The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR216067	Streptococcus pneumoniae isolate b04a6400-1f66-11e7-b93e-3c4a9275d6c8 genome assembly, chromosome: 1	2074160	1590	49295	2074160	transposase,bacteriocin,tRNA,protease	uncultured_virus(11.11%)	46	NA	NA
VFI50038.1|1590_2772_+|protease	trypsin-like serine protease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	26.1	1.5e-16
VFI50039.1|2844_3588_+	chromosome partitioning protein	NA	S5VSZ7	Leptospira_phage	36.1	1.2e-16
VFI50040.1|3800_5162_+	DNA biosynthesis, initiation, binding protein	NA	NA	NA	NA	NA
VFI50041.1|5320_6457_+	DNA polymerase III, beta subunit	NA	A0A0A8IL17	Aurantimonas_phage	24.4	1.6e-23
VFI50042.1|6521_6716_+	Bacterial protein of uncharacterised function (DUF951)	NA	NA	NA	NA	NA
VFI50043.1|6799_7915_+	GTP-dependent nucleic acid-binding protein EngD	NA	NA	NA	NA	NA
VFI50044.1|7985_8555_+|tRNA	peptidyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
VFI50045.1|8555_12065_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
VFI50046.1|12122_12389_+	S4 RNA-binding domain-containing protein	NA	NA	NA	NA	NA
VFI50047.1|12381_12750_+	cell division protein	NA	NA	NA	NA	NA
VFI50048.1|12754_12877_+	putative extracellular protein	NA	NA	NA	NA	NA
VFI50049.1|12869_14138_+	beta-lactamase	NA	NA	NA	NA	NA
VFI50050.1|14134_15412_+	MesJ/Ycf62 family protein	NA	A7K9Y8	Acanthocystis_turfacea_chlorella_virus	24.6	3.9e-07
VFI50051.1|15415_15958_+	hypoxanthine guanine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	28.9	4.7e-10
VFI50052.1|15973_17932_+	cell-division protein	NA	H8ZJI5	Ostreococcus_tauri_virus	45.8	3.2e-109
VFI50053.1|18010_18391_+|transposase	putative IS630-Spn1 transposase	transposase	NA	NA	NA	NA
VFI50054.1|19487_19724_+	recombination regulator RecX	NA	NA	NA	NA	NA
VFI50055.1|19912_21241_+	adenylosuccinate synthetase	NA	L7Y4J5	Megavirus	37.1	3.6e-72
VFI50056.1|21441_21909_+	cytidine/deoxycytidylate deaminase	NA	NA	NA	NA	NA
VFI50057.1|22095_22539_+	deoxyuridine 5'-triphosphate nucleotidohydrolase	NA	Q2WG49	Clostridium_botulinum_D_phage	47.3	2.1e-29
VFI50058.1|22498_23056_+	phosphoglycerate mutase family protein	NA	NA	NA	NA	NA
VFI50059.1|23168_24431_+	DNA repair protein	NA	NA	NA	NA	NA
VFI50060.1|24503_25001_+	carbonic anhydrase	NA	NA	NA	NA	NA
VFI50061.1|25255_25840_+	repair protein	NA	NA	NA	NA	NA
VFI50062.1|25984_26953_+	ribose-phosphate pyrophosphokinase	NA	A0A1V0SHF7	Hokovirus	34.7	4.0e-44
VFI50063.1|26888_27368_-|transposase	transposase-like protein	transposase	A0A1S5SBP9	Streptococcus_phage	88.2	9.7e-44
VFI50064.1|27494_27728_-	adenylosuccinate lyase	NA	NA	NA	NA	NA
VFI50065.1|28051_28309_-|transposase	nuclease family transposase	transposase	NA	NA	NA	NA
VFI50066.1|28621_31291_+	DNA polymerase I - 3'-5' exonuclease and polymerase domains	NA	A0A218MKQ4	uncultured_virus	30.1	1.0e-57
VFI50067.1|31375_31813_+	CoA-binding protein	NA	NA	NA	NA	NA
VFI50068.1|31853_32147_+	chlorohydrolase	NA	NA	NA	NA	NA
VFI50069.1|32175_33186_-	membrane protein	NA	NA	NA	NA	NA
VFI50070.1|33334_34504_+	aspartate aminotransferase	NA	NA	NA	NA	NA
VFI50071.1|34500_35271_+	DNA repair protein RecO	NA	NA	NA	NA	NA
VFI50072.1|35267_36260_+	fatty acid/phospholipid synthesis protein	NA	NA	NA	NA	NA
VFI50073.1|36265_36499_+	acyl carrier protein	NA	A0A2I7RIC8	Vibrio_phage	40.6	3.3e-05
VFI50074.1|36541_36835_+|transposase	transposase-like protein, IS1381 ISSpn7	transposase	NA	NA	NA	NA
VFI50075.1|37037_37268_+|bacteriocin	bacteriocin BlpO	bacteriocin	NA	NA	NA	NA
VFI50076.1|37270_37396_+|bacteriocin	bacteriocin BlpO	bacteriocin	NA	NA	NA	NA
VFI50077.1|37984_40138_+	competence factor transporting ATP-binding protein/permease ComA	NA	W8CYL7	Bacillus_phage	28.0	8.0e-45
VFI50078.1|40150_41500_+	competence factor transport protein ComB	NA	NA	NA	NA	NA
VFI50079.1|41669_42377_+	phosphoribosylaminoimidazole-succinocarboxamide synthetase	NA	A0A1D8KNF0	Synechococcus_phage	39.2	1.0e-41
VFI50080.1|42433_46159_+	phosphoribosylformylglycinamidine synthase II (FGAM synthetase)	NA	A6N228	Microbacterium_phage	25.7	9.6e-38
VFI50081.1|46251_47694_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	35.1	5.7e-55
VFI50082.1|47730_48753_+	phosphoribosylaminoimidazole synthetase	NA	A0A1D7SE90	Cyanophage	43.9	1.2e-64
VFI50083.1|48749_49295_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.0	7.4e-24
>prophage 2
LR216067	Streptococcus pneumoniae isolate b04a6400-1f66-11e7-b93e-3c4a9275d6c8 genome assembly, chromosome: 1	2074160	99882	190636	2074160	tRNA,integrase,bacteriocin,transposase,protease	Streptococcus_phage(40.91%)	100	180624:180648	193623:193647
VFI50134.1|99882_100170_+|bacteriocin	bacteriocin, putative	bacteriocin	NA	NA	NA	NA
VFI50135.1|100221_102330_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
VFI50136.1|102326_102968_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.8	4.3e-23
VFI50137.1|103198_103981_+	amino acid ABC transporter periplasmic amino acid-binding protein	NA	NA	NA	NA	NA
VFI50138.1|103997_105194_+	argininosuccinate synthase	NA	NA	NA	NA	NA
VFI50139.1|105217_106042_+	argininosuccinate lyase	NA	NA	NA	NA	NA
VFI50140.1|106330_107194_-	helix-turn-helix domain protein	NA	NA	NA	NA	NA
VFI50141.1|107659_109879_+	Bacteriocin ABC transoporter	NA	W8CYL7	Bacillus_phage	25.9	5.2e-39
VFI50142.1|109871_110339_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI50143.1|110335_111688_+	Secreted protein	NA	NA	NA	NA	NA
VFI50144.1|111833_112214_+	Membrane protein	NA	NA	NA	NA	NA
VFI50145.1|113461_113626_+	Membrane protein	NA	NA	NA	NA	NA
VFI50146.1|113793_114165_+	Membrane protein	NA	NA	NA	NA	NA
VFI50147.1|114172_114385_+	Membrane protein	NA	NA	NA	NA	NA
VFI50148.1|114757_114856_+|bacteriocin	putative bacteriocin	bacteriocin	NA	NA	NA	NA
VFI50149.1|115116_116175_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI50150.1|116489_117467_+	Leader peptidase	NA	NA	NA	NA	NA
VFI50151.1|117937_118312_+	Membrane protein	NA	NA	NA	NA	NA
VFI50152.1|118519_119422_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI50153.1|119477_119831_+	Membrane protein	NA	NA	NA	NA	NA
VFI50154.1|119827_120556_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI50155.1|121034_121232_+|bacteriocin	putative bacteriocin	bacteriocin	NA	NA	NA	NA
VFI50156.1|121913_122192_+	membrane associated protein	NA	M1Q0Z8	Streptococcus_phage	50.5	1.1e-20
VFI50157.1|122477_124358_+	Pneumococcal surface protein A	NA	NA	NA	NA	NA
VFI50158.1|124758_125880_+|tRNA	tRNA-specific 2-thiouridylase MnmA	tRNA	NA	NA	NA	NA
VFI50159.1|126020_126476_+	mutT/nudix family protein	NA	NA	NA	NA	NA
VFI50160.1|126485_128399_+|tRNA	tRNA uridine 5-carboxymethylaminomethyl modification protein GidA	tRNA	NA	NA	NA	NA
VFI50161.1|128777_130457_-	metallo-beta-lactamase superfamily protein 1	NA	NA	NA	NA	NA
VFI50162.1|130458_130692_-	transcriptional regulator	NA	NA	NA	NA	NA
VFI50163.1|130971_131295_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI50164.1|131507_131660_-|bacteriocin	bacteriocin-type signal sequence domain-containing protein	bacteriocin	NA	NA	NA	NA
VFI50165.1|131661_131847_-	excreted peptide	NA	NA	NA	NA	NA
VFI50166.1|132024_132708_+	molecular chaperone	NA	NA	NA	NA	NA
VFI50167.1|132704_133142_+	acetyltransferase	NA	NA	NA	NA	NA
VFI50168.1|133131_134142_+	O-sialoglycoprotein endopeptidase	NA	NA	NA	NA	NA
VFI50169.1|134181_134568_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	73.2	2.9e-46
VFI50170.1|134558_135488_-|transposase	IS1193, transposase, ISL3 family	transposase	A0A1S5SBP9	Streptococcus_phage	63.6	2.9e-92
VFI50171.1|136757_137300_+	glycosyl transferase, group 1 family protein	NA	NA	NA	NA	NA
VFI50172.1|137287_137962_+	group 1 family glycosyl transferase	NA	NA	NA	NA	NA
VFI50173.1|137954_138830_+	glycosyltransferase	NA	NA	NA	NA	NA
VFI50174.1|138916_140533_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	36.0	3.0e-28
VFI50175.1|140552_140708_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI50176.1|140899_141310_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI50177.1|141321_142071_+	N-acetylglucosaminylphosphatidylinositol deacetylase superfamily	NA	NA	NA	NA	NA
VFI50178.1|142083_143256_+	UDP-glucose 6-dehydrogenase	NA	O41091	Paramecium_bursaria_Chlorella_virus	43.5	6.6e-78
VFI50179.1|143650_144514_+	transcriptional regulator	NA	NA	NA	NA	NA
VFI50180.1|144804_145038_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI50181.1|145059_145737_+|protease	putative metal-dependent membrane protease	protease	NA	NA	NA	NA
VFI50182.1|145748_146414_+|protease	putative metal-dependent membrane protease	protease	NA	NA	NA	NA
VFI50183.1|146485_147712_+	transporter, major facilitator family protein	NA	NA	NA	NA	NA
VFI50184.1|147987_148185_-	chlorohydrolase	NA	NA	NA	NA	NA
VFI50185.1|148255_148912_+	branched-chain amino acid permease	NA	NA	NA	NA	NA
VFI50186.1|148901_149225_+	branched-chain amino acid transport protein	NA	NA	NA	NA	NA
VFI50187.1|149329_150160_+	ABC transporter substrate-binding lipoprotein	NA	NA	NA	NA	NA
VFI50188.1|150313_151168_+	ABC transporter substrate-binding lipoprotein	NA	NA	NA	NA	NA
VFI50189.1|151267_152641_+	deacylase	NA	NA	NA	NA	NA
VFI50190.1|152633_153695_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.7	6.7e-29
VFI50191.1|153696_154389_+	ABC transporter permease	NA	NA	NA	NA	NA
VFI50192.1|154418_154988_-	permease	NA	NA	NA	NA	NA
VFI50193.1|155122_155737_+	putative integral membrane protein	NA	NA	NA	NA	NA
VFI50194.1|155702_157385_+	sensor histidine kinase	NA	NA	NA	NA	NA
VFI50195.1|157396_158683_+	response regulator	NA	NA	NA	NA	NA
VFI50196.1|158734_159268_+	major facilitator superfamily permease	NA	NA	NA	NA	NA
VFI50197.1|159345_159816_+	flavoprotein NrdI	NA	NA	NA	NA	NA
VFI50198.1|160108_161371_-	Nramp family metal ion transporter	NA	NA	NA	NA	NA
VFI50199.1|161680_162139_-	integral membrane protein	NA	NA	NA	NA	NA
VFI50200.1|162135_162576_-	response regulator	NA	NA	NA	NA	NA
VFI50201.1|163008_163875_+	transcriptional regulator	NA	NA	NA	NA	NA
VFI50202.1|164027_164156_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI50203.1|164200_164758_+	flavoprotein	NA	A0A2H4X2C0	Flamingopox_virus	34.0	3.8e-15
