assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000006645.1_ASM664v1	NC_004088	Yersinia pestis KIM10+, complete sequence	1	328327-328439	1	CRISPRCasFinder	no		cas3,DEDDh,csa3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG	Orphan	CTTCACTCGGCTGCTCAAATGTGCTTT	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG	NA,NA	NA|444aa|up_9|NC_004088.1_312871_314203_-	PRK05201, hslU, ATP-dependent protease ATPase subunit HslU	NA|175aa|up_8|NC_004088.1_314273_314798_-	PRK05456, PRK05456, ATP-dependent protease subunit HslV	NA|282aa|up_7|NC_004088.1_314897_315743_-	PRK12757, PRK12757, cell division protein FtsN; Provisional	NA|343aa|up_6|NC_004088.1_315808_316837_-	PRK11041, PRK11041, DNA-binding transcriptional regulator CytR; Provisional	NA|733aa|up_5|NC_004088.1_317189_319388_-	PRK05580, PRK05580, primosome assembly protein PriA; Validated	NA|72aa|up_4|NC_004088.1_319630_319846_+	PRK00019, rpmE, 50S ribosomal protein L31; Reviewed	NA|152aa|up_3|NC_004088.1_320370_320826_-	COG4682, COG4682, Predicted membrane protein [Function unknown]	NA|106aa|up_2|NC_004088.1_321174_321492_-	PRK05264, PRK05264, met regulon transcriptional regulator MetJ	NA|812aa|up_1|NC_004088.1_323031_325467_+	PRK09466, metL, bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional	NA|295aa|up_0|NC_004088.1_325699_326584_+	PRK09432, metF, methylenetetrahydrofolate reductase	NA|879aa|down_0|NC_004088.1_328858_331495_-	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed	NA|388aa|down_1|NC_004088.1_331868_333032_-	PRK05111, PRK05111, acetylornithine deacetylase; Provisional	NA|335aa|down_2|NC_004088.1_333282_334287_+	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated	NA|259aa|down_3|NC_004088.1_334452_335229_+	cd04249, AAK_NAGK-NC, AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis	NA|458aa|down_4|NC_004088.1_335395_336769_+	PRK04833, PRK04833, argininosuccinate lyase; Provisional	NA|831aa|down_5|NC_004088.1_337367_339860_+	TIGR01785, Heme/hemopexin_utilization_protein_C, TonB-dependent heme/hemoglobin receptor family protein	NA|206aa|down_6|NC_004088.1_340081_340699_+	pfam06438, HasA, Heme-binding protein A (HasA)	NA|603aa|down_7|NC_004088.1_340864_342673_+	COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]	NA|443aa|down_8|NC_004088.1_342748_344077_+	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|268aa|down_9|NC_004088.1_344141_344945_+	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]
GCF_000006645.1_ASM664v1	NC_004088	Yersinia pestis KIM10+, complete sequence	2	1291480-1291750	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no		cas3,DEDDh,csa3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG	Orphan	GTTCACTGCCGCACAGGCAGCTTAGAAA,GTTCACTGCCGCACAGGCAGCTTAGAAA,GTTCACTGCCGCACAGGCAGCTTAGAAA	28,28,28	1	1	1291691-1291722	NC_004088.1_2439186-2439155	I-F:I-F:I-F	3,4,4	4	Orphan	cas3,DEDDh,csa3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG	NA|80aa|up_9|NC_004088.1_1276902_1277142_+,NA|84aa|up_8|NC_004088.1_1277180_1277432_+,NA	NA|80aa|up_9|NC_004088.1_1276902_1277142_+	NA	NA|84aa|up_8|NC_004088.1_1277180_1277432_+	NA	NA|191aa|up_7|NC_004088.1_1277455_1278028_+	TIGR03344, VI_effect_Hcp1, type VI secretion system effector, Hcp1 family	NA|134aa|up_6|NC_004088.1_1278039_1278441_-	pfam06836, DUF1240, Protein of unknown function (DUF1240)	NA|134aa|up_5|NC_004088.1_1278673_1279075_-	pfam06836, DUF1240, Protein of unknown function (DUF1240)	NA|82aa|up_4|NC_004088.1_1280596_1280842_+	pfam13693, HTH_35, Winged helix-turn-helix DNA-binding	NA|771aa|up_3|NC_004088.1_1281054_1283367_-	TIGR02073, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1C	NA|153aa|up_2|NC_004088.1_1283612_1284071_+	