The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR216023	Streptococcus pneumoniae strain 2245STDY5699475 genome assembly, chromosome: 1	2104636	4185	52812	2104636	bacteriocin,transposase,tRNA	uncultured_virus(12.5%)	43	NA	NA
VFH55250.1|4185_4755_+|tRNA	peptidyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
VFH55253.1|4755_8265_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
VFH55256.1|8322_8589_+	S4 RNA-binding domain-containing protein	NA	NA	NA	NA	NA
VFH55260.1|8581_8950_+	cell division protein	NA	NA	NA	NA	NA
VFH55263.1|8954_9077_+	putative extracellular protein	NA	NA	NA	NA	NA
VFH55266.1|9069_10338_+	beta-lactamase	NA	NA	NA	NA	NA
VFH55269.1|10334_11612_+	MesJ/Ycf62 family protein	NA	M1IC97	Acanthocystis_turfacea_Chlorella_virus	24.1	1.9e-06
VFH55272.1|11615_12158_+	hypoxanthine guanine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	28.9	2.7e-10
VFH55275.1|12173_14132_+	cell-division protein	NA	H8ZJI5	Ostreococcus_tauri_virus	45.8	2.4e-109
VFH55278.1|14253_14733_+	competence-specific global transcription modulator	NA	NA	NA	NA	NA
VFH55281.1|21067_21274_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	83.8	8.1e-24
VFH55284.1|21590_21827_+	recombination regulator RecX	NA	NA	NA	NA	NA
VFH55287.1|22015_23344_+	adenylosuccinate synthetase	NA	L7Y4J5	Megavirus	37.1	3.6e-72
VFH55290.1|23544_24012_+	cytidine/deoxycytidylate deaminase	NA	NA	NA	NA	NA
VFH55293.1|24197_24641_+	deoxyuridine 5'-triphosphate nucleotidohydrolase	NA	Q2WG49	Clostridium_botulinum_D_phage	47.3	2.1e-29
VFH55296.1|24600_25158_+	phosphoglycerate mutase family protein	NA	NA	NA	NA	NA
VFH55299.1|25270_26533_+	DNA repair protein	NA	NA	NA	NA	NA
VFH55302.1|26605_27103_+	carbonic anhydrase	NA	NA	NA	NA	NA
VFH55305.1|27123_27468_+	repair protein	NA	NA	NA	NA	NA
VFH55308.1|27464_28001_+|transposase	IS861 transposase Orf1	transposase	NA	NA	NA	NA
VFH55311.1|27976_28816_+|transposase	transposase	transposase	A0A1B1P773	Bacillus_phage	50.9	2.8e-62
VFH55314.1|28821_29382_+	repair protein	NA	NA	NA	NA	NA
VFH55317.1|29526_30495_+	ribose-phosphate pyrophosphokinase	NA	A0A1V0SHF7	Hokovirus	34.7	6.7e-44
VFH55320.1|30612_31140_+|transposase	nuclease family transposase	transposase	NA	NA	NA	NA
VFH55323.1|31179_31557_+	competence-induced protein Ccs16	NA	NA	NA	NA	NA
VFH55326.1|32040_34710_+	DNA polymerase I - 3'-5' exonuclease and polymerase domains	NA	A0A218MKQ4	uncultured_virus	31.5	5.6e-56
VFH55329.1|34794_35232_+	CoA-binding protein	NA	NA	NA	NA	NA
VFH55332.1|35272_35521_+	chlorohydrolase	NA	NA	NA	NA	NA
VFH55335.1|35549_36560_-	membrane protein	NA	NA	NA	NA	NA
VFH55338.1|36708_37878_+	aspartate aminotransferase	NA	NA	NA	NA	NA
VFH55341.1|37874_38645_+	DNA repair protein RecO	NA	NA	NA	NA	NA
VFH55344.1|38641_39634_+	fatty acid/phospholipid synthesis protein	NA	NA	NA	NA	NA
VFH55347.1|39639_39873_+	acyl carrier protein	NA	A0A2I7RIC8	Vibrio_phage	40.6	3.3e-05
VFH55350.1|39915_40209_+|transposase	transposase-like protein, IS1381 ISSpn7	transposase	NA	NA	NA	NA
VFH55353.1|40411_40642_+|bacteriocin	bacteriocin BlpO	bacteriocin	NA	NA	NA	NA
VFH55356.1|40644_40770_+|bacteriocin	bacteriocin BlpO	bacteriocin	NA	NA	NA	NA
VFH55359.1|41356_43510_+	competence factor transporting ATP-binding protein/permease ComA	NA	W8CYL7	Bacillus_phage	28.0	9.4e-46
VFH55362.1|43522_44872_+	competence factor transport protein ComB	NA	NA	NA	NA	NA
VFH55365.1|45041_45749_+	phosphoribosylaminoimidazole-succinocarboxamide synthetase	NA	A0A1D8KNF0	Synechococcus_phage	39.2	1.8e-41
VFH55368.1|45950_49676_+	phosphoribosylformylglycinamidine synthase II (FGAM synthetase)	NA	A6N228	Microbacterium_phage	25.8	2.1e-37
VFH55371.1|49768_51211_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	35.4	7.4e-55
VFH55374.1|51247_52270_+	phosphoribosylaminoimidazole synthetase	NA	A0A1D7SE90	Cyanophage	43.9	1.2e-64
VFH55377.1|52266_52812_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.0	9.7e-24
>prophage 2
LR216023	Streptococcus pneumoniae strain 2245STDY5699475 genome assembly, chromosome: 1	2104636	103374	193606	2104636	bacteriocin,transposase,tRNA,protease,integrase	Streptococcus_phage(39.13%)	96	183877:183901	196440:196464
VFH55528.1|103374_103626_+|bacteriocin	bacteriocin, putative	bacteriocin	NA	NA	NA	NA
VFH55532.1|103677_105786_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
VFH55536.1|105782_106424_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.3	8.2e-22
VFH55540.1|106630_107437_+	amino acid ABC transporter periplasmic amino acid-binding protein	NA	NA	NA	NA	NA
VFH55544.1|107453_108650_+	argininosuccinate synthase	NA	NA	NA	NA	NA
VFH55548.1|108673_109498_+	argininosuccinate lyase	NA	NA	NA	NA	NA
VFH55552.1|109786_110650_-	helix-turn-helix domain protein	NA	NA	NA	NA	NA
VFH55556.1|111115_112072_+	Bacteriocin ABC transoporter	NA	NA	NA	NA	NA
VFH55560.1|112103_113321_+	Bacteriocin ABC transoporter	NA	W8CYL7	Bacillus_phage	30.3	1.5e-32
VFH55564.1|113313_113781_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFH55568.1|113777_115130_+	Secreted protein	NA	NA	NA	NA	NA
VFH55572.1|115275_115656_+	Membrane protein	NA	NA	NA	NA	NA
VFH55576.1|116904_117069_+	Membrane protein	NA	NA	NA	NA	NA
VFH55580.1|117236_117608_+	Membrane protein	NA	NA	NA	NA	NA
VFH55584.1|118201_118327_+	Membrane protein	NA	NA	NA	NA	NA
VFH55587.1|118632_119691_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFH55591.1|120005_120821_+	Leader peptidase	NA	NA	NA	NA	NA
VFH55595.1|121358_121733_+	Membrane protein	NA	NA	NA	NA	NA
VFH55599.1|121940_122843_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFH55603.1|122898_123252_+	Membrane protein	NA	NA	NA	NA	NA
VFH55607.1|123248_123977_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFH55611.1|124455_124653_+|bacteriocin	putative bacteriocin	bacteriocin	NA	NA	NA	NA
VFH55615.1|125111_125615_+	Lmo2277 protein	NA	M1Q0Z8	Streptococcus_phage	52.7	2.4e-45
VFH55619.1|125901_128004_+	surface protein A	NA	NA	NA	NA	NA
VFH55623.1|128404_129526_+|tRNA	tRNA-specific 2-thiouridylase MnmA	tRNA	NA	NA	NA	NA
VFH55627.1|129666_130122_+	mutT/nudix family protein	NA	NA	NA	NA	NA
VFH55631.1|130131_132045_+|tRNA	tRNA uridine 5-carboxymethylaminomethyl modification protein GidA	tRNA	NA	NA	NA	NA
VFH55635.1|132424_134104_-	metallo-beta-lactamase superfamily protein 1	NA	NA	NA	NA	NA
VFH55639.1|134105_134339_-	transcriptional regulator	NA	NA	NA	NA	NA