VFI50204.1|164789_164879_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI50205.1|164978_166085_+	Pyridoxal dependent decarboxylase	NA	NA	NA	NA	NA
VFI50206.1|166060_167452_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI50207.1|167448_168627_+	Permease	NA	NA	NA	NA	NA
VFI50208.1|169567_171517_+	DNA mismatch repair protein hexB	NA	A0A1B2LRQ5	Wolbachia_phage	32.1	1.0e-70
VFI50209.1|171841_172309_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	52.0	4.1e-39
VFI50210.1|172309_173515_-	3,4-dihydroxy-2-butanone 4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	49.2	1.0e-105
VFI50211.1|173534_174170_-	riboflavin synthase subunit alpha	NA	A0A2H4PQS5	Staphylococcus_phage	46.9	1.3e-43
VFI50212.1|174154_175255_-	riboflavin biosynthesis protein RibD	NA	A0A1V0SE20	Indivirus	38.2	3.8e-51
VFI50213.1|175659_176253_+	holiday junction DNA helicase RuvA	NA	NA	NA	NA	NA
VFI50214.1|176262_176826_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
VFI50215.1|176822_177500_+|protease	caax amino protease family protein	protease	NA	NA	NA	NA
VFI50216.1|177654_178686_-	MccC family protein	NA	NA	NA	NA	NA
VFI50217.1|178940_179624_-	membrane protein	NA	NA	NA	NA	NA
VFI50218.1|179635_180580_-	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
180624:180648	attL	TATTATACTACAAAATCGGCCTTTT	NA	NA	NA	NA
VFI50219.1|180740_181907_-|integrase	prophage Sa05, site-specific recombinase phage integrase	integrase	A0A1X9I5Y5	Streptococcus_phage	69.8	3.3e-154
VFI50220.1|182139_183105_-	abortive infection phage resistance protein	NA	X2L062	Streptococcus_phage	43.8	1.3e-66
VFI50221.1|183339_183510_+|transposase	transposase-like protein, IS1239	transposase	NA	NA	NA	NA
VFI50222.1|183798_184314_-	XRE family transcriptional regulator	NA	A0A1X9I723	Streptococcus_phage	42.9	1.6e-20
VFI50223.1|184519_184720_+	transcriptional regulator	NA	NA	NA	NA	NA
VFI50224.1|184734_185121_+	phage protein	NA	A0A192Y918	Salmonella_phage	37.8	1.5e-10
VFI50225.1|185122_185311_+	phage protein	NA	NA	NA	NA	NA
VFI50226.1|185744_186197_+	phage protein	NA	NA	NA	NA	NA
VFI50227.1|186193_186394_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI50228.1|186395_186611_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI50229.1|186607_186949_+	phage protein	NA	NA	NA	NA	NA
VFI50230.1|186941_187217_+	phage protein	NA	A0A1X9I5U9	Streptococcus_phage	67.0	1.1e-28
VFI50231.1|187357_188224_+	phage protein	NA	A0A1X9I6L2	Streptococcus_phage	72.9	4.2e-122
VFI50232.1|188267_189743_+	phage replication protein	NA	Q9AZI5	Lactococcus_phage	36.9	1.3e-62
VFI50233.1|190105_190636_+	phage protein	NA	A0A1X9I5U4	Streptococcus_phage	48.1	7.4e-37
193623:193647	attR	TATTATACTACAAAATCGGCCTTTT	NA	NA	NA	NA
>prophage 3
LR216067	Streptococcus pneumoniae isolate b04a6400-1f66-11e7-b93e-3c4a9275d6c8 genome assembly, chromosome: 1	2074160	313822	409695	2074160	transposase,tRNA,protease,holin	Streptococcus_phage(17.65%)	91	NA	NA
VFI50362.1|313822_314038_+|transposase	truncated IS200 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	36.8	3.2e-07
VFI50363.1|314436_315066_-	keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase	NA	NA	NA	NA	NA
VFI50364.1|315075_316077_-	carbohydrate kinase, PfkB family	NA	NA	NA	NA	NA
VFI50365.1|316107_316749_-	galactose-6-phosphate isomerase subunit LacB	NA	NA	NA	NA	NA
VFI50366.1|316767_317583_-	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
VFI50367.1|317854_318289_+	PTS system sugar-specific transporter subunit EII	NA	NA	NA	NA	NA
VFI50368.1|318300_319491_+	glucuronyl hydrolase	NA	NA	NA	NA	NA
VFI50369.1|319501_319993_+	N-acetylgalactosamine-specific phosphotransferase EIIB	NA	NA	NA	NA	NA
VFI50370.1|320007_320787_+	PTS system, N-acetylgalactosamine-specific IIC component	NA	NA	NA	NA	NA
VFI50371.1|320773_321592_+	PTS system transporter subunit IID	NA	NA	NA	NA	NA
VFI50372.1|321591_321885_+	preprotein translocase subunit YajC	NA	NA	NA	NA	NA
VFI50373.1|321906_323808_+	oligohyaluronate lyase	NA	NA	NA	NA	NA
VFI50374.1|323867_324869_+	sugar binding transcriptional regulator RegR	NA	NA	NA	NA	NA
VFI50375.1|324978_325314_-	membrane protein	NA	NA	NA	NA	NA
VFI50376.1|325324_325567_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI50377.1|325577_326120_-	membrane protein	NA	NA	NA	NA	NA
VFI50378.1|326135_326330_-	transcriptional regulator	NA	I3VYZ1	Thermoanaerobacterium_phage	42.6	7.2e-06
VFI50379.1|326495_327446_+	S-adenosyl-methyltransferase mraW	NA	NA	NA	NA	NA
VFI50380.1|327457_327775_+	cell division protein FtsL	NA	NA	NA	NA	NA
VFI50381.1|327778_330031_+	penicillin-binding protein 2X	NA	NA	NA	NA	NA
VFI50382.1|330032_331013_+	UDP-phosphate-UDP-MurNAc-pentapeptide phospho-MurNAc-pentapeptide transferase	NA	NA	NA	NA	NA
VFI50383.1|331621_333727_+	Group II intron maturase	NA	H6X3M6	Enterobacteria_phage	37.2	3.8e-116
VFI50384.1|334022_334505_-	S-ribosylhomocysteinase	NA	NA	NA	NA	NA
VFI50385.1|334599_336084_-|protease	ATP-dependent Zn protease	protease	NA	NA	NA	NA
VFI50386.1|336236_337844_+	glucan 1,6-alpha-glucosidase	NA	NA	NA	NA	NA
VFI50387.1|338002_338176_+	lipoprotein, putative	NA	NA	NA	NA	NA
VFI50388.1|338168_338507_-|transposase	IS630-Spn1, transposase Orf2	transposase	NA	NA	NA	NA
VFI50389.1|338912_340358_+	capsular polysaccharide biosynthesis protein Cps14A	NA	A0A1X9I5X1	Streptococcus_phage	59.6	2.6e-132
VFI50390.1|340359_341091_+	tyrosine-protein phosphatase CpsB	NA	NA	NA	NA	NA
VFI50391.1|341099_341792_+	capsular polysaccharide biosynthesis protein Cap5A	NA	A0A1X9I5E1	Streptococcus_phage	56.8	1.8e-62
VFI50392.1|341801_342476_+	capsule biosynthesis tyrosine-protein kinase Wze	NA	A0A1X9I5D6	Streptococcus_phage	63.4	8.5e-78
VFI50393.1|342822_343422_+	capsular polysaccharide biosynthesis protein Cps4E	NA	NA	NA	NA	NA
VFI50394.1|343426_344653_+	capsular polysaccharide biosynthesis protein Cps4F	NA	NA	NA	NA	NA
VFI50395.1|344649_345819_+	glycosyltransferase	NA	NA	NA	NA	NA
VFI50396.1|345856_347068_+	Lipid A core - O-antigen ligase and related enzymes	NA	NA	NA	NA	NA
VFI50397.1|347042_348119_+	glycosyl transferase	NA	NA	NA	NA	NA
VFI50398.1|348120_349299_+	lipopolysaccharide 1,2-N-acetylglucosaminetransferase	NA	NA	NA	NA	NA
VFI50399.1|349340_350528_+	glycosyl transferase family protein	NA	NA	NA	NA	NA
VFI50400.1|350524_352069_+	exopolysaccharide biosynthesis protein, membrane protein	NA	NA	NA	NA	NA
VFI50401.1|352061_353285_+	UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase	NA	M1HNJ7	Paramecium_bursaria_Chlorella_virus	28.0	9.8e-24
VFI50402.1|353313_354411_+	UDP-N-acetylglucosamine-2-epimerase	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	30.5	5.7e-31
VFI50403.1|354414_355470_+	capsular polysaccharide biosynthesis protein Cps4J	NA	A0A1V0SAI8	Catovirus	33.0	2.6e-33
VFI50404.1|355569_356799_+	UDP-2-acetamido-2,6-dideoxy-b-L-lyxo-4-hexulose 4-reductase	NA	NA	NA	NA	NA
VFI50405.1|356799_357984_+	UDP-N-acetylglucosamine 2-epimerase	NA	A0A1V0SJE0	Klosneuvirus	51.3	1.2e-103
VFI50406.1|358346_358505_-|transposase	transposase	transposase	NA	NA	NA	NA
VFI50407.1|358575_359025_-|transposase	transposase	transposase	NA	NA	NA	NA
VFI50408.1|359394_359661_+|transposase	transposase family protein	transposase	NA	NA	NA	NA
VFI50409.1|359815_360139_-|transposase	IS66-Spn1 transposase	transposase	NA	NA	NA	NA
VFI50410.1|360119_360305_-	IS66 family Orf1	NA	NA	NA	NA	NA
VFI50411.1|360455_360698_+	mobile genetic element	NA	NA	NA	NA	NA
VFI50412.1|360708_361179_+	fusion of IS1381 orf A and B	NA	NA	NA	NA	NA
VFI50413.1|361442_363425_+	oligopeptide ABC transporter oligopeptide-binding protein AliA	NA	NA	NA	NA	NA
VFI50414.1|363725_369029_+	endo-alpha-N-acetylgalactosaminidase	NA	NA	NA	NA	NA
VFI50415.1|369195_371355_-	penicillin-binding protein 1A	NA	NA	NA	NA	NA
VFI50416.1|371351_371948_-	recombination protein U	NA	A0A1L2JY30	Aeribacillus_phage	33.9	8.7e-18
VFI50417.1|372013_372541_+	UPF0398 protein SSU05	NA	NA	NA	NA	NA
VFI50418.1|372610_372940_+	cell division initiation protein	NA	NA	NA	NA	NA
VFI50419.1|373425_374583_+	N-6 adenine-specific DNA methylase	NA	NA	NA	NA	NA
VFI50420.1|374595_375990_+	Holliday junction-specific endonuclease	NA	NA	NA	NA	NA
VFI50421.1|376065_377490_+|holin	choline binding protein J	holin	M4QQM4	Ostreococcus_lucimarinus_virus	29.6	1.6e-41
VFI50422.1|377501_378191_+|holin	choline binding protein J	holin	NA	NA	NA	NA
VFI50423.1|378288_379131_+|holin	choline-binding protein F	holin	NA	NA	NA	NA
VFI50424.1|379305_380184_+	mevalonate kinase	NA	NA	NA	NA	NA
VFI50426.1|380165_381119_+	diphosphomevalonate decarboxylase	NA	NA	NA	NA	NA
VFI50428.1|381105_382113_+	phosphomevalonate kinase	NA	NA	NA	NA	NA
VFI50430.1|382096_383107_+	isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2	NA	NA	NA	NA	NA
VFI50432.1|383184_383883_+	transporter	NA	NA	NA	NA	NA
VFI50434.1|383879_384875_+	histidine kinase	NA	NA	NA	NA	NA
VFI50436.1|384888_385521_+	response regulator	NA	NA	NA	NA	NA
VFI50438.1|386439_386679_+	V8-like Glu-specific endopeptidase	NA	NA	NA	NA	NA
VFI50440.1|386675_387581_+|holin	choline binding protein G	holin	NA	NA	NA	NA
VFI50442.1|387599_388025_+|holin	choline-binding protein F, point mutation	holin	NA	NA	NA	NA
VFI50444.1|388142_388499_+|holin	choline-binding protein F, point mutation	holin	NA	NA	NA	NA
VFI50446.1|388626_388812_-|transposase	transposase OrfB	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	50.0	6.0e-10
VFI50448.1|388759_389335_-|transposase	transposase-like protein, ISSpn1 ISSpn3	transposase	A0A1B1P773	Bacillus_phage	43.8	5.1e-31
VFI50450.1|389560_389830_-|transposase	degenerate transposase (Orf1)	transposase	NA	NA	NA	NA
VFI50452.1|389981_391751_+	PTS system mannitol-specific transporter subunit EIIBC	NA	NA	NA	NA	NA
VFI50454.1|391774_393730_+	putative transcriptional regulator MtlR	NA	NA	NA	NA	NA
VFI50456.1|393731_394169_+	mannitol-specific phosphotransferase EIIA	NA	NA	NA	NA	NA
VFI50458.1|394230_395367_+	mannitol-1-phosphate 5-dehydrogenase	NA	NA	NA	NA	NA
VFI50460.1|396152_397436_+	FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor)	NA	NA	NA	NA	NA
VFI50462.1|397483_399850_-	recombinase D	NA	A0A0K2FLP8	Brevibacillus_phage	27.2	9.0e-58
