The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR216053	Streptococcus pneumoniae strain 2245STDY6106635 genome assembly, chromosome: 1	2240045	37002	79025	2240045	tail,holin,terminase,transposase,integrase	Streptococcus_phage(95.08%)	63	39374:39394	77823:77843
VFI18539.1|37002_37209_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	85.3	4.8e-24
VFI18547.1|37525_37762_+	recombination regulator RecX	NA	NA	NA	NA	NA
VFI18555.1|37950_39279_+	adenylosuccinate synthetase	NA	L7Y4J5	Megavirus	37.1	3.6e-72
39374:39394	attL	CTTTTTCATAATAATCTCCCT	NA	NA	NA	NA
VFI18563.1|39520_40669_-|integrase	integrase	integrase	A0A141E192	Streptococcus_phage	100.0	2.1e-217
VFI18572.1|40840_41755_-	phage protein	NA	E8ZDT3	Streptococcus_phage	100.0	1.1e-155
VFI18580.1|41767_42502_-	phage transcriptional repressor	NA	E8ZDN4	Streptococcus_phage	100.0	6.1e-138
VFI18589.1|42667_42883_+	phage repressor	NA	E8ZDN3	Streptococcus_phage	100.0	2.7e-30
VFI18597.1|42910_43621_+	gp15	NA	E8ZDT0	Streptococcus_phage	100.0	7.4e-133
VFI18605.1|43633_43891_+	phage protein	NA	A0A1S5SEV6	Streptococcus_phage	100.0	1.2e-43
VFI18613.1|43976_44297_+	Putative phage lipoprotein	NA	A0A1S5SCY0	Streptococcus_phage	100.0	1.9e-48
VFI18621.1|44312_44609_+	gp18	NA	A0A1S5SDE3	Streptococcus_phage	100.0	6.2e-49
VFI18625.1|44571_45408_+	gp19	NA	A0A1S5SDA2	Streptococcus_phage	99.6	3.6e-126
VFI18633.1|45395_45554_+	phage protein	NA	A0A1S5SEV3	Streptococcus_phage	100.0	2.8e-24
VFI18641.1|45547_46318_+	DNA replication protein	NA	A0A1S5SD12	Streptococcus_phage	100.0	2.3e-140
VFI18649.1|46332_46527_+	Uncharacterised protein	NA	A0A1S5SGB5	Streptococcus_phage	100.0	1.6e-29
VFI18657.1|46526_47201_+	DNA methylase	NA	A0A1S5S9L2	Streptococcus_phage	100.0	1.9e-133
VFI18665.1|47210_47429_+	phage protein	NA	A0A1S5SCZ1	Streptococcus_phage	100.0	2.1e-38
VFI18673.1|47428_47734_+	Phage protein	NA	A0A1S5SF94	Streptococcus_phage	100.0	1.0e-51
VFI18681.1|47726_47819_+	phage protein	NA	A0A1S5SF60	Streptococcus_phage	100.0	3.3e-09
VFI18689.1|47824_47992_+	phage protein	NA	A0A1S5SF87	Streptococcus_phage	100.0	3.9e-24
VFI18697.1|48162_48477_+	gp24	NA	A0A1S5SDB3	Streptococcus_phage	100.0	2.2e-57
VFI18705.1|48478_49153_+	phage protein	NA	A0A1S5SD64	Streptococcus_phage	100.0	4.0e-128
VFI18713.1|49152_49440_+	Uncharacterised protein	NA	A0A1S5SD24	Streptococcus_phage	100.0	3.0e-48
VFI18721.1|49439_49628_+	Uncharacterised protein	NA	A0A1S5S928	Streptococcus_phage	100.0	5.5e-27
VFI18729.1|49624_49963_+	Uncharacterised protein	NA	A0A1S5SDB9	Streptococcus_phage	100.0	4.7e-61
VFI18737.1|49964_50225_+	gp27	NA	A0A1S5SAN2	Streptococcus_phage	100.0	4.4e-43
VFI18745.1|50224_50683_+	Uncharacterised protein	NA	X2KU19	Streptococcus_phage	100.0	3.6e-72
VFI18753.1|50691_51075_+	phage membrane protein	NA	A0A1S5S9M5	Streptococcus_phage	100.0	8.8e-64
VFI18761.1|51086_51494_+	YopX protein	NA	A0A1S5SCZ9	Streptococcus_phage	100.0	1.1e-77
VFI18769.1|51493_51730_+	gp29	NA	A0A141E175	Streptococcus_phage	100.0	2.1e-39
VFI18777.1|51722_51899_+	Uncharacterised protein	NA	A0A141E174	Streptococcus_phage	100.0	3.7e-25
VFI18785.1|51891_52122_+	transcriptional regulator	NA	A0A1S5SG49	Streptococcus_phage	100.0	1.8e-35
VFI18793.1|52194_52623_+	gp31	NA	E8ZDR4	Streptococcus_phage	100.0	4.6e-69
VFI18801.1|52912_53479_+	gp32	NA	A0A141E172	Streptococcus_phage	100.0	9.9e-104
VFI18809.1|53712_54057_+	HNH endonuclease domain protein	NA	E8ZDL6	Streptococcus_phage	100.0	1.2e-64
VFI18817.1|54195_55659_+	gp34	NA	E8ZDR0	Streptococcus_phage	100.0	2.9e-280
VFI18825.1|55651_57043_+	gp35	NA	E8ZDQ9	Streptococcus_phage	100.0	1.5e-265
VFI18830.1|57032_57272_+	Uncharacterised protein	NA	A0A1S5SD22	Streptococcus_phage	100.0	1.2e-42
VFI18838.1|57324_57555_+	Uncharacterised protein	NA	A0A1S5SGD0	Streptococcus_phage	100.0	6.7e-35
VFI18846.1|57605_59018_+|terminase	phage terminase large subunit	terminase	A0A126GGI1	Streptococcus_phage	100.0	2.3e-279
VFI18854.1|59100_59565_+	gp39	NA	A0A126GGH5	Streptococcus_phage	100.0	8.4e-77
VFI18862.1|59571_60468_+	phage structural protein	NA	A0A126GGI3	Streptococcus_phage	100.0	3.1e-168
VFI18870.1|60473_60686_+	phage protein	NA	A0A1S5SD43	Streptococcus_phage	100.0	1.4e-31
VFI18878.1|60689_61130_+	gp42	NA	A0A126GGH6	Streptococcus_phage	100.0	5.2e-76
VFI18886.1|61074_61413_+	gp43	NA	A0A1S5SDD8	Streptococcus_phage	100.0	1.4e-60
VFI18894.1|61405_61642_+	phage protein	NA	A0A1S5SD20	Streptococcus_phage	100.0	9.9e-34
VFI18902.1|61638_61974_+	gp45	NA	A0A1S5SG59	Streptococcus_phage	100.0	3.1e-57
VFI18908.1|62040_62598_+|tail	major tail protein	tail	A0A126GGH8	Streptococcus_phage	100.0	3.2e-99
VFI18916.1|62603_62879_+	phage protein	NA	E8ZDK2	Streptococcus_phage	100.0	1.2e-43
VFI18924.1|62890_63277_+	phage protein	NA	E8ZDP6	Streptococcus_phage	100.0	1.6e-65
VFI18933.1|63276_65742_+	PblA	NA	A0A141E161	Streptococcus_phage	100.0	1.0e-253
VFI18941.1|65741_66440_+	phage protein	NA	E8ZDP4	Streptococcus_phage	100.0	2.5e-133
VFI18949.1|66436_74536_+	PblB	NA	A0A1S5SD51	Streptococcus_phage	100.0	0.0e+00
VFI18957.1|74532_74649_+	phage protein	NA	A0A1S5SCF0	Streptococcus_phage	100.0	4.0e-12
VFI18965.1|74629_74833_+	phage protein	NA	X2KU40	Streptococcus_phage	100.0	1.1e-25
VFI18973.1|74835_75186_+	phage protein	NA	A0A1S5SD29	Streptococcus_phage	100.0	6.2e-64
VFI18982.1|75195_75612_+|holin	putative holin 1	holin	A0A1S5SCE8	Streptococcus_phage	100.0	1.9e-67
VFI18990.1|75615_75951_+|holin	phage holin, LL-H family	holin	A0A1S5SD41	Streptococcus_phage	100.0	1.5e-51
VFI18998.1|75950_76907_+	autolysin	NA	A0A1S5SD25	Streptococcus_phage	100.0	7.9e-162
VFI19006.1|77176_77356_-	DNA-binding protein	NA	Q3BLW4	Phage_SK137	96.6	3.5e-23
VFI19014.1|77357_77654_-	Uncharacterised protein	NA	C5J952	Streptococcus_phage	91.8	9.0e-16
VFI19022.1|77928_78396_+	cytidine/deoxycytidylate deaminase	NA	NA	NA	NA	NA
77823:77843	attR	CTTTTTCATAATAATCTCCCT	NA	NA	NA	NA
VFI19030.1|78581_79025_+	deoxyuridine 5'-triphosphate nucleotidohydrolase	NA	Q2WG49	Clostridium_botulinum_D_phage	47.3	2.1e-29
>prophage 2
LR216053	Streptococcus pneumoniae strain 2245STDY6106635 genome assembly, chromosome: 1	2240045	94420	105876	2240045		Synechococcus_phage(33.33%)	7	NA	NA
VFI19186.1|94420_96574_+	competence factor transporting ATP-binding protein/permease ComA	NA	W8CYL7	Bacillus_phage	28.2	2.7e-45
VFI19194.1|96586_97936_+	competence factor transport protein ComB	NA	NA	NA	NA	NA
VFI19202.1|98105_98813_+	phosphoribosylaminoimidazole-succinocarboxamide synthetase	NA	A0A1D8KNF0	Synechococcus_phage	39.2	1.3e-41
VFI19210.1|99014_102740_+	phosphoribosylformylglycinamidine synthase II (FGAM synthetase)	NA	A6N228	Microbacterium_phage	25.9	5.6e-38
VFI19218.1|102832_104275_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	35.1	5.7e-55
VFI19226.1|104311_105334_+	phosphoribosylaminoimidazole synthetase	NA	A0A1D7SE90	Cyanophage	43.9	1.2e-64
VFI19234.1|105330_105876_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	34.4	2.2e-23
>prophage 3
LR216053	Streptococcus pneumoniae strain 2245STDY6106635 genome assembly, chromosome: 1	2240045	156510	167658	2240045	bacteriocin,transposase	Streptococcus_phage(75.0%)	15	NA	NA
VFI19619.1|156510_156798_+|bacteriocin	bacteriocin, putative	bacteriocin	NA	NA	NA	NA
VFI19627.1|156849_158958_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
VFI19635.1|158954_159596_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.8	4.3e-23
VFI19644.1|159802_160609_+	amino acid ABC transporter periplasmic amino acid-binding protein	NA	NA	NA	NA	NA
VFI19646.1|160625_161045_+	argininosuccinate synthase, truncation	NA	NA	NA	NA	NA
VFI19654.1|161333_161861_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	94.9	5.4e-88
VFI19662.1|161857_162145_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	68.2	4.8e-22
VFI19670.1|162141_162660_-|transposase	IS1167 transposase	transposase	A0A1S5SBP9	Streptococcus_phage	91.1	4.2e-77
VFI19678.1|163569_163734_+	Membrane protein	NA	NA	NA	NA	NA
VFI19686.1|163900_164281_+	Membrane protein	NA	NA	NA	NA	NA
VFI19695.1|164697_165546_-	helix-turn-helix domain protein	NA	NA	NA	NA	NA
VFI19704.1|166011_166350_+	transporter truncation	NA	NA	NA	NA	NA
VFI19712.1|166443_166821_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI19720.1|166974_167187_+	Membrane protein	NA	NA	NA	NA	NA
VFI19728.1|167559_167658_+|bacteriocin	putative bacteriocin	bacteriocin	NA	NA	NA	NA
>prophage 4
LR216053	Streptococcus pneumoniae strain 2245STDY6106635 genome assembly, chromosome: 1	2240045	173720	220286	2240045	protease,tRNA,bacteriocin,transposase	Streptococcus_phage(57.14%)	53	NA	NA
VFI19784.1|173720_173918_+|bacteriocin	putative bacteriocin	bacteriocin	NA	NA	NA	NA
VFI19792.1|174374_174665_+	Lmo2277 protein	NA	M1Q0Z8	Streptococcus_phage	50.0	3.8e-19
VFI19800.1|174633_174879_+	membrane associated protein	NA	M1Q0Z8	Streptococcus_phage	57.6	1.7e-15
VFI19809.1|175164_177090_+	surface protein PspA	NA	NA	NA	NA	NA
VFI19817.1|177490_178612_+|tRNA	tRNA-specific 2-thiouridylase MnmA	tRNA	NA	NA	NA	NA
VFI19825.1|178752_179208_+	mutT/nudix family protein	NA	NA	NA	NA	NA
VFI19834.1|179217_181131_+|tRNA	tRNA uridine 5-carboxymethylaminomethyl modification protein GidA	tRNA	NA	NA	NA	NA
VFI19843.1|181325_183005_-	metallo-beta-lactamase superfamily protein 1	NA	NA	NA	NA	NA
VFI19852.1|183006_183240_-	transcriptional regulator	NA	NA	NA	NA	NA
VFI19860.1|183519_183627_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI19868.1|184057_184210_-|bacteriocin	bacteriocin-type signal sequence domain-containing protein	bacteriocin	NA	NA	NA	NA
VFI19876.1|184211_184397_-	excreted peptide	NA	NA	NA	NA	NA
VFI19885.1|184575_185259_+	molecular chaperone	NA	NA	NA	NA	NA
VFI19893.1|185255_185693_+	acetyltransferase	NA	NA	NA	NA	NA
VFI19902.1|185682_186693_+	O-sialoglycoprotein endopeptidase	NA	NA	NA	NA	NA
VFI19908.1|186732_187119_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	72.4	1.4e-45
VFI19917.1|187109_188039_-|transposase	IS1193, transposase, ISL3 family	transposase	A0A1S5SBP9	Streptococcus_phage	63.6	2.9e-92
VFI19925.1|189308_189863_+	glycosyltransferase involved exopolysaccharide (EPS) synthesis	NA	NA	NA	NA	NA
VFI19933.1|190071_190452_+	glycosyl transferase family protein	NA	NA	NA	NA	NA
VFI19941.1|190553_191429_+	glycosyltransferase	NA	NA	NA	NA	NA
VFI19949.1|191438_193055_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	36.0	3.0e-28
VFI19957.1|193074_193221_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI19965.1|193755_194505_+	N-acetylglucosaminylphosphatidylinositol deacetylase superfamily	NA	NA	NA	NA	NA
VFI19972.1|194517_194670_+	UDP-glucose 6-dehydrogenase	NA	NA	NA	NA	NA
VFI19981.1|194941_195559_+	UDP-glucose 6-dehydrogenase	NA	M1IJ73	Paramecium_bursaria_Chlorella_virus	48.0	2.9e-48
VFI19989.1|196075_196939_+	transcriptional regulator	NA	NA	NA	NA	NA
VFI19996.1|197229_197427_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI20004.1|197494_198160_+|protease	putative metal-dependent membrane protease	protease	NA	NA	NA	NA
VFI20012.1|198231_199458_+	transporter, major facilitator family protein	NA	NA	NA	NA	NA
VFI20020.1|199691_199931_-	chlorohydrolase	NA	NA	NA	NA	NA
VFI20030.1|200001_200658_+	branched-chain amino acid permease	NA	NA	NA	NA	NA
VFI20034.1|200647_200857_+	transmembrane protein	NA	NA	NA	NA	NA
VFI20042.1|201074_201905_+	ABC transporter substrate-binding lipoprotein	NA	NA	NA	NA	NA
VFI20051.1|202058_202913_+	ABC transporter substrate-binding lipoprotein	NA	NA	NA	NA	NA
VFI20060.1|203012_204386_+	deacylase	NA	NA	NA	NA	NA
VFI20068.1|204378_205440_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.7	6.7e-29
VFI20071.1|205441_206134_+	ABC transporter permease	NA	NA	NA	NA	NA
VFI20080.1|206162_206732_-	permease	NA	NA	NA	NA	NA
VFI20088.1|206866_207481_+	putative integral membrane protein	NA	NA	NA	NA	NA
VFI20096.1|207446_209129_+	sensor histidine kinase	NA	NA	NA	NA	NA
VFI20105.1|209140_210427_+	response regulator	NA	NA	NA	NA	NA
