assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000005845.2_ASM584v2	NC_000913	Escherichia coli str. K-12 substr. MG1655, complete genome	1	411076-411220	1	CRISPRCasFinder	no		DEDDh,WYL,RT,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	ATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,RT,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|28aa|up_2|NC_000913.3_408946_409030_+,NA	NA|372aa|up_9|NC_000913.3_403702_404818_+	PRK10245, adrA, diguanylate cyclase AdrA; Provisional	NA|270aa|up_8|NC_000913.3_404834_405644_-	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|153aa|up_7|NC_000913.3_405763_406222_+	PRK00124, PRK00124, YaiI/YqxD family protein	NA|175aa|up_6|NC_000913.3_406404_406929_+	PRK03731, aroL, shikimate kinase AroL	NA|64aa|up_5|NC_000913.3_406978_407170_+	PRK10380, PRK10380, hypothetical protein; Provisional	NA|226aa|up_4|NC_000913.3_407427_408105_+	PRK10481, PRK10481, hypothetical protein; Provisional	NA|95aa|up_3|NC_000913.3_408176_408461_+	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|28aa|up_2|NC_000913.3_408946_409030_+	NA	NA|304aa|up_1|NC_000913.3_409107_410019_-	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|303aa|up_0|NC_000913.3_410143_411052_+	PRK09557, PRK09557, fructokinase; Reviewed	NA|395aa|down_0|NC_000913.3_411296_412481_-	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|1049aa|down_1|NC_000913.3_412606_415753_-	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|401aa|down_2|NC_000913.3_415749_416952_-	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|230aa|down_3|NC_000913.3_417141_417831_+	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|432aa|down_4|NC_000913.3_417888_419184_+	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|440aa|down_5|NC_000913.3_419590_420910_+	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|458aa|down_6|NC_000913.3_420985_422359_+	PRK10580, proY, putative proline-specific permease; Provisional	NA|605aa|down_7|NC_000913.3_422517_424332_+	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|194aa|down_8|NC_000913.3_424336_424918_-	PRK10045, PRK10045, ACP phosphodiesterase	NA|357aa|down_9|NC_000913.3_425010_426081_+	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
GCF_000005845.2_ASM584v2	NC_000913	Escherichia coli str. K-12 substr. MG1655, complete genome	2	551366-551462	2	CRISPRCasFinder	no		DEDDh,WYL,RT,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	GCTTGACGCGTCTTATCAGGCCTACAA	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,RT,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|454aa|up_9|NC_000913.3_539146_540508_+	PRK08044, PRK08044, allantoinase AllB	NA|434aa|up_8|NC_000913.3_540564_541866_+	PRK11412, PRK11412, uracil/xanthine transporter	NA|382aa|up_7|NC_000913.3_541887_543033_+	PRK09932, PRK09932, glycerate 3-kinase	NA|262aa|up_6|NC_000913.3_543260_544046_-	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|412aa|up_5|NC_000913.3_544056_545292_-	TIGR03176, AllC, allantoate amidohydrolase	NA|350aa|up_4|NC_000913.3_545313_546363_-	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|556aa|up_3|NC_000913.3_546679_548347_+	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|420aa|up_2|NC_000913.3_548356_549616_+	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|272aa|up_1|NC_000913.3_549626_550442_+	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|298aa|up_0|NC_000913.3_550438_551332_+	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|356aa|down_0|NC_000913.3_551526_552594_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|170aa|down_1|NC_000913.3_552590_553100_-	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|241aa|down_2|NC_000913.3_553217_553940_-	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|165aa|down_3|NC_000913.3_553942_554437_-	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|462aa|down_4|NC_000913.3_554610_555996_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|174aa|down_5|NC_000913.3_556031_556553_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|71aa|down_6|NC_000913.3_556660_556873_-	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|289aa|down_7|NC_000913.3_556874_557741_-	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|181aa|down_8|NC_000913.3_558211_558754_+	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|231aa|down_9|NC_000913.3_558973_559666_+	PRK15195, PRK15195, molecular chaperone FimC
GCF_000005845.2_ASM584v2	NC_000913	Escherichia coli str. K-12 substr. MG1655, complete genome	3	2347201-2347327	3	CRISPRCasFinder	no		DEDDh,WYL,RT,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC	39	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,RT,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|48aa|up_1|NC_000913.3_2344593_2344737_-,NA	NA|395aa|up_9|NC_000913.3_2326108_2327293_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|259aa|up_8|NC_000913.3_2327366_2328143_-	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|up_7|NC_000913.3_2328147_2329797_-	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|208aa|up_6|NC_000913.3_2334335_2334959_-	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|563aa|up_5|NC_000913.3_2334955_2336644_-	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|876aa|up_4|NC_000913.3_2336792_2339420_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|241aa|up_3|NC_000913.3_2339566_2340289_+	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|1251aa|up_2|NC_000913.3_2340416_2344169_-	