VFI50464.1|400083_400698_-	signal peptidase I	NA	NA	NA	NA	NA
VFI50466.1|400709_401582_-	ribonuclease HIII	NA	NA	NA	NA	NA
VFI50468.1|401668_401971_+|tRNA	seryl-tRNA synthetase	tRNA	NA	NA	NA	NA
VFI50470.1|401967_402516_+	CvpA family protein	NA	NA	NA	NA	NA
VFI50472.1|402619_404956_+	mismatch repair ATPase (MutS family)	NA	Q94M10	Lactobacillus_phage	55.1	1.3e-21
VFI50474.1|405298_406621_+	Na+/alanine symporter	NA	NA	NA	NA	NA
VFI50476.1|406838_407387_+	macrophage infectivity potentiator protein	NA	NA	NA	NA	NA
VFI50478.1|407496_408396_+	exfoliative toxin	NA	NA	NA	NA	NA
VFI50480.1|408420_409695_-|tRNA	seryl-tRNA synthetase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	48.5	4.3e-91
>prophage 4
LR216067	Streptococcus pneumoniae isolate b04a6400-1f66-11e7-b93e-3c4a9275d6c8 genome assembly, chromosome: 1	2074160	444919	547921	2074160	tRNA,integrase,bacteriocin,transposase,protease	Bacillus_phage(22.22%)	103	480020:480079	559012:559045
VFI50555.1|444919_445459_-|transposase	degenerate transposase	transposase	A0A1B1P7S0	Bacillus_phage	38.9	1.4e-06
VFI50557.1|445410_445938_-|transposase	degenerate transposase	transposase	NA	NA	NA	NA
VFI50559.1|446192_447038_+	undecaprenol kinase	NA	NA	NA	NA	NA
VFI50561.1|447184_447625_-	DNA polymerase IV	NA	NA	NA	NA	NA
VFI50563.1|447602_448247_-	DNA polymerase IV	NA	NA	NA	NA	NA
VFI50565.1|448594_450919_+	pyruvate formate-lyase	NA	A0A2P0VNR5	Tetraselmis_virus	32.9	7.9e-115
VFI50567.1|451285_451504_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI50568.1|451830_452115_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI50570.1|452726_452897_-|transposase	ISSpo8 transposase	transposase	NA	NA	NA	NA
VFI50572.1|453626_454085_+	PTS system lactose-specific transporter subunit IIBC	NA	NA	NA	NA	NA
VFI50574.1|454210_455650_-	potassium uptake protein	NA	NA	NA	NA	NA
VFI50576.1|455653_457003_-	potassium uptake protein	NA	NA	NA	NA	NA
VFI50578.1|457191_458040_+	Molybdate/tungstate binding protein	NA	NA	NA	NA	NA
VFI50581.1|458054_458603_+	protein YdcD	NA	NA	NA	NA	NA
VFI50583.1|458609_458867_+	N-ethylammeline chlorohydrolase	NA	NA	NA	NA	NA
VFI50585.1|458968_460651_+	cobalt ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.4	4.5e-19
VFI50587.1|460635_461466_+	ABC transporter permease	NA	NA	NA	NA	NA
VFI50589.1|461658_462162_+	RNA methyltransferase	NA	NA	NA	NA	NA
VFI50591.1|462614_463178_+	riboflavin transporter	NA	NA	NA	NA	NA
VFI50593.1|463167_463818_+	phosphatase	NA	NA	NA	NA	NA
VFI50595.1|463845_464235_+	putative histone acetyltransferase	NA	NA	NA	NA	NA
VFI50597.1|464239_464689_+	sortase-like acyltransferase	NA	NA	NA	NA	NA
VFI50599.1|464801_465404_+	DNA-dependent RNA Polymerase, delta subunit (RNAP delta factor)	NA	NA	NA	NA	NA
VFI50601.1|465793_467401_+	CTP synthetase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	47.0	8.9e-142
VFI50603.1|467959_468364_-	sodium-dependent phosphate transporter	NA	NA	NA	NA	NA
VFI50605.1|468365_469571_-	sodium-dependent phosphate transporter	NA	NA	NA	NA	NA
VFI50607.1|469863_474843_+	endo-beta-N-acetylglucosaminidase	NA	NA	NA	NA	NA
VFI50609.1|474932_476129_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
VFI50611.1|476264_476792_+	signal peptide	NA	NA	NA	NA	NA
VFI50613.1|476868_477225_+	transcriptional repressor of the glutamine synthetase gene	NA	NA	NA	NA	NA
VFI50615.1|477261_478608_+	glutamate-ammonia ligase	NA	NA	NA	NA	NA
VFI50617.1|478787_478937_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI50619.1|479403_480687_+	type I site-specific deoxyribonuclease chain S	NA	NA	NA	NA	NA
480020:480079	attL	TTGAAAAAATACGAGCAGAAAAACAAAAACTCTTTGAAGAAGGCAAGATTAAAAAGAAAG	NA	NA	NA	NA
VFI50621.1|480743_481541_+|integrase	integrase/recombinase, phage integrase family	integrase	A0A0H4TI16	Erysipelothrix_phage	28.7	1.3e-21
480020:480079	attL	TTGAAAAAATACGAGCAGAAAAACAAAAACTCTTTGAAGAAGGCAAGATTAAAAAGAAAG	NA	NA	NA	NA
VFI50623.1|481611_482157_+	type I restriction enzyme	NA	NA	NA	NA	NA
VFI50625.1|482104_482800_-	type I restriction enzyme	NA	A0A1V0SLK8	Klosneuvirus	30.1	4.4e-13
VFI50627.1|482768_483011_-	restriction endonuclease S subunit	NA	NA	NA	NA	NA
482713:482820	attR	CTTTCTTTTTAATCTTGCCTTCTTCAAAGAGTTTTTGTTTTTCTGCTCGTATTTTTTCAATAATCTTTGATTGGTCGTGGAGAGCCACCTCTGATAATTTCAACCAAT	NA	NA	NA	NA
VFI50629.1|483010_484474_-	type I restriction-modification system M protein	NA	NA	NA	NA	NA
482713:482820	attR	CTTTCTTTTTAATCTTGCCTTCTTCAAAGAGTTTTTGTTTTTCTGCTCGTATTTTTTCAATAATCTTTGATTGGTCGTGGAGAGCCACCTCTGATAATTTCAACCAAT	NA	NA	NA	NA
VFI50631.1|484486_486820_-	type I restriction-modification system, R subunit	NA	Q5YA94	Bacillus_phage	27.6	5.8e-25
VFI50633.1|487191_487392_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI50635.1|487426_487936_+	Protein of uncharacterised function (DUF2812)	NA	NA	NA	NA	NA
VFI50637.1|488099_489134_+	heat-inducible transcription repressor	NA	NA	NA	NA	NA
VFI50638.1|489160_489685_+	heat shock protein GrpE	NA	NA	NA	NA	NA
VFI50640.1|490164_491988_+	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	47.2	1.3e-133
VFI50642.1|491989_492346_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI50643.1|492747_493884_+	dnaJ protein, Heat-shock protein (activation of DnaK)	NA	E3T4P7	Cafeteria_roenbergensis_virus	31.3	2.4e-24
VFI50644.1|494218_494506_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI50646.1|494515_494926_-	protein hit	NA	B5LJ12	Mycobacterium_phage	31.6	3.4e-05
VFI50647.1|494993_495725_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.6	5.3e-25
VFI50649.1|495721_496771_+	ABC transporter permease	NA	NA	NA	NA	NA
VFI50651.1|496938_497268_-	BlpT protein, fusion	NA	NA	NA	NA	NA
VFI50653.1|497543_497882_+	regulatory protein, single domain response regulator	NA	NA	NA	NA	NA
VFI50655.1|497886_498624_+	response regulator	NA	NA	NA	NA	NA
VFI50657.1|498637_499978_+	sensor histidine kinase BlpH	NA	NA	NA	NA	NA
VFI50659.1|500022_500178_-|bacteriocin	peptide pheromone BlpC (bacteriocin-like peptide)	bacteriocin	NA	NA	NA	NA
VFI50661.1|500234_501596_-	BlpC ABC transporter	NA	NA	NA	NA	NA
VFI50663.1|501606_503760_-	competence factor transporting ATP-binding protein/permease ComA	NA	W8CYL7	Bacillus_phage	27.9	1.4e-41
VFI50665.1|504040_504271_+|bacteriocin	bacteriocin-like peptide N BlpN	bacteriocin	NA	NA	NA	NA
VFI50667.1|504689_504854_+	putative immunity protein	NA	NA	NA	NA	NA
VFI50669.1|504850_505255_+	immunity protein BlpL	NA	NA	NA	NA	NA
VFI50671.1|505883_506267_+	putative immunity protein BlpX	NA	NA	NA	NA	NA
VFI50673.1|506318_507008_+|protease	metal-dependent CAAX amino terminal membrane protease	protease	NA	NA	NA	NA
VFI50675.1|507049_507298_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
VFI50676.1|507327_507939_+|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
VFI50678.1|508099_508894_+	aminoglycoside phosphotransferase	NA	NA	NA	NA	NA
VFI50680.1|508890_509526_+|tRNA	tRNA (guanine-N(7)-)-methyltransferase	tRNA	NA	NA	NA	NA
VFI50682.1|509651_510131_+	SP14.3 protein	NA	NA	NA	NA	NA
VFI50684.1|510186_511311_+	transcription elongation factor NusA	NA	NA	NA	NA	NA
VFI50686.1|511332_511626_+	cytosolic protein YlxR	NA	NA	NA	NA	NA
VFI50688.1|511618_511918_+	L7A family ribosomal protein	NA	NA	NA	NA	NA
VFI50690.1|511934_514727_+	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	22.9	3.3e-19
VFI50692.1|514977_515328_+	ribosome-binding factor A	NA	NA	NA	NA	NA
VFI50694.1|515606_515786_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI50696.1|515867_516386_+	ABC transporter ATPase	NA	NA	NA	NA	NA
VFI50698.1|516387_516570_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI50700.1|516566_516719_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI50702.1|517031_517265_+	Domain of uncharacterised function (DUF1858)	NA	NA	NA	NA	NA
VFI50704.1|517264_518599_+	hemerythrin HHE cation binding domain subfamily	NA	NA	NA	NA	NA
VFI50706.1|518608_518863_+	aldose 1-epimerase	NA	NA	NA	NA	NA
VFI50708.1|518958_519354_+	Helicase	NA	NA	NA	NA	NA
VFI50710.1|519853_520216_+	conserved protein/domain typically associated with flavoprotein oxygenase, Dim6/ntab family	NA	NA	NA	NA	NA
VFI50712.1|520202_520763_+	acetyltransferase, gnat family	NA	NA	NA	NA	NA
VFI50714.1|520762_521341_+	shikimate kinase	NA	NA	NA	NA	NA
VFI50716.1|521333_523985_+|tRNA	valyl-tRNA synthetase	tRNA	A0A1V0S951	Catovirus	41.1	2.7e-151
VFI50718.1|524054_524810_+	Zn-finger	NA	NA	NA	NA	NA
VFI50720.1|525086_525890_+	Fic protein family	NA	NA	NA	NA	NA
VFI50722.1|526005_526839_-|integrase	integrase core domain-containing protein	integrase	A0A1B1P773	Bacillus_phage	50.0	2.6e-60
VFI50724.1|527058_527271_-|transposase	degenerate transposase (Orf1)	transposase	NA	NA	NA	NA
VFI50725.1|527811_528651_+	transcription antiterminator LicT	NA	NA	NA	NA	NA
VFI50727.1|528668_530507_+	PTS system beta-glucoside-specific transporter subunit EIIABC	NA	NA	NA	NA	NA
VFI50729.1|530519_531935_+	beta-glucosidase	NA	A0A0B5JD41	Pandoravirus	23.7	1.9e-23
VFI50731.1|532526_533573_+|tRNA	phenylalanyl-tRNA synthetase, alpha chain	tRNA	A0A2I2L4E3	Orpheovirus	32.8	1.6e-27
VFI50732.1|533572_534082_+	acetyltransferase, GNAT family	NA	NA	NA	NA	NA
VFI50734.1|534158_536561_+|tRNA	phenylalanyl-tRNA synthetase, beta chain	tRNA	NA	NA	NA	NA
VFI50736.1|536628_537630_-	endonuclease/exonuclease/phosphatase family	NA	NA	NA	NA	NA
VFI50738.1|537785_538280_+|transposase	IS1239, transposase, putative	transposase	NA	NA	NA	NA
VFI50740.1|538426_538624_+	transcriptional regulator	NA	NA	NA	NA	NA
VFI50742.1|538884_541134_+	5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase	NA	NA	NA	NA	NA
VFI50744.1|541197_542064_+	5,10-methylenetetrahydrofolate reductase	NA	NA	NA	NA	NA
VFI50745.1|542748_544962_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
VFI50747.1|544977_545595_+	serine O-acetyltransferase	NA	NA	NA	NA	NA
VFI50749.1|545606_546491_+	GNAT family acetyltransferase	NA	NA	NA	NA	NA
VFI50751.1|546577_547921_+|tRNA	cysteinyl-tRNA synthetase	tRNA	M1PG92	Moumouvirus	35.8	1.2e-46
559012:559045	attR	AGCTGACGTGGTTTGAAGAGATTTTCGAAGAGTA	NA	NA	NA	NA
>prophage 5