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|1993aa|up_1|NC_004088.1_1284185_1290164_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|183aa|up_0|NC_004088.1_1290570_1291119_-	COG3477, COG3477, Predicted periplasmic/secreted protein [Function unknown]	NA|285aa|down_0|NC_004088.1_1291753_1292608_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|509aa|down_1|NC_004088.1_1292945_1294472_+	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2	NA|642aa|down_2|NC_004088.1_1294506_1296432_+	COG3962, COG3962, Acetolactate synthase [Amino acid transport and metabolism]	NA|310aa|down_3|NC_004088.1_1297818_1298748_+	cd19968, PBP1_ABC_IbpA-like, periplasmic sugar-binding protein IbpA of an ABC transporter and similar proteins	NA|516aa|down_4|NC_004088.1_1298796_1300344_+	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|343aa|down_5|NC_004088.1_1300355_1301384_+	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|378aa|down_6|NC_004088.1_1301407_1302541_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|657aa|down_7|NC_004088.1_1302572_1304543_+	pfam09863, DUF2090, Uncharacterized protein conserved in bacteria (DUF2090)	NA|353aa|down_8|NC_004088.1_1304557_1305616_+	TIGR04379, myo-inositol_catabolism_protein, myo-inosose-2 dehydratase	NA|272aa|down_9|NC_004088.1_1305625_1306441_+	COG3718, IolB, Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
GCF_000006645.1_ASM664v1	NC_004088	Yersinia pestis KIM10+, complete sequence	3	1902328-1902537	3,2,2	CRISPRCasFinder,PILER-CR,CRT	no	cas1,cas3f,cas8f,cas5f,cas7f,cas6f	cas3,DEDDh,csa3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG	Type I-F	TGTTCACTGCCGCACAGGCAGCTTAGAAAA,GTTCACTGCCGCACAGGCAGCTTAGAAAATC,GTTCACTGCCGCACAGGCAGCTTAGAAAA	30,31,29	0	0	NA	NA	I-F:I-F:I-F	3,2,3	3	TypeI-F	cas3,DEDDh,csa3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG	NA|372aa|up_2|NC_004088.1_1897705_1898821_+,NA|425aa|up_1|NC_004088.1_1898859_1900134_+,NA|70aa|down_9|NC_004088.1_1914588_1914798_+	NA|463aa|up_9|NC_004088.1_1889603_1890992_-	PRK15414, PRK15414, phosphomannomutase	NA|347aa|up_8|NC_004088.1_1891008_1892049_-	cd06279, PBP1_LacI-like, ligand-binding domain of an uncharacterized transcription regulator from Corynebacterium glutamicum and its close homologs from other bacteria	NA|429aa|up_7|NC_004088.1_1892320_1893607_+	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]	NA|292aa|up_6|NC_004088.1_1893715_1894591_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|275aa|up_5|NC_004088.1_1894591_1895416_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|352aa|up_4|NC_004088.1_1895562_1896618_+	cd18612, GH130_Lin0857-like, Glycoside hydrolase family 130 such as Listeria innocua beta-1,2-mannobiose phosphorylase	NA|313aa|up_3|NC_004088.1_1896644_1897583_+	pfam08950, DUF1861, Protein of unknown function (DUF1861)	NA|372aa|up_2|NC_004088.1_1897705_1898821_+	NA	NA|425aa|up_1|NC_004088.1_1898859_1900134_+	NA	NA|415aa|up_0|NC_004088.1_1900746_1901991_-	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]	cas1|327aa|down_0|NC_004088.1_1902895_1903876_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3f|1096aa|down_1|NC_004088.1_1903872_1907160_+	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2	cas8f|449aa|down_2|NC_004088.1_1907568_1908915_+	TIGR02564, conserved_hypothetical_protein, CRISPR type I-F/YPEST-associated protein Csy1	cas5f|317aa|down_3|NC_004088.1_1908911_1909862_+	cd09676, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2	cas7f|335aa|down_4|NC_004088.1_1909879_1910884_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|185aa|down_5|NC_004088.1_1910894_1911449_+	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	NA|340aa|down_6|NC_004088.1_1911526_1912546_-	cd19079, AKR_EcYajO-like, Escherichia coli YajO and similar proteins	NA|168aa|down_7|NC_004088.1_1912556_1913060_-	COG1795, COG1795, Formaldehyde-activating enzyme nesessary for methanogenesis [Energy    production and conversion]	NA|453aa|down_8|NC_004088.1_1913106_1914465_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|70aa|down_9|NC_004088.1_1914588_1914798_+	NA