VFH55643.1|134618_134942_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFH55648.1|135154_135307_-|bacteriocin	bacteriocin-type signal sequence domain-containing protein	bacteriocin	NA	NA	NA	NA
VFH55652.1|135308_135494_-	excreted peptide	NA	NA	NA	NA	NA
VFH55656.1|135671_136355_+	molecular chaperone	NA	NA	NA	NA	NA
VFH55662.1|136351_136789_+	acetyltransferase	NA	NA	NA	NA	NA
VFH55667.1|136778_137789_+|protease	glycoprotease family protein	protease	NA	NA	NA	NA
VFH55672.1|137828_138215_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	72.4	1.4e-45
VFH55677.1|138205_138823_-|transposase	transposase-like protein, IS1167	transposase	A0A1S5SBP9	Streptococcus_phage	70.9	2.3e-61
VFH55682.1|140404_141610_+	glycosyl transferase, group 1 family protein	NA	NA	NA	NA	NA
VFH55687.1|141602_142475_+	glycosyltransferase	NA	NA	NA	NA	NA
VFH55692.1|142561_144178_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	36.0	3.0e-28
VFH55697.1|144197_144407_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFH55702.1|144456_144867_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFH55707.1|144878_145628_+	N-acetylglucosaminylphosphatidylinositol deacetylase superfamily	NA	NA	NA	NA	NA
VFH55712.1|145640_146813_+	UDP-glucose 6-dehydrogenase	NA	O41091	Paramecium_bursaria_Chlorella_virus	43.5	5.1e-78
VFH55717.1|147208_148072_+	transcriptional regulator	NA	NA	NA	NA	NA
VFH55722.1|148362_148467_+|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
VFH55727.1|148649_151442_+	Lantibiotic biosynthesis protein	NA	NA	NA	NA	NA
VFH55732.1|151425_152703_+	lantibiotic biosynthesis protein	NA	A0A2H4PQH9	Staphylococcus_phage	24.2	2.1e-16
VFH55736.1|152731_153988_+	lantibiotic efflux protein	NA	NA	NA	NA	NA
VFH55741.1|154066_154744_+|protease	putative metal-dependent membrane protease	protease	NA	NA	NA	NA
VFH55743.1|154755_155421_+|protease	putative metal-dependent membrane protease	protease	NA	NA	NA	NA
VFH55748.1|155492_156719_+	transporter, major facilitator family protein	NA	NA	NA	NA	NA
VFH55754.1|156994_157192_-	chlorohydrolase	NA	NA	NA	NA	NA
VFH55759.1|157262_157919_+	branched-chain amino acid permease	NA	NA	NA	NA	NA
VFH55764.1|157908_158232_+	branched-chain amino acid transport protein	NA	NA	NA	NA	NA
VFH55769.1|158335_159166_+	ABC transporter substrate-binding lipoprotein	NA	NA	NA	NA	NA
VFH55774.1|159387_160218_+	ABC transporter substrate-binding lipoprotein	NA	NA	NA	NA	NA
VFH55779.1|160371_161226_+	ABC transporter substrate-binding lipoprotein	NA	NA	NA	NA	NA
VFH55784.1|161325_162699_+	deacylase	NA	NA	NA	NA	NA
VFH55789.1|162691_163753_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.7	6.7e-29
VFH55794.1|163754_164447_+	ABC transporter permease	NA	NA	NA	NA	NA
VFH55799.1|164476_165046_-	permease	NA	NA	NA	NA	NA
VFH55804.1|165180_165795_+	putative integral membrane protein	NA	NA	NA	NA	NA
VFH55809.1|165760_167443_+	sensor histidine kinase	NA	NA	NA	NA	NA
VFH55814.1|167454_168741_+	response regulator	NA	NA	NA	NA	NA
VFH55819.1|168792_169326_+	major facilitator superfamily permease	NA	NA	NA	NA	NA
VFH55824.1|169403_169874_+	flavoprotein NrdI	NA	NA	NA	NA	NA
VFH55829.1|170166_171429_-	Nramp family metal ion transporter	NA	NA	NA	NA	NA
VFH55834.1|171738_172197_-	integral membrane protein	NA	NA	NA	NA	NA
VFH55839.1|172193_172634_-	response regulator	NA	NA	NA	NA	NA
VFH55844.1|172839_174789_+	DNA mismatch repair protein hexB	NA	A0A1B2LRQ5	Wolbachia_phage	32.1	1.7e-70
VFH55849.1|175112_175580_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	52.6	3.7e-40
VFH55854.1|175580_176786_-	3,4-dihydroxy-2-butanone 4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	49.5	3.5e-106
VFH55859.1|176805_177441_-	riboflavin synthase subunit alpha	NA	A0A2H4PQS5	Staphylococcus_phage	47.4	2.0e-44
VFH55864.1|177425_178526_-	riboflavin biosynthesis protein RibD	NA	A0A1V0SE20	Indivirus	38.2	5.0e-51
VFH55869.1|178930_179524_+	holiday junction DNA helicase RuvA	NA	NA	NA	NA	NA
VFH55873.1|179533_180097_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
VFH55878.1|180093_180771_+|protease	caax amino protease family protein	protease	NA	NA	NA	NA
VFH55883.1|180907_181939_-	MccC family protein	NA	NA	NA	NA	NA
VFH55888.1|182193_182877_-	membrane protein	NA	NA	NA	NA	NA
VFH55893.1|182888_183833_-	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
183877:183901	attL	TATTATACTACAAAATCGGCCTTTT	NA	NA	NA	NA
VFH55898.1|183981_185148_-|integrase	prophage Sa05, site-specific recombinase phage integrase	integrase	A0A1X9I5Y5	Streptococcus_phage	69.8	7.4e-154
VFH55903.1|185529_186189_-	transcriptional regulator	NA	A0A1W6JQE6	Staphylococcus_phage	44.4	1.1e-08
VFH55908.1|186349_186553_+	transcriptional regulator	NA	NA	NA	NA	NA
VFH55913.1|186567_187197_+	phage protein	NA	A0A192Y918	Salmonella_phage	42.1	1.9e-15
VFH55918.1|187631_188084_+	phage protein	NA	NA	NA	NA	NA
VFH55924.1|188080_188281_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFH55929.1|188282_188498_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFH55934.1|188494_188788_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFH55939.1|188768_189110_+	phage protein	NA	M1Q1A9	Streptococcus_phage	29.6	2.0e-06
VFH55944.1|189102_189384_+	phage protein	NA	A0A1X9I5U9	Streptococcus_phage	67.8	7.9e-30
VFH55949.1|189518_190379_+	phage protein	NA	A0A1X9I6L2	Streptococcus_phage	73.8	1.7e-123
VFH55953.1|190431_191901_+	prophage Sa05, P4 family DNA primase	NA	Q9AZI5	Lactococcus_phage	34.5	6.8e-64
VFH55956.1|192251_192419_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFH55959.1|192501_193032_+	phage protein	NA	A0A1X9I5U4	Streptococcus_phage	48.7	6.7e-38
VFH55964.1|193102_193606_+	phage protein	NA	A0A1X9I5V2	Streptococcus_phage	53.0	4.9e-46
196440:196464	attR	TATTATACTACAAAATCGGCCTTTT	NA	NA	NA	NA
>prophage 3
LR216023	Streptococcus pneumoniae strain 2245STDY5699475 genome assembly, chromosome: 1	2104636	288701	337681	2104636	protease,integrase,transposase	Streptococcus_phage(28.57%)	52	279418:279437	329526:329545
279418:279437	attL	GATAGAACTGACGAAGTCAG	NA	NA	NA	NA
VFH56462.1|288701_289409_+|protease	caax amino protease family protein	protease	NA	NA	NA	NA
VFH56467.1|289533_290478_+	dihydropteroate synthase	NA	NA	NA	NA	NA
VFH56472.1|290479_291802_+	dihydrofolate synthetase	NA	NA	NA	NA	NA
VFH56477.1|291782_292337_+	GTP cyclohydrolase	NA	E7DN69	Pneumococcus_phage	44.3	9.8e-40