VFI20113.1|210478_211012_+	major facilitator superfamily permease	NA	NA	NA	NA	NA
VFI20121.1|211089_211560_+	flavoprotein NrdI	NA	NA	NA	NA	NA
VFI20135.1|211852_213115_-	Nramp family metal ion transporter	NA	NA	NA	NA	NA
VFI20141.1|213424_213883_-	integral membrane protein	NA	NA	NA	NA	NA
VFI20149.1|213879_214320_-	response regulator	NA	NA	NA	NA	NA
VFI20157.1|214903_215770_+	transcriptional regulator	NA	NA	NA	NA	NA
VFI20165.1|215919_216054_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI20173.1|216492_217923_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI20181.1|217919_219095_+	transporter, major facilitator family	NA	NA	NA	NA	NA
VFI20189.1|219228_219597_-|transposase	IS1198 transposase	transposase	NA	NA	NA	NA
VFI20196.1|219927_220122_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
VFI20204.1|220118_220286_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
>prophage 5
LR216053	Streptococcus pneumoniae strain 2245STDY6106635 genome assembly, chromosome: 1	2240045	322041	489708	2240045	holin,protease,tRNA,transposase,integrase	Streptococcus_phage(22.58%)	163	418617:418634	428402:428419
VFI21079.1|322041_322749_+|protease	metal-dependent CAAX amino terminal membrane protease	protease	NA	NA	NA	NA
VFI21087.1|322977_323925_+	dihydropteroate synthase	NA	NA	NA	NA	NA
VFI21096.1|323926_325249_+	dihydrofolate synthetase	NA	NA	NA	NA	NA
VFI21104.1|325229_325784_+	GTP cyclohydrolase	NA	E7DN69	Pneumococcus_phage	44.3	9.8e-40
VFI21112.1|325826_326639_+	bifunctional folate synthesis protein	NA	NA	NA	NA	NA
VFI21120.1|326683_327001_-	Staphylococcal protein of uncharacterised function (DUF960)	NA	NA	NA	NA	NA
VFI21128.1|327357_327804_+	50S ribosomal protein L13	NA	NA	NA	NA	NA
VFI21136.1|327822_328215_+	SSU ribosomal protein S9p (S16e)	NA	NA	NA	NA	NA
VFI21144.1|328927_329266_+	antibiotic biosynthesis monooxygenase subfamily protein	NA	NA	NA	NA	NA
VFI21152.1|329455_330892_+	6-phospho-beta-glucosidase	NA	A0A0B5JD41	Pandoravirus	25.4	1.7e-27
VFI21155.1|330943_331183_+	glutathione synthetase	NA	NA	NA	NA	NA
VFI21164.1|331312_331627_+	PTS system cellobiose transporter subunit IIB	NA	NA	NA	NA	NA
VFI21168.1|331750_333724_+	PTS system transporter subunit IIB	NA	NA	NA	NA	NA
VFI21176.1|333733_334048_+	lichenan-specific phosphotransferase EIIA component	NA	NA	NA	NA	NA
VFI21184.1|334078_334585_+	PTS transporter	NA	NA	NA	NA	NA
VFI21193.1|334664_336011_+	PTS system transporter subunit IIC	NA	NA	NA	NA	NA
VFI21202.1|336918_339132_+	glycosyl hydrolase, family 31	NA	NA	NA	NA	NA
VFI21210.1|339353_339830_-	gluthatione peroxidase	NA	NA	NA	NA	NA
VFI21218.1|340052_343256_+	hyaluronidase	NA	NA	NA	NA	NA
VFI21225.1|343493_344246_-|transposase	putative transposase	transposase	NA	NA	NA	NA
VFI21232.1|344238_344784_-|transposase	putative transposase	transposase	NA	NA	NA	NA
VFI21239.1|345331_345547_+|transposase	truncated IS200 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	38.2	1.5e-07
VFI21246.1|345922_346552_-	keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase	NA	NA	NA	NA	NA
VFI21253.1|346561_347563_-	carbohydrate kinase, PfkB family	NA	NA	NA	NA	NA
VFI21260.1|347593_348235_-	galactose-6-phosphate isomerase subunit LacB	NA	NA	NA	NA	NA
VFI21267.1|348253_349069_-	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
VFI21274.1|349340_349775_+	PTS system sugar-specific transporter subunit EII	NA	NA	NA	NA	NA
VFI21282.1|349786_350977_+	glucuronyl hydrolase	NA	NA	NA	NA	NA
VFI21289.1|350987_351479_+	N-acetylgalactosamine-specific phosphotransferase EIIB	NA	NA	NA	NA	NA
VFI21296.1|351493_352273_+	PTS system, N-acetylgalactosamine-specific IIC component	NA	NA	NA	NA	NA
VFI21303.1|352259_353078_+	PTS system transporter subunit IID	NA	NA	NA	NA	NA
VFI21310.1|353077_353371_+	preprotein translocase subunit YajC	NA	NA	NA	NA	NA
VFI21317.1|353392_355294_+	oligohyaluronate lyase	NA	NA	NA	NA	NA
VFI21324.1|355353_356355_+	sugar binding transcriptional regulator RegR	NA	NA	NA	NA	NA
VFI21331.1|356464_356800_-	membrane protein	NA	NA	NA	NA	NA
VFI21338.1|356810_357053_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI21345.1|357063_357318_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI21352.1|357325_357607_-	membrane protein	NA	NA	NA	NA	NA
VFI21359.1|357622_357817_-	transcriptional regulator	NA	I3VYZ1	Thermoanaerobacterium_phage	42.6	7.2e-06
VFI21366.1|357982_358933_+	S-adenosyl-methyltransferase mraW	NA	NA	NA	NA	NA
VFI21373.1|358944_359262_+	cell division protein FtsL	NA	NA	NA	NA	NA
VFI21381.1|359265_361518_+	penicillin-binding protein 2X	NA	NA	NA	NA	NA
VFI21388.1|361519_362500_+	UDP-phosphate-UDP-MurNAc-pentapeptide phospho-MurNAc-pentapeptide transferase	NA	NA	NA	NA	NA
VFI21394.1|363094_365200_+	Group II intron maturase	NA	H6X3M6	Enterobacteria_phage	37.2	1.4e-115
VFI21400.1|365495_365978_-	S-ribosylhomocysteinase	NA	NA	NA	NA	NA
VFI21407.1|366072_367557_-|protease	ATP-dependent Zn protease	protease	NA	NA	NA	NA
VFI21414.1|367709_369320_+	glucan 1,6-alpha-glucosidase	NA	NA	NA	NA	NA
VFI21421.1|369419_369761_-|transposase	transposase OrfB	transposase	A0A0C5AEA5	Paenibacillus_phage	43.6	1.4e-15
VFI21428.1|369775_370258_-|transposase	transposase	transposase	A0A1B1P773	Bacillus_phage	52.1	5.0e-32
VFI21435.1|370233_370770_-|transposase	transposase	transposase	NA	NA	NA	NA
VFI21442.1|370838_371789_-|transposase	transposase	transposase	A0A146ICT8	Staphylococcus_phage	43.9	5.2e-49
VFI21449.1|371953_373006_-|transposase	transposase for insertion sequence	transposase	NA	NA	NA	NA
VFI21456.1|373182_374628_+	capsular polysaccharide biosynthesis protein Cps14A	NA	A0A1X9I5X1	Streptococcus_phage	57.9	1.2e-126
VFI21463.1|374629_375361_+	tyrosine-protein phosphatase CpsB	NA	NA	NA	NA	NA
VFI21470.1|375369_376062_+	capsular polysaccharide biosynthesis protein Cap5A	NA	A0A1X9I5E1	Streptococcus_phage	53.3	4.6e-55
VFI21477.1|376071_376752_+	tyrosine-protein kinase Wze	NA	A0A1X9I5D6	Streptococcus_phage	61.2	6.8e-75
VFI21484.1|376766_378134_+	galactosyl transferase CpsE	NA	NA	NA	NA	NA
VFI21491.1|378262_379207_+	putative galactosyl transferase	NA	A0A2P0VP84	Tetraselmis_virus	25.4	4.9e-07
VFI21498.1|379306_379801_+	Cps6bQ	NA	NA	NA	NA	NA
VFI21506.1|379787_380507_+	WciO	NA	NA	NA	NA	NA
VFI21513.1|380509_381496_+	rhamnosyl transferase Cps6bS	NA	NA	NA	NA	NA
VFI21520.1|381495_382839_+	oligosaccharide repeat unit polymerase Wzy	NA	NA	NA	NA	NA
VFI21527.1|382972_384385_+	Wzx	NA	NA	NA	NA	NA
VFI21534.1|384873_385743_+	glucose-1-phosphate thymidylyltransferase	NA	K7QKA7	Escherichia_phage	64.6	1.3e-102
VFI21541.1|385743_386340_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	H9NC63	Sphingomonas_phage	33.1	5.1e-10
VFI21548.1|386349_387399_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	44.5	8.3e-72
VFI21555.1|387464_388316_+	dTDP-4-keto-L-rhamnose reductase	NA	A0A291LA50	Escherichia_phage	35.8	8.6e-27
VFI21562.1|388514_388826_+|transposase	transposase	transposase	NA	NA	NA	NA
VFI21569.1|389775_391758_+	oligopeptide ABC transporter oligopeptide-binding protein AliA	NA	NA	NA	NA	NA
VFI21576.1|392058_397371_+	endo-alpha-N-acetylgalactosaminidase	NA	NA	NA	NA	NA
VFI21583.1|397537_399697_-	penicillin-binding protein 1A	NA	NA	NA	NA	NA
VFI21590.1|399693_400290_-	recombination protein U	NA	A0A1L2JY30	Aeribacillus_phage	33.9	1.5e-17
VFI21597.1|400355_400883_+	UPF0398 protein SSU05	NA	NA	NA	NA	NA
VFI21604.1|400952_401282_+	cell division initiation protein	NA	NA	NA	NA	NA
VFI21611.1|401767_402925_+	N-6 adenine-specific DNA methylase	NA	NA	NA	NA	NA
VFI21619.1|402937_404332_+	Holliday junction-specific endonuclease	NA	NA	NA	NA	NA
VFI21626.1|404407_405832_+|holin	choline binding protein J	holin	M4QQM4	Ostreococcus_lucimarinus_virus	29.6	2.1e-41
VFI21633.1|405843_406533_+|holin	choline binding protein J	holin	NA	NA	NA	NA
VFI21640.1|406631_407654_+|holin	choline binding protein C	holin	NA	NA	NA	NA
VFI21647.1|407672_408671_+|holin	choline binding protein J	holin	NA	NA	NA	NA
VFI21654.1|408788_410021_-	major facilitator superfamily permease	NA	NA	NA	NA	NA
VFI21661.1|410063_410888_-	lanthionine synthetase C-like protein	NA	NA	NA	NA	NA
VFI21669.1|411550_411808_+|holin	choline binding protein C	holin	NA	NA	NA	NA
VFI21676.1|412002_412881_+	mevalonate kinase	NA	NA	NA	NA	NA
VFI21683.1|412862_413816_+	diphosphomevalonate decarboxylase	NA	NA	NA	NA	NA
VFI21692.1|413802_414810_+	phosphomevalonate kinase	NA	NA	NA	NA	NA
VFI21699.1|414793_415804_+	isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2	NA	NA	NA	NA	NA
VFI21706.1|415881_416580_+	transporter	NA	NA	NA	NA	NA
VFI21713.1|416576_417572_+	histidine kinase	NA	NA	NA	NA	NA
VFI21720.1|417585_418218_+	response regulator	NA	NA	NA	NA	NA
VFI21727.1|418218_418365_+	putative DNA alkylation repair enzyme	NA	NA	NA	NA	NA
418617:418634	attL	TTCGAAAATCTCTTCAAA	NA	NA	NA	NA
VFI21734.1|419137_419377_+	V8-like Glu-specific endopeptidase	NA	NA	NA	NA	NA
VFI21741.1|419373_420030_+|holin	choline binding protein G	holin	NA	NA	NA	NA
VFI21746.1|419989_420283_+|holin	choline binding protein G	holin	NA	NA	NA	NA
VFI21753.1|420301_421324_+|holin	choline binding protein F	holin	NA	NA	NA	NA
VFI21760.1|421453_422287_-|integrase	integrase core domain-containing protein	integrase	A0A1B1P773	Bacillus_phage	47.4	5.1e-56
VFI21768.1|422286_422454_-|transposase	transposase	transposase	NA	NA	NA	NA
VFI21775.1|422589_422859_-|transposase	degenerate transposase (Orf1)	transposase	NA	NA	NA	NA
VFI21782.1|423010_424780_+	PTS system mannitol-specific transporter subunit EIIBC	NA	NA	NA	NA	NA
VFI21790.1|424803_426759_+	putative transcriptional regulator MtlR	NA	NA	NA	NA	NA
VFI21797.1|426760_427198_+	mannitol-specific phosphotransferase EIIA	NA	NA	NA	NA	NA
VFI21804.1|427259_428396_+	mannitol-1-phosphate 5-dehydrogenase	NA	NA	NA	NA	NA
VFI21812.1|429181_430465_+	FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor)	NA	NA	NA	NA	NA
428402:428419	attR	TTCGAAAATCTCTTCAAA	NA	NA	NA	NA
VFI21819.1|430512_432879_-	recombinase D	NA	A0A0K2FLP8	Brevibacillus_phage	27.1	8.2e-59
VFI21826.1|433006_433621_-	signal peptidase I	NA	NA	NA	NA	NA
VFI21833.1|433624_434506_-	ribonuclease HIII	NA	NA	NA	NA	NA
VFI21840.1|434592_434895_+|tRNA	seryl-tRNA synthetase	tRNA	NA	NA	NA	NA
VFI21847.1|434891_435440_+	CvpA family protein	NA	NA	NA	NA	NA
VFI21854.1|435546_436092_+|transposase	putative transposase	transposase	NA	NA	NA	NA
VFI21861.1|436084_436837_+|transposase	putative transposase	transposase	NA	NA	NA	NA
VFI21868.1|437062_439399_+	mismatch repair ATPase (MutS family)	NA	Q94M10	Lactobacillus_phage	55.1	1.8e-21
VFI21875.1|439741_441064_+	Na+/alanine symporter	NA	NA	NA	NA	NA
VFI21882.1|441281_441830_+	macrophage infectivity potentiator protein	NA	NA	NA	NA	NA
VFI21890.1|441939_442839_+	exfoliative toxin	NA	NA	NA	NA	NA
VFI21897.1|442919_443372_-|tRNA	seryl-tRNA synthetase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	60.8	6.6e-42
VFI21904.1|443349_444138_-|tRNA	seryl-tRNA synthetase	tRNA	NA	NA	NA	NA
VFI21908.1|444351_444723_-	ManO	NA	NA	NA	NA	NA
VFI21915.1|444725_446090_-	aspartate kinase	NA	NA	NA	NA	NA
VFI21922.1|446414_447200_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
VFI21929.1|447293_447728_+	transcription regulator, MarR family	NA	NA	NA	NA	NA
VFI21936.1|447727_448702_+	3-oxoacyl-ACP synthase III	NA	NA	NA	NA	NA
VFI21943.1|448761_448986_+	acyl carrier protein	NA	NA	NA	NA	NA
VFI21950.1|449104_450079_+	putative enoyl-(acyl-carrier-protein) reductase II	NA	NA	NA	NA	NA
VFI21953.1|450071_450992_+	ACP S-malonyltransferase	NA	NA	NA	NA	NA
VFI21960.1|451025_451757_+	3-oxoacyl-ACP reductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	30.9	2.2e-15
VFI21967.1|451778_453014_+	3-oxoacyl-(acyl carrier protein) synthase II	NA	NA	NA	NA	NA
VFI21974.1|453016_453502_+	acetyl-CoA carboxylase	NA	NA	NA	NA	NA
VFI21981.1|453498_453921_+	(3R)-hydroxymyristoyl-ACP dehydratase	NA	NA	NA	NA	NA
VFI21988.1|453932_455300_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
