The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR216064	Streptococcus pneumoniae isolate 569492b0-41bd-11e5-998e-3c4a9275d6c6 genome assembly, chromosome: 1	2066251	771	36881	2066251	transposase,integrase,bacteriocin	Streptococcus_phage(56.52%)	42	958:1017	14574:14645
VFI36932.1|771_978_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	91.2	7.9e-27
958:1017	attL	AGAAGTTTCAGCGACCATCATTTTTGAACAGTGATAGCACTTGAATCGACGCTTTCTAAG	NA	NA	NA	NA
VFI36938.1|1294_1531_+	recombination regulator RecX	NA	NA	NA	NA	NA
VFI36944.1|1719_3048_+	adenylosuccinate synthetase	NA	L7Y4J5	Megavirus	37.1	3.6e-72
VFI36950.1|3248_3716_+	cytidine/deoxycytidylate deaminase	NA	NA	NA	NA	NA
VFI36956.1|3924_5067_-|integrase	integrase	integrase	U4KJ82	Streptococcus_phage	99.5	1.7e-211
VFI36962.1|5121_6192_-	type I restriction enzyme related protein	NA	A0A1S5SAB0	Streptococcus_phage	97.8	2.9e-181
VFI36968.1|6208_6589_-	Phage protein	NA	A0A1S5SBG5	Streptococcus_phage	98.4	1.7e-67
VFI36974.1|6601_6865_-	plasmid stabilisation system protein	NA	A0A1S5S8E8	Streptococcus_phage	100.0	1.2e-43
VFI36980.1|6864_7098_-	Uncharacterised protein	NA	A0A1S5S8D5	Streptococcus_phage	96.1	8.9e-35
VFI36986.1|7097_7466_-	phage DNA-binding protein	NA	A0A1S5SBE7	Streptococcus_phage	100.0	1.4e-63
VFI36993.1|7762_7894_+	Uncharacterised protein	NA	A0A1S5SEU2	Streptococcus_phage	100.0	2.2e-11
VFI36999.1|8183_8375_+	DNA-binding protein	NA	A0A141DZR9	Streptococcus_phage	100.0	3.0e-28
VFI37005.1|8397_8601_+	Phage protein	NA	A0A141E1R6	Streptococcus_phage	95.5	1.3e-29
VFI37011.1|8615_8759_+	Uncharacterised protein	NA	Q708Q9	Streptococcus_phage	91.5	3.4e-21
VFI37017.1|8755_8923_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI37023.1|8993_9308_+	lytic amidase (N-acetylmuramoyl-L-alanine amidase)	NA	A0A1S5SCT0	Streptococcus_phage	81.7	8.1e-23
VFI37029.1|9581_10025_+	deoxyuridine 5'-triphosphate nucleotidohydrolase	NA	Q2WG49	Clostridium_botulinum_D_phage	46.0	6.9e-28
VFI37035.1|9984_10542_+	phosphoglycerate mutase family protein	NA	NA	NA	NA	NA
VFI37041.1|10654_11917_+	DNA repair protein	NA	NA	NA	NA	NA
VFI37047.1|11989_12487_+	carbonic anhydrase	NA	NA	NA	NA	NA
VFI37053.1|12511_13327_+	repair protein	NA	NA	NA	NA	NA
VFI37059.1|13471_14440_+	ribose-phosphate pyrophosphokinase	NA	A0A1V0SHF7	Hokovirus	34.7	4.0e-44
VFI37065.1|14375_14855_-|transposase	transposase-like protein	transposase	A0A1S5SBP9	Streptococcus_phage	87.1	3.7e-43
14574:14645	attR	AGAAGTTTCAGCGACCATCATTTTTGAACAGTGATAGCACTTGAATCGACGCTTTCTAAGGAGAATTCTAGT	NA	NA	NA	NA
VFI37071.1|14981_15215_-	adenylosuccinate lyase	NA	NA	NA	NA	NA
VFI37077.1|15538_15796_-|transposase	nuclease family transposase	transposase	NA	NA	NA	NA
VFI37083.1|16108_18778_+	DNA polymerase I - 3'-5' exonuclease and polymerase domains	NA	A0A218MKQ4	uncultured_virus	30.1	1.7e-57
VFI37087.1|18862_19300_+	CoA-binding protein	NA	NA	NA	NA	NA
VFI37093.1|19340_19589_+	chlorohydrolase	NA	NA	NA	NA	NA
VFI37099.1|19617_20628_-	membrane protein	NA	NA	NA	NA	NA
VFI37105.1|20776_21946_+	aspartate aminotransferase	NA	NA	NA	NA	NA
VFI37111.1|21942_22713_+	DNA repair protein RecO	NA	NA	NA	NA	NA
VFI37117.1|22709_23702_+	fatty acid/phospholipid synthesis protein	NA	NA	NA	NA	NA
VFI37123.1|23707_23941_+	acyl carrier protein	NA	NA	NA	NA	NA
VFI37129.1|24480_24711_+|bacteriocin	bacteriocin BlpO	bacteriocin	NA	NA	NA	NA
VFI37135.1|24713_24839_+|bacteriocin	bacteriocin BlpO	bacteriocin	NA	NA	NA	NA
VFI37141.1|25425_27579_+	competence factor transporting ATP-binding protein/permease ComA	NA	W8CYL7	Bacillus_phage	28.0	4.0e-44
VFI37147.1|27591_28941_+	competence factor transport protein ComB	NA	NA	NA	NA	NA
VFI37154.1|29110_29818_+	phosphoribosylaminoimidazole-succinocarboxamide synthetase	NA	A0A1D8KNF0	Synechococcus_phage	39.2	1.0e-41
VFI37160.1|30019_33745_+	phosphoribosylformylglycinamidine synthase II (FGAM synthetase)	NA	A6N228	Microbacterium_phage	25.8	1.6e-37
VFI37166.1|33837_35280_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	34.9	2.8e-54
VFI37173.1|35316_36339_+	phosphoribosylaminoimidazole synthetase	NA	A0A1D7SE90	Cyanophage	43.9	1.2e-64
VFI37180.1|36335_36881_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	34.4	1.7e-23
>prophage 2
LR216064	Streptococcus pneumoniae isolate 569492b0-41bd-11e5-998e-3c4a9275d6c6 genome assembly, chromosome: 1	2066251	88466	124118	2066251	transposase,tRNA,bacteriocin	Streptococcus_phage(50.0%)	37	NA	NA
VFI37469.1|88466_88754_+|bacteriocin	bacteriocin, putative	bacteriocin	NA	NA	NA	NA
VFI37476.1|88805_90914_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
VFI37486.1|90910_91552_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.8	4.3e-23
VFI37490.1|91758_92565_+	amino acid ABC transporter periplasmic amino acid-binding protein	NA	NA	NA	NA	NA
VFI37496.1|92581_93778_+	argininosuccinate synthase	NA	NA	NA	NA	NA
VFI37502.1|93801_94626_+	argininosuccinate lyase	NA	NA	NA	NA	NA
VFI37508.1|94914_95778_-	helix-turn-helix domain protein	NA	NA	NA	NA	NA
VFI37514.1|96243_98463_+	Bacteriocin ABC transoporter	NA	W8CYL7	Bacillus_phage	25.5	2.3e-39
VFI37520.1|98455_98923_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI37526.1|98919_100272_+	Secreted protein	NA	NA	NA	NA	NA
VFI37532.1|100417_100798_+	Membrane protein	NA	NA	NA	NA	NA
VFI37536.1|102045_102210_+	Membrane protein	NA	NA	NA	NA	NA
VFI37542.1|102377_102509_+	Membrane protein	NA	NA	NA	NA	NA
VFI37548.1|103340_103466_+	Membrane protein	NA	NA	NA	NA	NA
VFI37557.1|103446_103692_+|bacteriocin	putative bacteriocin	bacteriocin	NA	NA	NA	NA
VFI37563.1|103848_104907_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI37570.1|105220_106198_+	Leader peptidase	NA	NA	NA	NA	NA
VFI37576.1|106574_106949_+	Membrane protein	NA	NA	NA	NA	NA
VFI37582.1|107156_108059_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI37588.1|108114_108447_+	Membrane protein	NA	NA	NA	NA	NA
VFI37594.1|108443_109172_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI37600.1|110307_110547_+	Lmo2277 protein	NA	NA	NA	NA	NA
VFI37606.1|110531_110810_+	membrane associated protein	NA	M1Q0Z8	Streptococcus_phage	50.5	1.9e-20
VFI37612.1|111095_112985_+	Pneumococcal surface protein A	NA	NA	NA	NA	NA
VFI37618.1|113385_114507_+|tRNA	tRNA-specific 2-thiouridylase MnmA	tRNA	NA	NA	NA	NA
VFI37624.1|114647_115103_+	mutT/nudix family protein	NA	NA	NA	NA	NA
VFI37630.1|115112_117026_+|tRNA	tRNA uridine 5-carboxymethylaminomethyl modification protein GidA	tRNA	NA	NA	NA	NA
VFI37636.1|117404_119084_-	metallo-beta-lactamase superfamily protein 1	NA	NA	NA	NA	NA
VFI37643.1|119085_119319_-	transcriptional regulator	NA	NA	NA	NA	NA
VFI37649.1|119598_119814_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI37655.1|120136_120289_-|bacteriocin	bacteriocin-type signal sequence domain-containing protein	bacteriocin	NA	NA	NA	NA
VFI37661.1|120290_120476_-	excreted peptide	NA	NA	NA	NA	NA
VFI37667.1|120654_121338_+	molecular chaperone	NA	NA	NA	NA	NA
VFI37675.1|121334_121772_+	acetyltransferase	NA	NA	NA	NA	NA
VFI37681.1|121761_122772_+	O-sialoglycoprotein endopeptidase	NA	A0A291ATS8	Pandoravirus	36.9	5.6e-41
VFI37687.1|122811_123198_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	73.2	2.9e-46
VFI37693.1|123188_124118_-|transposase	IS1193, transposase, ISL3 family	transposase	A0A1S5SBP9	Streptococcus_phage	63.6	2.9e-92
>prophage 3
LR216064	Streptococcus pneumoniae isolate 569492b0-41bd-11e5-998e-3c4a9275d6c6 genome assembly, chromosome: 1	2066251	257146	310542	2066251	transposase,protease,integrase	Pneumococcus_phage(20.0%)	58	268590:268610	302677:302697
VFI38564.1|257146_257854_+|protease	caax amino protease family protein	protease	NA	NA	NA	NA
VFI38567.1|257978_258923_+	dihydropteroate synthase	NA	NA	NA	NA	NA
VFI38569.1|258924_260247_+	dihydrofolate synthetase	NA	NA	NA	NA	NA
VFI38577.1|260227_260782_+	GTP cyclohydrolase	NA	E7DN69	Pneumococcus_phage	43.8	3.7e-39
VFI38584.1|260824_261637_+	bifunctional folate synthesis protein	NA	NA	NA	NA	NA
VFI38591.1|261681_261999_-	Staphylococcal protein of uncharacterised function (DUF960)	NA	NA	NA	NA	NA
VFI38599.1|262355_262802_+	50S ribosomal protein L13	NA	NA	NA	NA	NA
VFI38606.1|262821_263214_+	SSU ribosomal protein S9p (S16e)	NA	NA	NA	NA	NA
VFI38614.1|263476_264355_-|integrase	integrase/recombinase, phage integrase family	integrase	NA	NA	NA	NA
VFI38621.1|264596_265286_-	FtsK/SpoIIIE family protein	NA	A0A1S5SFB5	Streptococcus_phage	29.7	9.8e-05
VFI38629.1|265372_265843_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI38636.1|265839_266730_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI38643.1|266932_268144_+	Uncharacterised protein	NA	NA	NA	NA	NA
268590:268610	attL	TATAGTAAAATGAAATAAGAA	NA	NA	NA	NA
VFI38650.1|268698_268920_-|integrase	integrase/recombinase, phage integrase family	integrase	NA	NA	NA	NA
VFI38657.1|269475_270684_-	ATPase	NA	NA	NA	NA	NA
VFI38664.1|270812_271160_+|transposase	IS630-Spn1, transposase Orf1	transposase	NA	NA	NA	NA
VFI38672.1|271829_273266_+	6-phospho-beta-glucosidase	NA	A0A0B5JD41	Pandoravirus	25.4	2.2e-27
VFI38679.1|273317_273557_+	glutathione synthetase	NA	NA	NA	NA	NA
VFI38686.1|273686_274001_+	PTS system cellobiose transporter subunit IIB	NA	NA	NA	NA	NA
VFI38693.1|274124_276098_+	PTS system transporter subunit IIB	NA	NA	NA	NA	NA
VFI38700.1|276107_276422_+	lichenan-specific phosphotransferase EIIA component	NA	NA	NA	NA	NA
VFI38707.1|276452_276959_+	PTS transporter	NA	NA	NA	NA	NA
VFI38715.1|277038_278385_+	PTS system transporter subunit IIC	NA	NA	NA	NA	NA
VFI38722.1|278764_278941_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI38729.1|278940_279066_+	filamentation induced by cAMP protein fic	NA	NA	NA	NA	NA
VFI38736.1|279342_281556_+	glycosyl hydrolase, family 31	NA	NA	NA	NA	NA
VFI38743.1|281777_282254_-	gluthatione peroxidase	NA	NA	NA	NA	NA
VFI38751.1|282463_283546_+	hyaluronidase	NA	NA	NA	NA	NA
VFI38758.1|283584_283920_+	hyaluronate lyase	NA	NA	NA	NA	NA
VFI38765.1|283882_285184_+	hyaluronidase	NA	NA	NA	NA	NA
VFI38772.1|285205_285670_+	hyaluronate lyase	NA	NA	NA	NA	NA