VFH56482.1|292379_293192_+	bifunctional folate synthesis protein	NA	NA	NA	NA	NA
VFH56487.1|293236_293554_-	Staphylococcal protein of uncharacterised function (DUF960)	NA	NA	NA	NA	NA
VFH56492.1|293910_294357_+	50S ribosomal protein L13	NA	NA	NA	NA	NA
VFH56497.1|294376_294769_+	SSU ribosomal protein S9p (S16e)	NA	NA	NA	NA	NA
VFH56502.1|295030_296251_-|integrase	integrase	integrase	A0A1X9I5Y5	Streptococcus_phage	24.8	8.0e-10
VFH56507.1|296292_296562_-	transcriptional regulator, AlpA family	NA	NA	NA	NA	NA
VFH56511.1|296569_297364_-	Rep protein	NA	NA	NA	NA	NA
VFH56516.1|297535_298309_-	Ser/Thr protein phosphatase family protein	NA	NA	NA	NA	NA
VFH56521.1|298383_299112_-	Ser/Thr protein phosphatase family protein	NA	A0A127AVW0	Bacillus_phage	30.6	4.8e-10
VFH56526.1|299128_299443_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFH56531.1|299538_300858_-	FtsK/SpoIIIE family protein	NA	A0A1S5SFB5	Streptococcus_phage	30.6	8.1e-32
VFH56536.1|300934_301405_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFH56541.1|301417_302245_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFH56546.1|302560_303172_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFH56551.1|303218_303614_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFH56555.1|304097_304523_-|integrase	phage integrase family integrase/recombinase	integrase	NA	NA	NA	NA
VFH56560.1|304669_304846_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFH56565.1|304845_304971_+	filamentation induced by cAMP protein fic	NA	NA	NA	NA	NA
VFH56570.1|305247_307461_+	glycosyl hydrolase, family 31	NA	NA	NA	NA	NA
VFH56575.1|307682_308159_-	gluthatione peroxidase	NA	NA	NA	NA	NA
VFH56580.1|308381_311585_+	hyaluronidase	NA	NA	NA	NA	NA
VFH56585.1|312138_312354_+|transposase	truncated IS200 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	39.5	3.8e-08
VFH56590.1|312729_313359_-	keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase	NA	NA	NA	NA	NA
VFH56595.1|313368_314370_-	carbohydrate kinase, PfkB family	NA	NA	NA	NA	NA
VFH56600.1|314400_315042_-	galactose-6-phosphate isomerase subunit LacB	NA	NA	NA	NA	NA
VFH56605.1|315060_315876_-	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
VFH56610.1|316146_316581_+	PTS system sugar-specific transporter subunit EII	NA	NA	NA	NA	NA
VFH56615.1|316592_317783_+	glucuronyl hydrolase	NA	NA	NA	NA	NA
VFH56620.1|317793_318285_+	N-acetylgalactosamine-specific phosphotransferase EIIB	NA	NA	NA	NA	NA
VFH56625.1|318299_319079_+	PTS system, N-acetylgalactosamine-specific IIC component	NA	NA	NA	NA	NA
VFH56630.1|319065_319884_+	PTS system transporter subunit IID	NA	NA	NA	NA	NA
VFH56635.1|319883_320177_+	preprotein translocase subunit YajC	NA	NA	NA	NA	NA
VFH56640.1|320198_322100_+	oligohyaluronate lyase	NA	NA	NA	NA	NA
VFH56645.1|322159_323161_+	sugar binding transcriptional regulator RegR	NA	NA	NA	NA	NA
VFH56650.1|323285_323606_-	membrane protein	NA	NA	NA	NA	NA
VFH56655.1|323616_323859_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFH56659.1|324011_324416_-	membrane protein	NA	NA	NA	NA	NA
VFH56667.1|324431_324626_-	transcriptional regulator	NA	I3VYZ1	Thermoanaerobacterium_phage	42.6	7.2e-06
VFH56672.1|324791_325742_+	S-adenosyl-methyltransferase mraW	NA	NA	NA	NA	NA
VFH56677.1|325752_326070_+	cell division protein FtsL	NA	NA	NA	NA	NA
VFH56682.1|326073_328326_+	penicillin-binding protein 2X	NA	NA	NA	NA	NA
VFH56687.1|328327_329308_+	UDP-phosphate-UDP-MurNAc-pentapeptide phospho-MurNAc-pentapeptide transferase	NA	NA	NA	NA	NA
VFH56692.1|329744_329834_+	Uncharacterised protein	NA	NA	NA	NA	NA
329526:329545	attR	GATAGAACTGACGAAGTCAG	NA	NA	NA	NA
VFH56697.1|329916_332022_+	Group II intron maturase	NA	H6X3M6	Enterobacteria_phage	37.6	7.6e-117
VFH56702.1|332315_332798_-	S-ribosylhomocysteinase	NA	NA	NA	NA	NA
VFH56707.1|332892_334377_-|protease	ATP-dependent Zn protease	protease	NA	NA	NA	NA
VFH56712.1|334529_336140_+	glucan 1,6-alpha-glucosidase	NA	NA	NA	NA	NA
VFH56718.1|336283_337681_-|transposase	IS1202 transposase	transposase	NA	NA	NA	NA
>prophage 4
LR216023	Streptococcus pneumoniae strain 2245STDY5699475 genome assembly, chromosome: 1	2104636	356456	401378	2104636	integrase,holin,transposase,tRNA	Aeribacillus_phage(16.67%)	38	385547:385562	391627:391642
VFH56810.1|356456_356768_+|transposase	transposase	transposase	NA	NA	NA	NA
VFH56815.1|357360_357519_+|transposase	transposase	transposase	NA	NA	NA	NA
VFH56820.1|357717_359700_+	oligopeptide ABC transporter oligopeptide-binding protein AliA	NA	NA	NA	NA	NA
VFH56825.1|360000_365304_+	endo-alpha-N-acetylgalactosaminidase	NA	NA	NA	NA	NA
VFH56830.1|365470_367630_-	penicillin-binding protein 1A	NA	NA	NA	NA	NA
VFH56835.1|367626_368223_-	recombination protein U	NA	A0A1L2JY30	Aeribacillus_phage	33.9	8.7e-18
VFH56840.1|368288_368816_+	UPF0398 protein SSU05	NA	NA	NA	NA	NA
VFH56845.1|368885_369215_+	cell division initiation protein	NA	NA	NA	NA	NA
VFH56850.1|369700_370858_+	N-6 adenine-specific DNA methylase	NA	NA	NA	NA	NA
VFH56857.1|370870_372241_+	Holliday junction-specific endonuclease	NA	NA	NA	NA	NA
VFH56863.1|372316_373741_+|holin	choline binding protein J	holin	M4QQM4	Ostreococcus_lucimarinus_virus	29.6	2.7e-41
VFH56870.1|373752_374442_+|holin	choline binding protein J	holin	NA	NA	NA	NA
VFH56875.1|374540_375560_+|holin	choline-binding protein Cbp9	holin	NA	NA	NA	NA
VFH56883.1|375677_376910_-	major facilitator superfamily permease	NA	NA	NA	NA	NA
VFH56888.1|376952_377828_-	lanthionine synthetase C-like protein	NA	NA	NA	NA	NA
VFH56894.1|378439_378769_+|holin	choline binding protein C	holin	NA	NA	NA	NA
VFH56900.1|378890_379769_+	mevalonate kinase	NA	NA	NA	NA	NA
VFH56905.1|379750_380704_+	diphosphomevalonate decarboxylase	NA	NA	NA	NA	NA
VFH56910.1|380690_381698_+	phosphomevalonate kinase	NA	NA	NA	NA	NA
VFH56915.1|381681_382692_+	isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2	NA	NA	NA	NA	NA
VFH56920.1|382768_383467_+	transporter	NA	NA	NA	NA	NA
VFH56925.1|383463_384459_+	histidine kinase	NA	NA	NA	NA	NA
VFH56930.1|384472_385105_+	response regulator	NA	NA	NA	NA	NA
VFH56936.1|385105_385348_+	putative DNA alkylation repair enzyme	NA	NA	NA	NA	NA
385547:385562	attL	AAAACAGTGTTTTGAG	NA	NA	NA	NA
VFH56941.1|386024_386264_+	V8-like Glu-specific endopeptidase	NA	NA	NA	NA	NA
VFH56946.1|386260_386938_+|holin	choline binding protein G	holin	NA	NA	NA	NA