VFI21996.1|455336_456203_+	acetyl-CoA carboxylase beta subunit	NA	NA	NA	NA	NA
VFI22003.1|456199_456967_+	acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit	NA	NA	NA	NA	NA
VFI22010.1|457229_457415_+	excreted peptide	NA	NA	NA	NA	NA
VFI22017.1|457471_458221_+|protease	caax amino protease family protein	protease	NA	NA	NA	NA
VFI22024.1|458334_459117_+|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	91.5	1.1e-113
VFI22031.1|459113_459641_+|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	96.6	7.5e-90
VFI22039.1|459675_460098_-	transcription antitermination protein NusB	NA	NA	NA	NA	NA
VFI22046.1|460090_460480_-	general stress protein, Gls24 family	NA	NA	NA	NA	NA
VFI22053.1|460501_461062_-	Translation elongation factor P	NA	NA	NA	NA	NA
VFI22060.1|461439_462474_-	L-iditol 2-dehydrogenase	NA	A0A2K9L7I1	Tupanvirus	24.4	2.3e-10
VFI22067.1|462593_464036_-|tRNA	glutamyl tRNA-Gln amidotransferase chain B	tRNA	NA	NA	NA	NA
VFI22074.1|464035_465502_-|tRNA	glutamyl-tRNA(Gln) amidotransferase, A subunit	tRNA	NA	NA	NA	NA
VFI22082.1|465501_465804_-|tRNA	aspartyl/glutamyl-tRNA amidotransferase subunit C	tRNA	NA	NA	NA	NA
VFI22089.1|466016_467561_+	regulator of gtfB	NA	A0A1B0RXH7	Streptococcus_phage	28.5	1.4e-35
VFI22093.1|467988_468186_+	glycosyl transferase, family 8	NA	NA	NA	NA	NA
VFI22104.1|468588_468777_+	LSU ribosomal protein L28p	NA	NA	NA	NA	NA
VFI22112.1|468933_469299_+	alkaline shock protein	NA	NA	NA	NA	NA
VFI22119.1|469301_470969_+	kinase	NA	NA	NA	NA	NA
VFI22126.1|471169_472870_+	acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	32.2	1.2e-67
VFI22133.1|472862_473339_+	acetolactate synthase 3 regulatory subunit	NA	NA	NA	NA	NA
VFI22140.1|473404_474427_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
VFI22147.1|474533_474770_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI22154.1|475007_475364_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
VFI22161.1|475413_476664_+	threonine dehydratase	NA	NA	NA	NA	NA
VFI22168.1|477534_477750_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI22176.1|477858_478599_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.4	1.2e-27
VFI22184.1|478598_480164_-	ABC transporter-amino acid transport; amino acid-binding protein/permease protein	NA	NA	NA	NA	NA
VFI22191.1|480301_482191_+	Predicted membrane protein (DUF2207)	NA	NA	NA	NA	NA
VFI22198.1|482389_483040_-|transposase	degenerate transposase	transposase	NA	NA	NA	NA
VFI22205.1|483237_483360_-|transposase	degenerate transposase	transposase	NA	NA	NA	NA
VFI22212.1|483615_484461_+	undecaprenol kinase	NA	NA	NA	NA	NA
VFI22219.1|484607_485669_-	DNA polymerase IV	NA	NA	NA	NA	NA
VFI22226.1|486063_488388_+	pyruvate formate-lyase	NA	A0A2P0VNR5	Tetraselmis_virus	32.9	7.9e-115
VFI22233.1|488445_489708_-|transposase	IS1167, transposase	transposase	A0A1S5SBP9	Streptococcus_phage	57.6	1.4e-129
>prophage 6
LR216053	Streptococcus pneumoniae strain 2245STDY6106635 genome assembly, chromosome: 1	2240045	501094	611620	2240045	protease,tRNA,bacteriocin,transposase,integrase	Bacillus_phage(13.64%)	110	485683:485718	556059:556094
485683:485718	attL	TTATACTCTTCGAAAATCTCTTCAAACCACGTCAGC	NA	NA	NA	NA
VFI22289.1|501094_501856_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	92.9	4.4e-131
VFI22296.1|501852_502371_-|transposase	degenerate transposase	transposase	A0A1S5SBP9	Streptococcus_phage	93.0	7.0e-80
VFI22299.1|502485_502635_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI22306.1|502627_502912_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI22313.1|503523_503694_-|transposase	ISSpo8 transposase	transposase	NA	NA	NA	NA
VFI22322.1|504345_505569_-	ROK family protein	NA	NA	NA	NA	NA
VFI22330.1|505736_507059_+	PTS system cellobiose-specific IIC component	NA	NA	NA	NA	NA
VFI22337.1|507060_508947_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI22344.1|509114_509459_+	lactose-specific phosphotransferase EIIA	NA	NA	NA	NA	NA
VFI22351.1|509468_510881_+	6-phospho-beta-galactosidase	NA	NA	NA	NA	NA
VFI22356.1|510949_512629_+	pts system lactose-specific transporter subunit EIIBC	NA	NA	NA	NA	NA
VFI22364.1|512753_514193_-	potassium uptake protein	NA	NA	NA	NA	NA
VFI22371.1|514196_515546_-	potassium uptake protein	NA	NA	NA	NA	NA
VFI22378.1|515734_516583_+	Molybdate/tungstate binding protein	NA	NA	NA	NA	NA
VFI22385.1|516597_517146_+	protein YdcD	NA	NA	NA	NA	NA
VFI22392.1|517152_517410_+	N-ethylammeline chlorohydrolase	NA	NA	NA	NA	NA
VFI22399.1|517511_519194_+	cobalt ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.9	3.4e-19
VFI22406.1|519178_520009_+	ABC transporter permease	NA	NA	NA	NA	NA
VFI22414.1|520201_520705_+	RNA methyltransferase	NA	NA	NA	NA	NA
VFI22421.1|521157_521721_+	riboflavin transporter	NA	NA	NA	NA	NA
VFI22429.1|521710_522361_+	phosphatase	NA	NA	NA	NA	NA
VFI22436.1|522388_522778_+	putative histone acetyltransferase	NA	NA	NA	NA	NA
VFI22443.1|522782_523232_+	sortase-like acyltransferase	NA	NA	NA	NA	NA
VFI22451.1|523359_523947_+	DNA-dependent RNA Polymerase, delta subunit (RNAP delta factor)	NA	NA	NA	NA	NA
VFI22458.1|524336_525944_+	CTP synthetase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	47.0	8.9e-142
VFI22465.1|526502_528134_-	sodium-dependent phosphate transporter	NA	NA	NA	NA	NA
VFI22472.1|528422_533363_+	endo-beta-N-acetylglucosaminidase	NA	NA	NA	NA	NA
VFI22480.1|533452_534649_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
VFI22487.1|534784_535312_+	signal peptide	NA	NA	NA	NA	NA
VFI22494.1|535388_535745_+	transcriptional repressor of the glutamine synthetase gene	NA	NA	NA	NA	NA
VFI22501.1|535781_537128_+	glutamate-ammonia ligase	NA	NA	NA	NA	NA
VFI22508.1|537307_537457_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI22515.1|537908_539180_+	type I restriction-modification system M protein	NA	A0A1V0SKS6	Klosneuvirus	29.2	6.9e-12
VFI22518.1|539133_539742_-	putative type I restriction-modification system S protein	NA	A0A1V0SLK8	Klosneuvirus	30.1	8.6e-13
VFI22525.1|539752_540550_-|integrase	integrase/recombinase, phage integrase family	integrase	A0A0H4TI16	Erysipelothrix_phage	28.7	1.3e-21
VFI22532.1|540606_542175_-	type I site-specific deoxyribonuclease chain S	NA	NA	NA	NA	NA
VFI22540.1|542174_543638_-	type I restriction-modification system M protein	NA	NA	NA	NA	NA
VFI22548.1|543650_545984_-	type I restriction-modification system, R subunit	NA	Q5YA94	Bacillus_phage	27.6	5.8e-25
VFI22555.1|546355_546556_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI22560.1|546590_547100_+	Protein of uncharacterised function (DUF2812)	NA	NA	NA	NA	NA
VFI22567.1|547263_548298_+	heat-inducible transcription repressor	NA	NA	NA	NA	NA
VFI22574.1|548324_548849_+	heat shock protein GrpE	NA	NA	NA	NA	NA
VFI22581.1|549328_551152_+	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	47.2	1.0e-133
VFI22588.1|551153_551510_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI22593.1|551911_553048_+	dnaJ protein, Heat-shock protein (activation of DnaK)	NA	E3T4P7	Cafeteria_roenbergensis_virus	31.3	2.4e-24
VFI22600.1|553414_553702_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI22607.1|553711_554122_-	protein hit	NA	B5LJ12	Mycobacterium_phage	31.6	4.4e-05
VFI22615.1|554189_554921_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.6	9.0e-25
VFI22622.1|554917_555967_+	ABC transporter permease	NA	NA	NA	NA	NA
VFI22627.1|556134_556464_-	BlpT protein, fusion	NA	NA	NA	NA	NA
556059:556094	attR	TTATACTCTTCGAAAATCTCTTCAAACCACGTCAGC	NA	NA	NA	NA
VFI22634.1|556740_557079_+	regulatory protein, single domain response regulator	NA	NA	NA	NA	NA
VFI22640.1|557083_557821_+	response regulator	NA	NA	NA	NA	NA
VFI22647.1|557834_559175_+	histidine kinase	NA	NA	NA	NA	NA
VFI22655.1|559218_559374_-	double glycine cleavage site bacteriolysin superfamily	NA	NA	NA	NA	NA
VFI22662.1|559430_560792_-	BlpC ABC transporter	NA	NA	NA	NA	NA
VFI22672.1|560802_562956_-	competence factor transporting ATP-binding protein/permease ComA	NA	W8CYL7	Bacillus_phage	27.7	2.4e-41
VFI22679.1|563236_563440_+|bacteriocin	bacteriocin BlpPQ	bacteriocin	NA	NA	NA	NA
VFI22686.1|563757_563961_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI22693.1|564534_564699_+	putative immunity protein	NA	NA	NA	NA	NA
VFI22700.1|564924_565152_+|transposase	degenerate transposase (orf1)	transposase	NA	NA	NA	NA
VFI22707.1|565306_565849_+|transposase	transposase	transposase	NA	NA	NA	NA
VFI22716.1|565920_566175_+	BlpM	NA	NA	NA	NA	NA
VFI22723.1|566190_566394_+	blpN protein	NA	NA	NA	NA	NA
VFI22730.1|566649_566871_+|bacteriocin	putative bacteriocin BlpI	bacteriocin	NA	NA	NA	NA
VFI22736.1|566902_567592_+|protease	metal-dependent CAAX amino terminal membrane protease	protease	NA	NA	NA	NA
VFI22743.1|567633_567867_+	immunity protein BlpZ	NA	NA	NA	NA	NA
VFI22750.1|568017_568629_+|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
VFI22757.1|568789_569584_+	aminoglycoside phosphotransferase	NA	NA	NA	NA	NA
VFI22761.1|569580_570216_+|tRNA	tRNA (guanine-N(7)-)-methyltransferase	tRNA	NA	NA	NA	NA
VFI22769.1|570341_570821_+	SP14.3 protein	NA	NA	NA	NA	NA
VFI22776.1|570876_572001_+	transcription elongation factor NusA	NA	NA	NA	NA	NA
VFI22783.1|572022_572316_+	cytosolic protein YlxR	NA	NA	NA	NA	NA
VFI22790.1|572308_572608_+	L7A family ribosomal protein	NA	NA	NA	NA	NA
VFI22797.1|572624_575417_+	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	22.9	3.3e-19
VFI22804.1|575667_576018_+	ribosome-binding factor A	NA	NA	NA	NA	NA
VFI22811.1|576296_577076_+	ABC transporter ATPase	NA	NA	NA	NA	NA
VFI22816.1|577077_577260_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI22823.1|577256_577385_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI22830.1|577524_577722_-	chlorohydrolase	NA	NA	NA	NA	NA
VFI22832.1|577752_577986_+	Domain of uncharacterised function (DUF1858)	NA	NA	NA	NA	NA
VFI22839.1|577985_579320_+	hemerythrin HHE cation binding domain subfamily	NA	NA	NA	NA	NA
VFI22846.1|579329_579584_+	aldose 1-epimerase	NA	NA	NA	NA	NA
VFI22853.1|579679_580075_+	Helicase	NA	NA	NA	NA	NA
VFI22860.1|580487_580937_+	conserved protein/domain typically associated with flavoprotein oxygenase, Dim6/ntab family	NA	NA	NA	NA	NA
VFI22868.1|580923_581481_+	acetyltransferase, gnat family	NA	NA	NA	NA	NA
VFI22875.1|581482_582445_+	putative uncharacterized protein (hydrophilic)	NA	NA	NA	NA	NA
VFI22882.1|582456_585108_+|tRNA	valyl-tRNA synthetase	tRNA	A0A1V0S951	Catovirus	41.5	3.7e-153
VFI22889.1|585177_585933_+	Zn-finger	NA	NA	NA	NA	NA
VFI22896.1|586217_587021_+	Fic protein family	NA	NA	NA	NA	NA
VFI22903.1|587136_587322_-|transposase	IS3-Spn1 transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	46.7	1.5e-08
VFI22910.1|587318_587624_-|transposase	degenerate transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	51.1	3.5e-15
VFI22917.1|587685_587958_-|transposase	IS3-Spn1 transposase	transposase	A0A1B1P773	Bacillus_phage	49.4	1.7e-13
VFI22924.1|588183_588453_-|transposase	transposase InsK for insertion sequence	transposase	NA	NA	NA	NA
VFI22931.1|588642_589908_+	DNA or RNA helicases of superfamily II	NA	NA	NA	NA	NA
VFI22938.1|590123_591320_+	helicase	NA	I3UKD0	Ostreococcus_lucimarinus_virus	28.4	1.8e-17
VFI22951.1|591619_592459_+	transcription antiterminator LicT	NA	NA	NA	NA	NA
VFI22958.1|592476_594315_+	PTS system beta-glucoside-specific transporter subunit EIIABC	NA	NA	NA	NA	NA
VFI22965.1|594327_595743_+	beta-glucosidase	NA	A0A0B5JD41	Pandoravirus	23.9	1.5e-23
VFI22972.1|596224_597271_+|tRNA	phenylalanyl-tRNA synthetase, alpha chain	tRNA	A0A2I2L4E3	Orpheovirus	32.8	1.6e-27
VFI22979.1|597270_597780_+	acetyltransferase, GNAT family	NA	NA	NA	NA	NA
VFI22986.1|597856_600259_+|tRNA	phenylalanyl-tRNA synthetase, beta chain	tRNA	NA	NA	NA	NA
VFI22993.1|600326_601328_-	endonuclease/exonuclease/phosphatase family	NA	NA	NA	NA	NA
VFI22999.1|601483_601978_+|transposase	transposase	transposase	NA	NA	NA	NA