VFI38779.1|285933_286563_-	keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase	NA	NA	NA	NA	NA
VFI38786.1|286572_287574_-	carbohydrate kinase, PfkB family	NA	NA	NA	NA	NA
VFI38793.1|287604_288246_-	galactose-6-phosphate isomerase subunit LacB	NA	NA	NA	NA	NA
VFI38801.1|288264_289080_-	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
VFI38808.1|289350_289785_+	PTS system sugar-specific transporter subunit EII	NA	NA	NA	NA	NA
VFI38815.1|289796_290987_+	glucuronyl hydrolase	NA	NA	NA	NA	NA
VFI38822.1|290997_291489_+	N-acetylgalactosamine-specific phosphotransferase EIIB	NA	NA	NA	NA	NA
VFI38829.1|291503_292283_+	PTS system, N-acetylgalactosamine-specific IIC component	NA	NA	NA	NA	NA
VFI38836.1|292269_293088_+	PTS system transporter subunit IID	NA	NA	NA	NA	NA
VFI38843.1|293087_293381_+	preprotein translocase subunit YajC	NA	NA	NA	NA	NA
VFI38850.1|293402_295304_+	oligohyaluronate lyase	NA	NA	NA	NA	NA
VFI38852.1|295363_296365_+	sugar binding transcriptional regulator RegR	NA	NA	NA	NA	NA
VFI38860.1|296474_296810_-	membrane protein	NA	NA	NA	NA	NA
VFI38867.1|296820_297063_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI38874.1|297073_297328_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI38881.1|297335_297617_-	membrane protein	NA	NA	NA	NA	NA
VFI38888.1|297632_297827_-	transcriptional regulator	NA	I3VYZ1	Thermoanaerobacterium_phage	43.9	1.6e-05
VFI38896.1|297992_298943_+	S-adenosyl-methyltransferase mraW	NA	NA	NA	NA	NA
VFI38903.1|298954_299272_+	cell division protein FtsL	NA	NA	NA	NA	NA
VFI38911.1|299275_301528_+	penicillin-binding protein 2X	NA	NA	NA	NA	NA
VFI38918.1|301529_302510_+	UDP-phosphate-UDP-MurNAc-pentapeptide phospho-MurNAc-pentapeptide transferase	NA	NA	NA	NA	NA
VFI38925.1|303104_305210_+	Group II intron maturase	NA	H6X3M6	Enterobacteria_phage	37.7	1.3e-116
302677:302697	attR	TTCTTATTTCATTTTACTATA	NA	NA	NA	NA
VFI38933.1|306071_306554_-	S-ribosylhomocysteinase	NA	NA	NA	NA	NA
VFI38940.1|306648_308133_-|protease	ATP-dependent Zn protease	protease	NA	NA	NA	NA
VFI38947.1|308285_309893_+	glucan 1,6-alpha-glucosidase	NA	NA	NA	NA	NA
VFI38954.1|310052_310226_+	lipoprotein, putative	NA	NA	NA	NA	NA
VFI38962.1|310218_310542_-|transposase	IS630-Spn1, transposase Orf2	transposase	NA	NA	NA	NA
>prophage 4
LR216064	Streptococcus pneumoniae isolate 569492b0-41bd-11e5-998e-3c4a9275d6c6 genome assembly, chromosome: 1	2066251	322293	326901	2066251		Escherichia_phage(33.33%)	6	NA	NA
VFI39040.1|322293_323163_+	glucose-1-phosphate thymidylyltransferase	NA	K7QKA7	Escherichia_phage	63.5	3.2e-101
VFI39047.1|323163_323760_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	H9NC63	Sphingomonas_phage	33.1	3.9e-10
VFI39051.1|323769_324819_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	44.5	8.3e-72
VFI39058.1|324884_325736_+	dTDP-4-keto-L-rhamnose reductase	NA	A0A291LA50	Escherichia_phage	35.8	8.6e-27
VFI39065.1|325798_326425_+	UDP-galactopyranose mutase	NA	E4ZFQ1	Streptococcus_phage	89.4	7.1e-103
VFI39071.1|326397_326901_+	UDP-galactopyranose mutase Glf	NA	E4ZFQ1	Streptococcus_phage	84.3	6.1e-81
>prophage 5
LR216064	Streptococcus pneumoniae isolate 569492b0-41bd-11e5-998e-3c4a9275d6c6 genome assembly, chromosome: 1	2066251	341843	380154	2066251	holin,transposase,tRNA	Ostreococcus_lucimarinus_virus(20.0%)	36	NA	NA
VFI39134.1|341843_343268_+|holin	choline binding protein J	holin	M4QQM4	Ostreococcus_lucimarinus_virus	29.4	7.9e-41
VFI39141.1|343279_343969_+|holin	choline binding protein J	holin	NA	NA	NA	NA
VFI39148.1|344066_345032_+|holin	choline-binding protein F	holin	NA	NA	NA	NA
VFI39155.1|345050_346049_+|holin	choline binding protein J	holin	NA	NA	NA	NA
VFI39161.1|346166_347399_-	major facilitator superfamily permease	NA	NA	NA	NA	NA
VFI39168.1|347557_348028_-	lantibiotic modifying enzyme	NA	NA	NA	NA	NA
VFI39175.1|348928_349207_+|holin	choline binding protein C	holin	NA	NA	NA	NA
VFI39182.1|349381_350260_+	mevalonate kinase	NA	NA	NA	NA	NA
VFI39189.1|350241_351195_+	diphosphomevalonate decarboxylase	NA	NA	NA	NA	NA
VFI39191.1|351181_352189_+	phosphomevalonate kinase	NA	NA	NA	NA	NA
VFI39201.1|352172_353183_+	isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2	NA	NA	NA	NA	NA
VFI39209.1|353260_353959_+	transporter	NA	NA	NA	NA	NA
VFI39216.1|353955_354951_+	histidine kinase	NA	NA	NA	NA	NA
VFI39223.1|354964_355597_+	response regulator	NA	NA	NA	NA	NA
VFI39230.1|356515_356755_+	V8-like Glu-specific endopeptidase	NA	NA	NA	NA	NA
VFI39237.1|356751_357657_+|holin	choline binding protein G	holin	NA	NA	NA	NA
VFI39243.1|357675_358698_+|holin	choline binding protein F	holin	NA	NA	NA	NA
VFI39250.1|358825_359314_-|transposase	IS3-Spn1 transposase, truncation	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	51.6	7.3e-39
VFI39257.1|359555_359657_-|transposase	degenerate transposase (orf2)	transposase	NA	NA	NA	NA
VFI39264.1|359656_359818_-|transposase	transposase	transposase	NA	NA	NA	NA
VFI39271.1|359953_360223_-|transposase	transposase InsK for insertion sequence	transposase	NA	NA	NA	NA
VFI39278.1|360374_362144_+	PTS system mannitol-specific transporter subunit EIIBC	NA	NA	NA	NA	NA
VFI39285.1|362167_364123_+	putative transcriptional regulator MtlR	NA	NA	NA	NA	NA
VFI39292.1|364124_364562_+	mannitol-specific phosphotransferase EIIA	NA	NA	NA	NA	NA
VFI39299.1|364623_365760_+	mannitol-1-phosphate 5-dehydrogenase	NA	NA	NA	NA	NA
VFI39306.1|366565_367849_+	FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor)	NA	NA	NA	NA	NA
VFI39314.1|367896_370263_-	recombinase D	NA	A0A0K2FLP8	Brevibacillus_phage	27.2	1.2e-57
VFI39321.1|370541_371156_-	signal peptidase I	NA	NA	NA	NA	NA
VFI39328.1|371159_372041_-	ribonuclease HIII	NA	NA	NA	NA	NA
VFI39335.1|372127_372430_+|tRNA	seryl-tRNA synthetase	tRNA	NA	NA	NA	NA
VFI39342.1|372426_372975_+	CvpA family protein	NA	NA	NA	NA	NA
VFI39349.1|373078_375415_+	mismatch repair ATPase (MutS family)	NA	Q94M10	Lactobacillus_phage	55.1	1.3e-21
VFI39354.1|375757_377080_+	Na+/alanine symporter	NA	NA	NA	NA	NA
VFI39361.1|377297_377846_+	macrophage infectivity potentiator protein	NA	NA	NA	NA	NA
VFI39368.1|377955_378855_+	exfoliative toxin	NA	NA	NA	NA	NA
VFI39375.1|378879_380154_-|tRNA	seryl-tRNA synthetase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	48.7	1.5e-91
>prophage 6
LR216064	Streptococcus pneumoniae isolate 569492b0-41bd-11e5-998e-3c4a9275d6c6 genome assembly, chromosome: 1	2066251	417097	536705	2066251	transposase,bacteriocin,integrase,tRNA,protease	Bacillus_phage(20.0%)	111	459523:459582	463039:463150
VFI39694.1|417097_417646_-|transposase	degenerate transposase	transposase	A0A1B1P7S0	Bacillus_phage	30.2	4.9e-07
VFI39702.1|417597_418125_-|transposase	degenerate transposase	transposase	NA	NA	NA	NA
VFI39710.1|418379_419225_+	undecaprenol kinase	NA	NA	NA	NA	NA
VFI39718.1|419371_420433_-	DNA polymerase IV	NA	NA	NA	NA	NA
VFI39726.1|420826_423151_+	pyruvate formate-lyase	NA	A0A2P0VNR5	Tetraselmis_virus	32.9	7.9e-115
VFI39734.1|423517_423736_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI39742.1|424062_424347_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI39750.1|424943_425114_-|transposase	ISSpo8 transposase	transposase	NA	NA	NA	NA
VFI39756.1|425930_427154_-	ROK family protein	NA	NA	NA	NA	NA
VFI39761.1|427321_428644_+	PTS system cellobiose-specific IIC component	NA	NA	NA	NA	NA
VFI39770.1|428645_430532_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI39778.1|430699_431044_+	lactose-specific phosphotransferase EIIA	NA	NA	NA	NA	NA
VFI39786.1|431053_432466_+	6-phospho-beta-galactosidase	NA	NA	NA	NA	NA
VFI39794.1|432535_434215_+	pts system lactose-specific transporter subunit EIIBC	NA	NA	NA	NA	NA
VFI39802.1|434340_435780_-	potassium uptake protein	NA	NA	NA	NA	NA
VFI39810.1|435783_437133_-	potassium uptake protein	NA	NA	NA	NA	NA
VFI39818.1|437320_438169_+	Molybdate/tungstate binding protein	NA	NA	NA	NA	NA
VFI39826.1|438183_438732_+	protein YdcD	NA	NA	NA	NA	NA
VFI39834.1|438738_438996_+	N-ethylammeline chlorohydrolase	NA	NA	NA	NA	NA
VFI39842.1|439097_440780_+	cobalt ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.0	5.0e-18
VFI39851.1|440764_441595_+	ABC transporter permease	NA	NA	NA	NA	NA
VFI39859.1|441787_442291_+	RNA methyltransferase	NA	NA	NA	NA	NA
VFI39867.1|442743_443307_+	riboflavin transporter	NA	NA	NA	NA	NA
VFI39875.1|443296_443947_+	phosphatase	NA	NA	NA	NA	NA
VFI39882.1|443974_444364_+	putative histone acetyltransferase	NA	NA	NA	NA	NA
VFI39886.1|444368_444818_+	sortase-like acyltransferase	NA	NA	NA	NA	NA
VFI39894.1|444945_445533_+	DNA-dependent RNA Polymerase, delta subunit (RNAP delta factor)	NA	NA	NA	NA	NA
VFI39902.1|445921_447529_+	CTP synthetase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	47.0	8.9e-142
VFI39907.1|448087_449719_-	sodium-dependent phosphate transporter	NA	NA	NA	NA	NA
VFI39915.1|450011_454952_+	endo-beta-N-acetylglucosaminidase	NA	NA	NA	NA	NA
VFI39922.1|455041_456238_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
VFI39931.1|456373_456901_+	signal peptide	NA	NA	NA	NA	NA
VFI39939.1|456977_457334_+	transcriptional repressor of the glutamine synthetase gene	NA	NA	NA	NA	NA
VFI39948.1|457370_458717_+	glutamate-ammonia ligase	NA	NA	NA	NA	NA
VFI39956.1|458890_459040_+	Uncharacterised protein	NA	NA	NA	NA	NA
459523:459582	attL	GAAACATTATGGGAAGTTTGCTGATGGAAGCACTCAAGAAATTGATGTTCCTTATGATAT	NA	NA	NA	NA
VFI39964.1|459616_460897_+	type I restriction-modification system S protein	NA	NA	NA	NA	NA
VFI39973.1|460844_461453_-	putative type I restriction-modification system S protein	NA	A0A1V0SLK8	Klosneuvirus	30.1	3.9e-13
VFI39982.1|461463_462261_-|integrase	integrase/recombinase, phage integrase family	integrase	A0A0H4TI16	Erysipelothrix_phage	28.7	1.7e-21
VFI39990.1|462317_463289_-	restriction endonuclease S subunit	NA	NA	NA	NA	NA
463039:463150	attR	ATATCATAAGGAACATCAATTTCTTGAGTGCTTCCATCAGCAAACTTCCCATAATGTTTCCCATCATCACCACGAAATATCTCAGTTTCCTTTTTATCTCGTTTGATTTTTC	NA	NA	NA	NA
VFI39998.1|463288_464752_-	type I restriction-modification system M protein	NA	NA	NA	NA	NA
VFI40005.1|464764_467098_-	type I restriction-modification system, R subunit	NA	Q5YA94	Bacillus_phage	27.9	4.5e-25