LR216067	Streptococcus pneumoniae isolate b04a6400-1f66-11e7-b93e-3c4a9275d6c8 genome assembly, chromosome: 1	2074160	588899	632318	2074160	transposase,tRNA,protease,holin	Staphylococcus_prophage(28.57%)	30	NA	NA
VFI50831.1|588899_595319_+|protease	serine protease	protease	NA	NA	NA	NA
VFI50833.1|596140_596380_-|transposase	transposase family protein	transposase	NA	NA	NA	NA
VFI50835.1|597887_598364_+	PTS system transporter subunit IIA	NA	NA	NA	NA	NA
VFI50837.1|598401_598707_+	PTS system IIB component (galactitol/fructose specific)	NA	NA	NA	NA	NA
VFI50838.1|598754_600230_+	PTS system galactitol-specific family transporter subunit IIC	NA	NA	NA	NA	NA
VFI50840.1|600255_600447_+	chlorohydrolase	NA	NA	NA	NA	NA
VFI50842.1|600534_607236_+	beta-galactosidase	NA	NA	NA	NA	NA
VFI50844.1|607483_608107_-|transposase	transposase	transposase	Q9MBP7	Staphylococcus_prophage	38.2	3.4e-04
VFI50846.1|608094_608340_-|transposase	transposase	transposase	Q9MBP7	Staphylococcus_prophage	44.9	7.7e-13
VFI50848.1|608550_608910_-	integral membrane protein	NA	NA	NA	NA	NA
VFI50850.1|609001_609454_+	radical SAM superfamily protein (pseudogene)	NA	NA	NA	NA	NA
VFI50852.1|609511_609958_+	putative Fe-S oxidoreductase	NA	A0A2H4PQV5	Staphylococcus_phage	49.6	4.2e-33
VFI50854.1|609941_610499_+	SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	40.9	6.9e-33
VFI50855.1|610491_610746_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI50857.1|610757_612812_+	Na+/H+ antiporter	NA	NA	NA	NA	NA
VFI50859.1|612990_613851_+	ribonuclease BN	NA	NA	NA	NA	NA
VFI50861.1|614061_614772_+	cytochrome c-type biogenesis protein	NA	NA	NA	NA	NA
VFI50863.1|614791_615358_+	thioredoxin	NA	NA	NA	NA	NA
VFI50865.1|615368_616481_+	peptide methionine sulfoxide reductase	NA	NA	NA	NA	NA
VFI50867.1|616793_617531_+	DNA-binding response regulator	NA	NA	NA	NA	NA
VFI50869.1|617527_619219_+	histidine kinase	NA	Q9EYF3	Enterobacteria_phage	32.7	9.4e-25
VFI50871.1|619334_619898_+	UPF0340 protein SSU05	NA	NA	NA	NA	NA
VFI50873.1|619919_625625_+|protease	zinc metalloprotease ZmpB	protease	NA	NA	NA	NA
VFI50875.1|625685_627407_+	chorismate binding enzyme para-aminobenzoate synthetase	NA	S4VT78	Pandoravirus	28.3	7.1e-36
VFI50877.1|627407_628025_+	putative alpha/beta superfamily hydrolase	NA	NA	NA	NA	NA
VFI50879.1|628074_629073_+|holin	choline binding protein	holin	NA	NA	NA	NA
VFI50881.1|629199_630159_+	glucokinase	NA	NA	NA	NA	NA
VFI50883.1|630255_631095_+	thymidylate synthase	NA	U5J9N5	Bacillus_phage	55.0	3.6e-86
VFI50885.1|631142_631313_-	putative uncharacterized protein ORF 3	NA	NA	NA	NA	NA
VFI50887.1|631433_632318_+|tRNA	tRNA delta(2)-isopentenylpyrophosphate transferase	tRNA	NA	NA	NA	NA
>prophage 6
LR216067	Streptococcus pneumoniae isolate b04a6400-1f66-11e7-b93e-3c4a9275d6c8 genome assembly, chromosome: 1	2074160	748181	795043	2074160	transposase,integrase,protease	Mycobacterium_phage(16.67%)	46	792642:792701	795047:795589
VFI51140.1|748181_748586_+|transposase	transposase	transposase	NA	NA	NA	NA
VFI51142.1|748617_749127_+|transposase	transposase family protein	transposase	NA	NA	NA	NA
VFI51144.1|749760_750060_-	Domain of uncharacterised function (DUF1827)	NA	NA	NA	NA	NA
VFI51146.1|750224_750647_-	mutT/nudix family protein	NA	NA	NA	NA	NA
VFI51148.1|750757_751087_+|transposase	IS630-Spn1, transposase Orf1	transposase	NA	NA	NA	NA
VFI51150.1|751811_754070_-|protease	ATP-dependent Clp protease, ATP-binding subunit	protease	K4FB40	Cronobacter_phage	40.4	4.6e-128
VFI51152.1|754298_754529_-	Protein of uncharacterised function (DUF1797)	NA	NA	NA	NA	NA
VFI51154.1|754718_755402_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
VFI51156.1|755401_756136_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	43.1	1.3e-36
VFI51158.1|756289_757147_+	FolD bifunctional protein; includes: methylenetetrahydrofolate dehydrogenase, methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	41.5	1.5e-39
VFI51160.1|757288_758161_+	carbohydrate kinase	NA	NA	NA	NA	NA
VFI51162.1|758442_759126_+	ribose-5-phosphate isomerase A	NA	NA	NA	NA	NA
VFI51164.1|759139_760351_+	phosphopentomutase	NA	NA	NA	NA	NA
VFI51166.1|760352_760526_+	phosphopentomutase	NA	NA	NA	NA	NA
VFI51168.1|760640_760910_+	phosphopentomutase	NA	NA	NA	NA	NA
VFI51170.1|760909_761719_+	purine nucleoside phosphorylase	NA	NA	NA	NA	NA
VFI51172.1|762303_763179_+	topology modulation protein	NA	NA	NA	NA	NA
VFI51174.1|763201_763717_+	pneumolysin	NA	NA	NA	NA	NA
VFI51176.1|764370_765081_+	purine nucleoside phosphorylase	NA	NA	NA	NA	NA
VFI51178.1|765130_766126_-|transposase	IS1167, transposase	transposase	A0A1S5SBP9	Streptococcus_phage	99.1	9.9e-184
VFI51180.1|766435_766933_+	GAF domain-containing protein	NA	NA	NA	NA	NA
VFI51182.1|766932_768588_+	DNA polymerase III subunits gamma and tau	NA	A0A1L2BWV7	Bacteriophage	33.5	1.1e-46
VFI51184.1|768615_768810_+	membrane protein	NA	NA	NA	NA	NA
VFI51186.1|768959_769730_+	FeS assembly ATPase SufC	NA	A0A2R8FG22	Brazilian_cedratvirus	28.5	2.5e-09
VFI51188.1|769757_771020_+	FeS assembly protein SufD	NA	NA	NA	NA	NA
VFI51190.1|771030_772257_+	class-V aminotransferase	NA	Q2XUY6	environmental_halophage	44.8	1.9e-104
VFI51192.1|772243_772684_+	nifU family protein	NA	A0A2P1CJL8	Mycobacterium_phage	39.0	3.6e-13
VFI51194.1|772737_774150_+	Iron-sulfur cluster assembly protein SufB	NA	NA	NA	NA	NA
VFI51196.1|774380_775622_-	D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 3	NA	B6DZZ7	Stx2-converting_phage	25.2	3.1e-17
VFI51198.1|775724_776834_+	putative permease	NA	NA	NA	NA	NA
VFI51200.1|778257_778998_+	transcriptional repressor of fructose operon	NA	NA	NA	NA	NA
VFI51202.1|778994_779906_+	fructose-1-phosphate kinase	NA	NA	NA	NA	NA
VFI51204.1|779902_781855_+	PTS system, fructose specific IIBC component	NA	NA	NA	NA	NA
VFI51206.1|781940_784244_+	DNA translocase, cell division protein	NA	S5VNE3	Mycobacterium_phage	49.9	1.0e-85
VFI51208.1|784288_784717_-	membrane protein	NA	NA	NA	NA	NA
VFI51210.1|784794_785997_+	class-V aminotransferase	NA	NA	NA	NA	NA
VFI51212.1|786005_787220_+	thiamine biosynthesis ATP pyrophosphatase	NA	NA	NA	NA	NA
VFI51214.1|787354_788179_+	Esterase	NA	NA	NA	NA	NA
VFI51216.1|788200_788536_+	esterase superfamily protein	NA	NA	NA	NA	NA
VFI51218.1|788532_788940_+	esterase	NA	NA	NA	NA	NA
VFI51219.1|788952_790119_+	carbamoylphosphate synthase large subunit	NA	NA	NA	NA	NA
VFI51220.1|790626_792120_+	type I restriction modification enzyme methylase subunit	NA	A0A2H4UVB0	Bodo_saltans_virus	31.5	1.5e-26
VFI51222.1|792132_793254_+	type I restriction-modification system, S subunit, putative	NA	NA	NA	NA	NA
792642:792701	attL	CAAATCCCGATTTAACGAGATGTTTGGGGAAAATAAAATATTTGAAAGCATTGATAACTT	NA	NA	NA	NA
VFI51224.1|793313_793550_+	toxin-antitoxin system, antitoxin component,AbrB family	NA	NA	NA	NA	NA
VFI51226.1|793546_793960_+	prophage maintenance system killer protein	NA	NA	NA	NA	NA
VFI51228.1|794077_795043_+|integrase	integrase/recombinase, phage integrase family protein	integrase	A0A2H4JAA2	uncultured_Caudovirales_phage	29.6	1.4e-33
795047:795589	attR	CAAATCCCGATTTAACGAGATGTTTGGGGAAAATAAAATATTTGAAAGCATTGATAACTTATTTGATATTATAGATGGTGATAGGGGCAAAAATTATCCTAAATCAGATGAGTTGTTTAGTGAGGAGTACTGTTTATTTTTAAATACAAAGAATGTTACTAAAAACGGATTTTCATTCGATACAAAGCAATTTATCACTAAAACAAAGGATAAATTACTTCGAAAAGGCAAACTTGAGCGTTATGATATAGTCTTGACAACAAGAGGTACTGTTGGAAATGTAGCGTACTACGATGAATTAATAAAATATAAACATTTACGTATAAATTCAGGTATGGTAATATTACGTCCCAAGACACCAAATCTAAATCAGAAATTTATTATCCATGTTTTAAGGAATAATAATTATAGTCGAGTGATATCAGGAAGTGCTCAGCCTCAGTTACCAATTACAAAATTAAAAAAAATACTTCTCCCCCTTCCCCCACTAGCCCTCCAAAATGAGTTCGCAGACTTTGTAGCCCTGGTCGACAAATCACAATT	NA	NA	NA	NA
>prophage 7
LR216067	Streptococcus pneumoniae isolate b04a6400-1f66-11e7-b93e-3c4a9275d6c8 genome assembly, chromosome: 1	2074160	811190	848669	2074160	transposase,tRNA,protease,holin	Streptococcus_phage(57.14%)	43	NA	NA
VFI51246.1|811190_811574_-|transposase	transposase-like protein, IS1381 ISSpn7	transposase	NA	NA	NA	NA
VFI51248.1|811716_812028_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI51250.1|812031_812226_+	alpha/beta hydrolase related protein	NA	NA	NA	NA	NA
VFI51252.1|812283_812748_+	alpha/beta hydrolase related protein	NA	NA	NA	NA	NA
VFI51254.1|812877_813693_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
VFI51256.1|813689_814595_-	membrnae protein	NA	NA	NA	NA	NA
VFI51258.1|814595_814727_-	putative type II restriction endonuclease DpnI	NA	NA	NA	NA	NA
VFI51260.1|815006_817136_+	S1 RNA-binding domain-containing protein	NA	NA	NA	NA	NA
VFI51262.1|817122_817572_+	SprT family protein	NA	NA	NA	NA	NA
VFI51265.1|817629_817902_+	PspC domain-containing protein	NA	NA	NA	NA	NA
VFI51267.1|818255_818447_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI51269.1|818749_818860_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI51271.1|818874_819633_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.3	7.7e-27
VFI51273.1|819634_821623_+	ABC transporter, membrane-spanning protein	NA	NA	NA	NA	NA
VFI51275.1|821664_822255_-	integral membrane protein	NA	NA	NA	NA	NA
VFI51277.1|822334_823330_-|transposase	IS1239 transposase	transposase	H7BVY4	unidentified_phage	35.4	1.5e-35
VFI51279.1|824036_825512_+	ornithine decarboxylase family protein	NA	NA	NA	NA	NA
VFI51281.1|825665_826193_-|transposase	degenerate transposase	transposase	NA	NA	NA	NA
VFI51283.1|826447_827308_+	spermidine synthase	NA	NA	NA	NA	NA
VFI51284.1|827304_828564_+	dehydrogenase family protein, saccharopine dehydrogenase	NA	NA	NA	NA	NA
VFI51286.1|828563_829691_+	LysA-like decarboxylase, diaminopimelate decarboxylase putative	NA	NA	NA	NA	NA
VFI51288.1|829687_830773_+	agmatine deiminase	NA	M1HES8	Acanthocystis_turfacea_Chlorella_virus	47.5	1.6e-89
VFI51290.1|830782_831658_+	carbon-nitrogen hydrolase family protein	NA	M1H5W0	Paramecium_bursaria_Chlorella_virus	50.0	1.1e-77
VFI51292.1|831838_832648_-	Cof family protein	NA	NA	NA	NA	NA
VFI51294.1|832919_833141_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI51296.1|833194_833866_+|protease	caax amino protease family protein	protease	NA	NA	NA	NA
VFI51298.1|834107_835016_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	27.7	3.1e-06
VFI51299.1|835012_835474_+	lipoprotein signal peptidase, signal peptidase type II	NA	NA	NA	NA	NA