VFI23007.1|602125_602323_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
VFI23014.1|602583_604833_+	5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase	NA	NA	NA	NA	NA
VFI23021.1|604896_605763_+	5,10-methylenetetrahydrofolate reductase	NA	NA	NA	NA	NA
VFI23028.1|606447_608661_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
VFI23036.1|608676_609294_+	serine O-acetyltransferase	NA	NA	NA	NA	NA
VFI23043.1|609305_610190_+	GNAT family acetyltransferase	NA	NA	NA	NA	NA
VFI23050.1|610276_611620_+|tRNA	cysteinyl-tRNA synthetase	tRNA	M1PG92	Moumouvirus	35.8	1.2e-46
>prophage 7
LR216053	Streptococcus pneumoniae strain 2245STDY6106635 genome assembly, chromosome: 1	2240045	652650	706603	2240045	protease,tRNA,bacteriocin,transposase	Staphylococcus_prophage(25.0%)	42	NA	NA
VFI23335.1|652650_659082_+|protease	serine protease	protease	NA	NA	NA	NA
VFI23342.1|659708_660185_+	PTS system transporter subunit IIA	NA	NA	NA	NA	NA
VFI23349.1|660222_660528_+	PTS system IIB component (galactitol/fructose specific)	NA	NA	NA	NA	NA
VFI23356.1|660575_662051_+	PTS system galactitol-specific family transporter subunit IIC	NA	NA	NA	NA	NA
VFI23363.1|662076_662268_+	chlorohydrolase	NA	NA	NA	NA	NA
VFI23371.1|662355_669057_+	beta-galactosidase	NA	NA	NA	NA	NA
VFI23378.1|669304_669928_-|transposase	transposase	transposase	Q9MBP7	Staphylococcus_prophage	40.0	2.3e-05
VFI23385.1|669915_670161_-|transposase	transposase	transposase	Q9MBP7	Staphylococcus_prophage	44.9	1.0e-12
VFI23392.1|670371_670731_-	integral membrane protein	NA	NA	NA	NA	NA
VFI23399.1|670822_671023_+	radical SAM superfamily protein (pseudogene)	NA	NA	NA	NA	NA
VFI23406.1|671332_671779_+	putative Fe-S oxidoreductase	NA	A0A2H4PQV5	Staphylococcus_phage	50.4	3.8e-34
VFI23411.1|671762_672320_+	SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	41.4	1.1e-33
VFI23418.1|672312_672567_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI23425.1|672578_674633_+	Na+/H+ antiporter	NA	NA	NA	NA	NA
VFI23432.1|674811_675672_+	ribonuclease BN	NA	NA	NA	NA	NA
VFI23439.1|675882_676593_+	cytochrome c-type biogenesis protein	NA	NA	NA	NA	NA
VFI23446.1|676612_677179_+	thioredoxin	NA	NA	NA	NA	NA
VFI23453.1|677189_678302_+	peptide methionine sulfoxide reductase	NA	NA	NA	NA	NA
VFI23460.1|678524_679262_+	DNA-binding response regulator	NA	NA	NA	NA	NA
VFI23467.1|679258_680950_+	histidine kinase	NA	Q9EYF3	Enterobacteria_phage	32.7	9.4e-25
VFI23474.1|681065_681629_+	UPF0340 protein SSU05	NA	NA	NA	NA	NA
VFI23481.1|681650_687560_+|protease	zinc metalloprotease ZmpB	protease	NA	NA	NA	NA
VFI23488.1|687620_689342_+	chorismate binding enzyme para-aminobenzoate synthetase	NA	A0A0B5J984	Pandoravirus	29.7	9.8e-38
VFI23495.1|689461_690988_+	pneumococcal surface protein	NA	NA	NA	NA	NA
VFI23502.1|691152_692001_+	pneumococcal surface protein	NA	NA	NA	NA	NA
VFI23509.1|692127_693087_+	glucokinase	NA	NA	NA	NA	NA
VFI23516.1|693183_694023_+	thymidylate synthase	NA	U5J9N5	Bacillus_phage	55.4	9.5e-87
VFI23522.1|694070_694241_-	putative uncharacterized protein ORF 3	NA	NA	NA	NA	NA
VFI23528.1|694361_695246_+|tRNA	tRNA delta(2)-isopentenylpyrophosphate transferase	tRNA	NA	NA	NA	NA
VFI23534.1|695238_696477_+	GTP-binding protein HflX	NA	NA	NA	NA	NA
VFI23540.1|696469_697093_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
VFI23546.1|697107_698037_+	hydrolase	NA	NA	NA	NA	NA
VFI23552.1|698057_698813_+	dehydrogenase	NA	NA	NA	NA	NA
VFI23558.1|698866_699835_-	transcriptional regulator	NA	A0A2H4J8I9	uncultured_Caudovirales_phage	28.9	1.5e-06
VFI23564.1|699838_700108_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
VFI23570.1|700107_700488_+	rhodanese family protein	NA	NA	NA	NA	NA
VFI23576.1|700606_700804_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI23582.1|700843_701569_-	ribosomal small subunit pseudouridine synthase A	NA	NA	NA	NA	NA
VFI23588.1|701730_703572_+	GTP-binding protein TypA	NA	NA	NA	NA	NA
VFI23593.1|703591_703846_+	membrane protein	NA	NA	NA	NA	NA
VFI23599.1|704163_704511_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
VFI23605.1|704581_706603_+|bacteriocin	bacteriocin-associated integral membrane protein	bacteriocin	NA	NA	NA	NA
>prophage 8
LR216053	Streptococcus pneumoniae strain 2245STDY6106635 genome assembly, chromosome: 1	2240045	719653	760579	2240045	tRNA,bacteriocin,transposase	Bacillus_virus(28.57%)	43	NA	NA
VFI23713.1|719653_721144_+|tRNA	lysyl-tRNA synthetase	tRNA	A0A1V0SAC0	Catovirus	39.6	7.3e-90
VFI23719.1|721768_722905_+	L-lactate oxidase	NA	NA	NA	NA	NA
VFI23726.1|723459_724128_+	transcriptional regulator, TENA/THI-4 family protein	NA	NA	NA	NA	NA
VFI23732.1|724415_725198_+	hydroxyethylthiazole kinase	NA	NA	NA	NA	NA
VFI23738.1|725199_725829_+	thiamine-phosphate pyrophosphorylase	NA	NA	NA	NA	NA
VFI23744.1|726387_726948_+	cobalt ABC transporter permease	NA	NA	NA	NA	NA
VFI23750.1|726948_728334_+	cobalt or other cation ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	25.6	5.9e-09
VFI23756.1|728335_728986_+	cobalt ABC transporter domain-containing protein	NA	NA	NA	NA	NA
VFI23762.1|728996_729689_+	transcriptional activator TenA, TENA/THI-4 family protein	NA	NA	NA	NA	NA
VFI23768.1|729693_730218_+	ThiW superfamily protein	NA	NA	NA	NA	NA
VFI23774.1|730217_731021_+	hydroxyethylthiazole kinase	NA	NA	NA	NA	NA
VFI23780.1|731013_731646_+	thiamine-phosphate pyrophosphorylase	NA	NA	NA	NA	NA
VFI23786.1|731854_732661_-	phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
VFI23792.1|733026_733422_+	transcriptional repressor	NA	NA	NA	NA	NA
VFI23798.1|733432_733804_+	Cu2+-exporting ATPase	NA	NA	NA	NA	NA
VFI23804.1|733813_736057_+	cation transporter E1-E2 family ATPase	NA	A0A218MNH6	uncultured_virus	37.5	5.1e-95
VFI23811.1|736263_738039_+	putative oxidase	NA	E5EQ70	Micromonas_sp._RCC1109_virus	23.5	1.9e-28
VFI23818.1|738149_738296_+	glyoxalase family protein	NA	NA	NA	NA	NA
VFI23824.1|738613_739123_-|transposase	transposase family protein	transposase	NA	NA	NA	NA
VFI23830.1|739154_739421_-|transposase	degenerate transposase	transposase	NA	NA	NA	NA
VFI23836.1|739417_739660_-|transposase	transposase	transposase	NA	NA	NA	NA
VFI23842.1|739724_740021_+	6-phospho-beta-glucosidase AscB	NA	NA	NA	NA	NA
VFI23848.1|740141_741086_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
VFI23854.1|741106_742366_-	sodium-dependent transporter	NA	NA	NA	NA	NA
VFI23860.1|742362_742584_-	sodium-dependent transporter	NA	NA	NA	NA	NA
VFI23866.1|743026_743434_+	regulator of the multidrug efflux pump PmrA	NA	NA	NA	NA	NA
VFI23871.1|743582_744335_-|transposase	putative transposase	transposase	NA	NA	NA	NA
VFI23877.1|744327_744873_-|transposase	putative transposase	transposase	NA	NA	NA	NA
VFI23883.1|744992_746006_-	3-carboxymuconate cyclase	NA	NA	NA	NA	NA
VFI23889.1|746149_747316_+	transport protein	NA	NA	NA	NA	NA
VFI23895.1|747305_748535_+	TPR domain protein	NA	NA	NA	NA	NA
VFI23901.1|748680_749322_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
VFI23907.1|749331_749961_+	amino acid ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.3	1.2e-28
VFI23913.1|749973_750822_+	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
VFI23919.1|751099_751447_-|bacteriocin	thioredoxin, bacteriocin transport accessory protein	bacteriocin	NA	NA	NA	NA
VFI23926.1|751557_753276_-	phosphoglucomutase	NA	A0A1X9I671	Streptococcus_phage	83.4	1.5e-272
VFI23933.1|753821_754355_+|transposase	degenerate transposase	transposase	NA	NA	NA	NA
VFI23940.1|754695_754950_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI23946.1|755060_756167_+	putative sortase-sorted surface anchored protein (pseudogene)	NA	NA	NA	NA	NA
VFI23951.1|756124_756646_+	cell wall surface anchor family protein	NA	NA	NA	NA	NA
VFI23957.1|756869_757739_+	glycerol facilitator-aquaporin	NA	NA	NA	NA	NA
VFI23963.1|758648_759845_+	elongation factor Tu	NA	A0A076FFS6	Aureococcus_anophage	29.6	7.3e-32
VFI23968.1|760228_760579_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 9
LR216053	Streptococcus pneumoniae strain 2245STDY6106635 genome assembly, chromosome: 1	2240045	778806	785824	2240045		Streptococcus_phage(42.86%)	10	NA	NA
VFI24092.1|778806_779301_+	acetyltransferase, GNAT family protein	NA	M1PSC3	Streptococcus_phage	52.1	1.9e-42
VFI24098.1|779300_779831_+	O6-methylguanine-DNA methyltransferase	NA	M1PFU9	Streptococcus_phage	54.3	1.4e-46
VFI24104.1|779824_780181_+	ArsC family protein	NA	M1PLC0	Streptococcus_phage	57.3	1.2e-33
VFI24110.1|780338_781139_+	aspartate/glutamate ABC transporter permease	NA	NA	NA	NA	NA
VFI24115.1|781138_781882_+	aspartate/glutamate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	41.0	1.6e-29
VFI24121.1|781959_782184_+	membrane associated protein	NA	NA	NA	NA	NA
VFI24126.1|782249_783161_+	thioredoxin reductase	NA	G3MA85	Bacillus_virus	51.5	2.9e-89
VFI24129.1|783198_783927_-	TrmH family RNA methyltransferase group 3	NA	NA	NA	NA	NA
VFI24135.1|783971_784583_-	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.4	4.9e-16
VFI24141.1|785311_785824_+	enzyme of poly-gamma-glutamate biosynthesis	NA	A0A0N9SJ77	Staphylococcus_phage	32.9	1.4e-16
>prophage 10
LR216053	Streptococcus pneumoniae strain 2245STDY6106635 genome assembly, chromosome: 1	2240045	843483	899897	2240045	holin,protease,tRNA,transposase	Streptococcus_phage(33.33%)	52	NA	NA
VFI24524.1|843483_846102_+|tRNA	alanyl-tRNA synthetase	tRNA	A0A1V0SK38	Klosneuvirus	33.8	3.7e-60
VFI24530.1|846191_847646_-	alpha-amylase	NA	NA	NA	NA	NA
VFI24536.1|847824_848574_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.1	5.2e-28
VFI24542.1|848554_850189_+	ABC transporter membrane protein	NA	NA	NA	NA	NA
VFI24548.1|850875_852039_+	putative SAM-dependent methyltransferase	NA	W6LLI2	Streptococcus_phage	64.3	2.3e-139
VFI24553.1|852035_852713_+	3-dehydroquinate dehydratase, (3-dehydroquinase) (type I DHQase)	NA	W6LP76	Streptococcus_phage	67.3	3.9e-83
VFI24559.1|852702_853557_+	shikimate 5-dehydrogenase	NA	NA	NA	NA	NA
VFI24568.1|853575_854643_+	3-dehydroquinate synthase	NA	NA	NA	NA	NA
VFI24574.1|854652_855819_+	chorismate synthase, (5-enolpyruvylshikimate-3-phosphate phospholyase)	NA	A0A291AU41	Pandoravirus	35.2	2.7e-39
VFI24580.1|855828_856932_+	prephenate dehydrogenase	NA	NA	NA	NA	NA
VFI24586.1|856942_857281_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	A0A1X9I5Y8	Streptococcus_phage	50.9	1.2e-24
VFI24592.1|857372_858656_+	5-enolpyruvylshikimate-3-phosphate synthase	NA	NA	NA	NA	NA
VFI24598.1|858648_859125_+	prephenate dehydratase	NA	NA	NA	NA	NA
VFI24604.1|859121_859970_+	prephenate dehydratase	NA	NA	NA	NA	NA
VFI24610.1|859966_861241_+	LytR family transcriptional regulator	NA	NA	NA	NA	NA
VFI24616.1|861528_862365_+|holin	phosphorylcholine transferase LicD3	holin	NA	NA	NA	NA
VFI24622.1|862354_863458_+	glycosyl transferase	NA	NA	NA	NA	NA
VFI24628.1|863459_864446_+	glycosyl transferase	NA	NA	NA	NA	NA
VFI24634.1|864461_865895_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI24640.1|865923_866958_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI24646.1|867158_867896_+	adaptor protein	NA	NA	NA	NA	NA
VFI24652.1|868046_869333_+	homoserine dehydrogenase	NA	NA	NA	NA	NA
VFI24658.1|869334_870204_+	N-ethylammeline chlorohydrolase	NA	NA	NA	NA	NA
VFI24664.1|870498_871437_+	bifunctional methionine sulfoxide reductase	NA	NA	NA	NA	NA
VFI24670.1|871494_873219_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	2.7e-43
VFI24676.1|873220_874972_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	29.9	1.6e-48
VFI24683.1|875066_876623_+	chlorohydrolase	NA	NA	NA	NA	NA
VFI24689.1|876872_877373_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
VFI24692.1|877448_877817_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
VFI24698.1|878003_878591_+|protease	Tn5253 CAAX amino terminal protease family	protease	NA	NA	NA	NA
VFI24704.1|878990_879800_+	transcriptional regulator	NA	NA	NA	NA	NA
VFI24711.1|879804_880506_+	N-acetylmannosamine-6-phosphate epimerase	NA	NA	NA	NA	NA