VFI40013.1|467776_468214_+	Protein of uncharacterised function (DUF2812)	NA	NA	NA	NA	NA
VFI40021.1|468377_469412_+	heat-inducible transcription repressor	NA	NA	NA	NA	NA
VFI40029.1|469438_469963_+	heat shock protein GrpE	NA	NA	NA	NA	NA
VFI40037.1|470442_472266_+	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	47.2	1.3e-133
VFI40045.1|473024_474161_+	dnaJ protein, Heat-shock protein (activation of DnaK)	NA	E3T4P7	Cafeteria_roenbergensis_virus	31.3	2.4e-24
VFI40051.1|474482_474722_-	chlorohydrolase	NA	NA	NA	NA	NA
VFI40059.1|474883_475171_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI40067.1|475180_475591_-	protein hit	NA	B5LJ12	Mycobacterium_phage	31.6	3.4e-05
VFI40076.1|475658_476390_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.6	4.1e-25
VFI40080.1|476386_477436_+	ABC transporter permease	NA	NA	NA	NA	NA
VFI40088.1|477603_477933_-	BlpT protein, fusion	NA	NA	NA	NA	NA
VFI40096.1|478209_478548_+	regulatory protein, single domain response regulator	NA	NA	NA	NA	NA
VFI40104.1|478552_479290_+	response regulator	NA	NA	NA	NA	NA
VFI40109.1|479303_480644_+	sensor histidine kinase BlpH	NA	NA	NA	NA	NA
VFI40119.1|480688_480844_-|bacteriocin	peptide pheromone BlpC (bacteriocin-like peptide)	bacteriocin	NA	NA	NA	NA
VFI40127.1|480900_482262_-	BlpC ABC transporter	NA	NA	NA	NA	NA
VFI40135.1|482272_484426_-	competence factor transporting ATP-binding protein/permease ComA	NA	W8CYL7	Bacillus_phage	27.9	2.2e-42
VFI40143.1|484705_484909_+|bacteriocin	bacteriocin BlpPQ	bacteriocin	NA	NA	NA	NA
VFI40152.1|485226_485430_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI40160.1|486003_486168_+	putative immunity protein	NA	NA	NA	NA	NA
VFI40168.1|486513_486693_+|transposase	degenerate transposase	transposase	NA	NA	NA	NA
VFI40174.1|486804_487194_+|transposase	transposase	transposase	NA	NA	NA	NA
VFI40182.1|487343_487598_+	BlpM	NA	NA	NA	NA	NA
VFI40186.1|487613_487817_+	blpN protein	NA	NA	NA	NA	NA
VFI40191.1|489216_489600_+	putative immunity protein BlpX	NA	NA	NA	NA	NA
VFI40199.1|489651_490341_+|protease	metal-dependent CAAX amino terminal membrane protease	protease	NA	NA	NA	NA
VFI40209.1|490382_490616_+	immunity protein BlpZ	NA	NA	NA	NA	NA
VFI40217.1|490766_491378_+|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
VFI40225.1|491538_492333_+	aminoglycoside phosphotransferase	NA	NA	NA	NA	NA
VFI40233.1|492329_492965_+|tRNA	tRNA (guanine-N(7)-)-methyltransferase	tRNA	NA	NA	NA	NA
VFI40241.1|493090_493570_+	SP14.3 protein	NA	NA	NA	NA	NA
VFI40250.1|493625_494750_+	transcription elongation factor NusA	NA	NA	NA	NA	NA
VFI40259.1|494771_495065_+	cytosolic protein YlxR	NA	NA	NA	NA	NA
VFI40267.1|495072_495357_+	L7A family ribosomal protein	NA	NA	NA	NA	NA
VFI40275.1|495373_498166_+	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	22.9	3.3e-19
VFI40283.1|498416_498767_+	ribosome-binding factor A	NA	NA	NA	NA	NA
VFI40291.1|499045_499825_+	ABC transporter ATPase	NA	NA	NA	NA	NA
VFI40299.1|499826_500009_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI40307.1|500005_500146_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI40315.1|500458_500692_+	Domain of uncharacterised function (DUF1858)	NA	NA	NA	NA	NA
VFI40323.1|500691_502026_+	hemerythrin HHE cation binding domain subfamily	NA	NA	NA	NA	NA
VFI40332.1|502035_502290_+	aldose 1-epimerase	NA	NA	NA	NA	NA
VFI40342.1|502385_502781_+	Helicase	NA	NA	NA	NA	NA
VFI40350.1|503193_503370_+	conserved protein/domain typically associated with flavoprotein oxygenase, Dim6/ntab family	NA	NA	NA	NA	NA
VFI40358.1|503629_504187_+	GNAT family acetyltransferase	NA	NA	NA	NA	NA
VFI40366.1|504188_505151_+	putative uncharacterized protein (hydrophilic)	NA	NA	NA	NA	NA
VFI40374.1|505162_507814_+|tRNA	valyl-tRNA synthetase	tRNA	A0A1V0S951	Catovirus	41.3	9.8e-154
VFI40380.1|507894_508986_+	cytosine methyl transferase	NA	M1PSQ0	Streptococcus_phage	33.0	8.1e-38
VFI40388.1|508966_510574_+	Predicted ATP-binding protein involved in virulence	NA	NA	NA	NA	NA
VFI40392.1|511176_511980_+	Fic protein family	NA	NA	NA	NA	NA
VFI40402.1|512095_512584_-|transposase	IS3-Spn1 transposase, truncation	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	50.9	8.1e-38
VFI40410.1|512559_512928_-|transposase	degenerate transposase (Orf2)	transposase	A0A1B1P773	Bacillus_phage	55.1	1.8e-13
VFI40416.1|513153_513366_-|transposase	degenerate transposase (Orf1)	transposase	NA	NA	NA	NA
VFI40419.1|513614_514880_+	DNA or RNA helicases of superfamily II	NA	NA	NA	NA	NA
VFI40427.1|515095_516292_+	helicase	NA	I3UKD0	Ostreococcus_lucimarinus_virus	28.4	1.8e-17
VFI40430.1|516591_517431_+	transcription antiterminator LicT	NA	NA	NA	NA	NA
VFI40440.1|517448_519287_+	PTS system beta-glucoside-specific transporter subunit EIIABC	NA	NA	NA	NA	NA
VFI40449.1|519299_520715_+	beta-glucosidase	NA	NA	NA	NA	NA
VFI40456.1|521306_522353_+|tRNA	phenylalanyl-tRNA synthetase, alpha chain	tRNA	A0A2I2L4E3	Orpheovirus	32.8	1.6e-27
VFI40463.1|522352_522862_+	acetyltransferase, GNAT family	NA	NA	NA	NA	NA
VFI40470.1|522938_525344_+|tRNA	phenylalanyl-tRNA synthetase, beta chain	tRNA	NA	NA	NA	NA
VFI40477.1|525411_526413_-	endonuclease/exonuclease/phosphatase family	NA	NA	NA	NA	NA
VFI40484.1|526568_527063_+|transposase	transposase	transposase	NA	NA	NA	NA
VFI40491.1|527210_527408_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
VFI40499.1|527668_529918_+	5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase	NA	NA	NA	NA	NA
VFI40509.1|529981_530848_+	5,10-methylenetetrahydrofolate reductase	NA	NA	NA	NA	NA
VFI40517.1|531532_533746_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
VFI40525.1|533761_534379_+	serine O-acetyltransferase	NA	NA	NA	NA	NA
VFI40533.1|534390_535275_+	GNAT family acetyltransferase	NA	NA	NA	NA	NA
VFI40541.1|535361_536705_+|tRNA	cysteinyl-tRNA synthetase	tRNA	M1PG92	Moumouvirus	35.8	1.2e-46
>prophage 7
LR216064	Streptococcus pneumoniae isolate 569492b0-41bd-11e5-998e-3c4a9275d6c6 genome assembly, chromosome: 1	2066251	578102	615785	2066251	transposase,protease	Staphylococcus_prophage(33.33%)	27	NA	NA
VFI40875.1|578102_584534_+|protease	serine protease	protease	NA	NA	NA	NA
VFI40883.1|584732_585050_-|transposase	transposase, IS1167, truncation	transposase	A0A1S5SBP9	Streptococcus_phage	87.1	5.1e-33
VFI40891.1|585264_585450_+	IS66 family element	NA	NA	NA	NA	NA
VFI40901.1|585430_585781_+|transposase	transposase, ISSmi4	transposase	NA	NA	NA	NA
VFI40909.1|585803_586070_-|transposase	transposase family protein	transposase	NA	NA	NA	NA
VFI40917.1|586959_587118_+|transposase	transposase	transposase	NA	NA	NA	NA
VFI40925.1|587472_587949_+	PTS system transporter subunit IIA	NA	NA	NA	NA	NA
VFI40933.1|587986_588292_+	PTS system IIB component (galactitol/fructose specific)	NA	NA	NA	NA	NA
VFI40941.1|588339_589815_+	PTS system galactitol-specific family transporter subunit IIC	NA	NA	NA	NA	NA
VFI40949.1|589840_590032_+	chlorohydrolase	NA	NA	NA	NA	NA
VFI40957.1|590119_596821_+	beta-galactosidase	NA	NA	NA	NA	NA
VFI40965.1|597068_597692_-|transposase	transposase	transposase	Q9MBP7	Staphylococcus_prophage	40.0	1.8e-05
VFI40973.1|597679_597925_-|transposase	transposase	transposase	Q9MBP7	Staphylococcus_prophage	43.6	1.5e-11
VFI40980.1|598135_598495_-	integral membrane protein	NA	NA	NA	NA	NA
VFI40988.1|598586_599096_+	radical SAM superfamily protein (pseudogene)	NA	NA	NA	NA	NA
VFI40996.1|599096_599543_+	putative Fe-S oxidoreductase	NA	A0A2H4PQV5	Staphylococcus_phage	50.4	2.9e-34
VFI41003.1|599526_600084_+	SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	40.3	9.0e-33
VFI41011.1|600076_600331_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI41019.1|600342_602397_+	Na+/H+ antiporter	NA	NA	NA	NA	NA
VFI41027.1|602575_603436_+	ribonuclease BN	NA	NA	NA	NA	NA
VFI41035.1|603654_604365_+	cytochrome c-type biogenesis protein	NA	NA	NA	NA	NA
VFI41047.1|604384_604951_+	thioredoxin	NA	NA	NA	NA	NA
VFI41056.1|604961_606074_+	peptide methionine sulfoxide reductase	NA	NA	NA	NA	NA
VFI41064.1|606431_607169_+	DNA-binding response regulator	NA	NA	NA	NA	NA
VFI41072.1|607165_608857_+	histidine kinase	NA	Q9EYF3	Enterobacteria_phage	32.7	9.4e-25
VFI41082.1|608972_609536_+	UPF0340 protein SSU05	NA	NA	NA	NA	NA
VFI41090.1|609557_615785_+|protease	zinc metalloprotease ZmpB	protease	NA	NA	NA	NA
>prophage 8
LR216064	Streptococcus pneumoniae isolate 569492b0-41bd-11e5-998e-3c4a9275d6c6 genome assembly, chromosome: 1	2066251	704662	822156	2066251	protease,transposase,integrase,tRNA	Streptococcus_phage(15.15%)	111	803104:803163	806033:806144
VFI41895.1|704662_704878_+|tRNA	seryl-tRNA synthetase family protein	tRNA	NA	NA	NA	NA
VFI41903.1|705083_705620_-	biotin synthase	NA	NA	NA	NA	NA
VFI41911.1|705816_707163_-	glutathione reductase	NA	NA	NA	NA	NA
VFI41916.1|707448_708648_+	membrane-fusion protein	NA	NA	NA	NA	NA
VFI41922.1|708631_709333_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	43.9	4.0e-38
VFI41931.1|709334_710594_+	ABC transporter permeae	NA	NA	NA	NA	NA
VFI41940.1|710717_712715_+|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SEZ7	Hokovirus	31.4	2.3e-83
VFI41948.1|712764_713046_+	chlorohydrolase	NA	NA	NA	NA	NA
VFI41956.1|713135_713456_+	PadR family transcriptional regulator	NA	NA	NA	NA	NA
VFI41964.1|713459_714275_+	membrane protein	NA	NA	NA	NA	NA
VFI41970.1|714349_715276_+	aldo/keto reductase family oxidoreductase	NA	NA	NA	NA	NA
VFI41978.1|715371_715608_+|tRNA	methionine--tRNA ligase	tRNA	NA	NA	NA	NA
VFI41986.1|715600_716299_+	short chain dehydrogenase	NA	A0A0K0KVL6	Prochlorococcus_phage	30.9	2.8e-07
VFI41994.1|716309_716810_+	NTP pyrophosphohydrolase including oxidative damage repair enzymes	NA	NA	NA	NA	NA
VFI42002.1|716784_717657_+	PEP-utilizing enzyme family protein	NA	NA	NA	NA	NA
VFI42010.1|717631_718072_+	acetyltransferase	NA	NA	NA	NA	NA
VFI42018.1|718194_720741_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	27.2	1.3e-73
VFI42028.1|720849_721524_+	DNA-binding response regulator CiaR	NA	W8CYM9	Bacillus_phage	33.6	3.1e-27