VFI51301.1|835463_836351_+	23S rluA family pseudouridine synthase	NA	NA	NA	NA	NA
VFI51302.1|836353_838237_+|holin	choline binding protein E CbpE	holin	Q332B9	Clostridium_botulinum_C_phage	22.9	1.2e-09
VFI51304.1|838337_839447_+	gamma-glutamyl kinase	NA	A0A1X9I5D0	Streptococcus_phage	58.4	8.4e-115
VFI51306.1|839456_840719_+	gamma-glutamyl phosphate reductase	NA	A0A1X9I5D4	Streptococcus_phage	64.5	2.5e-139
VFI51308.1|840722_841520_+	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	50.6	2.7e-59
VFI51309.1|841739_842378_+	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	68.1	9.8e-76
VFI51311.1|842374_843265_+	DNA polymerase III, delta' subunit	NA	M1NSC1	Streptococcus_phage	51.4	1.4e-72
VFI51313.1|843304_843622_+	DNA replication intiation control protein YabA	NA	M1PFV3	Streptococcus_phage	60.0	2.9e-28
VFI51315.1|843624_844494_+	tetrapyrrole methylase	NA	M1PLC5	Streptococcus_phage	75.7	2.3e-115
VFI51317.1|844720_845239_+	DUF1706 domain-containing protein	NA	NA	NA	NA	NA
VFI51319.1|845347_845485_+	phage protein, point mutation	NA	NA	NA	NA	NA
VFI51321.1|845491_845896_+	phage protein	NA	A0A2P0VK56	Streptococcus_phage	40.0	4.2e-08
VFI51323.1|845983_846373_-	fusion of IS1381 orf A and B	NA	NA	NA	NA	NA
VFI51325.1|846389_846791_-|transposase	transposase-like protein, IS1381 ISSpn7	transposase	NA	NA	NA	NA
VFI51327.1|847334_848669_+|tRNA	tRNA (uracil-5-)-methyltransferase Gid	tRNA	NA	NA	NA	NA
>prophage 8
LR216067	Streptococcus pneumoniae isolate b04a6400-1f66-11e7-b93e-3c4a9275d6c8 genome assembly, chromosome: 1	2074160	1014566	1121629	2074160	transposase,protease,holin	Bacillus_phage(21.74%)	110	NA	NA
VFI51662.1|1014566_1014965_-|transposase	IS630-Spn1, transposase Orf1	transposase	NA	NA	NA	NA
VFI51664.1|1015382_1016660_-	cell division protein FtsY	NA	NA	NA	NA	NA
VFI51666.1|1016663_1017482_-	Cof family protein	NA	NA	NA	NA	NA
VFI51668.1|1017481_1018276_-	Cof family protein	NA	NA	NA	NA	NA
VFI51670.1|1018272_1021812_-	chromosome condensation and segregation SMC protein	NA	NA	NA	NA	NA
VFI51672.1|1021802_1022501_-	ribonuclease III	NA	J2YAN1	Acanthamoeba_polyphaga_lentillevirus	33.8	2.3e-25
VFI51673.1|1022818_1023805_-	GMP reductase	NA	G3MBI2	Bacillus_virus	72.2	1.4e-137
VFI51675.1|1023979_1025323_-	McrBC 5-methylcytosine restriction system component	NA	NA	NA	NA	NA
VFI51677.1|1025282_1027214_-	endonuclease	NA	K4I1H4	Acidithiobacillus_phage	33.7	1.8e-16
VFI51679.1|1027379_1027550_-	translation factor	NA	NA	NA	NA	NA
VFI51681.1|1028165_1028525_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
VFI51683.1|1028528_1028798_-	membrane protein	NA	NA	NA	NA	NA
VFI51685.1|1028794_1029832_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
VFI51687.1|1029843_1030878_-	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	29.5	4.1e-07
VFI51689.1|1030896_1031553_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VFI51691.1|1031596_1032229_-	copper homeostasis protein	NA	NA	NA	NA	NA
VFI51693.1|1032321_1032681_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
VFI51695.1|1032901_1034989_-	DNA topoisomerase I	NA	A0A1V0SCS0	Indivirus	37.5	8.7e-105
VFI51697.1|1035155_1036199_-	membrane protein	NA	NA	NA	NA	NA
VFI51699.1|1037037_1037886_-	DNA processing protein DprA	NA	S6BFL3	Thermus_phage	39.5	3.3e-34
VFI51701.1|1037981_1038671_-|holin	CTP:phosphocholine cytidylyltransferase	holin	A0A127AW70	Bacillus_phage	45.0	3.4e-05
VFI51703.1|1038682_1039561_-	drug/metabolite transporter (DMT) superfamily permease	NA	NA	NA	NA	NA
VFI51705.1|1039550_1040420_-|holin	choline kinase	holin	NA	NA	NA	NA
VFI51707.1|1040436_1041459_-	zinc-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
VFI51708.1|1041463_1042171_-	cytidylyltransferase	NA	NA	NA	NA	NA
VFI51710.1|1042506_1043994_+	teichoic acid subunit flippase	NA	NA	NA	NA	NA
VFI51712.1|1044003_1044807_+|holin	phosphorylcholine transferase LicD1	holin	A0A1V0SD50	Indivirus	32.4	5.8e-09
VFI51714.1|1044808_1045618_+	licD2 protein	NA	A0A1V0SD50	Indivirus	30.3	9.1e-10
VFI51716.1|1045892_1049069_-	carbamoyl-phosphate synthase, large subunit	NA	NA	NA	NA	NA
VFI51718.1|1049380_1050460_-	carbamoyl-phosphate synthase, small subunit	NA	R4TGJ8	Halovirus	35.9	6.3e-59
VFI51720.1|1050509_1051433_-	aspartate carbamoyltransferase	NA	M1HGA5	Paramecium_bursaria_Chlorella_virus	31.7	3.0e-25
VFI51722.1|1051451_1051973_-	transcriptional attenuation of the pyrimidine operon/uracil phosphoribosyltransferase (bifunctional protein)	NA	NA	NA	NA	NA
VFI51724.1|1052183_1052813_-	endonuclease III (DNA repair), DNA-(apurinic or apyrimidinic site) lyase	NA	NA	NA	NA	NA
VFI51727.1|1052812_1053355_-	putative metal-binding, possibly nucleic acid-binding protein	NA	NA	NA	NA	NA
VFI51729.1|1053524_1053842_+	BlpT protein, fusion	NA	NA	NA	NA	NA
VFI51731.1|1054080_1055640_+	ABC transporter ATP-binding protein	NA	A0A1B0RXA0	Streptococcus_phage	27.0	2.1e-10
VFI51733.1|1055683_1056583_-	heat shock protein HtpX	NA	NA	NA	NA	NA
VFI51735.1|1056584_1057145_-	Cytoplasmic membrane protein LemA	NA	NA	NA	NA	NA
VFI51737.1|1057238_1057952_+	16S rRNA methyltransferase GidB	NA	NA	NA	NA	NA
VFI51739.1|1058254_1059538_+	uracil permease	NA	Q9KX94	Enterobacteria_phage	35.3	1.4e-60
VFI51740.1|1059732_1061304_-	signal recognition particle protein	NA	NA	NA	NA	NA
VFI51742.1|1061315_1061648_-	transcriptional regulator	NA	NA	NA	NA	NA
VFI51743.1|1061737_1062115_-	hypothetical cytosolic protein	NA	NA	NA	NA	NA
VFI51745.1|1062186_1063407_+	dGTP triphosphohydrolase	NA	E3T4P8	Cafeteria_roenbergensis_virus	30.2	1.6e-26
VFI51747.1|1063502_1064309_+	hydrolase	NA	NA	NA	NA	NA
VFI51749.1|1064351_1065350_+	SAP domain-containing protein	NA	NA	NA	NA	NA
VFI51751.1|1065630_1065978_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
VFI51753.1|1066096_1066426_-	CrcB protein	NA	A0A2H4PQR0	Staphylococcus_phage	37.8	6.3e-10
VFI51755.1|1066419_1066794_-	CrcB protein	NA	NA	NA	NA	NA
VFI51757.1|1066790_1067057_-	chorismate mutase/prephenate dehydratase	NA	NA	NA	NA	NA
VFI51759.1|1067172_1067616_-	flavodoxin	NA	NA	NA	NA	NA
VFI51761.1|1067719_1068655_+	DHH subfamily 1 protein	NA	NA	NA	NA	NA
VFI51763.1|1068750_1068993_+	50S ribosomal protein L31	NA	NA	NA	NA	NA
VFI51765.1|1069049_1069268_-	high-affinity Fe2+/Pb2+ permease	NA	NA	NA	NA	NA
VFI51767.1|1069575_1069827_-|transposase	transposase-like protein, ISSpn2	transposase	NA	NA	NA	NA
VFI51769.1|1070352_1071699_+	glutamate dehydrogenase	NA	NA	NA	NA	NA
VFI51771.1|1072194_1072365_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
VFI51773.1|1072377_1072824_-	multidrug resistance protein 1 (ATP-binding cassettesub-family B member 1) (P-glycoprotein 1)(antigen)	NA	W8CYL7	Bacillus_phage	45.7	1.9e-09
VFI51775.1|1073013_1073361_-|transposase	transposase	transposase	NA	NA	NA	NA
VFI51777.1|1073377_1073776_-|transposase	transposase-like protein, IS1381 ISSpn7	transposase	NA	NA	NA	NA
VFI51779.1|1073868_1074027_-|transposase	transposase	transposase	NA	NA	NA	NA
VFI51781.1|1074621_1075062_-|transposase	transposase	transposase	A0A218MNE7	uncultured_virus	24.6	1.9e-06
VFI51783.1|1075515_1075839_-|transposase	IS66-Spn1 transposase	transposase	NA	NA	NA	NA
VFI51785.1|1075819_1076005_-	IS66 family element, orf1	NA	NA	NA	NA	NA
VFI51787.1|1076277_1076889_-	ATP synthase, subunit D	NA	NA	NA	NA	NA
VFI51789.1|1076911_1078297_-	V-type H+-ATPase, subunit B	NA	NA	NA	NA	NA
VFI51791.1|1078297_1080073_-	V-type ATP synthase subunit A	NA	NA	NA	NA	NA
VFI51793.1|1080135_1080456_-	V-type H+-ATPase, subunit F	NA	NA	NA	NA	NA
VFI51795.1|1080445_1081453_-	V-type H+-ATPase, subunit C	NA	NA	NA	NA	NA
VFI51797.1|1081517_1082099_-	V-type H+-ATPase, subunit E	NA	NA	NA	NA	NA
VFI51798.1|1082132_1082609_-	V-type H+-ATPase, subunit K	NA	NA	NA	NA	NA
VFI51800.1|1082624_1084616_-	V-type H+-ATPase, subunit I	NA	NA	NA	NA	NA
VFI51802.1|1084605_1084929_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI51804.1|1084953_1085844_-	transcriptional regulator	NA	NA	NA	NA	NA
VFI51806.1|1086000_1087110_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
VFI51808.1|1087149_1089372_-	sialidase B	NA	NA	NA	NA	NA
VFI51810.1|1089373_1089832_-	beta-galactosidase subunit beta	NA	NA	NA	NA	NA
VFI51811.1|1091419_1092337_-	N-acetylneuraminate lyase	NA	NA	NA	NA	NA
VFI51813.1|1092361_1093063_-	N-acetylmannosamine-6-phosphate epimerase	NA	NA	NA	NA	NA
VFI51815.1|1093067_1093877_-	transcriptional regulator	NA	NA	NA	NA	NA
VFI51817.1|1094277_1094865_-|protease	Tn5253 CAAX amino terminal protease family	protease	NA	NA	NA	NA
VFI51819.1|1094867_1095101_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI51821.1|1095113_1095494_-	arsenate reductase-like glutaredoxin family protein	NA	NA	NA	NA	NA
VFI51823.1|1096057_1097281_-	putative DNA methylase	NA	A0A1C9LX33	Streptococcus_phage	54.4	3.0e-113
VFI51824.1|1097942_1098080_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI51825.1|1098212_1099532_-	permease	NA	NA	NA	NA	NA
VFI51827.1|1099534_1100275_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.8	7.0e-09
VFI51829.1|1100323_1100908_-	drug efflux ABC transporter ATP-binding/permease	NA	G9BWD6	Planktothrix_phage	33.7	1.6e-11
VFI51831.1|1101096_1102365_-	lantibiotic synthetase	NA	NA	NA	NA	NA
VFI51833.1|1102789_1102927_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI51835.1|1103128_1103716_-|protease	Tn5253 CAAX amino terminal protease family	protease	NA	NA	NA	NA
VFI51837.1|1103808_1103952_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI51839.1|1103964_1104345_-	arsenate reductase-like glutaredoxin family protein	NA	NA	NA	NA	NA
VFI51841.1|1104399_1104678_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI51843.1|1104685_1104940_-	replication initiator protein	NA	A0A286QNA4	Streptococcus_phage	36.8	5.0e-07
VFI51845.1|1104939_1105110_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI51847.1|1105296_1105665_-	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
VFI51849.1|1105740_1106241_-	50S ribosomal protein L10	NA	NA	NA	NA	NA
VFI51851.1|1106490_1108092_-	chlorohydrolase	NA	NA	NA	NA	NA
VFI51853.1|1108186_1109935_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	29.3	2.1e-48