VFI24717.1|880530_881448_+	N-acetylneuraminate lyase	NA	NA	NA	NA	NA
VFI24723.1|883035_883494_+	beta-galactosidase subunit beta	NA	NA	NA	NA	NA
VFI24729.1|883495_885718_+	sialidase B	NA	NA	NA	NA	NA
VFI24735.1|885757_886867_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
VFI24741.1|887023_887914_+	transcriptional regulator	NA	NA	NA	NA	NA
VFI24747.1|887938_888262_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI24753.1|888251_890243_+	V-type H+-ATPase, subunit I	NA	NA	NA	NA	NA
VFI24759.1|890258_890735_+	V-type H+-ATPase, subunit K	NA	NA	NA	NA	NA
VFI24765.1|890768_891350_+	V-type H+-ATPase, subunit E	NA	NA	NA	NA	NA
VFI24771.1|891414_892422_+	V-type H+-ATPase, subunit C	NA	NA	NA	NA	NA
VFI24778.1|892411_892732_+	V-type H+-ATPase, subunit F	NA	NA	NA	NA	NA
VFI24784.1|892794_894570_+	V-type ATP synthase subunit A	NA	NA	NA	NA	NA
VFI24790.1|894570_895956_+	V-type H+-ATPase, subunit B	NA	NA	NA	NA	NA
VFI24793.1|895978_896590_+	ATP synthase, subunit D	NA	NA	NA	NA	NA
VFI24799.1|896631_897048_+	IS66 family Orf1	NA	NA	NA	NA	NA
VFI24805.1|897028_897352_+|transposase	IS66-Spn1 transposase	transposase	NA	NA	NA	NA
VFI24811.1|897805_898246_+|transposase	transposase	transposase	A0A218MNE7	uncultured_virus	24.6	1.9e-06
VFI24817.1|898840_898999_+|transposase	transposase	transposase	NA	NA	NA	NA
VFI24823.1|899091_899415_+	mobile genetic element	NA	NA	NA	NA	NA
VFI24829.1|899507_899897_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 11
LR216053	Streptococcus pneumoniae strain 2245STDY6106635 genome assembly, chromosome: 1	2240045	903212	1000074	2240045	holin,protease,tRNA,bacteriocin,transposase	Streptococcus_phage(16.67%)	107	NA	NA
VFI24848.1|903212_903479_+|transposase	transposase	transposase	NA	NA	NA	NA
VFI24854.1|903530_904535_+	peroxidase	NA	NA	NA	NA	NA
VFI24860.1|904509_905088_+	high-affinity Fe2+/Pb2+ permease	NA	NA	NA	NA	NA
VFI24866.1|905144_905387_-	50S ribosomal protein L31	NA	NA	NA	NA	NA
VFI24872.1|905482_906418_-	DHH subfamily 1 protein	NA	NA	NA	NA	NA
VFI24878.1|906521_906965_+	flavodoxin	NA	NA	NA	NA	NA
VFI24884.1|907080_907347_+	chorismate mutase/prephenate dehydratase	NA	NA	NA	NA	NA
VFI24890.1|907343_907718_+	CrcB protein	NA	NA	NA	NA	NA
VFI24896.1|907711_908041_+	CrcB protein	NA	A0A2H4PQR0	Staphylococcus_phage	37.0	1.4e-09
VFI24902.1|908159_908507_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
VFI24908.1|908675_909482_-	hydrolase	NA	NA	NA	NA	NA
VFI24914.1|909494_910799_-	dGTP triphosphohydrolase	NA	E3T4P8	Cafeteria_roenbergensis_virus	29.8	5.0e-26
VFI24920.1|910870_911248_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
VFI24926.1|911337_911670_+	transcriptional regulator	NA	NA	NA	NA	NA
VFI24932.1|911681_913253_+	signal recognition particle protein	NA	NA	NA	NA	NA
VFI24939.1|913447_914731_-	uracil permease	NA	Q9KX94	Enterobacteria_phage	35.3	5.2e-60
VFI24944.1|915033_915747_-	16S rRNA methyltransferase GidB	NA	NA	NA	NA	NA
VFI24950.1|915840_916401_+	Cytoplasmic membrane protein LemA	NA	NA	NA	NA	NA
VFI24956.1|916402_917302_+	heat shock protein HtpX	NA	NA	NA	NA	NA
VFI24962.1|917345_918905_-	ABC transporter ATP-binding protein	NA	A0A1B0RXA0	Streptococcus_phage	27.0	2.1e-10
VFI24968.1|919143_919461_-	BlpT protein, fusion	NA	NA	NA	NA	NA
VFI24974.1|919630_920173_+	putative metal-binding, possibly nucleic acid-binding protein	NA	NA	NA	NA	NA
VFI24980.1|920172_920802_+	endonuclease III (DNA repair), DNA-(apurinic or apyrimidinic site) lyase	NA	NA	NA	NA	NA
VFI24986.1|921012_921534_+	transcriptional attenuation of the pyrimidine operon/uracil phosphoribosyltransferase (bifunctional protein)	NA	NA	NA	NA	NA
VFI24992.1|921552_922476_+	aspartate carbamoyltransferase	NA	M1HGA5	Paramecium_bursaria_Chlorella_virus	31.7	3.0e-25
VFI24998.1|922525_923605_+	carbamoyl-phosphate synthase, small subunit	NA	R4TGJ8	Halovirus	35.9	6.3e-59
VFI25004.1|923917_927094_+	carbamoyl-phosphate synthase, large subunit	NA	NA	NA	NA	NA
VFI25010.1|927368_928178_-	licD2 protein	NA	A0A1V0SD50	Indivirus	30.3	2.6e-09
VFI25017.1|928179_928983_-|holin	phosphorylcholine transferase LicD1	holin	A0A1V0SD50	Indivirus	27.1	5.3e-10
VFI25023.1|928992_930480_-	teichoic acid subunit flippase	NA	NA	NA	NA	NA
VFI25029.1|930834_931542_+	cytidylyltransferase	NA	NA	NA	NA	NA
VFI25035.1|931546_932569_+	zinc-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
VFI25042.1|932585_933455_+|holin	choline kinase	holin	NA	NA	NA	NA
VFI25048.1|933444_934323_+	drug/metabolite transporter (DMT) superfamily permease	NA	NA	NA	NA	NA
VFI25054.1|934334_935024_+|holin	CTP:phosphocholine cytidylyltransferase	holin	A0A127AW70	Bacillus_phage	45.0	3.4e-05
VFI25060.1|935119_935968_+	DNA processing protein DprA	NA	S6BFL3	Thermus_phage	39.5	4.2e-34
VFI25066.1|936151_936499_-	3-ketoacyl-ACP reductase	NA	NA	NA	NA	NA
VFI25072.1|937076_937457_+	membrane protein	NA	NA	NA	NA	NA
VFI25078.1|937432_938119_+	membrane protein	NA	NA	NA	NA	NA
VFI25081.1|938285_940373_+	DNA topoisomerase I	NA	A0A1V0SCS0	Indivirus	37.6	3.9e-105
VFI25087.1|940593_940953_+	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
VFI25093.1|941045_941678_+	copper homeostasis protein	NA	NA	NA	NA	NA
VFI25099.1|941721_942378_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VFI25105.1|942396_943029_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
VFI25111.1|943071_943491_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
VFI25117.1|943502_944540_+	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
VFI25123.1|944536_944806_+	membrane protein	NA	NA	NA	NA	NA
VFI25129.1|944809_945169_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
VFI25135.1|945536_945803_+	translation factor	NA	NA	NA	NA	NA
VFI25141.1|945783_945900_+	translation factor	NA	NA	NA	NA	NA
VFI25147.1|946222_948154_+	endonuclease	NA	K4I1H4	Acidithiobacillus_phage	33.7	1.8e-16
VFI25153.1|948113_949457_+	McrBC 5-methylcytosine restriction system component	NA	NA	NA	NA	NA
VFI25159.1|949631_950618_+	GMP reductase	NA	G3MBI2	Bacillus_virus	72.2	1.8e-137
VFI25165.1|950935_951634_+	ribonuclease III	NA	J2YAN1	Acanthamoeba_polyphaga_lentillevirus	33.8	3.9e-25
VFI25171.1|951624_955164_+	chromosome condensation and segregation SMC protein	NA	NA	NA	NA	NA
VFI25177.1|955160_955955_+	Cof family protein	NA	NA	NA	NA	NA
VFI25183.1|955954_956773_+	Cof family protein	NA	NA	NA	NA	NA
VFI25185.1|956776_958066_+	cell division protein FtsY	NA	NA	NA	NA	NA
VFI25191.1|958118_958469_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	96.6	7.3e-57
VFI25197.1|958484_958646_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	96.2	2.9e-21
VFI25203.1|958642_958930_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	71.8	8.7e-24
VFI25209.1|958926_959445_-|transposase	degenerate transposase	transposase	A0A1S5SBP9	Streptococcus_phage	94.9	6.3e-81
VFI25215.1|959603_961091_-	glucose-6-phosphate 1-dehydrogenase	NA	H6WFS4	Cyanophage	32.8	8.4e-70
VFI25221.1|961239_961980_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.1	2.0e-32
VFI25227.1|961979_964145_-	glutamine ABC transporter permease	NA	NA	NA	NA	NA
VFI25233.1|964314_965268_+|protease	caax amino protease family protein	protease	NA	NA	NA	NA
VFI25239.1|965344_966901_+	excinuclease ABC subunit B	NA	NA	NA	NA	NA
VFI25245.1|966897_967332_+	helicase subunit of the DNA excision repair complex	NA	NA	NA	NA	NA
VFI25252.1|967341_967905_+	acetyltransferase	NA	NA	NA	NA	NA
VFI25258.1|967870_968359_+	acetyltransferase, gnat family	NA	NA	NA	NA	NA
VFI25264.1|968432_968900_+	MutT/nudix family protein	NA	NA	NA	NA	NA
VFI25267.1|968896_969412_-	transcriptional regulator	NA	NA	NA	NA	NA
VFI25274.1|969423_969951_-	membrane protein	NA	NA	NA	NA	NA
VFI25280.1|970232_970796_-	membrane protein	NA	NA	NA	NA	NA
VFI25286.1|970779_971331_-	flavoprotein involved in panthothenate metabolism	NA	A0A068EHP1	Penguinpox_virus	37.6	3.1e-25
VFI25292.1|971342_972032_-	phosphopantothenate--cysteine ligase	NA	NA	NA	NA	NA
VFI25299.1|972261_973932_+	formate-tetrahydrofolate ligase	NA	NA	NA	NA	NA
VFI25305.1|974259_975435_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
VFI25310.1|975489_976194_+	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	39.8	2.8e-39
VFI25316.1|976186_977536_+	histidine kinase	NA	W8CYF6	Bacillus_phage	34.6	1.8e-34
VFI25322.1|977537_978347_+	metallo-beta-lactamase superfamily protein	NA	A0A0C5AFC1	Paenibacillus_phage	39.0	1.8e-34
VFI25328.1|978437_978680_+	toxin-antitoxin system, antitoxin component, ribbon-helix-helix fold protein	NA	NA	NA	NA	NA
VFI25334.1|978672_978936_+	cytotoxic translational repressor of toxin-antitoxin stability system	NA	NA	NA	NA	NA
VFI25340.1|978982_979756_+	ion transporter	NA	A0A1B0Y2S3	Lactobacillus_phage	48.2	1.0e-26
VFI25346.1|980015_981002_-	L-lactate dehydrogenase 1	NA	NA	NA	NA	NA
VFI25352.1|981195_983664_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	35.5	3.5e-105
VFI25358.1|983663_984407_+	sortase SrtA	NA	NA	NA	NA	NA
VFI25364.1|984650_985448_+	formate/nitrate transporter	NA	NA	NA	NA	NA
VFI25370.1|985595_985718_+	O-acetylhomoserine sulfhydrylase	NA	NA	NA	NA	NA
VFI25376.1|985739_986855_+	O-acetylhomoserine sulfhydrylase	NA	NA	NA	NA	NA
VFI25382.1|986950_988225_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VFI25388.1|988234_989113_+|tRNA	tRNA pseudouridine synthase B	tRNA	NA	NA	NA	NA
VFI25395.1|989261_989357_+|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
VFI25401.1|989353_989656_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
VFI25407.1|989763_990402_+	uridine kinase	NA	A0A1V0SAA3	Catovirus	39.9	8.4e-35
VFI25413.1|990528_991869_+	exodeoxyribonuclease VII large subunit	NA	A0A1B3AYB4	Gordonia_phage	33.6	6.7e-34
VFI25419.1|991846_992059_+	exodeoxyribonuclease VII, small subunit	NA	NA	NA	NA	NA
VFI25425.1|992055_992931_+	farnesyl diphosphate synthase	NA	NA	NA	NA	NA
VFI25431.1|992923_993739_+	rRNA methylase	NA	NA	NA	NA	NA
VFI25437.1|993731_994163_+	transcriptional repressor protein	NA	NA	NA	NA	NA
VFI25443.1|994169_995837_+	DNA repair protein RecN	NA	NA	NA	NA	NA
VFI25449.1|995838_996567_+	serine/threonine protein phosphatase	NA	A0A1V0EC57	Caulobacter_phage	33.0	1.4e-14
VFI25455.1|996645_998469_+	GTP-binding protein LepA	NA	A0A2K9L2P9	Tupanvirus	40.9	8.3e-19
VFI25461.1|998549_998882_-	chlorohydrolase	NA	NA	NA	NA	NA
VFI25467.1|999061_999538_+	PTS system transporter subunit IIA	NA	NA	NA	NA	NA
VFI25473.1|999575_999878_+	PTS system galactose-specific transporter subunit IIB	NA	NA	NA	NA	NA
VFI25479.1|999885_1000074_+|transposase	transposase-like protein, IS1381 ISSpn7	transposase	NA	NA	NA	NA
>prophage 12
LR216053	Streptococcus pneumoniae strain 2245STDY6106635 genome assembly, chromosome: 1	2240045	1070507	1178827	2240045	protease,bacteriocin,transposase	Streptococcus_phage(71.79%)	98	NA	NA
VFI25908.1|1070507_1071725_-	Mobile element protein	NA	A0A1S5SEW7	Streptococcus_phage	99.8	2.4e-232
VFI25914.1|1071806_1072010_-	Mobile element protein	NA	A0A1S5SF07	Streptococcus_phage	100.0	4.0e-31
VFI25920.1|1072470_1072701_-	Helix-turn-helix domain	NA	A0A1S5SEX1	Streptococcus_phage	100.0	2.7e-36
VFI25926.1|1072697_1073120_-	RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
VFI25932.1|1073624_1073978_+	anaerobic benzoate catabolism transcriptional regulator	NA	A0A1S5SFA6	Streptococcus_phage	100.0	1.3e-58
VFI25939.1|1074323_1076243_-	tetracycline resistance protein TetM	NA	A0A1S5SF82	Streptococcus_phage	96.9	0.0e+00
VFI25944.1|1076619_1077537_-	putative conjugative transposon protein	NA	A0A1S5SF22	Streptococcus_phage	99.0	1.0e-166
VFI25950.1|1077551_1078553_-	lipoprotein, NLP/P60 family	NA	A0A1S5SEZ8	Streptococcus_phage	100.0	5.0e-191
VFI25956.1|1078549_1080661_-	Tn916 ORF15 signal peptide containing protein	NA	A0A1S5SF30	Streptococcus_phage	100.0	0.0e+00
VFI25962.1|1080729_1083177_-	Type IV secretory pathway, VirB4 components	NA	A0A1S5SF64	Streptococcus_phage	100.0	0.0e+00