VFI42036.1|721513_722848_+	histidine kinase	NA	Q8QNA2	Ectocarpus_siliculosus_virus	34.0	1.2e-06
VFI42044.1|722881_723169_-	membrane protein	NA	NA	NA	NA	NA
VFI42052.1|723308_724238_+	U32 family peptidase	NA	NA	NA	NA	NA
VFI42060.1|724437_726888_+	ATP-dependent helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	46.9	9.6e-196
VFI42069.1|726924_728148_+	RodA	NA	NA	NA	NA	NA
VFI42077.1|728158_728713_+	4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein	NA	A0A0N7KVR4	Yellowstone_lake_phycodnavirus	27.2	6.4e-07
VFI42085.1|728788_729361_+	phosphatase	NA	NA	NA	NA	NA
VFI42093.1|729375_731322_+	DNA gyrase subunit B	NA	G3M9Z3	Bacillus_virus	45.5	2.1e-145
VFI42101.1|731403_733131_+	septation ring formation regulator EzrA	NA	NA	NA	NA	NA
VFI42110.1|733946_734183_-|transposase	transposase, ISSmi4	transposase	NA	NA	NA	NA
VFI42118.1|734443_734743_-	Domain of uncharacterised function (DUF1827)	NA	NA	NA	NA	NA
VFI42130.1|734907_735330_-	mutT/nudix family protein	NA	NA	NA	NA	NA
VFI42139.1|735440_735770_+|transposase	IS630-Spn1, transposase Orf1	transposase	NA	NA	NA	NA
VFI42147.1|735948_736287_+|transposase	IS630-Spn1, transposase Orf2	transposase	NA	NA	NA	NA
VFI42155.1|736493_738752_-|protease	ATP-dependent Clp protease, ATP-binding subunit	protease	K4FB40	Cronobacter_phage	40.4	4.6e-128
VFI42164.1|738980_739211_-	Protein of uncharacterised function (DUF1797)	NA	NA	NA	NA	NA
VFI42172.1|739400_740084_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
VFI42181.1|740083_740818_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	43.1	1.3e-36
VFI42185.1|740971_741829_+	FolD bifunctional protein; includes: methylenetetrahydrofolate dehydrogenase, methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	41.5	6.8e-40
VFI42192.1|741970_742843_+	carbohydrate kinase	NA	NA	NA	NA	NA
VFI42200.1|743124_743808_+	ribose-5-phosphate isomerase A	NA	NA	NA	NA	NA
VFI42208.1|743821_745033_+	phosphopentomutase	NA	NA	NA	NA	NA
VFI42216.1|745034_745577_+	phosphopentomutase	NA	NA	NA	NA	NA
VFI42224.1|745592_746402_+	purine nucleoside phosphorylase	NA	NA	NA	NA	NA
VFI42232.1|746865_747273_+	topology modulation protein	NA	NA	NA	NA	NA
VFI42241.1|747282_747858_+	thiol-activated cytolysin	NA	NA	NA	NA	NA
VFI42249.1|747882_748305_+	pneumolysin	NA	NA	NA	NA	NA
VFI42258.1|749048_749759_+	purine nucleoside phosphorylase	NA	NA	NA	NA	NA
VFI42268.1|749781_750306_-	topology modulation protein	NA	A0A097BYE2	Leuconostoc_phage	41.2	5.3e-27
VFI42276.1|750358_750595_-	putative 30S ribosomal protein S20	NA	NA	NA	NA	NA
VFI42282.1|750662_751583_-	pantothenate kinase	NA	NA	NA	NA	NA
VFI42290.1|751772_752018_+	membrane protein (pseudogene)	NA	NA	NA	NA	NA
VFI42298.1|752346_752937_+	16S RNA G1207 methylase RsmC	NA	NA	NA	NA	NA
VFI42306.1|752933_754211_+	thymidine phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	51.7	4.8e-114
VFI42314.1|754228_754891_+	deoxyribose-phosphate aldolase	NA	NA	NA	NA	NA
VFI42320.1|754877_755267_+	cytidine deaminase	NA	NA	NA	NA	NA
VFI42328.1|755356_756409_+	lipoprotein	NA	NA	NA	NA	NA
VFI42336.1|756552_758088_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	32.5	1.4e-19
VFI42344.1|758080_759139_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
VFI42352.1|759141_760098_+	ABC transporter, membrane-spanning permease	NA	NA	NA	NA	NA
VFI42356.1|760182_760581_+|transposase	IS3-Spn1 transposase	transposase	NA	NA	NA	NA
VFI42365.1|760640_760808_+|transposase	transposase	transposase	NA	NA	NA	NA
VFI42374.1|760807_761053_+|transposase	degenerate transposase (Orf2)	transposase	A0A1B1P773	Bacillus_phage	49.3	1.1e-11
VFI42382.1|761067_761325_+|integrase	integrase core domain-containing protein	integrase	A0A0C5AEA5	Paenibacillus_phage	40.8	3.0e-07
VFI42391.1|761562_762204_-	putative glycerol-3-phosphate acyltransferase PlsY	NA	NA	NA	NA	NA
VFI42399.1|762339_764283_+	topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	43.0	9.2e-125
VFI42407.1|764282_764390_+	N-6 DNA methylase	NA	NA	NA	NA	NA
VFI42415.1|764738_767174_+	topoisomerase IV subunit A, ParC	NA	G3M9Z5	Bacillus_virus	31.3	1.9e-95
VFI42424.1|767305_768328_+	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
VFI42432.1|768383_769088_+	extracellular oligopeptide-binding protein	NA	NA	NA	NA	NA
VFI42440.1|769152_769842_+	permease	NA	NA	NA	NA	NA
VFI42448.1|769838_770762_+	permease	NA	NA	NA	NA	NA
VFI42455.1|770776_771421_+	pyroglutamyl-peptidase I	NA	NA	NA	NA	NA
VFI42463.1|771588_771819_+	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
VFI42471.1|772191_773394_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
VFI42479.1|773478_774006_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	96.0	1.3e-89
VFI42483.1|774002_774581_-|transposase	degenerate transposase	transposase	A0A1S5SBP9	Streptococcus_phage	80.8	7.5e-75
VFI42491.1|774850_775348_+	GAF domain-containing protein	NA	NA	NA	NA	NA
VFI42499.1|775347_777003_+	DNA polymerase III subunits gamma and tau	NA	A0A1U9WR94	Streptococcus_virus	41.9	1.1e-46
VFI42508.1|777030_777225_+	membrane protein	NA	NA	NA	NA	NA
VFI42516.1|777374_778145_+	FeS assembly ATPase SufC	NA	A0A2R8FG22	Brazilian_cedratvirus	28.5	2.5e-09
VFI42524.1|778172_779435_+	FeS assembly protein SufD	NA	NA	NA	NA	NA
VFI42532.1|779445_780672_+	class-V aminotransferase	NA	Q2XUY6	environmental_halophage	44.8	1.9e-104
VFI42541.1|780658_781099_+	nifU family protein	NA	A0A2P1CJL8	Mycobacterium_phage	39.0	2.1e-13
VFI42549.1|781152_782565_+	Iron-sulfur cluster assembly protein SufB	NA	NA	NA	NA	NA
VFI42557.1|782795_784037_-	D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 3	NA	B6DZZ7	Stx2-converting_phage	25.2	1.1e-17
VFI42560.1|784139_785249_+	putative permease	NA	NA	NA	NA	NA
VFI42567.1|785559_786750_+|transposase	IS1167, transposase	transposase	A0A1S5SBP9	Streptococcus_phage	98.4	1.4e-216
VFI42574.1|788061_788802_+	transcriptional repressor of fructose operon	NA	NA	NA	NA	NA
VFI42581.1|788798_789710_+	fructose-1-phosphate kinase	NA	NA	NA	NA	NA
VFI42590.1|789706_791659_+	PTS system, fructose specific IIBC component	NA	NA	NA	NA	NA
VFI42598.1|791744_794048_+	DNA translocase, cell division protein	NA	S5VNE3	Mycobacterium_phage	49.9	1.0e-85
VFI42604.1|794092_794527_-	TBC1 domain family member 8B	NA	NA	NA	NA	NA
VFI42614.1|794604_795807_+	class-V aminotransferase	NA	NA	NA	NA	NA
VFI42620.1|795815_797030_+	thiamine biosynthesis ATP pyrophosphatase	NA	NA	NA	NA	NA
VFI42625.1|797164_797989_+	Esterase	NA	NA	NA	NA	NA
VFI42634.1|798010_798346_+	esterase superfamily protein	NA	NA	NA	NA	NA
VFI42642.1|798342_798750_+	esterase	NA	NA	NA	NA	NA
VFI42650.1|798762_799929_+	carbamoylphosphate synthase large subunit	NA	NA	NA	NA	NA
VFI42658.1|800436_801930_+	type I restriction modification enzyme methylase subunit	NA	A0A2H4UVB0	Bodo_saltans_virus	31.8	3.0e-27
VFI42666.1|801942_803133_+	type I restriction-modification system, S subunit, putative	NA	NA	NA	NA	NA
803104:803163	attL	TTCAGCCTCAGTTACCAATTACAAAATTAAAAAAAATACTTCTCCCCCTCCCCCCACTAG	NA	NA	NA	NA
VFI42675.1|803344_803581_+	toxin-antitoxin system, antitoxin component,AbrB family	NA	NA	NA	NA	NA
VFI42684.1|803577_803991_+	prophage maintenance system killer protein	NA	NA	NA	NA	NA
VFI42692.1|804108_805074_+|integrase	integrase/recombinase, phage integrase family protein	integrase	A0A2H4JAA2	uncultured_Caudovirales_phage	29.6	1.8e-33
VFI42700.1|805419_806202_+|transposase	IS1167, transposase	transposase	A0A1S5SBP9	Streptococcus_phage	77.0	1.8e-108
806033:806144	attR	TTCAGCCTCAGTTACCAATTACAAAATTAAAAAAAATACTTCTCCCCCTCCCCCCACTAGCCCTCCAAAATGAGTTCGCAGACTTTGTAGTCCAGGCCGACAAATCACAATT	NA	NA	NA	NA
VFI42708.1|806231_809582_+	type I restriction-modification system R subunit	NA	A0A2H4P9W3	Gordonia_phage	24.8	2.4e-11
VFI42716.1|810124_810595_-	arginine repressor	NA	NA	NA	NA	NA
VFI42724.1|810611_812885_-	x-prolyl-dipeptidyl aminopeptidase	NA	NA	NA	NA	NA
VFI42732.1|813231_816333_+	DNA-polymerase III alpha-chain	NA	A0A291AWR1	Streptomyces_phage	32.5	1.7e-112
VFI42740.1|816414_817422_+	6-phosphofructokinase	NA	NA	NA	NA	NA
VFI42745.1|817480_818986_+	pyruvate kinase	NA	NA	NA	NA	NA
VFI42756.1|820793_821666_+	lipoprotein, putative	NA	NA	NA	NA	NA
VFI42764.1|821967_822156_-|transposase	transposase-like protein, IS1381 ISSpn7	transposase	NA	NA	NA	NA
>prophage 9
LR216064	Streptococcus pneumoniae isolate 569492b0-41bd-11e5-998e-3c4a9275d6c6 genome assembly, chromosome: 1	2066251	834315	878159	2066251	protease,holin,transposase,tRNA	Streptococcus_phage(47.37%)	46	NA	NA
VFI42889.1|834315_835191_-|transposase	IS1239 transposase	transposase	H7BWC8	unidentified_phage	31.6	6.8e-27
VFI42898.1|835897_837373_+	ornithine decarboxylase family protein	NA	NA	NA	NA	NA
VFI42907.1|837526_838054_-|transposase	degenerate transposase	transposase	NA	NA	NA	NA
VFI42915.1|838309_839170_+	spermidine synthase	NA	NA	NA	NA	NA
VFI42923.1|839166_840426_+	dehydrogenase family protein, saccharopine dehydrogenase	NA	NA	NA	NA	NA
VFI42928.1|840425_841553_+	LysA-like decarboxylase, diaminopimelate decarboxylase putative	NA	NA	NA	NA	NA
VFI42931.1|841549_842635_+	agmatine deiminase	NA	M1HES8	Acanthocystis_turfacea_Chlorella_virus	47.5	2.0e-89
VFI42939.1|842644_843520_+	carbon-nitrogen hydrolase family protein	NA	M1H5W0	Paramecium_bursaria_Chlorella_virus	50.0	1.1e-77
VFI42947.1|843700_844510_-	Cof family protein	NA	NA	NA	NA	NA
VFI42956.1|844781_845003_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI42968.1|845056_845728_+|protease	caax amino protease family protein	protease	NA	NA	NA	NA
VFI42976.1|845969_846878_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	27.7	3.1e-06
VFI42985.1|846874_847336_+	lipoprotein signal peptidase, signal peptidase type II	NA	NA	NA	NA	NA
VFI42993.1|847325_848213_+	23S rluA family pseudouridine synthase	NA	NA	NA	NA	NA
VFI43002.1|848215_850099_+|holin	choline binding protein E CbpE	holin	Q332B9	Clostridium_botulinum_C_phage	22.9	2.8e-09
VFI43010.1|850199_851309_+	gamma-glutamyl kinase	NA	A0A1X9I5D0	Streptococcus_phage	58.4	8.4e-115
VFI43018.1|851318_852581_+	gamma-glutamyl phosphate reductase	NA	A0A1X9I5D4	Streptococcus_phage	64.5	2.5e-139