VFI51855.1|1109936_1111661_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	28.3	1.1e-44
VFI51857.1|1111718_1112657_-	bifunctional methionine sulfoxide reductase	NA	NA	NA	NA	NA
VFI51859.1|1112951_1113821_-	N-ethylammeline chlorohydrolase	NA	NA	NA	NA	NA
VFI51861.1|1113822_1115109_-	homoserine dehydrogenase	NA	NA	NA	NA	NA
VFI51863.1|1115259_1115997_-	adaptor protein	NA	NA	NA	NA	NA
VFI51865.1|1116196_1117231_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI51867.1|1117259_1118696_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI51869.1|1118711_1119698_-	glycosyl transferase	NA	NA	NA	NA	NA
VFI51871.1|1119699_1120803_-	glycosyl transferase	NA	NA	NA	NA	NA
VFI51873.1|1120792_1121629_-|holin	phosphorylcholine transferase LicD3	holin	NA	NA	NA	NA
>prophage 9
LR216067	Streptococcus pneumoniae isolate b04a6400-1f66-11e7-b93e-3c4a9275d6c8 genome assembly, chromosome: 1	2074160	1137054	1190728	2074160	transposase,tRNA,holin	Bacillus_virus(20.0%)	57	NA	NA
VFI51903.1|1137054_1139673_-|tRNA	alanyl-tRNA synthetase	tRNA	A0A1V0SK38	Klosneuvirus	33.8	4.8e-60
VFI51905.1|1139694_1140180_-	Protein of uncharacterised function (DUF567)	NA	NA	NA	NA	NA
VFI51907.1|1140945_1142016_-	ABC transporter, spermidine/putrescine-binding protein	NA	NA	NA	NA	NA
VFI51909.1|1142012_1142786_-	spermidine/putrescine ABC transporter permease	NA	NA	NA	NA	NA
VFI51911.1|1142782_1143589_-	spermidine/putrescine ABC transporter permease	NA	Q6GZ02	Mycoplasma_phage	26.5	1.5e-12
VFI51913.1|1143569_1144727_-	spermidine/putrescine transport ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	40.4	5.8e-34
VFI51915.1|1144886_1145792_-	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA	NA
VFI51917.1|1145903_1146656_-	Predicted membrane protein	NA	NA	NA	NA	NA
VFI51919.1|1146665_1147337_-	alpha-acetolactate decarboxylase	NA	NA	NA	NA	NA
VFI51921.1|1147538_1148810_+	transcriptional regulator	NA	A0A1X9I5H2	Streptococcus_phage	47.5	1.0e-103
VFI51923.1|1148829_1149645_-	ABC transporter substrate-binding lipoprotein	NA	NA	NA	NA	NA
VFI51925.1|1149801_1150455_-	phosphate transport system regulatory protein PhoU	NA	NA	NA	NA	NA
VFI51927.1|1150466_1151225_-	phosphate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.6	6.7e-15
VFI51929.1|1151237_1152041_-	ABC transporter, ATP-binding protein-phosphate transport, (Phosphate-transporting ATPase 2)	NA	W8CYL7	Bacillus_phage	30.7	9.6e-12
VFI51931.1|1152051_1152936_-	phosphate ABC transporter permeae PstA	NA	NA	NA	NA	NA
VFI51933.1|1152925_1153843_-	phosphate transport protein PstC	NA	NA	NA	NA	NA
VFI51935.1|1153842_1154721_-	phosphate-binding protein PstS 1	NA	NA	NA	NA	NA
VFI51937.1|1155184_1155298_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI51939.1|1155294_1156599_-	NOL1/NOP2/sun family protein	NA	NA	NA	NA	NA
VFI51941.1|1156599_1157373_-	inositol monophosphatase	NA	NA	NA	NA	NA
VFI51943.1|1157362_1157641_-	hypothetical cytosolic protein	NA	NA	NA	NA	NA
VFI51945.1|1157640_1158042_-	regulatory protein Spx	NA	NA	NA	NA	NA
VFI51947.1|1158225_1158393_+|transposase	transposase-like protein, IS1239	transposase	NA	NA	NA	NA
VFI51949.1|1158525_1159143_-	integral membrane protein	NA	NA	NA	NA	NA
VFI51951.1|1159132_1159906_-	COG0647: sugar phosphatases of the HAD superfamily, N-acetyl-glucosamine catabolism protein	NA	NA	NA	NA	NA
VFI51953.1|1159916_1160654_-	acyl-ACP thioesterase	NA	NA	NA	NA	NA
VFI51955.1|1160658_1161789_-	Coproporphyrinogen III oxidase, oxygen-independent coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
VFI51957.1|1161872_1162262_-	exported hydrophilic protein	NA	NA	NA	NA	NA
VFI51959.1|1162277_1162661_-	methyl-accepting chemotaxis family domain-containing protein	NA	NA	NA	NA	NA
VFI51961.1|1162661_1163450_-	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
VFI51963.1|1163442_1164378_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
VFI51965.1|1164507_1164684_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
VFI51967.1|1164823_1165531_-	6-phosphogluconolactonase/Glucosamine-6- phosphateisomerase/deaminase	NA	NA	NA	NA	NA
VFI51969.1|1165681_1166710_+|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
VFI51971.1|1167370_1167760_-|holin	choline binding protein	holin	NA	NA	NA	NA
VFI51972.1|1168502_1168604_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI51974.1|1169220_1169772_-	GNAT family acetyltransferase	NA	NA	NA	NA	NA
VFI51976.1|1170121_1170946_-	NAD+ synthetase	NA	G3MA24	Bacillus_virus	57.5	1.8e-74
VFI51978.1|1170942_1172403_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	43.7	2.0e-103
VFI51980.1|1172739_1173006_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI51982.1|1172995_1173205_-	transcriptional repressor	NA	A0A1V0E021	Clostridioides_phage	49.1	4.1e-07
VFI51984.1|1173590_1174319_-	ABC-2 family transporter protein	NA	NA	NA	NA	NA
VFI51986.1|1174334_1175054_-	multidrug ABC transporter ATPase	NA	A0A2H4PQG7	Staphylococcus_phage	34.3	2.9e-15
VFI51988.1|1175560_1176286_-	peptidase, U32 family	NA	NA	NA	NA	NA
VFI51990.1|1176860_1178147_-	U32 family peptidase	NA	Q6DW11	Phage_TP	31.3	7.9e-40
VFI51992.1|1178770_1178953_+	restriction endonuclease (pseudogene)	NA	NA	NA	NA	NA
VFI51994.1|1179136_1180516_+	DNA modification methyltransferase M.XbaI	NA	A0A0H3UZ66	Geobacillus_virus	37.4	8.1e-43
VFI51996.1|1181030_1182023_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
VFI51998.1|1182182_1183937_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	25.2	1.4e-23
VFI52000.1|1183920_1185642_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.1e-28
VFI52002.1|1185652_1186237_+	major facilitator superfamily permease	NA	NA	NA	NA	NA
VFI52004.1|1186236_1186932_+	cobalt transport protein	NA	NA	NA	NA	NA
VFI52006.1|1186919_1188284_+	cobalt ABC transporter ATPase component, CbiO	NA	A0A2H4PQG7	Staphylococcus_phage	26.9	9.6e-12
VFI52008.1|1188738_1188897_-|transposase	transposase	transposase	NA	NA	NA	NA
VFI52009.1|1188967_1189345_-|transposase	transposase	transposase	NA	NA	NA	NA
VFI52011.1|1189721_1190027_-|transposase	transposase	transposase	NA	NA	NA	NA
VFI52013.1|1190404_1190728_-|transposase	IS66-Spn1 transposase	transposase	NA	NA	NA	NA
>prophage 10
LR216067	Streptococcus pneumoniae isolate b04a6400-1f66-11e7-b93e-3c4a9275d6c8 genome assembly, chromosome: 1	2074160	1199253	1205032	2074160		Streptococcus_phage(50.0%)	9	NA	NA
VFI52032.1|1199253_1199865_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.4	4.9e-16
VFI52034.1|1199909_1200638_+	TrmH family RNA methyltransferase group 3	NA	NA	NA	NA	NA
VFI52036.1|1200676_1201588_-	thioredoxin reductase	NA	G3MA85	Bacillus_virus	51.8	4.5e-90
VFI52038.1|1201653_1201878_-	membrane associated protein	NA	NA	NA	NA	NA
VFI52040.1|1201955_1202699_-	aspartate/glutamate ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	27.4	1.6e-13
VFI52042.1|1202698_1203499_-	aspartate/glutamate ABC transporter permease	NA	NA	NA	NA	NA
VFI52044.1|1203656_1204013_-	ArsC family protein	NA	M1PLC0	Streptococcus_phage	57.3	1.2e-33
VFI52045.1|1204025_1204538_-	O6-methylguanine-DNA methyltransferase	NA	M1PFU9	Streptococcus_phage	55.6	1.3e-46
VFI52047.1|1204537_1205032_-	acetyltransferase, GNAT family protein	NA	M1PSC3	Streptococcus_phage	52.1	1.4e-42
>prophage 11
LR216067	Streptococcus pneumoniae isolate b04a6400-1f66-11e7-b93e-3c4a9275d6c8 genome assembly, chromosome: 1	2074160	1212933	1247997	2074160	transposase,bacteriocin,tRNA	Staphylococcus_phage(16.67%)	36	NA	NA
VFI52067.1|1212933_1214970_-|tRNA	glycyl-tRNA synthetase beta subunit	tRNA	NA	NA	NA	NA
VFI52069.1|1215181_1216099_-|tRNA	glycyl-tRNA synthetase alpha subunit	tRNA	NA	NA	NA	NA
VFI52071.1|1216469_1216859_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI52073.1|1216840_1217230_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI52075.1|1217502_1218345_-	2,5-diketo-D-gluconic acid reductase A	NA	A0A2H4PQR8	Staphylococcus_phage	40.2	1.3e-51
VFI52077.1|1218458_1219901_-	peptidoglycan N-acetylglucosamine deacetylase A	NA	NA	NA	NA	NA
VFI52079.1|1220195_1220438_-	ribose-phosphate pyrophosphokinase	NA	NA	NA	NA	NA
VFI52081.1|1220694_1221672_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
VFI52083.1|1221668_1222751_+	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	31.3	2.4e-37
VFI52085.1|1222948_1223302_-|transposase	transposase	transposase	NA	NA	NA	NA
VFI52087.1|1223380_1224709_-|transposase	IS3-Spn1, transposase	transposase	A0A1B1P773	Bacillus_phage	48.1	1.9e-57
VFI52089.1|1224705_1225044_-|transposase	degenerate transposase	transposase	NA	NA	NA	NA
VFI52091.1|1225690_1226887_-	elongation factor Tu	NA	A0A076FFS6	Aureococcus_anophage	29.6	7.3e-32
VFI52094.1|1227808_1228678_-	glycerol facilitator-aquaporin	NA	NA	NA	NA	NA
VFI52097.1|1228900_1229422_-	putative sortase-sorted surface anchored protein (pseudogene)	NA	NA	NA	NA	NA
VFI52100.1|1229393_1229987_-	putative sortase-sorted surface anchored protein (pseudogene)	NA	NA	NA	NA	NA
VFI52102.1|1229974_1230484_-	putative sortase-sorted surface anchored protein (pseudogene)	NA	NA	NA	NA	NA
VFI52105.1|1230594_1230849_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI52108.1|1231188_1231722_-|transposase	degenerate transposase	transposase	NA	NA	NA	NA
VFI52111.1|1232267_1233986_+	phosphoglucomutase	NA	A0A1X9I671	Streptococcus_phage	83.2	1.2e-272
VFI52114.1|1234096_1234444_+|bacteriocin	thioredoxin, bacteriocin transport accessory protein	bacteriocin	NA	NA	NA	NA
VFI52117.1|1234721_1235558_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
VFI52120.1|1235570_1236200_-	amino acid ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.3	1.2e-28
VFI52123.1|1236209_1236851_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
VFI52126.1|1236996_1238226_-	TPR domain protein	NA	NA	NA	NA	NA
VFI52129.1|1238215_1239382_-	transport protein	NA	NA	NA	NA	NA
VFI52132.1|1239525_1240539_+	3-carboxymuconate cyclase	NA	NA	NA	NA	NA
VFI52135.1|1240583_1241003_-	proton-translocating ATPase, F1 sector, epsilon-subunit	NA	NA	NA	NA	NA
VFI52138.1|1241013_1242420_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