VFI25968.1|1083160_1083667_-	TcpE family	NA	A0A1S5SEX7	Streptococcus_phage	100.0	8.6e-91
VFI25974.1|1083641_1084139_-	Antirestriction protein	NA	A0A1S5SF25	Streptococcus_phage	100.0	1.7e-91
VFI25980.1|1084255_1084477_-	FIG086557: Conjugation related protein	NA	A0A1S5SEY0	Streptococcus_phage	100.0	4.3e-31
VFI25986.1|1084656_1085904_+|transposase	transposase	transposase	Q6V7R1	Burkholderia_virus	23.9	3.9e-12
VFI25992.1|1086024_1086156_-	Uncharacterised protein	NA	E4ZFP9	Streptococcus_phage	100.0	7.9e-17
VFI25998.1|1086160_1086898_-	erythromycin ribosome methylase	NA	E4ZFQ0	Streptococcus_phage	99.2	3.1e-134
VFI26004.1|1087154_1088573_-	transcriptional regulator protein	NA	A0A1S5SEX3	Streptococcus_phage	100.0	1.5e-233
VFI26010.1|1088750_1090136_-	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	100.0	1.1e-265
VFI26016.1|1090164_1090548_-	Bacterial protein of uncharacterised function (DUF961)	NA	A0A1S5SF96	Streptococcus_phage	100.0	2.3e-64
VFI26022.1|1090566_1090881_-	Bacterial protein of uncharacterised function (DUF961)	NA	A0A1S5SF38	Streptococcus_phage	100.0	5.2e-54
VFI26028.1|1091196_1091703_-|protease	Zn-dependent protease of MPP family	protease	NA	NA	NA	NA
VFI26035.1|1091695_1092817_-	ThiF family protein	NA	NA	NA	NA	NA
VFI26041.1|1092975_1093065_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI26044.1|1093078_1094662_-	ABC transporter ATP-binding protein/permease	NA	G3M9Y6	Bacillus_virus	28.9	3.6e-10
VFI26050.1|1095053_1095350_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI26056.1|1095363_1095648_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI26062.1|1095722_1101947_-	SNF2 family protein	NA	A0A248SL14	Klebsiella_phage	30.4	1.7e-217
VFI26068.1|1101994_1102405_-	OmpA domain-containing protein	NA	NA	NA	NA	NA
VFI26071.1|1102867_1103032_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI26078.1|1103033_1103642_+	phage protein	NA	NA	NA	NA	NA
VFI26084.1|1103676_1106490_-	CHAP domain containing protein	NA	Q4Z9D9	Staphylococcus_phage	40.4	2.1e-08
VFI26089.1|1106501_1108859_-	Type IV secretion system protein	NA	NA	NA	NA	NA
VFI26095.1|1108809_1109169_-	PrgI family protein	NA	NA	NA	NA	NA
VFI26101.1|1109222_1110077_-	membrane protein	NA	NA	NA	NA	NA
VFI26107.1|1110093_1110336_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI26113.1|1110356_1112237_-	TraG/TraD family protein	NA	NA	NA	NA	NA
VFI26119.1|1112233_1112722_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI26126.1|1112711_1113011_-|bacteriocin	Tn5253 bacteriocine putative	bacteriocin	NA	NA	NA	NA
VFI26133.1|1113292_1114129_-	abortive infection protein AbiGII	NA	NA	NA	NA	NA
VFI26139.1|1114128_1114719_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI26145.1|1115143_1115779_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI26152.1|1116070_1116658_-|protease	Tn5253 CAAX amino terminal protease family	protease	NA	NA	NA	NA
VFI26158.1|1116660_1116894_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI26165.1|1116906_1117287_-	arsenate reductase-like glutaredoxin family protein	NA	NA	NA	NA	NA
VFI26171.1|1117279_1117729_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI26177.1|1117712_1119071_-	putative DNA methylase	NA	A0A141E1L1	Streptococcus_phage	57.2	3.2e-132
VFI26183.1|1119067_1119169_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI26190.1|1119169_1119949_-	replication initiator protein A	NA	A0A286QNA4	Streptococcus_phage	34.4	1.8e-10
VFI26196.1|1119945_1120119_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI26202.1|1120797_1126689_-|protease	immunoglobulin A1 protease	protease	NA	NA	NA	NA
VFI26208.1|1126897_1128076_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI26215.1|1128252_1131903_-	ATP-dependent exoDNAse subunit beta	NA	G3MA40	Bacillus_virus	25.3	8.8e-20
VFI26223.1|1131899_1135175_-	exonuclease RexB	NA	NA	NA	NA	NA
VFI26229.1|1135700_1136030_+|transposase	IS630-Spn1, transposase Orf1	transposase	NA	NA	NA	NA
VFI26234.1|1136208_1136547_+|transposase	putative IS630-Spn1 transposase	transposase	NA	NA	NA	NA
VFI26241.1|1137030_1138335_-	Enolase	NA	W6LP63	Streptococcus_phage	94.5	4.7e-234
VFI26247.1|1138498_1138945_+	Uncharacterized conserved protein	NA	NA	NA	NA	NA
VFI26253.1|1138941_1139481_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	53.1	3.4e-45
VFI26259.1|1139521_1140058_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	55.7	3.5e-18
VFI26265.1|1140066_1140396_-	phosphoserine phosphatase	NA	NA	NA	NA	NA
VFI26271.1|1140340_1140712_-	phosphoserine phosphatase	NA	NA	NA	NA	NA
VFI26277.1|1140770_1142204_-	glycogen synthase	NA	NA	NA	NA	NA
VFI26283.1|1142200_1143340_-	glycogen biosynthesis protein	NA	NA	NA	NA	NA
VFI26289.1|1143329_1144472_-	glucose-1-phosphate adenylyltransferase	NA	NA	NA	NA	NA
VFI26295.1|1144461_1146390_-	1,4-alpha-glucan branching enzyme	NA	NA	NA	NA	NA
VFI26302.1|1146872_1148297_-	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
VFI26308.1|1148868_1151148_-	pullulanase	NA	NA	NA	NA	NA
VFI26314.1|1151259_1153218_-	DNA ligase	NA	A0A1W6DX16	Sphingobium_phage	35.9	1.2e-100
VFI26320.1|1153310_1154489_-	macrolide efflux ABC transporter membrane-spanning permease	NA	NA	NA	NA	NA
VFI26326.1|1154568_1155432_-	transcriptional regulator MutR	NA	NA	NA	NA	NA
VFI26332.1|1155434_1157336_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.5	1.5e-50
VFI26338.1|1157762_1158038_-	DNA-binding protein HU 1	NA	A7KV42	Bacillus_phage	66.3	9.2e-23
VFI26344.1|1158144_1158984_-	DegV family protein	NA	NA	NA	NA	NA
VFI26350.1|1159125_1159974_+	YpjC	NA	M1Q1P6	Streptococcus_phage	46.5	1.4e-64
VFI26353.1|1160066_1160984_-	bifunctional riboflavin kinase/FMN adenylyltransferase	NA	NA	NA	NA	NA
VFI26359.1|1161937_1162231_-	LSU ribosomal protein L27p	NA	NA	NA	NA	NA
VFI26365.1|1162247_1162592_-	ribosomal protein	NA	NA	NA	NA	NA
VFI26371.1|1162607_1162922_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
VFI26377.1|1163103_1163796_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
VFI26383.1|1164209_1164509_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
VFI26388.1|1164690_1165209_+|transposase	degenerate transposase	transposase	A0A1S5SBP9	Streptococcus_phage	91.1	1.7e-78
VFI26394.1|1165205_1165493_+|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	70.6	3.3e-23
VFI26400.1|1165489_1165993_+|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	90.3	1.6e-81
VFI26406.1|1166253_1167228_-	phosphotransacetylase	NA	NA	NA	NA	NA
VFI26412.1|1167271_1168168_-	23S_rRNA pseudouridine synthase	NA	NA	NA	NA	NA
VFI26418.1|1168164_1168983_-	putative sugar kinase	NA	NA	NA	NA	NA
VFI26424.1|1168966_1169638_-	GTP pyrophosphokinase	NA	NA	NA	NA	NA
VFI26430.1|1169765_1170335_+	adenylate cyclase	NA	NA	NA	NA	NA
VFI26436.1|1170447_1171398_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L2G2	Tupanvirus	33.4	3.5e-37
VFI26442.1|1171417_1172533_+	aminotransferase class-V	NA	H7BUW1	unidentified_phage	36.8	1.0e-27
VFI26449.1|1172537_1172885_+	cytosolic protein	NA	NA	NA	NA	NA
VFI26456.1|1172892_1173108_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI26462.1|1173190_1173832_+	DNA-binding protein	NA	NA	NA	NA	NA
VFI26469.1|1173849_1174539_+	glutamine amidotransferase, class I	NA	NA	NA	NA	NA
VFI26476.1|1174535_1175216_-	DNA repair protein RadC	NA	NA	NA	NA	NA
VFI26482.1|1175258_1177550_-	ATP-dependent DNA helicase PcrA	NA	A7KV33	Bacillus_phage	41.1	5.5e-129
VFI26488.1|1177740_1178130_-|transposase	transposase	transposase	NA	NA	NA	NA
VFI26494.1|1178155_1178827_-|transposase	degenerate transposase (orf1)	transposase	NA	NA	NA	NA
>prophage 13
LR216053	Streptococcus pneumoniae strain 2245STDY6106635 genome assembly, chromosome: 1	2240045	1248131	1346383	2240045	holin,protease,tRNA,transposase,integrase	Streptococcus_phage(31.03%)	99	1344872:1344931	1347277:1347346
VFI26900.1|1248131_1248461_-|transposase	IS630-Spn1, transposase Orf1	transposase	NA	NA	NA	NA
VFI26906.1|1248674_1250438_-	glycerophosphoryl diester phosphodiesterase family protein	NA	A0A0S2MYI4	Enterococcus_phage	22.2	3.0e-05
VFI26912.1|1250446_1251037_-	DNA polymerase III subunit epsilon	NA	NA	NA	NA	NA
VFI26917.1|1251134_1251626_-	DNA-binding protein	NA	NA	NA	NA	NA
VFI26922.1|1251702_1252395_-	5'-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosidase	NA	NA	NA	NA	NA
VFI26927.1|1252411_1252726_-	membrane protein	NA	NA	NA	NA	NA
VFI26932.1|1252737_1253283_-	MutT/NUDIX hydrolase family protein	NA	NA	NA	NA	NA
VFI26937.1|1253292_1254672_-	bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase	NA	A0A2K9L277	Tupanvirus	35.5	1.3e-32
VFI26942.1|1254815_1255604_+	lysozyme	NA	NA	NA	NA	NA
VFI26947.1|1255698_1256541_+	integral membrane protein	NA	NA	NA	NA	NA
VFI26952.1|1256540_1257023_+	regulatory protein	NA	NA	NA	NA	NA
VFI26957.1|1257022_1257643_+	phosphoglycerate mutase	NA	NA	NA	NA	NA
VFI26963.1|1258271_1258406_+|transposase	degenerate transposase (orf1)	transposase	NA	NA	NA	NA
VFI26968.1|1258405_1258747_+|integrase	integrase core subunit	integrase	A0A2I6AZV9	Macacine_betaherpesvirus	50.4	4.6e-24
VFI26973.1|1258865_1259807_-	peptidyl-prolyl isomerase	NA	NA	NA	NA	NA
VFI26978.1|1259873_1260587_-	O-methyltransferase	NA	NA	NA	NA	NA
VFI26983.1|1260588_1262391_-	oligoendopeptidase F	NA	NA	NA	NA	NA
VFI26989.1|1262409_1263363_-	competence protein	NA	NA	NA	NA	NA
VFI26994.1|1263435_1264296_-	tellurite resistance protein TehB	NA	NA	NA	NA	NA
VFI26999.1|1264311_1264779_-	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	60.1	4.2e-44
VFI27004.1|1264741_1267096_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	40.5	1.2e-89
VFI27010.1|1267197_1267431_-	membrane protein involved in protein export SecG	NA	NA	NA	NA	NA
VFI27015.1|1267619_1268819_-	multidrug resistance protein MdtG	NA	NA	NA	NA	NA
VFI27020.1|1268805_1269411_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
VFI27025.1|1269410_1270235_-	formamidopyrimidine-DNA glycosylase	NA	G3MA33	Bacillus_virus	34.9	5.6e-31
VFI27030.1|1270283_1271183_-	GTP-binding protein Era	NA	NA	NA	NA	NA
VFI27035.1|1271199_1271595_-	diacylglycerol kinase	NA	NA	NA	NA	NA
VFI27040.1|1271575_1272073_-|protease	putative metalloprotease	protease	NA	NA	NA	NA
VFI27045.1|1272177_1273833_+	fibronectin/fibrinogen binding protein	NA	A0A1J0F9J4	Only_Syngen_Nebraska_virus	36.5	4.7e-05
VFI27050.1|1273893_1276002_-	mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA	A0A143FPM9	Bacillus_phage	42.6	9.0e-25
VFI27056.1|1276100_1277039_-	dihydroorotate dehydrogenase 1B	NA	NA	NA	NA	NA
VFI27061.1|1277049_1277850_-	dihydroorotate dehydrogenase electron transfer subunit	NA	NA	NA	NA	NA
VFI27066.1|1278099_1278480_-	lactoylglutathione lyase	NA	NA	NA	NA	NA
VFI27071.1|1278537_1278897_-	LSU ribosomal protein L20p	NA	NA	NA	NA	NA
VFI27076.1|1278948_1279149_-	LSU ribosomal protein L35p	NA	NA	NA	NA	NA
VFI27081.1|1280032_1281208_-	ABC-type transport system involved in multi-copper enzyme maturation, permease component	NA	NA	NA	NA	NA
VFI27086.1|1281211_1281799_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.1	1.2e-14
VFI27091.1|1282197_1284438_-	competence protein CelB	NA	M1PSD2	Streptococcus_phage	52.7	1.5e-46
VFI27094.1|1284421_1285072_-	competence protein	NA	NA	NA	NA	NA
VFI27099.1|1285139_1285709_-	acetyltransferase	NA	NA	NA	NA	NA
VFI27104.1|1285885_1286311_+	alanine dehydrogenase	NA	NA	NA	NA	NA
VFI27109.1|1286721_1286997_+	alanine dehydrogenase	NA	NA	NA	NA	NA
VFI27114.1|1287479_1287623_-	TfoX N- domain family protein	NA	NA	NA	NA	NA
VFI27120.1|1287625_1288126_-	acetyltransferase	NA	NA	NA	NA	NA
VFI27125.1|1288318_1289287_-	PhoH family protein	NA	W8D063	Erwinia_phage	47.9	5.9e-48
VFI27130.1|1289372_1289588_-	serine-type D-Ala-D-Ala carboxypeptidase	NA	NA	NA	NA	NA
VFI27135.1|1289596_1290451_-	s1 RNA binding domain protein	NA	NA	NA	NA	NA
VFI27140.1|1290510_1291068_-	ribosome-recycling factor	NA	NA	NA	NA	NA
VFI27145.1|1291076_1291814_-	uridylate kinase	NA	NA	NA	NA	NA
VFI27150.1|1291897_1293232_-|tRNA	tRNA (uracil-5-)-methyltransferase Gid	tRNA	NA	NA	NA	NA
VFI27154.1|1293725_1294115_+|transposase	transposase-like protein, IS1381 ISSpn7	transposase	NA	NA	NA	NA
VFI27159.1|1294140_1294530_+|transposase	transposase	transposase	NA	NA	NA	NA
VFI27164.1|1294518_1295166_-	phage protein	NA	A0A2P0VK56	Streptococcus_phage	33.7	7.0e-13
VFI27169.1|1295274_1295793_-	DUF1706 domain-containing protein	NA	NA	NA	NA	NA
VFI27174.1|1296019_1296889_-	tetrapyrrole methylase	NA	M1PLC5	Streptococcus_phage	76.1	3.5e-116
VFI27179.1|1296891_1297209_-	DNA replication intiation control protein YabA	NA	M1PFV3	Streptococcus_phage	60.0	2.9e-28
VFI27184.1|1297248_1298139_-	DNA polymerase III, delta' subunit	NA	M1NSC1	Streptococcus_phage	51.4	6.4e-73
VFI27189.1|1298135_1298774_-	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	68.1	9.8e-76
VFI27194.1|1298993_1299791_-	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	50.2	8.0e-59
VFI27199.1|1299794_1301057_-	gamma-glutamyl phosphate reductase	NA	A0A1X9I5D4	Streptococcus_phage	64.0	7.2e-139
VFI27204.1|1301066_1302176_-	gamma-glutamyl kinase	NA	A0A1X9I5D0	Streptococcus_phage	58.7	3.8e-115
VFI27209.1|1302276_1304160_-|holin	choline binding protein E CbpE	holin	Q332B9	Clostridium_botulinum_C_phage	22.9	1.2e-09
VFI27214.1|1304162_1305050_-	23S rluA family pseudouridine synthase	NA	A0A2H4UV25	Bodo_saltans_virus	28.0	1.0e-09
VFI27219.1|1305039_1305501_-	lipoprotein signal peptidase, signal peptidase type II	NA	NA	NA	NA	NA
VFI27224.1|1305497_1306406_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	27.7	5.2e-06
VFI27229.1|1306638_1307310_-|protease	caax amino protease family protein	protease	NA	NA	NA	NA
VFI27234.1|1307363_1307585_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI27239.1|1307856_1308666_+	Cof family protein	NA	NA	NA	NA	NA
VFI27244.1|1308846_1309722_-	carbon-nitrogen hydrolase family protein	NA	M1H5W0	Paramecium_bursaria_Chlorella_virus	50.0	1.1e-77
VFI27249.1|1309731_1310817_-	agmatine deiminase	NA	M1HES8	Acanthocystis_turfacea_Chlorella_virus	47.5	2.0e-89
VFI27255.1|1310813_1311941_-	LysA-like decarboxylase, diaminopimelate decarboxylase putative	NA	NA	NA	NA	NA
VFI27260.1|1311940_1313200_-	dehydrogenase family protein, saccharopine dehydrogenase	NA	NA	NA	NA	NA
VFI27265.1|1313196_1314057_-	spermidine synthase	NA	NA	NA	NA	NA
VFI27270.1|1314312_1314840_+|transposase	degenerate transposase	transposase	NA	NA	NA	NA
VFI27275.1|1314993_1316469_-	ornithine decarboxylase family protein	NA	NA	NA	NA	NA
VFI27280.1|1317175_1318171_+|transposase	IS1239 transposase	transposase	H7BVY4	unidentified_phage	35.1	5.9e-35
VFI27285.1|1318250_1318841_+	integral membrane protein	NA	NA	NA	NA	NA
VFI27291.1|1318882_1320871_-	ABC transporter, membrane-spanning protein	NA	NA	NA	NA	NA
VFI27296.1|1320872_1321631_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.3	7.7e-27
VFI27299.1|1321645_1321756_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI27304.1|1322058_1322250_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFI27309.1|1322603_1322876_-	PspC domain-containing protein	NA	NA	NA	NA	NA
VFI27311.1|1322933_1323383_-	SprT family protein	NA	NA	NA	NA	NA
VFI27317.1|1323369_1325499_-	S1 RNA-binding domain-containing protein	NA	NA	NA	NA	NA
VFI27322.1|1325778_1325910_+	putative type II restriction endonuclease DpnI	NA	NA	NA	NA	NA
VFI27327.1|1325910_1326816_+	membrnae protein	NA	NA	NA	NA	NA
VFI27332.1|1326812_1327628_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
VFI27337.1|1327757_1328474_-	alpha/beta hydrolase related protein	NA	NA	NA	NA	NA
VFI27341.1|1328477_1328789_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI27345.1|1328931_1329120_+|transposase	transposase-like protein, IS1381 ISSpn7	transposase	NA	NA	NA	NA
VFI27349.1|1329421_1330294_-	lipoprotein, putative	NA	NA	NA	NA	NA
VFI27353.1|1332065_1333571_-	pyruvate kinase	NA	NA	NA	NA	NA
VFI27357.1|1333629_1334637_-	6-phosphofructokinase	NA	NA	NA	NA	NA
VFI27361.1|1334719_1337821_-	DNA-polymerase III alpha-chain	NA	A0A291AWR1	Streptomyces_phage	32.8	4.0e-114
VFI27365.1|1338167_1340441_+	x-prolyl-dipeptidyl aminopeptidase	NA	NA	NA	NA	NA
VFI27370.1|1340457_1340928_+	arginine repressor	NA	NA	NA	NA	NA
VFI27375.1|1341433_1344784_-	type I restriction-modification system R subunit	NA	A0A2H4P9W3	Gordonia_phage	24.8	3.1e-11
VFI27380.1|1344813_1345395_-	type I restriction-modification system subunit S	NA	NA	NA	NA	NA
1344872:1344931	attL	AATTGTGATTTGTCGACCAGGGCTACAAAGTCTGCGAACTCATTTTGGAGGGCTAGTGGG	NA	NA	NA	NA
VFI27385.1|1345417_1346383_-|integrase	integrase/recombinase, phage integrase family protein	integrase	A0A2H4JAA2	uncultured_Caudovirales_phage	29.6	1.8e-33
VFI27385.1|1345417_1346383_-|integrase	integrase/recombinase, phage integrase family protein	integrase	A0A2H4JAA2	uncultured_Caudovirales_phage	29.6	1.8e-33
1347277:1347346	attR	AATTGTGATTTGTCGACCAGGGCTACAAAGTCTGCGAACTCATTTTGGAGGGCTAGTGGGGGGAGGGGGA	NA	NA	NA	NA
>prophage 14
LR216053	Streptococcus pneumoniae strain 2245STDY6106635 genome assembly, chromosome: 1	2240045	1374220	1416406	2240045	protease,transposase,integrase	Streptococcus_phage(23.08%)	48	1366125:1366142	1419442:1419459
1366125:1366142	attL	AAAACACTGTTTTGAGGT	NA	NA	NA	NA
VFI27518.1|1374220_1374799_+|transposase	degenerate transposase	transposase	A0A1S5SBP9	Streptococcus_phage	80.8	7.5e-75
VFI27523.1|1374795_1375323_+|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	96.0	1.3e-89
VFI27528.1|1375408_1376611_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
VFI27533.1|1376983_1377214_-	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
VFI27538.1|1377381_1378026_-	pyroglutamyl-peptidase I	NA	NA	NA	NA	NA
VFI27543.1|1378040_1378964_-	permease	NA	NA	NA	NA	NA
VFI27548.1|1378960_1379650_-	permease	NA	NA	NA	NA	NA
VFI27553.1|1379714_1380419_-	extracellular oligopeptide-binding protein	NA	NA	NA	NA	NA
VFI27558.1|1380474_1381497_-	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
VFI27563.1|1381628_1384064_-	topoisomerase IV subunit A, ParC	NA	G3M9Z5	Bacillus_virus	31.3	1.9e-95
VFI27568.1|1384412_1384520_-	N-6 DNA methylase	NA	NA	NA	NA	NA
VFI27573.1|1384519_1386463_-	topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	43.0	7.0e-125
VFI27578.1|1386598_1387240_+	putative glycerol-3-phosphate acyltransferase PlsY	NA	NA	NA	NA	NA
VFI27583.1|1387319_1388549_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	89.0	2.1e-212
VFI27588.1|1388677_1389511_-|integrase	integrase core domain-containing protein	integrase	A0A1B1P773	Bacillus_phage	47.4	5.1e-56
VFI27593.1|1389510_1389678_-|transposase	transposase	transposase	NA	NA	NA	NA
VFI27598.1|1389813_1390026_-|transposase	transposase	transposase	NA	NA	NA	NA
VFI27603.1|1390110_1391067_-	ABC transporter, membrane-spanning permease	NA	NA	NA	NA	NA
VFI27608.1|1391069_1392128_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
VFI27613.1|1392120_1393656_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	32.5	1.4e-19
VFI27618.1|1393799_1394852_-	lipoprotein	NA	NA	NA	NA	NA
VFI27624.1|1394942_1395332_-	cytidine deaminase	NA	NA	NA	NA	NA
VFI27629.1|1395318_1395981_-	deoxyribose-phosphate aldolase	NA	NA	NA	NA	NA
VFI27634.1|1395998_1397276_-	thymidine phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	51.7	1.4e-113
VFI27639.1|1397272_1397854_-	16S RNA G1207 methylase RsmC	NA	NA	NA	NA	NA
VFI27645.1|1398236_1398473_-	membrane protein (pseudogene)	NA	NA	NA	NA	NA
VFI27650.1|1398662_1399583_+	pantothenate kinase	NA	NA	NA	NA	NA
VFI27655.1|1399650_1399887_+	putative 30S ribosomal protein S20	NA	NA	NA	NA	NA
VFI27660.1|1399939_1400464_+	topology modulation protein	NA	A0A097BYE2	Leuconostoc_phage	41.8	1.4e-27
VFI27664.1|1400486_1401197_-	purine nucleoside phosphorylase	NA	NA	NA	NA	NA
VFI27669.1|1401854_1402367_-	pneumolysin	NA	NA	NA	NA	NA
VFI27674.1|1402391_1402967_-	thiol-activated cytolysin	NA	NA	NA	NA	NA
VFI27679.1|1402976_1403384_-	topology modulation protein	NA	NA	NA	NA	NA
VFI27684.1|1403847_1404657_-	purine nucleoside phosphorylase	NA	NA	NA	NA	NA
VFI27689.1|1404672_1405215_-	phosphopentomutase	NA	NA	NA	NA	NA
VFI27694.1|1405216_1406428_-	phosphopentomutase	NA	NA	NA	NA	NA
VFI27701.1|1406441_1407125_-	ribose-5-phosphate isomerase A	NA	NA	NA	NA	NA
VFI27706.1|1407406_1408279_-	carbohydrate kinase	NA	NA	NA	NA	NA
VFI27711.1|1408420_1409278_-	FolD bifunctional protein; includes: methylenetetrahydrofolate dehydrogenase, methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	41.5	6.8e-40
VFI27716.1|1409431_1410166_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	43.1	1.3e-36
VFI27721.1|1410165_1410495_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
VFI27726.1|1410439_1410850_-	amino acid ABC transporter permeae	NA	NA	NA	NA	NA
VFI27731.1|1411039_1411270_+	Protein of uncharacterised function (DUF1797)	NA	NA	NA	NA	NA
VFI27735.1|1411498_1413757_+|protease	ATP-dependent Clp protease, ATP-binding subunit	protease	K4FB40	Cronobacter_phage	40.2	1.3e-127
VFI27740.1|1414482_1414812_-|transposase	IS630-Spn1, transposase Orf1	transposase	NA	NA	NA	NA
VFI27746.1|1414922_1415345_+	mutT/nudix family protein	NA	NA	NA	NA	NA
VFI27751.1|1415509_1415809_+	Domain of uncharacterised function (DUF1827)	NA	NA	NA	NA	NA
VFI27757.1|1415917_1416406_-|transposase	IS3-Spn1 transposase, truncation	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	51.6	4.3e-39
1419442:1419459	attR	AAAACACTGTTTTGAGGT	NA	NA	NA	NA
>prophage 15
LR216053	Streptococcus pneumoniae strain 2245STDY6106635 genome assembly, chromosome: 1	2240045	1517208	1566442	2240045	protease,tRNA,transposase	Streptococcus_phage(27.27%)	51	NA	NA
VFI28310.1|1517208_1517859_-|tRNA	asparaginyl-tRNA synthetase	tRNA	A0A2K9L2U8	Tupanvirus	37.8	4.7e-33
VFI28314.1|1517869_1518553_-|tRNA	asparaginyl-tRNA synthetase	tRNA	A0A2K9L424	Tupanvirus	31.6	1.2e-15
VFI28319.1|1518571_1518937_-	lactoylglutathione lyase	NA	NA	NA	NA	NA
VFI28324.1|1518929_1520117_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
VFI28329.1|1520113_1520545_-	peptidase propeptide and ypeb domain-containing protein	NA	NA	NA	NA	NA
VFI28334.1|1520922_1521471_+	flavoprotein	NA	NA	NA	NA	NA
VFI28339.1|1521748_1522477_-	protein YaaA	NA	A0A1X9I5I0	Streptococcus_phage	39.0	4.4e-40
VFI28343.1|1522555_1522720_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFI28348.1|1522786_1524382_-	membrane protein	NA	NA	NA	NA	NA
VFI28353.1|1524393_1524804_-	polypeptide deformylase	NA	A0A2I7R224	Vibrio_phage	32.2	1.3e-09
VFI28359.1|1524919_1525711_-	putative S-transferase	NA	NA	NA	NA	NA
VFI28364.1|1525723_1528420_-	cation transporter E1-E2 family ATPase	NA	M1I547	Acanthocystis_turfacea_Chlorella_virus	28.6	6.2e-71
VFI28369.1|1528723_1529908_+	cation efflux family protein	NA	NA	NA	NA	NA
VFI28374.1|1530086_1531343_+|transposase	IS1167, transposase	transposase	A0A1S5SBP9	Streptococcus_phage	93.3	6.0e-226
VFI28379.1|1531472_1533344_-	ATPase component of ABC transporter with duplicated ATPase domains	NA	A0A2K9L3Z8	Tupanvirus	31.3	4.6e-57
VFI28384.1|1533340_1534525_-|tRNA	tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	32.3	2.3e-38
VFI28390.1|1534536_1535304_-	dihydrodipicolinate reductase	NA	NA	NA	NA	NA
VFI28394.1|1535569_1536418_-	DegV family protein	NA	NA	NA	NA	NA
VFI28398.1|1536419_1536794_-|transposase	transposase	transposase	NA	NA	NA	NA
VFI28402.1|1536867_1538127_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
VFI28406.1|1538116_1538221_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
VFI28410.1|1538244_1539024_-	lipoprotein, putative	NA	NA	NA	NA	NA
VFI28414.1|1539010_1539868_-	DNA integrity scanning protein DisA	NA	NA	NA	NA	NA
VFI28418.1|1540003_1540972_+	thioredoxin reductase	NA	Q9JRK7	Streptococcus_phage	100.0	2.8e-66
VFI28422.1|1541005_1541917_-	putative sporulation transcription regulator whiA	NA	Q7AWZ3	Streptococcus_phage	95.4	1.3e-153
VFI28427.1|1541913_1542891_-	transporter	NA	A1IMD5	Streptococcus_phage	99.7	3.4e-184