VFI43025.1|852584_853382_+	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	50.6	2.7e-59
VFI43034.1|853601_854240_+	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	68.1	1.3e-75
VFI43043.1|854236_855127_+	DNA polymerase III, delta' subunit	NA	M1NSC1	Streptococcus_phage	51.7	4.9e-73
VFI43052.1|855166_855484_+	DNA replication intiation control protein YabA	NA	M1PFV3	Streptococcus_phage	60.0	2.9e-28
VFI43060.1|855486_856356_+	tetrapyrrole methylase	NA	M1PLC5	Streptococcus_phage	76.1	2.7e-116
VFI43068.1|856582_857101_+	DUF1706 domain-containing protein	NA	NA	NA	NA	NA
VFI43074.1|857209_857857_+	phage protein	NA	A0A2P0VK56	Streptococcus_phage	33.7	7.0e-13
VFI43082.1|857845_858235_-|transposase	transposase	transposase	NA	NA	NA	NA
VFI43090.1|858231_858606_-|transposase	transposase-like protein, IS1381 ISSpn7	transposase	NA	NA	NA	NA
VFI43098.1|859099_860434_+|tRNA	tRNA (uracil-5-)-methyltransferase Gid	tRNA	NA	NA	NA	NA
VFI43106.1|860517_861255_+	uridylate kinase	NA	NA	NA	NA	NA
VFI43114.1|861263_861821_+	ribosome-recycling factor	NA	NA	NA	NA	NA
VFI43122.1|861880_862735_+	s1 RNA binding domain protein	NA	NA	NA	NA	NA
VFI43130.1|862743_862959_+	serine-type D-Ala-D-Ala carboxypeptidase	NA	NA	NA	NA	NA
VFI43138.1|863044_864049_+	PhoH family protein	NA	W8D063	Erwinia_phage	48.1	1.0e-47
VFI43144.1|864156_864726_+	acetyltransferase	NA	NA	NA	NA	NA
VFI43152.1|864793_865444_+	competence protein	NA	NA	NA	NA	NA
VFI43160.1|865427_867668_+	competence protein CelB	NA	M1PSD2	Streptococcus_phage	52.2	5.7e-46
VFI43168.1|868067_868655_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.1	6.8e-15
VFI43176.1|868658_869843_+	ABC-type transport system involved in multi-copper enzyme maturation, permease component	NA	NA	NA	NA	NA
VFI43184.1|870126_870684_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	32.1	2.5e-11
VFI43192.1|870716_870917_+	LSU ribosomal protein L35p	NA	NA	NA	NA	NA
VFI43200.1|870968_871328_+	LSU ribosomal protein L20p	NA	NA	NA	NA	NA
VFI43209.1|871385_871766_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
VFI43217.1|872015_872816_+	dihydroorotate dehydrogenase electron transfer subunit	NA	NA	NA	NA	NA
VFI43226.1|872826_873765_+	dihydroorotate dehydrogenase 1B	NA	NA	NA	NA	NA
VFI43235.1|873864_875841_+	endo-beta-N-acetylglucosaminidase	NA	A0A143FPM9	Bacillus_phage	42.0	2.4e-24
VFI43239.1|875901_877557_-	fibronectin/fibrinogen binding protein	NA	A0A1J0F9J4	Only_Syngen_Nebraska_virus	36.5	4.7e-05
VFI43247.1|877661_878159_+|protease	putative metalloprotease	protease	NA	NA	NA	NA
>prophage 10
LR216064	Streptococcus pneumoniae isolate 569492b0-41bd-11e5-998e-3c4a9275d6c6 genome assembly, chromosome: 1	2066251	890985	943785	2066251	transposase,protease,integrase	Macacine_betaherpesvirus(14.29%)	44	890964:890979	891493:891508
890964:890979	attL	CCCCAAAAGTTAGACA	NA	NA	NA	NA
VFI43362.1|890985_891327_-|integrase	integrase core subunit	integrase	A0A2I6AZV9	Macacine_betaherpesvirus	51.3	7.2e-25
VFI43370.1|891326_891518_-|transposase	degenerate transposase (orf1)	transposase	NA	NA	NA	NA
891493:891508	attR	TGTCTAACTTTTGGGG	NA	NA	NA	NA
VFI43377.1|892087_892708_-	phosphoglycerate mutase	NA	NA	NA	NA	NA
VFI43385.1|892707_893190_-	regulatory protein	NA	NA	NA	NA	NA
VFI43394.1|893189_894032_-	integral membrane protein	NA	NA	NA	NA	NA
VFI43403.1|894126_894927_-	lysozyme	NA	NA	NA	NA	NA
VFI43411.1|895070_896450_+	bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase	NA	A0A2K9L277	Tupanvirus	35.0	1.4e-31
VFI43419.1|896459_897005_+	MutT/NUDIX hydrolase family protein	NA	NA	NA	NA	NA
VFI43427.1|897016_897331_+	membrane protein	NA	NA	NA	NA	NA
VFI43435.1|897347_898040_+	5'-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosidase	NA	NA	NA	NA	NA
VFI43444.1|898116_898608_+	DNA-binding protein	NA	NA	NA	NA	NA
VFI43452.1|898705_899296_+	DNA polymerase III subunit epsilon	NA	NA	NA	NA	NA
VFI43460.1|899304_901068_+	glycerophosphoryl diester phosphodiesterase family protein	NA	A0A0S2MYI4	Enterococcus_phage	22.2	3.0e-05
VFI43468.1|901281_901611_+|transposase	IS630-Spn1, transposase Orf1	transposase	NA	NA	NA	NA
VFI43477.1|902315_902732_+	surface anchored protein	NA	NA	NA	NA	NA
VFI43485.1|902962_903670_+	cytochrome c-type biogenesis protein CcdA	NA	NA	NA	NA	NA
VFI43493.1|903680_904238_+	thioredoxin	NA	NA	NA	NA	NA
VFI43501.1|904611_906003_+	amino acid permease family protein	NA	NA	NA	NA	NA
VFI43509.1|906145_907063_+	adhesion lipoprotein	NA	NA	NA	NA	NA
VFI43518.1|907070_909551_+	pneumococcal histidine triad protein D	NA	NA	NA	NA	NA
VFI43526.1|909972_910125_+	sugar phosphotransferase system (PTS), fructose family, IIA component	NA	NA	NA	NA	NA
VFI43535.1|910194_910353_+	sugar phosphotransferase system (PTS), fructose family, IIA component	NA	NA	NA	NA	NA
VFI43544.1|910811_911525_+	HAD superfamily hydrolase	NA	NA	NA	NA	NA
VFI43552.1|911538_912186_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI43560.1|912321_912975_+	uracil-DNA glycosylase	NA	A0A286RUF9	Beluga_whale_alphaherpesvirus	38.3	2.8e-33
VFI43568.1|912984_913449_+	Mutator mutT protein	NA	NA	NA	NA	NA
VFI43577.1|913461_914730_+	dihydroorotase	NA	NA	NA	NA	NA
VFI43586.1|914743_915004_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI43594.1|915014_916376_+	mate efflux family protein	NA	NA	NA	NA	NA
VFI43602.1|916529_917498_+	acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha	NA	NA	NA	NA	NA
VFI43610.1|917513_918506_+	putative acetoin dehydrogenase	NA	NA	NA	NA	NA
VFI43618.1|918723_919767_+	dihydrolipoamide acetyltransferase	NA	NA	NA	NA	NA
VFI43626.1|919812_921516_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
VFI43630.1|921579_922569_+	lipoate protein ligase A	NA	NA	NA	NA	NA
VFI43638.1|922633_923704_-	tyrosine recombinase	NA	A0A1B1IQT7	uncultured_Mediterranean_phage	29.3	5.2e-05
VFI43646.1|924289_925840_-	voltage-gated chloride channel family protein	NA	NA	NA	NA	NA
VFI43654.1|925855_926635_-	ribonuclease HII	NA	G4YAY0	Emiliania_huxleyi_virus	37.1	2.1e-24
VFI43662.1|926621_927473_-	GTP-binding protein	NA	NA	NA	NA	NA
VFI43670.1|927920_933935_-|protease	immunoglobulin A1 protease	protease	NA	NA	NA	NA
VFI43680.1|934143_935322_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI43688.1|935491_939142_-	ATP-dependent exoDNAse subunit beta	NA	G3MA40	Bacillus_virus	24.8	5.7e-19
VFI43696.1|939138_942414_-	exonuclease RexB	NA	NA	NA	NA	NA
VFI43705.1|942939_943269_+|transposase	IS630-Spn1, transposase Orf1	transposase	NA	NA	NA	NA
VFI43713.1|943446_943785_+|transposase	IS630-Spn1, transposase Orf2	transposase	NA	NA	NA	NA
>prophage 11
LR216064	Streptococcus pneumoniae isolate 569492b0-41bd-11e5-998e-3c4a9275d6c6 genome assembly, chromosome: 1	2066251	983550	991209	2066251	transposase	Streptococcus_phage(100.0%)	10	NA	NA
VFI44020.1|983550_984015_-|transposase	transposase	transposase	NA	NA	NA	NA
VFI44028.1|983965_984355_-|transposase	transposase-like protein, IS1381 ISSpn7	transposase	NA	NA	NA	NA
VFI44036.1|984351_984636_-|transposase	degenerate transposase (Orf1)	transposase	NA	NA	NA	NA
VFI44044.1|984734_985595_-	methionyl aminopeptidase	NA	NA	NA	NA	NA
VFI44052.1|985610_986888_-	DRTGG domain/CBS domain-containing protein	NA	NA	NA	NA	NA
VFI44061.1|986880_987432_-	acetyltransferase	NA	NA	NA	NA	NA
VFI44069.1|987447_988707_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2	NA	NA	NA	NA	NA
VFI44077.1|989846_990401_+|transposase	IS1167 transposase	transposase	A0A1S5SBP9	Streptococcus_phage	96.4	6.7e-89
VFI44085.1|990397_990685_+|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	75.3	4.6e-25
VFI44087.1|990681_991209_+|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	94.3	1.4e-88
>prophage 12
LR216064	Streptococcus pneumoniae isolate 569492b0-41bd-11e5-998e-3c4a9275d6c6 genome assembly, chromosome: 1	2066251	1087567	1150511	2066251	protease,holin,tRNA,bacteriocin	Bacillus_phage(18.75%)	58	NA	NA
VFI44816.1|1087567_1087870_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
VFI44823.1|1087866_1087962_-|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
VFI44830.1|1088110_1088989_-|tRNA	tRNA pseudouridine synthase B	tRNA	NA	NA	NA	NA
VFI44837.1|1089089_1092275_-	membrane protein	NA	NA	NA	NA	NA
VFI44845.1|1092286_1093561_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VFI44852.1|1093656_1094772_-	O-acetylhomoserine sulfhydrylase	NA	NA	NA	NA	NA
VFI44859.1|1094793_1094916_-	O-acetylhomoserine sulfhydrylase	NA	NA	NA	NA	NA
VFI44866.1|1095063_1095861_-	formate/nitrate transporter	NA	NA	NA	NA	NA
VFI44873.1|1096104_1096848_-	sortase SrtA	NA	NA	NA	NA	NA
VFI44880.1|1096847_1099316_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	35.5	2.7e-105
VFI44886.1|1099509_1100496_+	L-lactate dehydrogenase 1	NA	NA	NA	NA	NA
VFI44892.1|1100758_1101532_-	ion transporter	NA	A0A1B0Y2S3	Lactobacillus_phage	47.1	4.0e-23
VFI44904.1|1101578_1101842_-	cytotoxic translational repressor of toxin-antitoxin stability system	NA	NA	NA	NA	NA
VFI44911.1|1101834_1102077_-	toxin-antitoxin system, antitoxin component, ribbon-helix-helix fold protein	NA	NA	NA	NA	NA
VFI44918.1|1102167_1102977_-	metallo-beta-lactamase superfamily protein	NA	A0A0C5AFC1	Paenibacillus_phage	39.0	1.8e-34
VFI44926.1|1102978_1104328_-	histidine kinase	NA	W8CYF6	Bacillus_phage	34.6	1.8e-34
VFI44933.1|1104320_1105025_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	39.8	2.8e-39
VFI44940.1|1105079_1106255_-	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
VFI44947.1|1106582_1108253_-	formate-tetrahydrofolate ligase	NA	NA	NA	NA	NA
VFI44955.1|1108482_1109172_+	phosphopantothenate--cysteine ligase	NA	NA	NA	NA	NA
VFI44962.1|1109183_1109735_+	flavoprotein involved in panthothenate metabolism	NA	A0A068EHP1	Penguinpox_virus	37.6	3.1e-25
VFI44969.1|1109718_1110282_+	membrane protein	NA	NA	NA	NA	NA
VFI44975.1|1110563_1111091_+	membrane protein	NA	NA	NA	NA	NA
VFI44982.1|1111102_1111618_+	transcriptional regulator	NA	NA	NA	NA	NA
VFI44990.1|1111614_1112082_-	MutT/nudix family protein	NA	NA	NA	NA	NA
VFI44997.1|1112154_1112643_-	acetyltransferase, gnat family	NA	NA	NA	NA	NA