VFI52141.1|1242505_1243384_-	proton-translocating ATPase, F1 sector, gamma-subunit	NA	NA	NA	NA	NA
VFI52144.1|1243399_1244905_-	ATP synthase subunit alpha	NA	NA	NA	NA	NA
VFI52145.1|1244919_1245456_-	proton-translocating ATPase, F1 sector, delta-subunit	NA	NA	NA	NA	NA
VFI52148.1|1245455_1245950_-	proton-translocating ATPase, F0 sector, subunit b	NA	NA	NA	NA	NA
VFI52151.1|1245963_1246680_-	ATP synthase F0 subunit A	NA	NA	NA	NA	NA
VFI52154.1|1246714_1246915_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
VFI52157.1|1247598_1247997_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 12
LR216067	Streptococcus pneumoniae isolate b04a6400-1f66-11e7-b93e-3c4a9275d6c8 genome assembly, chromosome: 1	2074160	1298166	1345020	2074160	transposase,integrase,tRNA,protease	Streptococcus_phage(31.58%)	52	1288920:1288936	1356342:1356358
1288920:1288936	attL	TTTATACTCAATGAAAA	NA	NA	NA	NA
VFI52282.1|1298166_1299351_-|tRNA	tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	31.9	6.8e-38
VFI52285.1|1299362_1300130_-	dihydrodipicolinate reductase	NA	NA	NA	NA	NA
VFI52288.1|1300395_1301244_-	DegV family protein	NA	NA	NA	NA	NA
VFI52290.1|1301245_1301620_-|transposase	transposase	transposase	NA	NA	NA	NA
VFI52293.1|1301693_1303046_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
VFI52296.1|1303069_1303849_-	lipoprotein, putative	NA	NA	NA	NA	NA
VFI52298.1|1303835_1304693_-	DNA integrity scanning protein DisA	NA	NA	NA	NA	NA
VFI52301.1|1304828_1305797_+	thioredoxin reductase	NA	Q9JRK7	Streptococcus_phage	98.4	1.2e-64
VFI52304.1|1305830_1306742_-	putative sporulation transcription regulator whiA	NA	Q7AWZ3	Streptococcus_phage	99.7	1.5e-154
VFI52307.1|1306738_1307716_-	transporter	NA	A1IMD5	Streptococcus_phage	100.0	1.2e-184
VFI52310.1|1307712_1308603_-	P-loop-containing kinase	NA	A0A0R8VB27	Thermobifida_phage	29.8	3.9e-06
VFI52313.1|1308654_1309035_-	endoribonuclease L-PSP	NA	NA	NA	NA	NA
VFI52316.1|1309045_1309633_-	ribosome biogenesis GTP-binding protein YsxC	NA	NA	NA	NA	NA
VFI52320.1|1309641_1310874_-|protease	ATP-dependent Clp protease, ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	59.0	4.2e-131
VFI52323.1|1310905_1311076_-	membrane associated protein	NA	NA	NA	NA	NA
VFI52326.1|1311075_1311582_-	dihydrofolate reductase	NA	G3MBI7	Bacillus_virus	42.5	6.7e-27
VFI52328.1|1311711_1312230_-	DPS family peroxide resistance protein	NA	NA	NA	NA	NA
VFI52331.1|1312726_1314232_-	1,4-beta-N-acetylmuramidase	NA	NA	NA	NA	NA
VFI52334.1|1314269_1315028_-	triosephosphate isomerase	NA	NA	NA	NA	NA
VFI52337.1|1315125_1315803_-	DNA replication protein	NA	A0A1X9I617	Streptococcus_phage	41.3	2.9e-09
VFI52340.1|1315811_1316756_-	homoserine O-succinyltransferase	NA	NA	NA	NA	NA
VFI52343.1|1316937_1317450_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	47.3	9.1e-32
VFI52346.1|1317536_1318295_-	methyltransferase type 11	NA	NA	NA	NA	NA
VFI52349.1|1318795_1319926_-	sugar ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.2	4.7e-20
VFI52352.1|1320253_1320559_+|transposase	degenerate transposase	transposase	A0A1S5SBP9	Streptococcus_phage	98.9	1.6e-44
VFI52355.1|1320521_1321049_+|transposase	IS1167, transposase	transposase	A0A1S5SBP9	Streptococcus_phage	97.7	2.0e-90
VFI52358.1|1321338_1321914_-	amidases related to nicotinamidase	NA	G3MA16	Bacillus_virus	35.9	3.3e-22
VFI52361.1|1321913_1322702_-	GTP-sensing transcriptional pleiotropic repressor	NA	NA	NA	NA	NA
VFI52364.1|1322965_1324570_-	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	36.8	2.5e-59
VFI52367.1|1324768_1325995_-	major facilitator; oxalate:formate antiporter	NA	NA	NA	NA	NA
VFI52370.1|1326187_1327504_+	oxidoreductase, pyridine nucleotide-disulfide class I, Mercury (II) reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	44.1	2.2e-98
VFI52373.1|1327602_1328946_+	UDP-N-acetylmuramyl tripeptide synthetase, Mur ligase	NA	NA	NA	NA	NA
VFI52376.1|1328945_1329728_+	cobyric acid synthase	NA	NA	NA	NA	NA
VFI52379.1|1329853_1330936_+	X-Pro dipeptidase	NA	NA	NA	NA	NA
VFI52382.1|1331390_1331852_-	integral membrane protein	NA	NA	NA	NA	NA
VFI52385.1|1331829_1332603_-	phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
VFI52388.1|1332592_1333342_-|tRNA	tRNA pseudouridine synthase A	tRNA	NA	NA	NA	NA
VFI52391.1|1333658_1334810_-	major facilitator superfamily transporter-efflux	NA	NA	NA	NA	NA
VFI52394.1|1335049_1335679_-	membrane protein	NA	NA	NA	NA	NA
VFI52397.1|1335681_1336020_-	phnA protein	NA	NA	NA	NA	NA
VFI52400.1|1336150_1336822_-	cytidylate kinase	NA	NA	NA	NA	NA
VFI52403.1|1336830_1337307_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
VFI52406.1|1337352_1337565_+	ferredoxin	NA	NA	NA	NA	NA
VFI52409.1|1337615_1338599_-	glycosil transferase	NA	V5USA4	Oenococcus_phage	49.5	1.5e-75
VFI52412.1|1338582_1339602_-	UDP-glucose 4-epimerase	NA	A0A2K9L5H6	Tupanvirus	48.5	4.7e-88
VFI52415.1|1339992_1341096_-	oxidoreductase, DadA family protein	NA	NA	NA	NA	NA
VFI52418.1|1341112_1341910_-	NIF3 (NGG1p interacting factor 3) family protein	NA	NA	NA	NA	NA
VFI52421.1|1341896_1342574_-	Bcl-2 family protein	NA	NA	NA	NA	NA
VFI52424.1|1342930_1343035_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI52427.1|1343121_1344114_+	serine/threonine protein kinase	NA	NA	NA	NA	NA
VFI52430.1|1344187_1344373_-|transposase	transposase OrfB	transposase	A0A1B1P773	Bacillus_phage	61.4	2.3e-09
VFI52433.1|1344369_1345020_-|integrase	integrase core domain-containing protein	integrase	A0A1B1P773	Bacillus_phage	43.0	7.2e-34
1356342:1356358	attR	TTTATACTCAATGAAAA	NA	NA	NA	NA
>prophage 13
LR216067	Streptococcus pneumoniae isolate b04a6400-1f66-11e7-b93e-3c4a9275d6c8 genome assembly, chromosome: 1	2074160	1565655	1601525	2074160	transposase,integrase,holin	Streptococcus_phage(21.43%)	39	1600757:1600771	1602530:1602544
VFI53096.1|1565655_1567176_-|holin	choline transporter	holin	NA	NA	NA	NA
VFI53099.1|1567168_1567897_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	41.2	9.0e-33
VFI53102.1|1567911_1568676_-	lipoprotein	NA	NA	NA	NA	NA
VFI53105.1|1568679_1569123_-	transcriptional regulator, MarR family	NA	NA	NA	NA	NA
VFI53108.1|1569804_1570101_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI53111.1|1570122_1571187_-	glutamyl aminopeptidase	NA	NA	NA	NA	NA
VFI53114.1|1571587_1572289_+	putative UDP-glucose 4-epimerase	NA	A0A1V0SG19	Hokovirus	33.3	1.3e-28
VFI53117.1|1572711_1573671_+	iron-compound ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	40.8	4.0e-57
VFI53120.1|1573660_1574617_+	ferric iron ABC transporter membrane-spanning permease	NA	NA	NA	NA	NA
VFI53123.1|1574613_1575366_+	ferrichrome transport ATP-binding protein FhuC	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	28.1	5.6e-14
VFI53126.1|1575461_1576427_+	iron-compound ABC transporter iron-compound-binding protein	NA	NA	NA	NA	NA
VFI53129.1|1576651_1576894_-	alpha-hemolysin family protein	NA	A0A2H4PQM5	Staphylococcus_phage	58.0	1.0e-17
VFI53132.1|1576893_1577616_-	ribosomal large subunit pseudouridine synthase B	NA	NA	NA	NA	NA
VFI53135.1|1577602_1578172_-	segregation and condensation protein B	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	34.9	5.0e-15
VFI53138.1|1578190_1578919_-	segregation and condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	22.3	5.3e-09
VFI53141.1|1578918_1579653_-|integrase	integrase	integrase	NA	NA	NA	NA
VFI53144.1|1579649_1580111_-	CBS domain-containing protein	NA	NA	NA	NA	NA
VFI53147.1|1580107_1580629_-	phosphodiesterase, family	NA	NA	NA	NA	NA
VFI53149.1|1580604_1581576_-	deoxyribonucleotide triphosphate pyrophosphatase/uncharacterised domain fusion protein	NA	C4N227	Ugandan_cassava_brown_streak_virus	29.9	4.9e-10
VFI53152.1|1581572_1582367_-	glutamate racemase, COG0796	NA	NA	NA	NA	NA
VFI53155.1|1582573_1582822_-	family protein	NA	NA	NA	NA	NA
VFI53159.1|1583077_1584703_-	alpha,alpha-phosphotrehalase	NA	NA	NA	NA	NA
VFI53162.1|1584880_1586848_-	trehalose PTS system, IIABC components	NA	NA	NA	NA	NA
VFI53165.1|1587032_1587743_+	trehalose operon repressor	NA	NA	NA	NA	NA
VFI53168.1|1588159_1588417_+|transposase	degenerate transposase	transposase	A0A1S5SBP9	Streptococcus_phage	95.7	5.6e-30
VFI53171.1|1588413_1588701_+|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	71.8	8.7e-24
VFI53174.1|1588697_1589225_+|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	94.9	2.9e-89
VFI53176.1|1589309_1590512_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
VFI53179.1|1590884_1591115_-	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
VFI53182.1|1591282_1591927_-	pyroglutamyl-peptidase I	NA	NA	NA	NA	NA
VFI53185.1|1591941_1592865_-	permease	NA	NA	NA	NA	NA
VFI53188.1|1592861_1593551_-	permease	NA	NA	NA	NA	NA
VFI53191.1|1593615_1594320_-	extracellular oligopeptide-binding protein	NA	NA	NA	NA	NA
VFI53194.1|1594375_1595398_-	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
VFI53197.1|1595529_1597965_-	topoisomerase IV subunit A, ParC	NA	G3M9Z5	Bacillus_virus	31.3	4.3e-95
VFI53200.1|1598313_1598421_-	N-6 DNA methylase	NA	NA	NA	NA	NA
VFI53202.1|1598420_1600364_-	topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	42.7	1.2e-124
VFI53206.1|1600499_1601141_+	putative glycerol-3-phosphate acyltransferase PlsY	NA	NA	NA	NA	NA
1600757:1600771	attL	TTTGGCTGTTATCGG	NA	NA	NA	NA
VFI53209.1|1601183_1601525_-|integrase	integrase core domain-containing protein	integrase	A0A2I6AZV9	Macacine_betaherpesvirus	51.3	4.2e-25
VFI53209.1|1601183_1601525_-|integrase	integrase core domain-containing protein	integrase	A0A2I6AZV9	Macacine_betaherpesvirus	51.3	4.2e-25
1602530:1602544	attR	CCGATAACAGCCAAA	NA	NA	NA	NA
>prophage 14
LR216067	Streptococcus pneumoniae isolate b04a6400-1f66-11e7-b93e-3c4a9275d6c8 genome assembly, chromosome: 1	2074160	1690017	1797700	2074160	transposase,tRNA,bacteriocin,protease	Bacillus_phage(17.86%)	108	NA	NA
VFI53422.1|1690017_1690407_-|transposase	transposase	transposase	NA	NA	NA	NA
VFI53424.1|1690440_1690824_-	Mobile element protein	NA	NA	NA	NA	NA
VFI53427.1|1690831_1691134_-	PTS system galactose-specific transporter subunit IIB	NA	NA	NA	NA	NA
VFI53430.1|1691171_1691561_-	PTS system transporter subunit IIA	NA	NA	NA	NA	NA
VFI53433.1|1691827_1692025_+	N-ethylammeline chlorohydrolase	NA	NA	NA	NA	NA
VFI53436.1|1692105_1693929_-	GTP-binding protein LepA	NA	A0A2K9L2P9	Tupanvirus	41.0	2.9e-19
VFI53439.1|1694007_1694736_-	serine/threonine protein phosphatase	NA	A0A1V0EC57	Caulobacter_phage	33.0	1.9e-14
VFI53442.1|1694737_1696405_-	DNA repair protein RecN	NA	NA	NA	NA	NA
VFI53445.1|1696411_1696804_-	transcriptional repressor protein	NA	NA	NA	NA	NA
VFI53448.1|1696835_1697651_-	rRNA methylase	NA	NA	NA	NA	NA
VFI53451.1|1697643_1698519_-	farnesyl diphosphate synthase	NA	NA	NA	NA	NA
VFI53454.1|1698515_1698728_-	exodeoxyribonuclease VII, small subunit	NA	NA	NA	NA	NA
VFI53457.1|1698705_1700046_-	exodeoxyribonuclease VII large subunit	NA	A0A1B3AYB4	Gordonia_phage	33.8	1.1e-33
VFI53460.1|1700173_1700812_-	uridine kinase	NA	A0A1V0SAA3	Catovirus	39.9	8.4e-35
VFI53463.1|1700919_1701222_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
VFI53466.1|1701218_1701314_-|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
VFI53469.1|1701462_1702341_-|tRNA	tRNA pseudouridine synthase B	tRNA	NA	NA	NA	NA
VFI53471.1|1702350_1703625_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VFI53474.1|1703720_1704836_-	O-acetylhomoserine sulfhydrylase	NA	NA	NA	NA	NA
VFI53477.1|1704857_1704980_-	O-acetylhomoserine sulfhydrylase	NA	NA	NA	NA	NA
VFI53480.1|1705127_1705925_-	formate/nitrate transporter	NA	NA	NA	NA	NA
VFI53483.1|1706168_1706912_-	sortase SrtA	NA	NA	NA	NA	NA
VFI53486.1|1706911_1709380_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	35.5	3.5e-105
VFI53489.1|1709573_1710560_+	L-lactate dehydrogenase 1	NA	NA	NA	NA	NA
VFI53492.1|1710869_1714124_-	type II restriction endonuclease	NA	NA	NA	NA	NA
VFI53495.1|1714288_1716160_-	type II restriction endonuclease	NA	A0A1V0SF91	Hokovirus	25.1	9.7e-15
VFI53498.1|1716234_1716498_-	cytotoxic translational repressor of toxin-antitoxin stability system	NA	NA	NA	NA	NA
VFI53500.1|1716490_1716733_-	toxin-antitoxin system, antitoxin component, ribbon-helix-helix fold protein	NA	NA	NA	NA	NA
VFI53503.1|1716823_1717633_-	metallo-beta-lactamase superfamily protein	NA	A0A0C5AFC1	Paenibacillus_phage	39.0	1.8e-34
VFI53506.1|1717634_1718984_-	histidine kinase	NA	W8CYF6	Bacillus_phage	34.6	1.8e-34
VFI53509.1|1718976_1719681_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	39.8	2.8e-39
VFI53512.1|1719735_1720911_-	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
VFI53515.1|1721238_1722909_-	formate-tetrahydrofolate ligase	NA	NA	NA	NA	NA
VFI53518.1|1723138_1723828_+	phosphopantothenate--cysteine ligase	NA	NA	NA	NA	NA
VFI53521.1|1723839_1724391_+	flavoprotein involved in panthothenate metabolism	NA	A0A068EHP1	Penguinpox_virus	37.6	3.1e-25
VFI53524.1|1724374_1724938_+	membrane protein	NA	NA	NA	NA	NA
VFI53527.1|1725201_1725729_+	membrane protein	NA	NA	NA	NA	NA
VFI53530.1|1725740_1726256_+	transcriptional regulator	NA	NA	NA	NA	NA
VFI53533.1|1726252_1726720_-	MutT/nudix family protein	NA	NA	NA	NA	NA
VFI53535.1|1726793_1727282_-	acetyltransferase, gnat family	NA	NA	NA	NA	NA
VFI53538.1|1727247_1727775_-	acetyltransferase	NA	NA	NA	NA	NA
VFI53541.1|1727820_1729809_-	excinuclease ABC subunit B	NA	NA	NA	NA	NA
VFI53544.1|1729885_1730839_-|protease	caax amino protease family protein	protease	NA	NA	NA	NA
VFI53547.1|1731011_1733177_+	glutamine ABC transporter permease	NA	NA	NA	NA	NA
VFI53550.1|1733176_1733917_+	phosphate ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	27.3	3.7e-18
VFI53553.1|1734065_1735553_+	glucose-6-phosphate 1-dehydrogenase	NA	H6WFS4	Cyanophage	32.8	7.1e-69
VFI53556.1|1735712_1736231_+|transposase	IS1167 transposase	transposase	A0A1S5SBP9	Streptococcus_phage	89.8	3.2e-77
VFI53559.1|1736227_1736515_+|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	74.1	2.3e-24
VFI53562.1|1736511_1737039_+|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	95.4	1.9e-88
VFI53565.1|1737137_1738760_-	chaperone GroEL	NA	A0A219YK78	uncultured_virus	56.1	2.3e-153
VFI53568.1|1738775_1739060_-	CH10_SMI 10 kDa chaperonin (protein Cpn10)	NA	NA	NA	NA	NA
VFI53571.1|1739215_1739611_-	single-strand DNA-binding protein B	NA	A1EAD1	Streptococcus_phage	45.5	4.0e-27
VFI53574.1|1739688_1740450_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
VFI53577.1|1740491_1741118_-|tRNA	phenylalanyl-tRNA synthetase, beta subunit	tRNA	NA	NA	NA	NA
VFI53580.1|1741133_1741451_-	thioredoxin family protein	NA	NA	NA	NA	NA
VFI53583.1|1741447_1741747_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI53586.1|1742383_1743058_-	putative uncharacterized conserved secreted protein	NA	NA	NA	NA	NA
VFI53589.1|1743063_1743510_-	transcriptional regulator	NA	NA	NA	NA	NA
VFI53592.1|1743623_1744127_-	membrane-associated phospholipid phosphatase	NA	NA	NA	NA	NA
VFI53595.1|1744123_1744486_-	Lin0147	NA	NA	NA	NA	NA
VFI53598.1|1744728_1745583_-	multidrug resistance protein 3	NA	W8CYL7	Bacillus_phage	28.9	4.7e-17
VFI53601.1|1745589_1746411_-	ABC transporter, ATP-binding protein, multidrug export	NA	NA	NA	NA	NA
VFI53604.1|1746449_1746899_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
VFI53607.1|1747022_1747739_-	glucose-1-phosphate adenylyl transferase	NA	NA	NA	NA	NA
VFI53610.1|1748619_1750035_-	pneumolysin	NA	NA	NA	NA	NA
VFI53613.1|1750045_1750456_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI53616.1|1750448_1751057_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI53619.1|1751069_1751528_-	membrane protein	NA	NA	NA	NA	NA
VFI53622.1|1751652_1751784_+	mobile genetic element	NA	NA	NA	NA	NA
VFI53625.1|1752544_1753405_+	glycerophosphoryl diester phosphodiesterase	NA	NA	NA	NA	NA
VFI53628.1|1753388_1754450_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
VFI53631.1|1754466_1755471_+	ferric cations import ATP-binding protein FbpC	NA	Q6GZ03	Mycoplasma_phage	36.4	1.4e-20
VFI53634.1|1755482_1757177_+	binding-protein-dependent transport systems inner membrane component	NA	NA	NA	NA	NA
VFI53637.1|1757178_1757880_+	MgtC/SapB transporter	NA	G3MA03	Bacillus_virus	46.4	1.6e-23
VFI53640.1|1757926_1758526_+	hydrolase	NA	NA	NA	NA	NA
VFI53643.1|1758535_1760563_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
VFI53645.1|1760721_1761120_+|transposase	transposase-like protein, IS1381 ISSpn7	transposase	NA	NA	NA	NA
VFI53648.1|1761136_1761589_+|transposase	transposase	transposase	NA	NA	NA	NA
VFI53651.1|1762155_1763112_-	autolysin	NA	A0A1S5SE15	Streptococcus_phage	95.9	2.7e-154
VFI53654.1|1763487_1764858_-	damage inducible DinF protein	NA	NA	NA	NA	NA
VFI53657.1|1765163_1766330_-	protein RecA	NA	A0A0S2MVG1	Bacillus_phage	61.7	3.5e-119
VFI53660.1|1766384_1767641_-	damage inducible protein CinA	NA	NA	NA	NA	NA
VFI53663.1|1767725_1768742_-	regulator of lytrabc operon	NA	NA	NA	NA	NA
VFI53666.1|1768749_1769268_-	GNAT family acetyltransferase	NA	NA	NA	NA	NA
VFI53669.1|1769257_1769701_-	putative ATPase	NA	NA	NA	NA	NA
VFI53671.1|1769786_1770407_-	lipoprotein, putative	NA	NA	NA	NA	NA
VFI53674.1|1770789_1771653_-	transcriptional regulator	NA	NA	NA	NA	NA
VFI53677.1|1771844_1772015_+	secreted protein	NA	NA	NA	NA	NA
VFI53679.1|1772117_1772342_+	type 2 lantibiotic, SP_1948 family	NA	NA	NA	NA	NA
VFI53682.1|1772348_1772537_+	type 2 lantibiotic, SP_1948 family	NA	NA	NA	NA	NA
VFI53685.1|1772654_1775645_+	lantibiotic modifying enzyme	NA	NA	NA	NA	NA
VFI53688.1|1775994_1776699_+	putative reductase	NA	NA	NA	NA	NA
VFI53691.1|1776679_1777609_+|protease	Zn-dependent proteases	protease	NA	NA	NA	NA
VFI53694.1|1777605_1779714_+|bacteriocin	bacteriocin secretion/processing ATP-binding protein	bacteriocin	W8CYL7	Bacillus_phage	27.7	2.2e-23
VFI53697.1|1779737_1781477_+|protease	lantibiotic leader peptide processing serine protease	protease	A0A2H4PQH1	Staphylococcus_phage	39.5	4.2e-52
VFI53700.1|1781527_1782295_+|bacteriocin	bacteriocin-associated integral membrane protein	bacteriocin	NA	NA	NA	NA
VFI53703.1|1782296_1782929_+	antimicrobial peptide ABC transporter ATPase	NA	G3M9Y6	Bacillus_virus	33.3	2.8e-22
VFI53705.1|1783086_1783248_+	competence damage-inducible protein A	NA	NA	NA	NA	NA
VFI53708.1|1783845_1783935_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI53711.1|1783873_1784287_-	nucleoside diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.8e-23
VFI53714.1|1784397_1788075_-	DNA-directed RNA polymerase subunit beta'	NA	R4TQM7	Phaeocystis_globosa_virus	25.0	1.8e-65
VFI53717.1|1788107_1791719_-	DNA-directed RNA polymerase subunit beta	NA	A0A2P0VMZ3	Tetraselmis_virus	26.4	1.2e-40
VFI53720.1|1792402_1793734_-	CBS domain membrane protein	NA	NA	NA	NA	NA
VFI53723.1|1794023_1794848_-	DNA-entry nuclease (competence-specific nuclease)	NA	NA	NA	NA	NA
VFI53726.1|1794886_1795081_-	competence associated protein	NA	NA	NA	NA	NA
VFI53729.1|1795067_1796351_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
VFI53732.1|1796374_1796572_-	membrane protein	NA	NA	NA	NA	NA
VFI53735.1|1796662_1797700_-|protease	ATP-dependent protease La	protease	NA	NA	NA	NA
>prophage 15
LR216067	Streptococcus pneumoniae isolate b04a6400-1f66-11e7-b93e-3c4a9275d6c8 genome assembly, chromosome: 1	2074160	2057001	2065755	2074160	protease	Streptococcus_phage(33.33%)	9	NA	NA
VFI54459.1|2057001_2057841_-	cobalt ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.6	1.1e-13
VFI54462.1|2057825_2058653_-	ABCtransporter ATP-binding protein cobalt transport	NA	W8CYL7	Bacillus_phage	33.3	3.5e-17
VFI54465.1|2058649_2059195_-	phosphatidylglycerophosphate synthase	NA	NA	NA	NA	NA
VFI54468.1|2059205_2060027_-	transcriptional regulation protein	NA	NA	NA	NA	NA
VFI54471.1|2060068_2061352_-|protease	zinc-dependent protease	protease	A0A1E1EST3	Acanthamoeba_castellanii_mimivirus	30.0	8.4e-18
VFI54473.1|2061348_2062599_-|protease	zinc-dependent protease	protease	A0A1X9I714	Streptococcus_phage	42.3	6.0e-93
VFI54476.1|2062757_2063126_+	S4 domain-containing protein YaaA	NA	A0A1X9I5V8	Streptococcus_phage	57.3	7.0e-18
VFI54479.1|2063128_2064226_+	recombination protein recF	NA	NA	NA	NA	NA
VFI54482.1|2064276_2065755_-	inosine-5-monophosphate dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	2.2e-94