VFI28432.1|1542887_1543778_-	P-loop-containing kinase	NA	A0A0R8VB27	Thermobifida_phage	29.8	3.9e-06
VFI28437.1|1543829_1544210_-	endoribonuclease L-PSP	NA	NA	NA	NA	NA
VFI28442.1|1544220_1544808_-	ribosome biogenesis GTP-binding protein YsxC	NA	NA	NA	NA	NA
VFI28447.1|1544816_1546049_-|protease	ATP-dependent Clp protease, ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	59.2	1.1e-131
VFI28452.1|1546080_1546251_-	membrane associated protein	NA	NA	NA	NA	NA
VFI28457.1|1546250_1546757_-	dihydrofolate reductase	NA	A0A1B2IAU3	Erwinia_phage	33.3	4.6e-20
VFI28462.1|1546886_1547405_-	DPS family peroxide resistance protein	NA	NA	NA	NA	NA
VFI28467.1|1547901_1549374_-	1,4-beta-N-acetylmuramidase	NA	NA	NA	NA	NA
VFI28472.1|1549443_1550202_-	triosephosphate isomerase	NA	NA	NA	NA	NA
VFI28477.1|1550299_1550977_-	DNA replication protein	NA	A0A1X9I617	Streptococcus_phage	41.3	2.2e-09
VFI28482.1|1550985_1551930_-	homoserine O-succinyltransferase	NA	NA	NA	NA	NA
VFI28487.1|1552111_1552624_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	47.3	9.1e-32
VFI28492.1|1552710_1553469_-	methyltransferase type 11	NA	NA	NA	NA	NA
VFI28497.1|1553969_1555100_-	sugar ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.2	4.7e-20
VFI28502.1|1555549_1556125_-	amidases related to nicotinamidase	NA	G3MA16	Bacillus_virus	35.9	3.3e-22
VFI28507.1|1556124_1556913_-	GTP-sensing transcriptional pleiotropic repressor	NA	NA	NA	NA	NA
VFI28512.1|1557176_1558751_-	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	36.8	1.9e-59
VFI28517.1|1558949_1560176_-	major facilitator; oxalate:formate antiporter	NA	NA	NA	NA	NA
VFI28522.1|1560368_1561685_+	oxidoreductase, pyridine nucleotide-disulfide class I, Mercury (II) reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	44.1	1.3e-98
VFI28527.1|1561783_1563127_+	UDP-N-acetylmuramyl tripeptide synthetase, Mur ligase	NA	NA	NA	NA	NA
VFI28532.1|1563126_1563909_+	cobyric acid synthase	NA	NA	NA	NA	NA
VFI28537.1|1564034_1565117_+	X-Pro dipeptidase	NA	NA	NA	NA	NA
VFI28542.1|1565441_1565783_-|transposase	IS3-Spn1 transposase, truncation	transposase	A0A0C5AEA5	Paenibacillus_phage	42.6	2.8e-13
VFI28547.1|1565792_1566275_-|transposase	transposase-like protein, ISSpn1 ISSpn3	transposase	A0A1B1P773	Bacillus_phage	46.3	8.3e-27
VFI28552.1|1566274_1566442_-|transposase	IS3-Spn1 transposase	transposase	NA	NA	NA	NA
>prophage 16
LR216053	Streptococcus pneumoniae strain 2245STDY6106635 genome assembly, chromosome: 1	2240045	1809434	1816766	2240045		uncultured_Mediterranean_phage(33.33%)	9	NA	NA
VFI29792.1|1809434_1810136_+	putative UDP-glucose 4-epimerase	NA	A0A2K9L1R4	Tupanvirus	35.1	6.0e-34
VFI29797.1|1810558_1811518_+	iron-compound ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	40.8	4.0e-57
VFI29801.1|1811507_1812464_+	ferric iron ABC transporter membrane-spanning permease	NA	NA	NA	NA	NA
VFI29807.1|1812460_1813213_+	ferrichrome transport ATP-binding protein FhuC	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	27.9	5.6e-14
VFI29812.1|1813308_1814274_+	iron-compound ABC transporter iron-compound-binding protein	NA	NA	NA	NA	NA
VFI29817.1|1814498_1814741_-	alpha-hemolysin family protein	NA	A0A2H4PQM5	Staphylococcus_phage	59.4	1.3e-17
VFI29822.1|1814740_1815463_-	ribosomal large subunit pseudouridine synthase B	NA	NA	NA	NA	NA
VFI29827.1|1815449_1816019_-	segregation and condensation protein B	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	34.9	5.0e-15
VFI29834.1|1816037_1816766_-	segregation and condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	22.3	5.3e-09
>prophage 17
LR216053	Streptococcus pneumoniae strain 2245STDY6106635 genome assembly, chromosome: 1	2240045	1989781	2034139	2240045	portal,tail,holin,terminase,head	Streptococcus_phage(98.51%)	70	NA	NA
VFI30690.1|1989781_1990039_-	Uncharacterised protein	NA	A0A126GGL1	Streptococcus_phage	100.0	1.4e-41
VFI30695.1|1990270_1991227_-	autolysin	NA	A0A1S5SDA3	Streptococcus_phage	100.0	8.7e-145
VFI30700.1|1991226_1991562_-|holin	phage holin, LL-H family	holin	A0A1S5SF76	Streptococcus_phage	100.0	3.5e-40
VFI30705.1|1991565_1991865_-	Uncharacterised protein	NA	X2KT07	Streptococcus_phage	100.0	1.9e-45
VFI30710.1|1991873_1992224_-	phage protein	NA	X2KPI8	Streptococcus_phage	100.0	4.7e-64
VFI30715.1|1992226_1992430_-	phage protein	NA	A0A1S5SDH0	Streptococcus_phage	100.0	6.6e-26
VFI30720.1|1992410_1992527_-	phage protein	NA	A0A1S5SCF0	Streptococcus_phage	100.0	4.0e-12
VFI30725.1|1992523_1999804_-	PblB	NA	A0A1S5SDP7	Streptococcus_phage	100.0	0.0e+00
VFI30730.1|1999808_2000159_-	prophage protein	NA	A0A1S5SCJ5	Streptococcus_phage	100.0	1.2e-62
VFI30735.1|2000167_2003821_-	TMP repeat family	NA	A0A1S5SD92	Streptococcus_phage	100.0	0.0e+00
VFI30740.1|2003807_2004158_-	Uncharacterised protein	NA	A0A1S5S814	Streptococcus_phage	100.0	1.2e-56
VFI30745.1|2004196_2004577_-	prophage protein	NA	A0A141DZN3	Streptococcus_phage	100.0	1.6e-65
VFI30750.1|2004581_2004995_-|tail	major tail protein	tail	A0A1S5SDK3	Streptococcus_phage	100.0	2.5e-72
VFI30754.1|2004997_2005366_-	conserved structural protein, putative	NA	A0A1S5SFB8	Streptococcus_phage	100.0	1.2e-65
VFI30758.1|2005362_2005878_-	Lj965 prophage protein	NA	X2KPH9	Streptococcus_phage	100.0	2.7e-92
VFI30761.1|2005852_2006191_-	Uncharacterised protein	NA	A0A1S5S812	Streptococcus_phage	100.0	1.3e-55
VFI30764.1|2006171_2006483_-|head,tail	Phage gp6-like head-tail connector protein	head,tail	A0A1S5SES7	Streptococcus_phage	100.0	2.5e-48
VFI30767.1|2006484_2006673_-	Uncharacterised protein	NA	A0A1S5SF62	Streptococcus_phage	100.0	6.5e-28
VFI30770.1|2006662_2006845_-	transcription termination factor	NA	A0A1S5SF01	Streptococcus_phage	100.0	1.2e-23
VFI30773.1|2006856_2007699_-	MHP	NA	A0A1S5SF88	Streptococcus_phage	100.0	3.8e-152
VFI30776.1|2007704_2008289_-	phage scaffold protein	NA	A0A1S5S806	Streptococcus_phage	100.0	4.3e-86
VFI30779.1|2008515_2008767_-	gp37	NA	A0A1S5SBY0	Streptococcus_phage	100.0	8.9e-41
VFI30782.1|2008768_2009032_-	prophage Lp2 protein 33	NA	A0A1S5SIN5	Streptococcus_phage	100.0	2.4e-44
VFI30785.1|2009074_2009488_-	metal dependent phosphohydrolase, HD region	NA	A0A060QNR4	Streptococcus_phage	100.0	1.1e-67
VFI30788.1|2009484_2009694_-	phage protein	NA	A0A141E1P2	Streptococcus_phage	100.0	2.6e-33
VFI30791.1|2009695_2011279_-|head	phage putative head morphogenesis protein, SPP1 gp7 family	head	A0A1S5SDF1	Streptococcus_phage	100.0	1.9e-301
VFI30794.1|2011241_2012711_-|portal	phage portal protein, SPP1 family	portal	A0A1S5SDJ7	Streptococcus_phage	100.0	2.7e-278
VFI30797.1|2012722_2014021_-|terminase	phage terminase large subunit	terminase	A0A1S5SBX3	Streptococcus_phage	100.0	2.5e-259
VFI30800.1|2013998_2014478_-|terminase	phage terminase small subunit	terminase	A0A1S5SFR0	Streptococcus_phage	100.0	2.8e-83
VFI30803.1|2014912_2015335_-	phage protein	NA	A0A141E1Y4	Streptococcus_phage	100.0	6.3e-71
VFI30806.1|2015404_2015770_-	Uncharacterised protein	NA	A0A1S5SDW3	Streptococcus_phage	100.0	1.3e-53
VFI30809.1|2015766_2016087_-	Uncharacterised protein	NA	A0A1S5SDY8	Streptococcus_phage	100.0	7.6e-53
VFI30812.1|2016073_2016322_-	Uncharacterised protein	NA	A0A1S5SDI3	Streptococcus_phage	100.0	2.6e-40
VFI30815.1|2016342_2016522_-	Uncharacterised protein	NA	A0A1S5S7Z6	Streptococcus_phage	100.0	4.3e-29
VFI30818.1|2016514_2016910_-	phage protein	NA	A0A1S5SD94	Streptococcus_phage	100.0	3.3e-74
VFI30820.1|2016924_2017098_-	Uncharacterised protein	NA	Q0R590	Streptococcus_phage	100.0	1.7e-22
VFI30823.1|2017097_2017307_-	Uncharacterised protein	NA	A0A1S5S9F0	Streptococcus_phage	100.0	2.0e-33
VFI30826.1|2017307_2017979_-	phage protein	NA	A0A141E1Y8	Streptococcus_phage	100.0	4.1e-125
VFI30829.1|2017968_2018298_-	gp24	NA	A0A141E1Y9	Streptococcus_phage	100.0	2.3e-60
VFI30832.1|2018342_2018765_-	Uncharacterised protein	NA	A0A141E1Q1	Streptococcus_phage	100.0	2.8e-79
VFI30836.1|2018808_2019237_-	holliday junction resolvase	NA	A0A1S5SD90	Streptococcus_phage	100.0	5.4e-78
VFI30839.1|2019233_2019563_-	phage protein	NA	A0A141E1Z2	Streptococcus_phage	100.0	1.6e-53
VFI30842.1|2019576_2019786_-	Uncharacterised protein	NA	A0A1S5SFI1	Streptococcus_phage	100.0	3.2e-36
VFI30845.1|2019751_2020258_-	methyltransferase	NA	A0A141E1B8	Streptococcus_phage	100.0	2.5e-98
VFI30849.1|2020267_2020684_-	single-strand binding protein family	NA	E8ZDH2	Streptococcus_phage	100.0	3.0e-73
VFI30852.1|2020680_2020779_-	phage protein	NA	A0A141E1Q6	Streptococcus_phage	100.0	2.8e-11
VFI30855.1|2020778_2021114_-	Uncharacterised protein	NA	A0A1S5SBY6	Streptococcus_phage	100.0	2.0e-59
VFI30858.1|2021106_2021595_-	Uncharacterised protein	NA	A0A1S5SBS1	Streptococcus_phage	100.0	1.6e-89
VFI30861.1|2021597_2022638_-	phage protein	NA	A0A060QRX4	Streptococcus_phage	100.0	2.8e-189
VFI30864.1|2022647_2023466_-	phage recombination protein Bet	NA	A0A1S5SD57	Streptococcus_phage	100.0	6.7e-154
VFI30867.1|2023588_2023750_-	Uncharacterised protein	NA	A0A1S5SD47	Streptococcus_phage	100.0	1.4e-23
VFI30870.1|2023742_2023997_-	Uncharacterised protein	NA	A0A1S5SDG7	Streptococcus_phage	100.0	2.7e-37
VFI30873.1|2023989_2024193_-	Uncharacterised protein	NA	A0A141E201	Streptococcus_phage	100.0	2.0e-27
VFI30876.1|2024192_2024354_-	Uncharacterised protein	NA	A0A141E1R4	Streptococcus_phage	100.0	3.7e-24
VFI30879.1|2024425_2025142_-	phage antirepressor protein	NA	A0A1S5SFF6	Streptococcus_phage	100.0	1.5e-133
VFI30883.1|2025165_2025369_-	Phage protein	NA	A0A141E1R6	Streptococcus_phage	100.0	3.0e-31
VFI30886.1|2025618_2025981_-	phage replication protein	NA	A0A1S5SFN6	Streptococcus_phage	100.0	1.4e-63
VFI30889.1|2026053_2026251_-	XRE family transcriptional regulator	NA	A0A1S5SFQ0	Streptococcus_phage	100.0	1.6e-29
VFI30892.1|2026332_2026572_+	ORF065	NA	A0A1S5SD52	Streptococcus_phage	100.0	1.4e-43
VFI30894.1|2026564_2026735_-	DNA, complete genome	NA	A0A141E0V7	Streptococcus_phage	100.0	2.8e-22
VFI30896.1|2027269_2027392_-	Uncharacterised protein	NA	A0A1S5SDF9	Streptococcus_phage	100.0	2.9e-13
VFI30898.1|2027468_2027744_-	Uncharacterised protein	NA	A0A1S5SD97	Streptococcus_phage	100.0	1.7e-45
VFI30900.1|2027905_2028673_+	cI repressor	NA	A0A1S5SFG5	Streptococcus_phage	100.0	1.8e-140
VFI30902.1|2028674_2028875_+	Uncharacterised protein	NA	A0A1S5SFF2	Streptococcus_phage	100.0	7.1e-33
VFI30904.1|2028810_2028981_-	Uncharacterised protein	NA	A0A1S5SDF5	Streptococcus_phage	100.0	1.5e-23
VFI30906.1|2029056_2030502_+	site-specific recombinase/resolvase	NA	A0A1S5SDJ4	Streptococcus_phage	100.0	2.2e-277
VFI30908.1|2030583_2031600_-	competence protein	NA	NA	NA	NA	NA
VFI30910.1|2031547_2032489_-	competence protein	NA	NA	NA	NA	NA
VFI30912.1|2032564_2032930_-	DNA binding protein	NA	NA	NA	NA	NA
VFI30914.1|2033080_2034139_-	alcohol dehydrogenase	NA	E3SJ82	Synechococcus_phage	26.8	2.7e-14
>prophage 18
LR216053	Streptococcus pneumoniae strain 2245STDY6106635 genome assembly, chromosome: 1	2240045	2217899	2226653	2240045	protease	Streptococcus_phage(33.33%)	9	NA	NA
VFI31228.1|2217899_2218739_-	cobalt ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	32.6	1.1e-15
VFI31230.1|2218723_2219551_-	ABCtransporter ATP-binding protein cobalt transport	NA	G9BWD6	Planktothrix_phage	32.9	2.8e-22
VFI31232.1|2219547_2220093_-	phosphatidylglycerophosphate synthase	NA	NA	NA	NA	NA
VFI31234.1|2220103_2220925_-	transcriptional regulation protein	NA	NA	NA	NA	NA
VFI31236.1|2220966_2222250_-|protease	zinc-dependent protease	protease	A0A1E1EST3	Acanthamoeba_castellanii_mimivirus	30.0	8.4e-18
VFI31238.1|2222246_2223497_-|protease	zinc-dependent protease	protease	A0A1X9I714	Streptococcus_phage	42.3	2.7e-93
VFI31240.1|2223655_2224024_+	S4 domain-containing protein YaaA	NA	A0A1X9I5V8	Streptococcus_phage	57.3	7.0e-18
VFI31242.1|2224026_2225124_+	recombination protein recF	NA	NA	NA	NA	NA
VFI31244.1|2225174_2226653_-	inosine-5-monophosphate dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	2.2e-94