VFI45004.1|1112608_1113172_-	acetyltransferase	NA	NA	NA	NA	NA
VFI45011.1|1113181_1115170_-	excinuclease ABC subunit B	NA	NA	NA	NA	NA
VFI45018.1|1115246_1116200_-|protease	caax amino protease family protein	protease	NA	NA	NA	NA
VFI45025.1|1116372_1118538_+	glutamine ABC transporter permease	NA	NA	NA	NA	NA
VFI45034.1|1118537_1119278_+	phosphate ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	27.3	3.7e-18
VFI45041.1|1119426_1120914_+	glucose-6-phosphate 1-dehydrogenase	NA	H6WFS4	Cyanophage	32.9	8.4e-70
VFI45048.1|1120959_1122237_-	cell division protein FtsY	NA	NA	NA	NA	NA
VFI45055.1|1122240_1123059_-	Cof family protein	NA	NA	NA	NA	NA
VFI45061.1|1123058_1123853_-	Cof family protein	NA	NA	NA	NA	NA
VFI45069.1|1123849_1127389_-	chromosome condensation and segregation SMC protein	NA	NA	NA	NA	NA
VFI45076.1|1127379_1128078_-	ribonuclease III	NA	J2YAN1	Acanthamoeba_polyphaga_lentillevirus	33.3	1.1e-24
VFI45083.1|1128395_1129382_-	GMP reductase	NA	G3MBI2	Bacillus_virus	72.2	2.4e-137
VFI45091.1|1129556_1130783_-	McrBC 5-methylcytosine restriction system component	NA	NA	NA	NA	NA
VFI45100.1|1130859_1132791_-	endonuclease	NA	K4I1H4	Acidithiobacillus_phage	33.7	1.8e-16
VFI45107.1|1132955_1133126_-	translation factor	NA	NA	NA	NA	NA
VFI45115.1|1133741_1134101_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
VFI45122.1|1134104_1134374_-	membrane protein	NA	NA	NA	NA	NA
VFI45129.1|1134370_1135408_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
VFI45138.1|1135419_1136514_-	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	37.5	9.1e-05
VFI45145.1|1136532_1137189_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VFI45151.1|1137232_1137865_-	copper homeostasis protein	NA	NA	NA	NA	NA
VFI45158.1|1137957_1138317_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
VFI45162.1|1138537_1140625_-	DNA topoisomerase I	NA	A0A1V0SCS0	Indivirus	37.5	8.7e-105
VFI45170.1|1140792_1141836_-	membrane protein	NA	NA	NA	NA	NA
VFI45178.1|1142719_1143568_-	DNA processing protein DprA	NA	S6BFL3	Thermus_phage	39.5	4.2e-34
VFI45186.1|1143665_1144355_-|holin	CTP:phosphocholine cytidylyltransferase	holin	A0A127AW70	Bacillus_phage	45.0	3.4e-05
VFI45193.1|1144366_1145245_-	drug/metabolite transporter (DMT) superfamily permease	NA	NA	NA	NA	NA
VFI45201.1|1145234_1146104_-|holin	choline kinase	holin	NA	NA	NA	NA
VFI45208.1|1146120_1147143_-	zinc-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
VFI45215.1|1147147_1147855_-	cytidylyltransferase	NA	NA	NA	NA	NA
VFI45222.1|1148210_1149698_+	teichoic acid subunit flippase	NA	NA	NA	NA	NA
VFI45231.1|1149707_1150511_+|holin	phosphorylcholine transferase LicD1	holin	A0A1V0SD50	Indivirus	27.1	4.0e-10
>prophage 13
LR216064	Streptococcus pneumoniae isolate 569492b0-41bd-11e5-998e-3c4a9275d6c6 genome assembly, chromosome: 1	2066251	1179737	1199359	2066251	protease,transposase	Bacillus_phage(66.67%)	23	NA	NA
VFI45432.1|1179737_1179899_+|transposase	transposase	transposase	NA	NA	NA	NA
VFI45438.1|1179976_1180243_+|transposase	transposase	transposase	NA	NA	NA	NA
VFI45444.1|1180274_1180784_+|transposase	transposase family protein	transposase	NA	NA	NA	NA
VFI45449.1|1180828_1181278_-	cryptic beta-D-galactosidase subunit beta	NA	NA	NA	NA	NA
VFI45455.1|1181567_1181657_-	Cytidine deaminase	NA	NA	NA	NA	NA
VFI45461.1|1181782_1182238_-	diadenosine tetraphosphate	NA	NA	NA	NA	NA
VFI45468.1|1182259_1183720_-	dihydrolipoamide dehydrogenase	NA	NA	NA	NA	NA
VFI45476.1|1183782_1185360_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
VFI45482.1|1185428_1186868_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI45488.1|1186881_1187811_-	protein LplC	NA	NA	NA	NA	NA
VFI45494.1|1187821_1188754_-	protein LplB	NA	NA	NA	NA	NA
VFI45500.1|1188754_1189441_-	N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA	NA
VFI45506.1|1190157_1190769_-	phosphosugar-binding transcriptional regulator	NA	NA	NA	NA	NA
VFI45512.1|1191093_1191702_+	Predicted integral membrane protein	NA	NA	NA	NA	NA
VFI45518.1|1191936_1192776_-|transposase	transposase	transposase	A0A1B1P773	Bacillus_phage	50.9	2.8e-62
VFI45524.1|1192751_1193288_-|transposase	IS861 transposase Orf1	transposase	NA	NA	NA	NA
VFI45530.1|1193582_1193720_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI45536.1|1193853_1195173_-	permease	NA	NA	NA	NA	NA
VFI45542.1|1195175_1195916_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.8	7.0e-09
VFI45548.1|1195930_1196551_-	drug efflux ABC transporter ATP-binding/permease	NA	G9BWD6	Planktothrix_phage	34.2	2.0e-12
VFI45554.1|1196739_1198143_-	lantibiotic synthetase	NA	NA	NA	NA	NA
VFI45560.1|1198432_1198570_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI45566.1|1198771_1199359_-|protease	Tn5253 CAAX amino terminal protease family	protease	NA	NA	NA	NA
>prophage 14
LR216064	Streptococcus pneumoniae isolate 569492b0-41bd-11e5-998e-3c4a9275d6c6 genome assembly, chromosome: 1	2066251	1283962	1325417	2066251	transposase,tRNA	Streptococcus_phage(20.0%)	46	NA	NA
VFI46100.1|1283962_1284115_-|transposase	transposase	transposase	NA	NA	NA	NA
VFI46106.1|1284697_1285495_-|transposase	transposase, ISSmi4	transposase	A0A218MNE7	uncultured_virus	25.3	8.6e-13
VFI46112.1|1285770_1286007_-|transposase	transposase	transposase	NA	NA	NA	NA
VFI46118.1|1285987_1286173_-	IS66 family Orf1	NA	NA	NA	NA	NA
VFI46124.1|1286476_1288039_-	GMP synthase	NA	A0A1V0SH76	Hokovirus	32.8	1.4e-19
VFI46127.1|1288180_1288879_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
VFI46133.1|1288921_1289818_-	membrane protein	NA	NA	NA	NA	NA
VFI46139.1|1289826_1290762_-	beta-lactamase	NA	NA	NA	NA	NA
VFI46145.1|1290758_1291484_-	cppA protein	NA	NA	NA	NA	NA
VFI46151.1|1291567_1292203_-	lysophospholipase l1-like esterase	NA	A0A2K9L661	Tupanvirus	28.2	4.3e-07
VFI46157.1|1292204_1293032_-	hydrolase	NA	NA	NA	NA	NA
VFI46163.1|1293053_1293389_-	poly-gamma-glutamate biosynthesis protein	NA	NA	NA	NA	NA
VFI46169.1|1293389_1293902_-	enzyme of poly-gamma-glutamate biosynthesis	NA	A0A0N9SJ77	Staphylococcus_phage	31.4	1.6e-15
VFI46175.1|1294630_1295242_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.4	4.9e-16
VFI46181.1|1295286_1296015_+	TrmH family RNA methyltransferase group 3	NA	NA	NA	NA	NA
VFI46187.1|1296053_1296965_-	thioredoxin reductase	NA	G3MA85	Bacillus_virus	51.5	1.0e-89
VFI46193.1|1297030_1297255_-	membrane associated protein	NA	NA	NA	NA	NA
VFI46199.1|1297332_1298076_-	aspartate/glutamate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.5	4.7e-29
VFI46205.1|1298075_1298876_-	aspartate/glutamate ABC transporter permease	NA	NA	NA	NA	NA
VFI46211.1|1299033_1299390_-	ArsC family protein	NA	M1PLC0	Streptococcus_phage	57.3	2.0e-33
VFI46217.1|1299383_1299914_-	O6-methylguanine-DNA methyltransferase	NA	M1PFU9	Streptococcus_phage	54.3	1.4e-46
VFI46223.1|1299913_1300408_-	acetyltransferase, GNAT family protein	NA	M1PSC3	Streptococcus_phage	52.1	1.9e-42
VFI46229.1|1300542_1300989_+	BS_ykrK family protein	NA	NA	NA	NA	NA
VFI46235.1|1300985_1301633_+	hlyIII superfamily protein	NA	NA	NA	NA	NA
VFI46241.1|1301653_1302235_-	glutamine amidotransferase subunit PdxT	NA	NA	NA	NA	NA
VFI46247.1|1302235_1303111_-	pyridoxal biosynthesis lyase PdxS	NA	NA	NA	NA	NA
VFI46253.1|1303262_1304642_-	NADH oxidase	NA	NA	NA	NA	NA
VFI46259.1|1304934_1305858_+	thiamine biosynthesis lipoprotein	NA	NA	NA	NA	NA
VFI46265.1|1305917_1306523_+	NADPH-dependent FMN reductase domain-containing protein	NA	A0A2P0ZL77	Lactobacillus_phage	54.2	7.7e-54
VFI46272.1|1306541_1307786_+	flavin reductase	NA	A0A2P0ZL82	Lactobacillus_phage	52.7	1.7e-55
VFI46278.1|1308008_1308266_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VFI46285.1|1308307_1310344_-|tRNA	glycyl-tRNA synthetase beta subunit	tRNA	NA	NA	NA	NA
VFI46291.1|1310603_1311521_-|tRNA	glycyl-tRNA synthetase alpha subunit	tRNA	NA	NA	NA	NA
VFI46299.1|1311712_1312474_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI46305.1|1312746_1313589_-	2,5-diketo-D-gluconic acid reductase A	NA	A0A2H4PQR8	Staphylococcus_phage	40.2	1.7e-51
VFI46311.1|1313702_1315145_-	peptidoglycan N-acetylglucosamine deacetylase A	NA	NA	NA	NA	NA
VFI46317.1|1315328_1315706_-	ribose-phosphate pyrophosphokinase	NA	NA	NA	NA	NA
VFI46323.1|1315830_1316808_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
VFI46329.1|1316804_1317887_+	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	31.3	1.8e-37
VFI46335.1|1317950_1318217_-|transposase	transposase family protein	transposase	NA	NA	NA	NA
VFI46341.1|1318194_1318374_-|transposase	transposase	transposase	NA	NA	NA	NA
VFI46347.1|1319355_1320552_-	elongation factor Tu	NA	A0A076FFS6	Aureococcus_anophage	29.6	7.3e-32
VFI46353.1|1321484_1322354_-	glycerol facilitator-aquaporin	NA	NA	NA	NA	NA
VFI46359.1|1323054_1324161_-	putative sortase-sorted surface anchored protein (pseudogene)	NA	NA	NA	NA	NA
VFI46365.1|1324271_1324526_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI46371.1|1324883_1325417_-|transposase	degenerate transposase	transposase	NA	NA	NA	NA
>prophage 15
LR216064	Streptococcus pneumoniae isolate 569492b0-41bd-11e5-998e-3c4a9275d6c6 genome assembly, chromosome: 1	2066251	1391009	1397763	2066251	protease	Streptococcus_phage(50.0%)	9	NA	NA
VFI46771.1|1391009_1391978_+	thioredoxin reductase	NA	Q9JRK7	Streptococcus_phage	100.0	2.8e-66
VFI46777.1|1392011_1392923_-	putative sporulation transcription regulator whiA	NA	Q7AWZ3	Streptococcus_phage	100.0	2.3e-155
VFI46783.1|1392919_1393897_-	transporter	NA	A1IMD5	Streptococcus_phage	99.7	3.4e-184
VFI46785.1|1393893_1394784_-	P-loop-containing kinase	NA	A0A0R8VB27	Thermobifida_phage	29.8	3.9e-06
VFI46791.1|1394835_1395216_-	endoribonuclease L-PSP	NA	NA	NA	NA	NA
VFI46797.1|1395226_1395814_-	ribosome biogenesis GTP-binding protein YsxC	NA	NA	NA	NA	NA
VFI46803.1|1395822_1397055_-|protease	ATP-dependent Clp protease, ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	59.0	4.2e-131
VFI46809.1|1397086_1397257_-	membrane associated protein	NA	NA	NA	NA	NA
VFI46815.1|1397256_1397763_-	dihydrofolate reductase	NA	G3MBI7	Bacillus_virus	43.1	2.3e-27
>prophage 16