GCF_000006645.1_ASM664v1	NC_004088	Yersinia pestis KIM10+, complete sequence	4	2875721-2875930	4,3,3	CRISPRCasFinder,CRT,PILER-CR	no	DEDDh	cas3,DEDDh,csa3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG	Unclear	TTTCTAAGCTGCCTGTGCGGCAGTGAAC,TTTCTAAGCTGCCTGTGCGGCAGTGAAC,AGGTTCACTGCCGCACAGGCAGCTTAGAAAAT	28,28,32	0	0	NA	NA	I-F:I-F:I-F	3,3,2	3	Orphan	cas3,DEDDh,csa3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG	NA,NA|16aa|down_7|NC_004088.1_2884218_2884266_+	NA|426aa|up_9|NC_004088.1_2861300_2862578_-	cd03324, rTSbeta_L-fuconate_dehydratase, Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA	NA|281aa|up_8|NC_004088.1_2862609_2863452_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|247aa|up_7|NC_004088.1_2863499_2864240_-	cd05368, DHRS6_like_SDR_c, human DHRS6-like, classical (c) SDRs	NA|141aa|up_6|NC_004088.1_2864648_2865071_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|435aa|up_5|NC_004088.1_2865079_2866384_-	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|1051aa|up_4|NC_004088.1_2867408_2870561_+	pfam11924, IAT_beta, Inverse autotransporter, beta-domain	NA|403aa|up_3|NC_004088.1_2870523_2871732_-	COG3328, COG3328, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|106aa|up_2|NC_004088.1_2872102_2872420_-	PRK05423, PRK05423, DUF496 family protein	NA|370aa|up_1|NC_004088.1_2872853_2873963_-	cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended (e) SDRs	DEDDh|477aa|up_0|NC_004088.1_2874255_2875686_+	PRK11779, sbcB, exonuclease I; Provisional	NA|464aa|down_0|NC_004088.1_2876422_2877814_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|364aa|down_1|NC_004088.1_2878272_2879364_-	PRK10586, PRK10586, putative oxidoreductase; Provisional	NA|298aa|down_2|NC_004088.1_2879649_2880543_+	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|230aa|down_3|NC_004088.1_2880500_2881190_+	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|332aa|down_4|NC_004088.1_2881186_2882182_+	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|97aa|down_5|NC_004088.1_2882570_2882861_+	pfam16695, Tai4, Type VI secretion system (T6SS), amidase immunity protein	NA|276aa|down_6|NC_004088.1_2883015_2883843_-	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4	NA|16aa|down_7|NC_004088.1_2884218_2884266_+	NA	NA|300aa|down_8|NC_004088.1_2884548_2885448_+	PRK00489, hisG, ATP phosphoribosyltransferase; Reviewed	NA|444aa|down_9|NC_004088.1_2885451_2886783_+	PRK00877, hisD, bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed
GCF_000006645.1_ASM664v1	NC_004088	Yersinia pestis KIM10+, complete sequence	5	3000867-3000988	5	CRISPRCasFinder	no		cas3,DEDDh,csa3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG	Orphan	CAATTGATTATATCGATTAATATTGGCATTAAG	33	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG	NA|73aa|up_0|NC_004088.1_3000291_3000510_-,NA	NA|83aa|up_9|NC_004088.1_2993167_2993416_-	PRK07117, PRK07117, acyl carrier protein; Validated	NA|147aa|up_8|NC_004088.1_2993453_2993894_-	pfam13924, Lipocalin_5, Lipocalin-like domain	NA|263aa|up_7|NC_004088.1_2993980_2994769_-	cd05233, SDR_c, classical (c) SDRs	NA|251aa|up_6|NC_004088.1_2994771_2995524_-	PRK07110, PRK07110, polyketide biosynthesis enoyl-CoA hydratase; Validated	NA|240aa|up_5|NC_004088.1_2995525_2996245_-	COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]	NA|413aa|up_4|NC_004088.1_2996237_2997476_-	COG3425, PksG, 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism]	NA|246aa|up_3|NC_004088.1_2997491_2998229_-	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs	NA|428aa|up_2|NC_004088.1_2998230_2999514_-	cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II	NA|175aa|up_1|NC_004088.1_2999503_3000028_-	COG0764, FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]	NA|73aa|up_0|NC_004088.1_3000291_3000510_-	NA	NA|249aa|down_0|NC_004088.1_3001240_3001987_+	PRK06172, PRK06172, SDR family oxidoreductase	NA|806aa|down_1|NC_004088.1_3002140_3004558_+	pfam01565, FAD_binding_4, FAD binding domain	NA|110aa|down_2|NC_004088.1_3008202_3008532_+	COG2920, DsrC, Dissimilatory sulfite reductase (desulfoviridin), gamma subunit [Inorganic ion transport and metabolism]	NA|93aa|down_3|NC_004088.1_3008583_3008862_-	PRK14426, PRK14426, acylphosphatase; Provisional	NA|397aa|down_4|NC_004088.1_3008955_3010146_+	PRK15128, PRK15128, 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA|106aa|down_5|NC_004088.1_3010206_3010524_+	PRK14129, PRK14129, heat shock protein HspQ; Provisional	NA|139aa|down_6|NC_004088.1_3010632_3011049_-	COG1832, COG1832, Predicted CoA-binding protein [General function prediction only]	NA|227aa|down_7|NC_004088.1_3011364_3012045_+	PRK03641, PRK03641, DUF2057 family protein	NA|155aa|down_8|NC_004088.1_3012223_3012688_+	PRK05234, mgsA, methylglyoxal synthase; Validated	NA|685aa|down_9|NC_004088.1_3012748_3014803_-	PRK11054, helD, DNA helicase IV; Provisional
GCF_000006645.1_ASM664v1	NC_004088	Yersinia pestis KIM10+, complete sequence	6	3917689-3917768	6	CRISPRCasFinder	no		cas3,DEDDh,csa3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG	Orphan	CAGCCGCAGCCACGCTCAGCCATTC	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG	NA,NA|152aa|down_4|NC_004088.1_3924426_3924882_-,NA|157aa|down_5|NC_004088.1_3924908_3925379_-,NA|77aa|down_7|NC_004088.1_3926902_3927133_-,NA|53aa|down_8|NC_004088.1_3927688_3927847_+	NA|94aa|up_9|NC_004088.1_3904964_3905246_+	COG2960, COG2960, Uncharacterized protein conserved in bacteria [Function unknown]	NA|417aa|up_8|NC_004088.1_3905570_3906821_-	PRK11021, PRK11021, putative transporter; Provisional	NA|477aa|up_7|NC_004088.1_3906857_3908288_-	PRK11316, PRK11316, bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE	NA|952aa|up_6|NC_004088.1_3908422_3911278_-	PRK11072, PRK11072, bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase	NA|390aa|up_5|NC_004088.1_3911586_3912756_-	COG3025, COG3025, Uncharacterized conserved protein [Function unknown]	NA|208aa|up_4|NC_004088.1_3913059_3913683_+	PRK10884, PRK10884, SH3 domain-containing protein; Provisional	NA|413aa|up_3|NC_004088.1_3913842_3915081_+	PRK10885, cca, multifunctional CCA addition/repair protein	NA|273aa|up_2|NC_004088.1_3915316_3916135_-	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase	NA|120aa|up_1|NC_004088.1_3916408_3916768_-	PRK11593, folB, bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase	NA|217aa|up_0|NC_004088.1_3916875_3917526_+	PRK00220, PRK00220, glycerol-3-phosphate 1-O-acyltransferase PlsY	NA|338aa|down_0|NC_004088.1_3917771_3918785_-	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	NA|72aa|down_1|NC_004088.1_3919190_3919406_+	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|583aa|down_2|NC_004088.1_3919541_3921290_+	PRK05667, dnaG, DNA primase; Validated	NA|613aa|down_3|NC_004088.1_3921447_3923286_+	PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated	NA|152aa|down_4|NC_004088.1_3924426_3924882_-	NA	NA|157aa|down_5|NC_004088.1_3924908_3925379_-	NA	NA|461aa|down_6|NC_004088.1_3925387_3926770_-	cd00085, HNHc, HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins	NA|77aa|down_7|NC_004088.1_3926902_3927133_-	NA	NA|53aa|down_8|NC_004088.1_3927688_3927847_+	NA	NA|311aa|down_9|NC_004088.1_3928805_3929738_-	cd08472, PBP2_CrgA_like_3, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold