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|48aa|up_1|NC_000913.3_2344593_2344737_-	NA	NA|762aa|up_0|NC_000913.3_2344864_2347150_+	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|377aa|down_0|NC_000913.3_2347383_2348514_+	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|85aa|down_1|NC_000913.3_2348513_2348768_+	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|217aa|down_2|NC_000913.3_2348821_2349472_-	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|359aa|down_3|NC_000913.3_2349934_2351011_-	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|453aa|down_4|NC_000913.3_2351015_2352374_-	PRK11273, glpT, glycerol-3-phosphate transporter	NA|543aa|down_5|NC_000913.3_2352646_2354275_+	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|420aa|down_6|NC_000913.3_2354264_2355524_+	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_7|NC_000913.3_2355520_2356711_+	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|300aa|down_8|NC_000913.3_2356903_2357803_+	PRK09956, PRK09956, ISNCY family transposase	NA|268aa|down_9|NC_000913.3_2358041_2358845_-	PRK10128, PRK10128, 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
GCF_000005845.2_ASM584v2	NC_000913	Escherichia coli str. K-12 substr. MG1655, complete genome	4	2877701-2878463	4,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,WYL,RT,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	12,12,9	12	TypeI-E	DEDDh,WYL,RT,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|254aa|up_9|NC_000913.3_2869512_2870274_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NC_000913.3_2870254_2871304_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NC_000913.3_2871300_2871780_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NC_000913.3_2871779_2872490_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NC_000913.3_2872508_2872820_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NC_000913.3_2873013_2873337_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NC_000913.3_2873386_2873992_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NC_000913.3_2873991_2875419_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NC_000913.3_2875420_2876329_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NC_000913.3_2876580_2877618_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|95aa|down_0|NC_000913.3_2878568_2878853_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|306aa|down_1|NC_000913.3_2878854_2879772_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|200aa|down_2|NC_000913.3_2879787_2880387_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|225aa|down_3|NC_000913.3_2880373_2881048_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|364aa|down_4|NC_000913.3_2881050_2882142_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|161aa|down_5|NC_000913.3_2882154_2882637_-	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|503aa|down_6|NC_000913.3_2882629_2884138_-	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cas3|889aa|down_7|NC_000913.3_2884552_2887219_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|245aa|down_8|NC_000913.3_2887577_2888312_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_9|NC_000913.3_2888386_2890099_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit
GCF_000005845.2_ASM584v2	NC_000913	Escherichia coli str. K-12 substr. MG1655, complete genome	5	2904014-2904407	2,5,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3	DEDDh,WYL,RT,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Unclear	GGTTTATCCCCGCTGGCGCGGGGAACAC,GGTTTATCCCCGCTGGCGCGGGGAACAC,GGTTTATCCCCGCTGGCGCGGGGAACAC	28,28,28	0	0	NA	NA	I-E:I-E:I-E	6,6,6	6	Unclear	DEDDh,WYL,RT,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA|47aa|down_1|NC_000913.3_2905556_2905697_+	NA|424aa|up_9|NC_000913.3_2892656_2893928_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NC_000913.3_2893918_2894179_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NC_000913.3_2894195_2894771_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NC_000913.3_2894918_2895779_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NC_000913.3_2895775_2896555_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|446aa|up_4|NC_000913.3_2896532_2897870_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NC_000913.3_2897963_2899418_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NC_000913.3_2899487_2900273_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NC_000913.3_2900591_2901869_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NC_000913.3_2901895_2903374_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NC_000913.3_2904746_2905418_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NC_000913.3_2905556_2905697_+	NA	NA|291aa|down_2|NC_000913.3_2905710_2906583_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|NC_000913.3_2906642_2907941_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NC_000913.3_2908028_2909666_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NC_000913.3_2909893_2910685_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NC_000913.3_2910755_2911091_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NC_000913.3_2911090_2911339_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|NC_000913.3_2911416_2913651_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|NC_000913.3_2913698_2915000_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
