotrophomonas_phage	45.8	2.8e-68
WP_042462908.1|2371009_2371348_-	GPW/gp25 family protein	NA	A0A088FV58	Escherichia_phage	59.5	2.3e-31
2371517:2371531	attL	CTCAAAATTAACCTA	NA	NA	NA	NA
WP_010894925.1|2371565_2371868_+	type II toxin-antitoxin system MqsR family toxin	NA	NA	NA	NA	NA
WP_010894926.1|2371870_2372272_+	type II toxin-antitoxin system MqsA family antitoxin	NA	NA	NA	NA	NA
WP_010894927.1|2372340_2372928_-|plate	phage baseplate assembly protein V	plate	NA	NA	NA	NA
WP_010894928.1|2372924_2373467_-	hypothetical protein	NA	D5LGZ6	Escherichia_phage	42.9	2.0e-37
WP_010893241.1|2373442_2373964_-	hypothetical protein	NA	D5LGZ7	Escherichia_phage	33.9	2.8e-12
WP_042462902.1|2373960_2374284_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010893239.1|2374283_2374544_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010893238.1|2374561_2376442_-|capsid	phage major capsid protein	capsid	V5YSS9	Pseudomonas_phage	48.9	2.1e-166
WP_010893237.1|2376425_2378024_-|portal	phage portal protein	portal	A0A088FVG5	Escherichia_phage	51.3	3.5e-130
WP_010893236.1|2378020_2378569_-	hypothetical protein	NA	V5YTG8	Pseudomonas_phage	50.0	1.4e-38
WP_042462898.1|2378572_2380525_-|terminase	phage terminase large subunit family protein	terminase	D5LH04	Escherichia_phage	66.6	1.7e-251
WP_042462895.1|2380517_2381057_-|terminase	terminase small subunit	terminase	A0A193GYK5	Enterobacter_phage	61.3	1.1e-46
WP_042462892.1|2381229_2381454_-	hypothetical protein	NA	NA	NA	NA	NA
WP_042462889.1|2381455_2381917_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010893232.1|2381906_2382218_-|holin	phage holin family protein	holin	A0A172PZR6	Pseudomonas_phage	43.0	2.0e-18
WP_010893231.1|2382228_2382723_-	lysozyme	NA	I2GUG4	Acinetobacter_phage	50.7	8.5e-27
WP_042463593.1|2382689_2383307_-	hypothetical protein	NA	V5YTF6	Pseudomonas_phage	50.0	2.4e-26
WP_042463422.1|2383797_2386329_-	DNA primase	NA	C8CLH6	Xylella_phage	72.0	0.0e+00
WP_010894930.1|2386431_2387250_-	Bro-N domain-containing protein	NA	C8CLH5	Xylella_phage	59.7	5.7e-28
WP_155115001.1|2387748_2387910_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023907050.1|2388037_2388283_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010894932.1|2388343_2388592_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010894933.1|2388588_2388777_-	hypothetical protein	NA	NA	NA	NA	NA
WP_051372715.1|2388830_2389055_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023907048.1|2389156_2389462_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031338060.1|2389458_2389659_-	Rha family transcriptional regulator	NA	NA	NA	NA	NA
WP_010894935.1|2389732_2390503_+	helix-turn-helix transcriptional regulator	NA	C8CLH0	Xylella_phage	34.5	6.0e-27
WP_010894936.1|2390671_2391211_+	hypothetical protein	NA	NA	NA	NA	NA
WP_052262873.1|2391247_2391559_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010894938.1|2391746_2392202_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010894939.1|2392307_2392697_+	hypothetical protein	NA	C8CLG9	Xylella_phage	37.5	1.0e-06
WP_010894940.1|2392693_2393095_+	hypothetical protein	NA	C8CLG8	Xylella_phage	70.0	3.7e-12
WP_042463427.1|2393154_2393637_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023907733.1|2393936_2394128_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010894942.1|2394151_2394343_+	hypothetical protein	NA	C8CLG6	Xylella_phage	75.0	3.1e-17
WP_010894943.1|2394374_2394572_+	hypothetical protein	NA	C8CLG5	Xylella_phage	90.5	2.3e-23
WP_042463433.1|2394623_2395067_+	hypothetical protein	NA	C8CLG4	Xylella_phage	78.6	1.6e-32
WP_010894945.1|2395063_2396341_+	DUF2800 domain-containing protein	NA	C8CLG3	Xylella_phage	84.2	2.6e-205
WP_010894946.1|2396340_2396907_+	DUF2815 family protein	NA	C8CLG2	Xylella_phage	96.3	2.7e-101
WP_010894947.1|2396975_2398490_+	hypothetical protein	NA	C8CLG1	Xylella_phage	68.0	9.2e-181
WP_010894948.1|2398491_2400672_+	DNA polymerase	NA	C8CLG0	Xylella_phage	91.2	0.0e+00
WP_010893206.1|2400668_2400947_+	VRR-NUC domain-containing protein	NA	C8CLF9	Xylella_phage	94.5	1.6e-43
WP_010894949.1|2400948_2401344_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010894950.1|2401428_2402847_+	DEAD/DEAH box helicase	NA	C8CLF7	Xylella_phage	92.4	5.4e-260
WP_010894951.1|2402843_2403008_+	hypothetical protein	NA	C8CLF6	Xylella_phage	84.9	5.9e-17
WP_023907056.1|2403000_2403249_+	DUF4224 domain-containing protein	NA	C8CLF5	Xylella_phage	80.5	3.0e-33
WP_010894952.1|2403248_2404268_+|integrase	tyrosine-type recombinase/integrase	integrase	C8CLF4	Xylella_phage	87.6	1.1e-169
2405206:2405220	attR	CTCAAAATTAACCTA	NA	NA	NA	NA