LR216064	Streptococcus pneumoniae isolate 569492b0-41bd-11e5-998e-3c4a9275d6c6 genome assembly, chromosome: 1	2066251	1417982	1422886	2066251		Streptococcus_phage(85.71%)	8	NA	NA
VFI46917.1|1417982_1418153_+	CbxX/CfqX family protein	NA	A0A1X9I6E4	Streptococcus_phage	98.2	3.7e-22
VFI46924.1|1418538_1419756_+	macrolide-efflux protein	NA	A0A2K5B2B5	Erysipelothrix_phage	90.6	5.1e-198
VFI46930.1|1419875_1421339_+	Ribose import ATP-binding protein rbsA	NA	A0A1B0RXA0	Streptococcus_phage	97.3	3.7e-251
VFI46936.1|1421456_1421756_-	Uncharacterised protein	NA	A0A1B0RX98	Streptococcus_phage	96.0	1.8e-48
VFI46942.1|1421742_1422111_-	YolD-like protein	NA	A0A1B0RXA8	Streptococcus_phage	97.5	1.1e-58
VFI46948.1|1422123_1422459_-	ImpB/MucB/SamB family protein	NA	NA	NA	NA	NA
VFI46954.1|1422455_1422701_-	Orf5	NA	A0A1B0RXA7	Streptococcus_phage	98.8	2.6e-37
VFI46960.1|1422697_1422886_-	DNA polymerase IV	NA	Q6DMX4	Streptococcus_phage	90.7	1.5e-13
>prophage 17
LR216064	Streptococcus pneumoniae isolate 569492b0-41bd-11e5-998e-3c4a9275d6c6 genome assembly, chromosome: 1	2066251	1672701	1726255	2066251	holin,transposase,integrase	Streptococcus_phage(25.0%)	54	1666988:1667012	1700355:1700379
1666988:1667012	attL	TAATACTCTTCGAAAATCTCTTCAA	NA	NA	NA	NA
VFI48157.1|1672701_1673220_+|transposase	degenerate transposase	transposase	A0A1S5SBP9	Streptococcus_phage	98.7	1.6e-84
VFI48161.1|1673216_1673504_+|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	69.4	3.7e-22
VFI48165.1|1673500_1674028_+|transposase	IS1167, transposase	transposase	A0A1S5SBP9	Streptococcus_phage	96.6	1.3e-89
VFI48169.1|1674074_1674479_-	thioesterase	NA	NA	NA	NA	NA
VFI48173.1|1674548_1676030_-	galactose-1-phosphate uridylyltransferase	NA	NA	NA	NA	NA
VFI48177.1|1676048_1677227_-	galactokinase, (galactose kinase)	NA	NA	NA	NA	NA
VFI48181.1|1677390_1678398_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
VFI48185.1|1678444_1679482_-	zinc-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
VFI48189.1|1679482_1679836_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
VFI48193.1|1680079_1680970_-	cation efflux system protein	NA	NA	NA	NA	NA
VFI48197.1|1681102_1681639_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
VFI48201.1|1681804_1682611_-	transporter	NA	A0A2K9VCL6	Lactobacillus_phage	28.0	6.5e-16
VFI48205.1|1682955_1684476_-|holin	choline transporter	holin	NA	NA	NA	NA
VFI48209.1|1684468_1685197_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	41.2	9.0e-33
VFI48213.1|1685211_1685976_-	lipoprotein	NA	NA	NA	NA	NA
VFI48217.1|1685979_1686423_-	transcriptional regulator, MarR family	NA	NA	NA	NA	NA
VFI48222.1|1687226_1687400_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI48226.1|1687421_1688486_-	glutamyl aminopeptidase	NA	NA	NA	NA	NA
VFI48230.1|1688886_1689588_+	putative UDP-glucose 4-epimerase	NA	A0A2K9L1R4	Tupanvirus	36.5	1.2e-34
VFI48234.1|1690010_1690970_+	iron-compound ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	40.8	4.0e-57
VFI48238.1|1690959_1691916_+	ferric iron ABC transporter membrane-spanning permease	NA	NA	NA	NA	NA
VFI48242.1|1691912_1692665_+	ferrichrome transport ATP-binding protein FhuC	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	28.1	5.6e-14
VFI48246.1|1692760_1693726_+	iron-compound ABC transporter iron-compound-binding protein	NA	NA	NA	NA	NA
VFI48250.1|1693950_1694193_-	alpha-hemolysin family protein	NA	A0A2H4PQM5	Staphylococcus_phage	59.4	1.3e-17
VFI48254.1|1694192_1694915_-	ribosomal large subunit pseudouridine synthase B	NA	NA	NA	NA	NA
VFI48258.1|1694901_1695471_-	segregation and condensation protein B	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	34.9	5.0e-15
VFI48262.1|1695489_1696218_-	segregation and condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	22.3	5.3e-09
VFI48266.1|1696217_1696952_-|integrase	integrase	integrase	NA	NA	NA	NA
VFI48270.1|1696948_1697410_-	CBS domain-containing protein	NA	NA	NA	NA	NA
VFI48274.1|1697406_1697928_-	phosphodiesterase, family	NA	NA	NA	NA	NA
VFI48278.1|1697903_1698875_-	deoxyribonucleotide triphosphate pyrophosphatase/uncharacterised domain fusion protein	NA	C4N227	Ugandan_cassava_brown_streak_virus	29.9	4.9e-10
VFI48282.1|1698871_1699666_-	glutamate racemase, COG0796	NA	NA	NA	NA	NA
VFI48286.1|1699872_1700121_-	family protein	NA	NA	NA	NA	NA
VFI48290.1|1700376_1702002_-	alpha,alpha-phosphotrehalase	NA	NA	NA	NA	NA
1700355:1700379	attR	TTGAAGAGATTTTCGAAGAGTATTA	NA	NA	NA	NA
VFI48294.1|1702179_1704147_-	trehalose PTS system, IIABC components	NA	NA	NA	NA	NA
VFI48297.1|1704331_1705042_+	trehalose operon repressor	NA	NA	NA	NA	NA
VFI48300.1|1705074_1705878_-	ABC transporter ATPase	NA	A0A1V0SE00	Indivirus	22.4	8.2e-11
VFI48303.1|1705890_1706784_-	ABC transporter permease	NA	NA	NA	NA	NA
VFI48306.1|1706795_1707104_-	ABC transporter periplasmic	NA	NA	NA	NA	NA
VFI48309.1|1707218_1707605_-	ABC transporter periplasmic	NA	NA	NA	NA	NA
VFI48312.1|1708223_1709150_-	oligopeptide ABC transporter ATP-binding protein AmiF	NA	G9BWD6	Planktothrix_phage	34.1	2.0e-21
VFI48315.1|1709160_1710228_-	peptide ABC transporter ATP-binding protein	NA	A0A2R8FFL6	Cedratvirus	24.7	6.6e-08
VFI48318.1|1710236_1711163_-	peptide ABC transporter permease	NA	NA	NA	NA	NA
VFI48321.1|1711162_1712659_-	peptide ABC transporter permease	NA	NA	NA	NA	NA
VFI48324.1|1712725_1714705_-	oligopeptide-binding protein AmiA	NA	NA	NA	NA	NA
VFI48327.1|1715390_1716584_-	O-Antigen Polymerase family	NA	NA	NA	NA	NA
VFI48330.1|1716721_1718164_-	sucrose phosphorylase	NA	NA	NA	NA	NA
VFI48333.1|1718483_1719317_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
VFI48336.1|1719330_1720197_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
VFI48339.1|1720210_1721470_-	sugar ABC transporter binding protein	NA	NA	NA	NA	NA
VFI48342.1|1721504_1723667_-	alpha-galactosidase	NA	NA	NA	NA	NA
VFI48345.1|1723774_1724635_+	Msm operon regulatory protein	NA	NA	NA	NA	NA
VFI48348.1|1724631_1725567_+	bifunctional protein, biotin operon repressor; biotin--[acetyl-CoA-carboxylase] synthetase	NA	NA	NA	NA	NA
VFI48351.1|1725817_1726255_+|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	91.2	1.9e-22
>prophage 18
LR216064	Streptococcus pneumoniae isolate 569492b0-41bd-11e5-998e-3c4a9275d6c6 genome assembly, chromosome: 1	2066251	1736693	1777854	2066251	protease,transposase,tRNA,bacteriocin	Streptococcus_phage(44.44%)	48	NA	NA
VFI48368.1|1736693_1737476_+|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	86.0	1.7e-117
VFI48371.1|1737472_1738000_+|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	96.6	4.4e-90
VFI48374.1|1738099_1739722_-	chaperone GroEL	NA	A0A219YK78	uncultured_virus	56.1	2.3e-153
VFI48377.1|1739737_1740022_-	CH10_SMI 10 kDa chaperonin (protein Cpn10)	NA	NA	NA	NA	NA
VFI48380.1|1740177_1740573_-	single-strand DNA-binding protein B	NA	A1EAD1	Streptococcus_phage	45.5	4.0e-27
VFI48383.1|1740650_1741412_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
VFI48386.1|1741453_1742080_-|tRNA	phenylalanyl-tRNA synthetase, beta subunit	tRNA	NA	NA	NA	NA
VFI48389.1|1742095_1742413_-	thioredoxin family protein	NA	NA	NA	NA	NA
VFI48392.1|1742409_1742709_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI48395.1|1743397_1744072_-	putative uncharacterized conserved secreted protein	NA	NA	NA	NA	NA
VFI48398.1|1744077_1744524_-	transcriptional regulator	NA	NA	NA	NA	NA
VFI48401.1|1744637_1745141_-	membrane-associated phospholipid phosphatase	NA	NA	NA	NA	NA
VFI48404.1|1745137_1745500_-	Lin0147	NA	NA	NA	NA	NA
VFI48407.1|1745565_1746597_-	multidrug resistance protein 3	NA	W8CYL7	Bacillus_phage	28.5	1.4e-15
VFI48410.1|1746603_1746843_-	ABC transporter permease	NA	NA	NA	NA	NA
VFI48413.1|1746814_1747414_-	ABC transporter permeae	NA	NA	NA	NA	NA
VFI48415.1|1747452_1747902_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
VFI48418.1|1748025_1748742_-	glucose-1-phosphate adenylyl transferase	NA	NA	NA	NA	NA
VFI48421.1|1749624_1751040_-	pneumolysin	NA	NA	NA	NA	NA
VFI48424.1|1751050_1751461_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI48426.1|1751453_1752062_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI48429.1|1752074_1752533_-	membrane protein	NA	NA	NA	NA	NA
VFI48432.1|1752657_1752789_+	mobile genetic element	NA	NA	NA	NA	NA
VFI48435.1|1753794_1754055_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI48438.1|1754113_1754665_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI48441.1|1754654_1755650_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI48444.1|1756057_1756315_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI48447.1|1756475_1756970_-	zinc metallopeptidase	NA	NA	NA	NA	NA
VFI48450.1|1757015_1757222_-	zinc metallopeptidase	NA	NA	NA	NA	NA
VFI48453.1|1757208_1757364_-	type II restriction-modification system regulatory protein	NA	NA	NA	NA	NA
VFI48456.1|1757715_1758672_-	autolysin	NA	A0A1S5SE15	Streptococcus_phage	95.9	2.7e-154
VFI48459.1|1759047_1760418_-	damage inducible DinF protein	NA	NA	NA	NA	NA
VFI48462.1|1760723_1761890_-	protein RecA	NA	A0A0S2MVG1	Bacillus_phage	61.7	3.5e-119
VFI48465.1|1761944_1763201_-	damage inducible protein CinA	NA	NA	NA	NA	NA
VFI48468.1|1763285_1764302_-	regulator of lytrabc operon	NA	NA	NA	NA	NA
VFI48471.1|1764309_1764828_-	GNAT family acetyltransferase	NA	NA	NA	NA	NA
VFI48473.1|1764817_1765261_-	putative ATPase	NA	NA	NA	NA	NA
VFI48476.1|1765346_1765967_-	lipoprotein, putative	NA	NA	NA	NA	NA
VFI48479.1|1766349_1767213_-	transcriptional regulator	NA	NA	NA	NA	NA
VFI48482.1|1767405_1767576_+	secreted protein	NA	NA	NA	NA	NA
VFI48485.1|1767678_1767903_+	type 2 lantibiotic, SP_1948 family	NA	NA	NA	NA	NA
VFI48488.1|1767909_1768098_+	type 2 lantibiotic, SP_1948 family	NA	NA	NA	NA	NA
VFI48491.1|1768213_1771204_+	lantibiotic modifying enzyme	NA	NA	NA	NA	NA
VFI48494.1|1771553_1772258_+	putative reductase	NA	NA	NA	NA	NA
VFI48497.1|1772238_1773168_+|protease	Zn-dependent proteases	protease	NA	NA	NA	NA
VFI48500.1|1773164_1775273_+|bacteriocin	bacteriocin secretion/processing ATP-binding protein	bacteriocin	W8CYL7	Bacillus_phage	27.7	2.2e-23
VFI48503.1|1775296_1777036_+|protease	lantibiotic leader peptide processing serine protease	protease	A0A2H4PQH1	Staphylococcus_phage	39.5	4.2e-52
VFI48505.1|1777098_1777854_+|bacteriocin	bacteriocin-associated integral membrane protein	bacteriocin	NA	NA	NA	NA
>prophage 19
LR216064	Streptococcus pneumoniae isolate 569492b0-41bd-11e5-998e-3c4a9275d6c6 genome assembly, chromosome: 1	2066251	1896688	1954862	2066251	protease,holin,transposase,tRNA	Bacillus_phage(33.33%)	60	NA	NA
VFI48836.1|1896688_1897153_-|transposase	transposase-like protein, IS1381 ISSpn7	transposase	NA	NA	NA	NA
VFI48839.1|1897416_1897719_+	Uncharacterized conserved protein	NA	NA	NA	NA	NA
VFI48842.1|1897802_1898510_+	response regulator	NA	W8CYM9	Bacillus_phage	39.6	1.4e-38
VFI48845.1|1898510_1899842_+	histidine kinase PnpS	NA	W8CYF6	Bacillus_phage	34.9	1.9e-33
VFI48848.1|1900008_1900884_+	phosphate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
VFI48850.1|1901001_1901865_+	phosphate ABC transporter permeae PstC	NA	NA	NA	NA	NA
VFI48853.1|1901857_1902673_+	phosphate ABC transporter	NA	NA	NA	NA	NA
VFI48856.1|1902674_1903427_+	phosphate transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	27.4	3.9e-15
VFI48858.1|1903441_1904092_+	phosphate transport system regulatory protein PhoU	NA	NA	NA	NA	NA
VFI48861.1|1904159_1904576_+|transposase	transposase, IS1380-Spn1 related, truncation	transposase	NA	NA	NA	NA
VFI48864.1|1904698_1905181_-	transcriptional regulator	NA	NA	NA	NA	NA
VFI48867.1|1905350_1906367_+	glycerol-3-phosphate dehydrogenase (NAD(P)+)	NA	NA	NA	NA	NA
VFI48869.1|1906388_1907288_+	UTP-glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	50.3	3.1e-75
VFI48872.1|1907354_1908032_-	peptidase, S54	NA	NA	NA	NA	NA
VFI48875.1|1908015_1908555_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
VFI48878.1|1908566_1909697_-	GlpG protein (membrane protein of glp regulon)	NA	NA	NA	NA	NA
VFI48881.1|1909764_1910463_-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase	NA	NA	NA	NA	NA
VFI48884.1|1910692_1911604_-	drug/metabolite transporter (DMT) superfamily permease	NA	NA	NA	NA	NA
VFI48886.1|1911668_1914134_-	penicillin-binding protein 1B	NA	NA	NA	NA	NA
VFI48889.1|1914275_1915532_+|tRNA	tyrosine--tRNA ligase	tRNA	A0A2C9CYK4	Yersinia_phage	41.5	2.5e-75
VFI48892.1|1915609_1917673_-	P-type ATPase-metal/cation transporter	NA	E4ZFI9	Streptococcus_phage	26.0	2.2e-52
VFI48894.1|1917674_1917953_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI48897.1|1918104_1918953_+	23S_rRNA m1G745 methyltransferase	NA	NA	NA	NA	NA
VFI48900.1|1919751_1920324_+	membrane protein	NA	NA	NA	NA	NA
VFI48903.1|1920864_1921011_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI48905.1|1921367_1923626_-	maltodextrin phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	37.5	5.7e-09
VFI48908.1|1923651_1925169_-	4-alpha-glucanotransferase (amylomaltase)	NA	NA	NA	NA	NA
VFI48911.1|1925718_1926990_+	maltose/maltodextrin ABC transporter maltose /maltodextrin-binding protein	NA	NA	NA	NA	NA
VFI48914.1|1927100_1928393_+	maltodextrin ABC transporter permease	NA	NA	NA	NA	NA
VFI48917.1|1928394_1929237_+	maltodextrin ABC transporter permease	NA	NA	NA	NA	NA
VFI48920.1|1929489_1930290_+	malA-protein	NA	NA	NA	NA	NA
VFI48922.1|1930299_1931286_+	maltose operon transcriptional repressor	NA	NA	NA	NA	NA
VFI48925.1|1931352_1931631_+	N-ethylammeline chlorohydrolase	NA	NA	NA	NA	NA
VFI48928.1|1931666_1932608_-	YitT family protein	NA	NA	NA	NA	NA
VFI48931.1|1932585_1934349_-|tRNA	aspartyl-tRNA synthetase (aspartate-tRNA ligase)	tRNA	A0A1V0SJ84	Klosneuvirus	26.4	5.0e-13
VFI48934.1|1934467_1934659_-	N-ethylammeline chlorohydrolase	NA	NA	NA	NA	NA
VFI48937.1|1934700_1934931_-	excreted peptide	NA	NA	NA	NA	NA
VFI48939.1|1934948_1935590_-|protease	caax amino protease family protein	protease	NA	NA	NA	NA
VFI48942.1|1935601_1936336_-	brp/Blh family beta-carotene 15,15'-monooxygenase	NA	NA	NA	NA	NA
VFI48945.1|1936338_1936536_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI48948.1|1936535_1936751_-	transcriptional regulator	NA	NA	NA	NA	NA
VFI48951.1|1936751_1937066_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI48954.1|1937451_1938741_-|tRNA	histidyl-tRNA synthetase	tRNA	NA	NA	NA	NA
VFI48957.1|1938818_1940066_-	major facilitator superfamily permease	NA	NA	NA	NA	NA
VFI48960.1|1940256_1941108_-	transcriptional activator, Rgg/GadR/MutR family protein	NA	NA	NA	NA	NA
VFI48963.1|1941231_1941573_+	domain of uncharacterised function protein	NA	NA	NA	NA	NA
VFI48966.1|1941781_1943485_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
VFI48969.1|1943717_1944650_-	transketolase c-terminal section	NA	NA	NA	NA	NA
VFI48972.1|1944646_1945504_-	transketolase n-terminal section	NA	A0A2K9L6P9	Tupanvirus	31.2	4.2e-29
VFI48975.1|1945507_1946854_-	PTS system, IIC component	NA	NA	NA	NA	NA
VFI48978.1|1946866_1947151_-	PTS system, IIB component	NA	NA	NA	NA	NA
VFI48981.1|1947154_1949185_-	transcriptional regulator, BglG family	NA	NA	NA	NA	NA
VFI48984.1|1949376_1950384_+	integral membrane protein	NA	NA	NA	NA	NA
VFI48987.1|1950386_1950587_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI48990.1|1950738_1950921_+	50S ribosomal protein L32	NA	NA	NA	NA	NA
VFI48993.1|1950936_1951086_+	LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent	NA	NA	NA	NA	NA
VFI48996.1|1951565_1953551_-|holin	choline binding protein PcpA	holin	NA	NA	NA	NA
VFI48999.1|1953885_1954068_+|transposase	degenerate transposase	transposase	NA	NA	NA	NA
VFI49002.1|1954012_1954447_+	mobile genetic element	NA	NA	NA	NA	NA
VFI49005.1|1954472_1954862_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 20
LR216064	Streptococcus pneumoniae isolate 569492b0-41bd-11e5-998e-3c4a9275d6c6 genome assembly, chromosome: 1	2066251	2001675	2050867	2066251	protease,holin,transposase,tRNA	Streptococcus_phage(46.67%)	47	NA	NA
VFI49121.1|2001675_2002479_+|transposase	IS1167, transposase	transposase	A0A1S5SBP9	Streptococcus_phage	92.1	9.3e-140
VFI49124.1|2002831_2004406_-	surface protein PspC	NA	NA	NA	NA	NA
VFI49126.1|2004484_2005012_-	membrane protein	NA	NA	NA	NA	NA
VFI49129.1|2005094_2006435_-	signal transduction histidine kinase	NA	NA	NA	NA	NA
VFI49132.1|2006431_2007085_-	DNA-binding response regulator	NA	NA	NA	NA	NA
VFI49135.1|2007726_2010159_-|protease	ATP-dependent Clp protease, ATP-binding subunit	protease	A0A223W0B1	Agrobacterium_phage	40.6	5.0e-128
VFI49138.1|2010160_2010619_-	CtsR family transcriptional regulator	NA	NA	NA	NA	NA
VFI49141.1|2010737_2011466_-	nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.2	1.0e-28
VFI49144.1|2011465_2012473_-	ABC transportersubstrate-binding protein, nitrate/sulfonate/bicarbonate transport	NA	NA	NA	NA	NA
VFI49147.1|2012511_2013270_-	ABC transporter permease, nitrate/sulfonate/bicarbonate transport	NA	NA	NA	NA	NA
VFI49150.1|2013232_2013523_-	Uncharacterized conserved protein	NA	NA	NA	NA	NA
VFI49152.1|2013778_2015125_-|holin	choline binding protein D	holin	NA	NA	NA	NA
VFI49155.1|2015213_2015480_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VFI49158.1|2015481_2016834_-	DNA replication protein DnaC	NA	A0A1P8VVQ6	Streptococcus_phage	61.3	6.3e-149
VFI49161.1|2016877_2017330_-	50S ribosomal protein L9	NA	NA	NA	NA	NA
VFI49164.1|2017326_2019300_-	DHH family protein	NA	NA	NA	NA	NA
VFI49167.1|2019435_2019984_-	ribosome-associated protein	NA	NA	NA	NA	NA
VFI49170.1|2020063_2020726_-	involved in transformation	NA	NA	NA	NA	NA
VFI49173.1|2020722_2022021_-	helicase ComFA	NA	A0A1X9I5S6	Streptococcus_phage	66.4	7.9e-165
VFI49176.1|2022076_2022712_+	Xaa-Pro dipeptidase	NA	A0A1X9I5T8	Streptococcus_phage	71.5	4.4e-76
VFI49179.1|2022996_2023923_+	cysteine synthase	NA	A0A1X9I5K7	Streptococcus_phage	81.0	1.1e-139
VFI49182.1|2024043_2025084_-	elongation factor Ts	NA	NA	NA	NA	NA
VFI49185.1|2025162_2025942_-	30S ribosomal protein S2	NA	NA	NA	NA	NA
VFI49188.1|2026165_2027344_-	CHAP domain-containing protein	NA	NA	NA	NA	NA
VFI49191.1|2027437_2027932_-	rod shape-determining protein MreD	NA	NA	NA	NA	NA
VFI49194.1|2027931_2028750_-	cell shape determining protein MreC	NA	NA	NA	NA	NA
VFI49197.1|2028808_2029603_-	ABC transporter permease, cobalt transport	NA	NA	NA	NA	NA
VFI49199.1|2029595_2030435_-	cobalt ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	32.6	1.1e-15
VFI49202.1|2030419_2031247_-	ABCtransporter ATP-binding protein cobalt transport	NA	W8CYL7	Bacillus_phage	33.3	3.5e-17
VFI49205.1|2031243_2031789_-	phosphatidylglycerophosphate synthase	NA	NA	NA	NA	NA
VFI49208.1|2031799_2032621_-	transcriptional regulation protein	NA	NA	NA	NA	NA
VFI49211.1|2032662_2033946_-|protease	zinc-dependent protease	protease	A0A1E1EST3	Acanthamoeba_castellanii_mimivirus	30.0	8.4e-18
VFI49214.1|2033942_2035193_-|protease	zinc-dependent protease	protease	A0A1X9I714	Streptococcus_phage	42.3	1.7e-92
VFI49217.1|2035351_2035720_+	S4 domain-containing protein YaaA	NA	A0A1X9I5V8	Streptococcus_phage	57.3	7.0e-18
VFI49221.1|2035722_2036820_+	recombination protein recF	NA	NA	NA	NA	NA
VFI49223.1|2036870_2038349_-	inosine-5-monophosphate dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	2.2e-94
VFI49226.1|2038500_2039526_-|tRNA	tryptophanyl-tRNA synthetase	tRNA	NA	NA	NA	NA
VFI49229.1|2039731_2041354_+	ABC transporter ATPase	NA	A0A2K9L3Z8	Tupanvirus	26.2	3.4e-48
VFI49232.1|2041415_2043968_+	ABC transporter permease component	NA	NA	NA	NA	NA
VFI49235.1|2044068_2044605_-	integral membrane protein	NA	NA	NA	NA	NA
VFI49238.1|2044555_2045560_-	integral membrane protein	NA	NA	NA	NA	NA
VFI49241.1|2045736_2046279_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
VFI49243.1|2046521_2047274_-	response regulator	NA	NA	NA	NA	NA
VFI49246.1|2047270_2048596_-	sensor histidine kinase	NA	NA	NA	NA	NA
VFI49249.1|2048616_2048742_-	competence-stimulating peptide type 2 precursor (csp-2)	NA	NA	NA	NA	NA
VFI49252.1|2049023_2049503_-	rRNA large subunit methyltransferase	NA	NA	NA	NA	NA
VFI49255.1|2049685_2050867_+|protease	trypsin-like serine protease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	26.1	1.5e-16