VFH56952.1|387230_387596_+|integrase	integrase	integrase	C9E2L6	Enterococcus_phage	41.0	1.1e-18
VFH56957.1|387789_389073_+	FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor)	NA	NA	NA	NA	NA
VFH56962.1|389120_391487_-	recombinase D	NA	A0A0K2FLP8	Brevibacillus_phage	27.2	4.8e-59
VFH56966.1|391765_392380_-	signal peptidase I	NA	NA	NA	NA	NA
391627:391642	attR	CTCAAAACACTGTTTT	NA	NA	NA	NA
VFH56971.1|392383_393265_-	ribonuclease HIII	NA	NA	NA	NA	NA
VFH56975.1|393351_393654_+|tRNA	seryl-tRNA synthetase	tRNA	NA	NA	NA	NA
VFH56980.1|393650_394199_+	CvpA family protein	NA	NA	NA	NA	NA
VFH56985.1|394302_396639_+	mismatch repair ATPase (MutS family)	NA	Q94M10	Lactobacillus_phage	55.1	1.3e-21
VFH56990.1|396981_398304_+	Na+/alanine symporter	NA	NA	NA	NA	NA
VFH56995.1|398521_399070_+	macrophage infectivity potentiator protein	NA	NA	NA	NA	NA
VFH57000.1|399179_400079_+	exfoliative toxin	NA	NA	NA	NA	NA
VFH57005.1|400103_401378_-|tRNA	seryl-tRNA synthetase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	48.7	1.5e-91
>prophage 5
LR216023	Streptococcus pneumoniae strain 2245STDY5699475 genome assembly, chromosome: 1	2104636	414652	483091	2104636	protease,integrase,transposase,tRNA	Planktothrix_phage(22.22%)	60	480371:480430	484448:485247
VFH57088.1|414652_415087_+|protease	caax amino protease family protein	protease	NA	NA	NA	NA
VFH57095.1|415384_415807_-	transcription antitermination protein NusB	NA	NA	NA	NA	NA
VFH57100.1|415799_416189_-	general stress protein, Gls24 family	NA	NA	NA	NA	NA
VFH57105.1|416210_416771_-	Translation elongation factor P	NA	NA	NA	NA	NA
VFH57110.1|416899_418342_-|tRNA	glutamyl tRNA-Gln amidotransferase chain B	tRNA	NA	NA	NA	NA
VFH57116.1|418341_419808_-|tRNA	glutamyl-tRNA(Gln) amidotransferase, A subunit	tRNA	NA	NA	NA	NA
VFH57121.1|419807_420110_-|tRNA	aspartyl/glutamyl-tRNA amidotransferase subunit C	tRNA	NA	NA	NA	NA
VFH57124.1|420322_421867_+	regulator of gtfB	NA	A0A1B0RXH7	Streptococcus_phage	28.5	8.3e-36
VFH57129.1|422121_422319_+	glycosyl transferase, family 8	NA	NA	NA	NA	NA
VFH57133.1|422893_424297_-|transposase	IS1202 transposase	transposase	NA	NA	NA	NA
VFH57138.1|424501_424690_+	LSU ribosomal protein L28p	NA	NA	NA	NA	NA
VFH57143.1|424846_425212_+	alkaline shock protein	NA	NA	NA	NA	NA
VFH57148.1|425214_426882_+	kinase	NA	NA	NA	NA	NA
VFH57153.1|427082_428783_+	acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	32.2	1.2e-67
VFH57158.1|428775_429252_+	acetolactate synthase 3 regulatory subunit	NA	NA	NA	NA	NA
VFH57163.1|429317_430340_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
VFH57168.1|430446_430683_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFH57173.1|430920_431277_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
VFH57178.1|431326_432577_+	threonine dehydratase	NA	NA	NA	NA	NA
VFH57181.1|433447_433663_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFH57186.1|433771_434512_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	3.4e-27
VFH57191.1|434511_436077_-	ABC transporter-amino acid transport; amino acid-binding protein/permease protein	NA	NA	NA	NA	NA
VFH57197.1|436214_438104_+	Predicted membrane protein (DUF2207)	NA	NA	NA	NA	NA
VFH57202.1|438482_438953_-|transposase	degenerate transposase	transposase	A0A1B1P7S0	Bacillus_phage	39.5	5.1e-05
VFH57205.1|439150_439273_-|transposase	degenerate transposase	transposase	NA	NA	NA	NA
VFH57211.1|439528_440374_+	undecaprenol kinase	NA	NA	NA	NA	NA
VFH57216.1|440520_441582_-	DNA polymerase IV	NA	NA	NA	NA	NA
VFH57221.1|441976_444301_+	pyruvate formate-lyase	NA	A0A2P0VNR5	Tetraselmis_virus	32.9	2.3e-114
VFH57226.1|444667_445225_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFH57231.1|445217_445502_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFH57234.1|446113_446284_-|transposase	ISSpo8 transposase	transposase	NA	NA	NA	NA
VFH57239.1|447100_448324_-	ROK family protein	NA	NA	NA	NA	NA
VFH57244.1|448490_449813_+	PTS system cellobiose-specific IIC component	NA	NA	NA	NA	NA
VFH57249.1|449814_451701_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFH57254.1|451868_452213_+	lactose-specific phosphotransferase EIIA	NA	NA	NA	NA	NA
VFH57259.1|452222_453635_+	6-phospho-beta-galactosidase	NA	NA	NA	NA	NA
VFH57264.1|453703_455383_+	pts system lactose-specific transporter subunit EIIBC	NA	NA	NA	NA	NA
VFH57269.1|455508_456948_-	potassium uptake protein	NA	NA	NA	NA	NA
VFH57274.1|456951_458301_-	potassium uptake protein	NA	NA	NA	NA	NA
VFH57279.1|458489_459338_+	Molybdate/tungstate binding protein	NA	NA	NA	NA	NA
VFH57284.1|459352_459901_+	protein YdcD	NA	NA	NA	NA	NA
VFH57289.1|459907_460165_+	N-ethylammeline chlorohydrolase	NA	NA	NA	NA	NA
VFH57294.1|460266_461949_+	cobalt ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.4	7.7e-19
VFH57299.1|461933_462764_+	ABC transporter permease	NA	NA	NA	NA	NA
VFH57304.1|462956_463460_+	RNA methyltransferase	NA	NA	NA	NA	NA
VFH57309.1|463912_464476_+	riboflavin transporter	NA	NA	NA	NA	NA
VFH57313.1|464489_465116_+	phosphatase	NA	NA	NA	NA	NA
VFH57318.1|465143_465560_+	putative histone acetyltransferase	NA	NA	NA	NA	NA
VFH57323.1|465896_466484_+	DNA-dependent RNA Polymerase, delta subunit (RNAP delta factor)	NA	NA	NA	NA	NA
VFH57328.1|466873_468481_+	CTP synthetase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	47.2	1.8e-142
VFH57333.1|469039_470671_-	sodium-dependent phosphate transporter	NA	NA	NA	NA	NA
VFH57338.1|470963_475904_+	endo-beta-N-acetylglucosaminidase	NA	NA	NA	NA	NA
VFH57343.1|475993_477190_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
VFH57348.1|477325_477853_+	membrane protein	NA	NA	NA	NA	NA
VFH57354.1|477929_478286_+	transcriptional repressor of the glutamine synthetase gene	NA	NA	NA	NA	NA
VFH57356.1|478322_479669_+	glutamate-ammonia ligase	NA	NA	NA	NA	NA
VFH57361.1|479848_479998_+	Uncharacterised protein	NA	NA	NA	NA	NA
480371:480430	attL	GAAACATTATGGGAAGTTTGCTGATGGAAGCACTCAAGAAATTGATGTTCCTTATGATAT	NA	NA	NA	NA
VFH57366.1|480449_481730_+	type I restriction enzyme	NA	A0A1V0SLK8	Klosneuvirus	25.6	1.1e-12
VFH57371.1|481677_482223_-	type I restriction enzyme	NA	NA	NA	NA	NA
VFH57376.1|482293_483091_-|integrase	integrase/recombinase, phage integrase family	integrase	A0A0H4TI16	Erysipelothrix_phage	28.7	1.3e-21
484448:485247	attR	ATATCATAAGGAACATCAATTTCTTGAGTGCTTCCATCAGCAAACTTCCCATAATGTTTCCCATCATCACCACGAAATATCTCAGTTTCCTTTTTATCTCGTTTGATTTTTCCTTCACTGATAAGTTTTTCTTTTTCAGCTTTAATTCTCTTTAATAATTCACTTGCAGGTTCGTCATTGGGATTTTGCGGCACTAATTTCCCTTCCATCGCTCTTTGGAGAATACTTGCTTTAAGTTGTTCTGGTGTCATTATTTGTCCTCCAACAACTGCAAAATATCAGCTAATACATTATCAATCTTATGATTTAAAGTTGCTCTTTCCGCTTGATAATTCTGAATCAACTCAAAGGGATTTAAGATTTCCTCTTCCTCTTTTGGAAAGCCACACTGGTCTAAATTATAATTCAACTCAGCCAATTCACGAGGTGTAAATGATTTAGATTTGTAGAACTTACCTTCCAGAATCTCTTCACGATTTTCCCACCAGTCACGAACAGGATTGAAGTGTTCTGACTTCATCGGCTTAGTTTTCGAGAAATTTTTATGACCATCTGGCATATCTAAACGATAAAACCAAGTTTCTTCTGTTTTCTTTGTTTTATCAAAGAAAAGAATGTTCGTATGGATTCCTGTATACGGTGCAAAGACACTATGAGGCAACCTAATAATCGTATGCAAGTTGAACTCATCTACCAGTTTTTGTTTCAAGCGAGTTTTTACACCTTCACCAAATAGAAAACCATCAGGTAAAATAACTCCAACACGACCATTTTCTTTCAAACGATACATAATGACAGCC	NA	NA	NA	NA
>prophage 6
LR216023	Streptococcus pneumoniae strain 2245STDY5699475 genome assembly, chromosome: 1	2104636	505062	534869	2104636	protease,bacteriocin,transposase,tRNA	Bodo_saltans_virus(25.0%)	34	NA	NA
VFH57485.1|505062_505650_-|protease,bacteriocin	bacteriocin transporter C39 protease domain BlpA2	protease,bacteriocin	NA	NA	NA	NA
VFH57490.1|505931_506186_+	BlpM	NA	NA	NA	NA	NA
VFH57496.1|506201_506405_+	blpN protein	NA	NA	NA	NA	NA
VFH57501.1|507318_507483_+	putative immunity protein	NA	NA	NA	NA	NA
VFH57506.1|508511_508895_+	putative immunity protein BlpX	NA	NA	NA	NA	NA
VFH57513.1|508946_509636_+|protease	metal-dependent CAAX amino terminal membrane protease	protease	NA	NA	NA	NA
VFH57518.1|509677_509926_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
VFH57523.1|509955_510567_+|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
VFH57525.1|510727_511522_+	aminoglycoside phosphotransferase	NA	NA	NA	NA	NA
VFH57530.1|511518_512154_+|tRNA	tRNA (guanine-N(7)-)-methyltransferase	tRNA	NA	NA	NA	NA
VFH57535.1|512279_512759_+	SP14.3 protein	NA	NA	NA	NA	NA
VFH57540.1|512814_513939_+	transcription elongation factor NusA	NA	NA	NA	NA	NA
VFH57545.1|513960_514254_+	cytosolic protein YlxR	NA	NA	NA	NA	NA
VFH57550.1|514246_514546_+	L7A family ribosomal protein	NA	NA	NA	NA	NA
VFH57555.1|514562_517355_+	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	22.9	3.3e-19
VFH57561.1|517605_517956_+	ribosome-binding factor A	NA	NA	NA	NA	NA
VFH57566.1|518234_519014_+	ABC transporter ATPase	NA	NA	NA	NA	NA
VFH57571.1|519015_519198_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFH57576.1|519657_519891_+	Domain of uncharacterised function (DUF1858)	NA	NA	NA	NA	NA
VFH57581.1|519890_521225_+	hemerythrin HHE cation binding domain subfamily	NA	NA	NA	NA	NA
VFH57586.1|521234_521489_+	aldose 1-epimerase	NA	NA	NA	NA	NA
VFH57591.1|521584_521980_+	Helicase	NA	NA	NA	NA	NA
VFH57596.1|522467_522842_+	conserved protein/domain typically associated with flavoprotein oxygenase, Dim6/ntab family	NA	NA	NA	NA	NA
VFH57601.1|522828_523389_+	acetyltransferase, gnat family	NA	NA	NA	NA	NA
VFH57606.1|523957_526609_+|tRNA	valyl-tRNA synthetase	tRNA	A0A1V0S951	Catovirus	41.2	5.4e-152
VFH57612.1|526686_527943_+	modification methylase	NA	NA	NA	NA	NA
VFH57617.1|527951_530402_+	putative histidine kinase	NA	NA	NA	NA	NA
VFH57622.1|530406_532161_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFH57626.1|532184_532331_+	cytosine-specific methyltransferase	NA	NA	NA	NA	NA
VFH57630.1|532545_533349_+	Fic protein family	NA	NA	NA	NA	NA
VFH57635.1|533464_533953_-|transposase	IS3-Spn1 transposase, truncation	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	52.2	4.3e-39
VFH57640.1|534040_534298_-|transposase	IS3-Spn1 transposase	transposase	A0A1B1P773	Bacillus_phage	51.4	6.2e-13
VFH57646.1|534359_534464_-|transposase	transposase	transposase	NA	NA	NA	NA
VFH57651.1|534599_534869_-|transposase	transposase InsK for insertion sequence	transposase	NA	NA	NA	NA
>prophage 7
LR216023	Streptococcus pneumoniae strain 2245STDY5699475 genome assembly, chromosome: 1	2104636	601199	653813	2104636	bacteriocin,transposase,tRNA,protease,holin	Staphylococcus_prophage(25.0%)	43	NA	NA
VFH57969.1|601199_604841_+|protease	serine protease	protease	NA	NA	NA	NA
VFH57974.1|605159_607634_+|protease	serine protease	protease	NA	NA	NA	NA
VFH57979.1|610017_610494_+	PTS system transporter subunit IIA	NA	NA	NA	NA	NA
VFH57984.1|610531_610837_+	PTS system IIB component (galactitol/fructose specific)	NA	NA	NA	NA	NA
VFH57989.1|610884_612360_+	PTS system galactitol-specific family transporter subunit IIC	NA	NA	NA	NA	NA
VFH57995.1|612385_612577_+	chlorohydrolase	NA	NA	NA	NA	NA
VFH58000.1|612664_619366_+	beta-galactosidase	NA	NA	NA	NA	NA
VFH58006.1|619613_620237_-|transposase	transposase	transposase	Q9MBP7	Staphylococcus_prophage	40.0	2.3e-05
VFH58011.1|620224_620470_-|transposase	transposase	transposase	Q9MBP7	Staphylococcus_prophage	44.9	7.7e-13
VFH58016.1|620679_621039_-	integral membrane protein	NA	NA	NA	NA	NA
VFH58021.1|621130_621640_+	radical SAM family protein	NA	NA	NA	NA	NA
VFH58026.1|621640_622087_+	putative Fe-S oxidoreductase	NA	A0A2H4PQV5	Staphylococcus_phage	50.4	2.9e-34
VFH58031.1|622070_622628_+	SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	40.9	2.4e-33
VFH58037.1|622620_622875_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFH58043.1|622886_624941_+	Na+/H+ antiporter	NA	NA	NA	NA	NA
VFH58048.1|625119_625980_+	ribonuclease BN	NA	NA	NA	NA	NA
VFH58053.1|626190_626901_+	cytochrome c-type biogenesis protein	NA	NA	NA	NA	NA
VFH58060.1|626920_627487_+	thioredoxin	NA	NA	NA	NA	NA
VFH58065.1|627497_628610_+	peptide methionine sulfoxide reductase	NA	NA	NA	NA	NA
VFH58070.1|628877_629615_+	DNA-binding response regulator	NA	NA	NA	NA	NA
VFH58075.1|629611_631303_+	histidine kinase	NA	Q9EYF3	Enterobacteria_phage	32.7	9.4e-25
VFH58080.1|631418_631982_+	UPF0340 protein SSU05	NA	NA	NA	NA	NA
VFH58084.1|632003_637853_+	zinc metalloproteinase ZmpB	NA	NA	NA	NA	NA
VFH58089.1|637913_639635_+	chorismate binding enzyme para-aminobenzoate synthetase	NA	S4VT78	Pandoravirus	28.1	4.0e-31
VFH58094.1|639635_639824_+	putative alpha/beta superfamily hydrolase	NA	NA	NA	NA	NA
VFH58099.1|639820_640258_+	putative alpha/beta superfamily hydrolase	NA	NA	NA	NA	NA
VFH58104.1|640307_641306_+|holin	choline binding protein	holin	NA	NA	NA	NA
VFH58110.1|641432_642392_+	glucokinase	NA	NA	NA	NA	NA
VFH58115.1|642488_643328_+	thymidylate synthase	NA	U5J9N5	Bacillus_phage	54.6	1.8e-85
VFH58122.1|643375_643546_-	putative uncharacterized protein ORF 3	NA	NA	NA	NA	NA
VFH58127.1|643666_644551_+|tRNA	tRNA delta(2)-isopentenylpyrophosphate transferase	tRNA	NA	NA	NA	NA
VFH58132.1|644543_645782_+	GTP-binding protein HflX	NA	NA	NA	NA	NA
VFH58137.1|645774_646398_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
VFH58142.1|646412_647342_+	hydrolase	NA	NA	NA	NA	NA
VFH58147.1|647362_648118_+	dehydrogenase	NA	NA	NA	NA	NA
VFH58152.1|648171_649140_-	transcriptional regulator	NA	A0A2H4J8I9	uncultured_Caudovirales_phage	28.9	1.5e-06
VFH58157.1|649143_649413_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
VFH58162.1|649412_649793_+	rhodanese family protein	NA	NA	NA	NA	NA
VFH58167.1|649881_650052_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFH58172.1|650148_650874_-	ribosomal small subunit pseudouridine synthase A	NA	NA	NA	NA	NA
VFH58177.1|651035_652877_+	GTP-binding protein TypA	NA	NA	NA	NA	NA
VFH58182.1|652896_653151_+	membrane protein	NA	NA	NA	NA	NA
VFH58187.1|653465_653813_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
>prophage 8
LR216023	Streptococcus pneumoniae strain 2245STDY5699475 genome assembly, chromosome: 1	2104636	729888	812012	2104636	protease,transposase,tRNA	Streptococcus_phage(23.33%)	90	NA	NA
VFH58666.1|729888_730608_+|tRNA	tRNA (guanine-N(1)-)-methyltransferase	tRNA	NA	NA	NA	NA
VFH58673.1|730619_730958_+	ATP cone domain-containing protein	NA	NA	NA	NA	NA
VFH58680.1|731405_731621_+|tRNA	seryl-tRNA synthetase family protein	tRNA	NA	NA	NA	NA
VFH58686.1|731824_732361_-	biotin synthase	NA	NA	NA	NA	NA
VFH58692.1|732557_733904_-	glutathione reductase	NA	NA	NA	NA	NA
VFH58698.1|734189_735389_+	membrane-fusion protein	NA	NA	NA	NA	NA
VFH58704.1|735372_736074_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	43.9	4.0e-38
VFH58711.1|736075_737335_+	ABC transporter permeae	NA	NA	NA	NA	NA
VFH58717.1|737458_739456_+|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SEZ7	Hokovirus	31.4	2.3e-83
VFH58723.1|739505_739877_+	chlorohydrolase	NA	NA	NA	NA	NA
VFH58729.1|739966_740287_+	PadR family transcriptional regulator	NA	NA	NA	NA	NA
VFH58735.1|740290_741106_+	membrane protein	NA	NA	NA	NA	NA
VFH58741.1|741180_742107_+	aldo/keto reductase family oxidoreductase	NA	NA	NA	NA	NA
VFH58748.1|742202_742439_+|tRNA	methionine--tRNA ligase	tRNA	NA	NA	NA	NA
VFH58754.1|742431_743130_+	short chain dehydrogenase	NA	A0A0K0KVL6	Prochlorococcus_phage	30.9	9.6e-08
VFH58760.1|743140_743641_+	NTP pyrophosphohydrolase including oxidative damage repair enzymes	NA	NA	NA	NA	NA
VFH58766.1|743615_744488_+	PEP-utilizing enzyme family protein	NA	NA	NA	NA	NA
VFH58772.1|744462_744903_+	acetyltransferase	NA	NA	NA	NA	NA
VFH58778.1|745025_747572_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	27.2	1.3e-73
VFH58784.1|747680_748355_+	DNA-binding response regulator CiaR	NA	W8CYM9	Bacillus_phage	33.6	3.1e-27
VFH58790.1|748344_749679_+	histidine kinase	NA	Q8QNA2	Ectocarpus_siliculosus_virus	34.0	1.2e-06
VFH58796.1|749712_750000_-	membrane protein	NA	NA	NA	NA	NA
VFH58802.1|750139_751069_+	U32 family peptidase	NA	NA	NA	NA	NA
VFH58809.1|751268_753719_+	ATP-dependent helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	47.4	2.4e-199
VFH58814.1|753755_754979_+	RodA	NA	NA	NA	NA	NA
VFH58820.1|754989_755544_+	4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein	NA	A0A0N7KVR4	Yellowstone_lake_phycodnavirus	27.2	6.4e-07
VFH58826.1|755619_756192_+	phosphatase	NA	NA	NA	NA	NA
VFH58832.1|756206_758153_+	DNA gyrase subunit B	NA	G3M9Z3	Bacillus_virus	45.3	7.2e-146
VFH58837.1|758234_759962_+	septation ring formation regulator EzrA	NA	NA	NA	NA	NA
VFH58843.1|760354_760882_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	94.3	1.9e-88
VFH58849.1|760878_761400_-|transposase	degenerate transposase	transposase	A0A1S5SBP9	Streptococcus_phage	79.8	1.6e-63
VFH58855.1|761396_761660_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	90.8	1.1e-41
VFH58861.1|762413_762680_+|transposase	transposase	transposase	NA	NA	NA	NA
VFH58867.1|762821_763127_+|tRNA	glycyl-tRNA synthetase subunit alpha	tRNA	NA	NA	NA	NA
VFH58873.1|763233_763584_-|transposase	transposase, ISSmi4	transposase	NA	NA	NA	NA
VFH58880.1|763768_764038_+|transposase	degenerate transposase (Orf1)	transposase	NA	NA	NA	NA
VFH58887.1|764263_764536_+|transposase	IS3-Spn1 transposase	transposase	A0A1B1P773	Bacillus_phage	49.4	1.3e-13
VFH58894.1|764597_765062_+|transposase	IS3-Spn1 transposase, truncation	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	49.7	1.0e-34
VFH58900.1|765173_765473_-	Domain of uncharacterised function (DUF1827)	NA	NA	NA	NA	NA
VFH58906.1|765637_766060_-	mutT/nudix family protein	NA	NA	NA	NA	NA
VFH58913.1|767224_767428_-|protease	ATP-dependent Clp protease, ATP-binding subunit	protease	NA	NA	NA	NA
VFH58919.1|767420_769481_-|protease	ATP-dependent Clp protease, ATP-binding subunit	protease	K4FB40	Cronobacter_phage	39.7	1.4e-118
VFH58923.1|769709_769940_-	Protein of uncharacterised function (DUF1797)	NA	NA	NA	NA	NA
VFH58929.1|770129_770813_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
VFH58935.1|770812_771547_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	1.8e-36
VFH58940.1|771700_772558_+	FolD bifunctional protein; includes: methylenetetrahydrofolate dehydrogenase, methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	41.5	6.8e-40
VFH58950.1|772699_773572_+	carbohydrate kinase	NA	NA	NA	NA	NA
VFH58956.1|773853_774537_+	ribose-5-phosphate isomerase A	NA	NA	NA	NA	NA
VFH58963.1|774550_775762_+	phosphopentomutase	NA	NA	NA	NA	NA
VFH58969.1|775763_776306_+	phosphopentomutase	NA	NA	NA	NA	NA
VFH58974.1|776321_777131_+	purine nucleoside phosphorylase	NA	NA	NA	NA	NA
VFH58980.1|777594_778002_+	topology modulation protein	NA	NA	NA	NA	NA
VFH58986.1|778011_778587_+	thiol-activated cytolysin	NA	NA	NA	NA	NA
VFH58993.1|778611_779124_+	pneumolysin	NA	NA	NA	NA	NA
VFH58999.1|779781_780492_+	purine nucleoside phosphorylase	NA	NA	NA	NA	NA
VFH59005.1|780514_781039_-	topology modulation protein	NA	A0A097BYE2	Leuconostoc_phage	40.6	1.2e-26
VFH59011.1|781091_781328_-	putative 30S ribosomal protein S20	NA	NA	NA	NA	NA
VFH59017.1|781395_782316_-	pantothenate kinase	NA	NA	NA	NA	NA
VFH59023.1|782513_782828_+	membrane protein (pseudogene)	NA	NA	NA	NA	NA
VFH59029.1|783124_783715_+	16S RNA G1207 methylase RsmC	NA	NA	NA	NA	NA
VFH59035.1|783711_784989_+	thymidine phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	51.7	4.8e-114
VFH59041.1|785006_785669_+	deoxyribose-phosphate aldolase	NA	NA	NA	NA	NA
VFH59047.1|785655_786045_+	cytidine deaminase	NA	NA	NA	NA	NA
VFH59053.1|786135_787188_+	lipoprotein	NA	NA	NA	NA	NA
VFH59061.1|787331_788867_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	32.5	1.4e-19
VFH59064.1|788859_789918_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
VFH59070.1|789920_790877_+	ABC transporter, membrane-spanning permease	NA	NA	NA	NA	NA
VFH59076.1|790961_791477_+|transposase	IS3-Spn1 transposase	transposase	NA	NA	NA	NA
VFH59080.1|791476_792310_+|transposase	IS3-Spn1, transposase	transposase	A0A1B1P773	Bacillus_phage	48.5	1.6e-57
VFH59086.1|792352_792994_-	putative glycerol-3-phosphate acyltransferase PlsY	NA	NA	NA	NA	NA
VFH59094.1|793129_795073_+	topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	42.9	1.2e-124
VFH59100.1|795072_795180_+	N-6 DNA methylase	NA	NA	NA	NA	NA
VFH59105.1|795528_797964_+	topoisomerase IV subunit A, ParC	NA	G3M9Z5	Bacillus_virus	31.3	7.3e-95
VFH59112.1|798093_799116_+	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
VFH59118.1|799171_799876_+	extracellular oligopeptide-binding protein	NA	NA	NA	NA	NA
VFH59124.1|799940_800630_+	permease	NA	NA	NA	NA	NA
VFH59130.1|800626_801550_+	permease	NA	NA	NA	NA	NA
VFH59136.1|801564_802209_+	pyroglutamyl-peptidase I	NA	NA	NA	NA	NA
VFH59143.1|802376_802607_+	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
VFH59149.1|802979_804182_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
VFH59155.1|804266_804794_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	94.3	1.9e-88
VFH59161.1|804790_805312_-|transposase	degenerate transposase	transposase	A0A1S5SBP9	Streptococcus_phage	79.8	1.6e-63
VFH59167.1|805308_805572_-|transposase	transposase-like protein	transposase	A0A1S5SBP9	Streptococcus_phage	88.5	3.2e-41
VFH59173.1|805763_806261_+	GAF domain-containing protein	NA	NA	NA	NA	NA
VFH59179.1|806260_807916_+	DNA polymerase III subunits gamma and tau	NA	A0A1U9WR94	Streptococcus_virus	41.9	1.1e-46
VFH59183.1|807943_808138_+	membrane protein	NA	NA	NA	NA	NA
VFH59185.1|808287_809058_+	FeS assembly ATPase SufC	NA	A0A2R8FG22	Brazilian_cedratvirus	28.5	2.5e-09
VFH59191.1|809085_810348_+	FeS assembly protein SufD	NA	NA	NA	NA	NA
VFH59198.1|810358_811585_+	class-V aminotransferase	NA	Q2XUY6	environmental_halophage	44.8	1.9e-104
VFH59204.1|811571_812012_+	nifU family protein	NA	A0A2P1CJL8	Mycobacterium_phage	39.0	1.6e-13
>prophage 9
LR216023	Streptococcus pneumoniae strain 2245STDY5699475 genome assembly, chromosome: 1	2104636	851134	886555	2104636	protease,holin,transposase	Streptococcus_phage(57.14%)	39	NA	NA
VFH59396.1|851134_851518_-|transposase	transposase-like protein, IS1381 ISSpn7	transposase	NA	NA	NA	NA
VFH59398.1|851660_851972_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFH59404.1|851975_852692_+	alpha/beta hydrolase related protein	NA	NA	NA	NA	NA
VFH59410.1|852821_853637_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
VFH59416.1|853633_854539_-	membrnae protein	NA	NA	NA	NA	NA
VFH59422.1|854539_854671_-	putative type II restriction endonuclease DpnI	NA	NA	NA	NA	NA
VFH59428.1|854997_857085_+	S1 RNA-binding domain-containing protein	NA	NA	NA	NA	NA
VFH59434.1|857071_857521_+	SprT family protein	NA	NA	NA	NA	NA
VFH59440.1|857579_857852_+	PspC domain-containing protein	NA	NA	NA	NA	NA
VFH59446.1|858205_858397_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFH59452.1|858699_858810_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFH59459.1|858824_859583_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.3	7.7e-27
VFH59465.1|859584_861573_+	ABC transporter, membrane-spanning protein	NA	NA	NA	NA	NA
VFH59471.1|861614_862205_-	integral membrane protein	NA	NA	NA	NA	NA
VFH59477.1|862230_863280_-|transposase	IS1239 transposase	transposase	H7BUM7	unidentified_phage	34.2	3.6e-35
VFH59483.1|863986_865462_+	ornithine decarboxylase family protein	NA	NA	NA	NA	NA
VFH59489.1|866398_867259_+	spermidine synthase	NA	NA	NA	NA	NA
VFH59496.1|867255_868515_+	dehydrogenase family protein, saccharopine dehydrogenase	NA	NA	NA	NA	NA
VFH59502.1|868514_869642_+	LysA-like decarboxylase, diaminopimelate decarboxylase putative	NA	NA	NA	NA	NA
VFH59508.1|869638_870724_+	agmatine deiminase	NA	M1HES8	Acanthocystis_turfacea_Chlorella_virus	47.5	1.6e-89
VFH59514.1|870733_871609_+	carbon-nitrogen hydrolase family protein	NA	M1H5W0	Paramecium_bursaria_Chlorella_virus	50.0	1.1e-77
VFH59523.1|871789_872599_-	Cof family protein	NA	NA	NA	NA	NA
VFH59529.1|872871_873093_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFH59535.1|873146_873818_+|protease	caax amino protease family protein	protease	NA	NA	NA	NA
VFH59537.1|874058_874967_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	27.7	3.1e-06
VFH59539.1|874963_875425_+	lipoprotein signal peptidase, signal peptidase type II	NA	NA	NA	NA	NA
VFH59545.1|875414_876302_+	23S rluA family pseudouridine synthase	NA	NA	NA	NA	NA
VFH59551.1|876304_878188_+|holin	choline binding protein E CbpE	holin	Q332B9	Clostridium_botulinum_C_phage	22.9	1.2e-09
VFH59557.1|878288_879398_+	gamma-glutamyl kinase	NA	A0A1X9I5D0	Streptococcus_phage	58.4	8.4e-115
VFH59563.1|879407_880670_+	gamma-glutamyl phosphate reductase	NA	A0A1X9I5D4	Streptococcus_phage	64.5	2.5e-139
VFH59570.1|880673_881471_+	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	50.2	1.8e-58
VFH59576.1|881586_882225_+	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	68.1	9.8e-76
VFH59582.1|882221_883112_+	DNA polymerase III, delta' subunit	NA	M1NSC1	Streptococcus_phage	51.4	1.4e-72
VFH59589.1|883151_883469_+	DNA replication intiation control protein YabA	NA	M1PFV3	Streptococcus_phage	60.0	2.9e-28
VFH59595.1|883471_884341_+	tetrapyrrole methylase	NA	M1PLC5	Streptococcus_phage	75.7	2.3e-115
VFH59601.1|884567_885086_+	DUF1706 domain-containing protein	NA	NA	NA	NA	NA
VFH59607.1|885194_885842_+	phage protein	NA	A0A2P0VK56	Streptococcus_phage	33.7	7.0e-13
VFH59613.1|885830_886220_-|transposase	transposase	transposase	NA	NA	NA	NA
VFH59619.1|886375_886555_-|transposase	transposase-like protein, IS1381 ISSpn7	transposase	NA	NA	NA	NA
>prophage 10
LR216023	Streptococcus pneumoniae strain 2245STDY5699475 genome assembly, chromosome: 1	2104636	952805	1036545	2104636	holin,transposase,tRNA	Streptococcus_phage(21.05%)	88	NA	NA
VFH60014.1|952805_954179_-|tRNA	tRNA modification GTPase TrmE	tRNA	NA	NA	NA	NA
VFH60020.1|954314_954497_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
VFH60026.1|954619_955210_+	thymidine kinase	NA	A0A0K1Y4R8	Klebsiella_phage	48.4	1.4e-47
VFH60032.1|955206_956286_+	peptide chain release factor 1	NA	NA	NA	NA	NA
VFH60038.1|956285_957125_+	protein-(glutamine-N5) methyltransferase, release factor-specific	NA	NA	NA	NA	NA
VFH60044.1|957108_957711_+	Sua5/YciO/YrdC family protein	NA	NA	NA	NA	NA
VFH60047.1|957712_958144_+	acetyltransferase	NA	NA	NA	NA	NA
VFH60053.1|958205_959462_+	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	53.1	3.3e-99
VFH60059.1|959469_960444_+	Pseudouridylate synthase, 23S RNA-specific	NA	NA	NA	NA	NA
VFH60065.1|960443_961058_+	pneumococcal vaccine antigen A	NA	A0A1W6JSC2	Bacillus_phage	42.7	5.8e-25
VFH60070.1|961131_962106_+	extracellular protein	NA	NA	NA	NA	NA
VFH60076.1|962179_963811_+	23S rRNA (uracil-5-)-methyltransferase RumA	NA	A0A1X9I6F4	Streptococcus_phage	72.4	3.6e-191
VFH60082.1|964637_964751_+	putative transcriptional regulator	NA	NA	NA	NA	NA
VFH60088.1|965143_966169_+	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
VFH60091.1|966158_967166_+	iron-siderophore binding lipoprotein	NA	A0A2H4IY97	uncultured_Caudovirales_phage	26.4	7.6e-22
VFH60097.1|967165_968173_+	iron ABC transporter membrane-spanning permease	NA	NA	NA	NA	NA
VFH60103.1|968172_968967_+	ferric enterobactin transport ATP-binding protein FepC	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	28.0	1.9e-15
VFH60109.1|969644_970127_+	MobA/MobL family protein	NA	NA	NA	NA	NA
VFH60115.1|970200_970374_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFH60121.1|970559_971087_+	Protein of uncharacterised function (DUF3801)	NA	NA	NA	NA	NA
VFH60127.1|971213_971729_+	phage-associated protein	NA	A0A1S5SAV1	Streptococcus_phage	46.4	5.7e-26
VFH60130.1|972626_972788_+	site-specific DNA recombinase	NA	NA	NA	NA	NA
VFH60136.1|972879_974430_+	site-specific DNA recombinase	NA	A0A2H4J3Q1	uncultured_Caudovirales_phage	24.6	3.4e-29
VFH60142.1|974697_975264_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFH60149.1|975585_975774_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFH60155.1|975835_976594_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFH60161.1|976651_977506_+	hydrolase	NA	NA	NA	NA	NA
VFH60167.1|977617_978502_+	sphingosine kinase	NA	NA	NA	NA	NA
VFH60174.1|978835_979897_+	neopullulanase	NA	NA	NA	NA	NA
VFH60182.1|979903_980032_+	neopullulanase	NA	NA	NA	NA	NA
VFH60188.1|980074_980404_+	neopullulanase	NA	NA	NA	NA	NA
VFH60195.1|980678_981107_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFH60201.1|981578_982055_+	transcriptional regulator	NA	NA	NA	NA	NA
VFH60207.1|982054_982813_+	signal recognition particle GTPase	NA	NA	NA	NA	NA
VFH60211.1|983210_984107_-	tyrosine recombinase	NA	A0A0K2CP59	Brevibacillus_phage	27.9	4.1e-27
VFH60218.1|984436_986206_+	Lmo0466 protein	NA	NA	NA	NA	NA
VFH60224.1|986234_986519_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFH60234.1|986777_988091_+|holin	choline binding protein G	holin	NA	NA	NA	NA
VFH60240.1|988109_989090_+|holin	choline binding protein J	holin	NA	NA	NA	NA
VFH60246.1|989255_989426_-	hypothetical cytosolic protein	NA	NA	NA	NA	NA
VFH60253.1|989877_991467_+	putative ATP-dependentend nuclease of the OLD family	NA	NA	NA	NA	NA
VFH60259.1|991448_992495_+	Viral (Superfamily 1) RNA helicase	NA	NA	NA	NA	NA
VFH60265.1|992520_992862_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFH60271.1|993344_993653_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFH60277.1|993760_994033_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFH60284.1|994468_994825_+	Tn5252, Orf 10 protein	NA	NA	NA	NA	NA
VFH60290.1|994837_995203_+	Tn5252, Orf 9 protein	NA	NA	NA	NA	NA
VFH60298.1|995189_997040_+	Tn5252, relaxase	NA	NA	NA	NA	NA
VFH60303.1|997304_997973_+|transposase	degenerate transposase	transposase	NA	NA	NA	NA
VFH60309.1|998074_998260_+|transposase	degenerate transposase	transposase	NA	NA	NA	NA
VFH60318.1|998362_998728_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFH60324.1|999420_1000374_-|transposase	IS1239 transposase	transposase	H7BWC8	unidentified_phage	34.9	8.1e-34
VFH60330.1|1000732_1001110_-|transposase	transposase (IS4 family)	transposase	NA	NA	NA	NA
VFH60336.1|1001121_1001547_-|transposase	transposase	transposase	NA	NA	NA	NA
VFH60342.1|1001630_1002344_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFH60348.1|1002340_1002976_+	chloramphenicol acetyltransferase	NA	NA	NA	NA	NA
VFH60353.1|1003043_1004681_+|tRNA	methionyl-tRNA synthetase	tRNA	A0A167RM67	Powai_lake_megavirus	32.0	2.5e-75
VFH60359.1|1004781_1005549_+	Protein tyrosine phosphatase	NA	NA	NA	NA	NA
VFH60365.1|1006571_1007558_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.9	8.8e-15
VFH60371.1|1007559_1008096_+	daunorubicin resistance transmembrane protein	NA	NA	NA	NA	NA
VFH60378.1|1008380_1009166_+	ABC transporter permease	NA	NA	NA	NA	NA
VFH60384.1|1009798_1010119_-|transposase	degenerate transposase	transposase	A0A1X9I5Z0	Streptococcus_phage	74.4	8.2e-23
VFH60386.1|1010602_1010818_-|transposase	degenerate transposase	transposase	A0A1X9I5Z0	Streptococcus_phage	82.2	5.2e-13
VFH60392.1|1011241_1011445_+	Cro/CI family transcriptional regulator	NA	A0A139ZPI6	Marinitoga_camini_virus	39.3	6.4e-05
VFH60396.1|1011691_1011841_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFH60403.1|1011894_1013688_+|tRNA	methionyl-tRNA synthetase	tRNA	A0A2I4R675	Erysipelothrix_phage	51.8	4.0e-151
VFH60409.1|1013792_1014380_+	peptidase	NA	NA	NA	NA	NA
VFH60415.1|1015013_1015208_+|transposase	transposase-like protein, IS1381 ISSpn7	transposase	NA	NA	NA	NA
VFH60421.1|1015470_1016700_+	cell division protein FtsW	NA	NA	NA	NA	NA
VFH60427.1|1016719_1019416_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
VFH60433.1|1019828_1020833_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
VFH60439.1|1020901_1021768_+	ABC transporter, membrane-spanning permease	NA	NA	NA	NA	NA
VFH60445.1|1021764_1022523_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	27.3	2.8e-13
VFH60451.1|1022612_1024373_+	DNA primase	NA	A0A1S5RH72	Helicobacter_phage	28.7	1.3e-45
VFH60457.1|1024375_1025485_+	RNA polymerase sigma factor RpoD	NA	F4YCU2	Synechococcus_phage	38.5	2.0e-36
VFH60463.1|1025498_1025828_+	metal-sulfur cluster biosynthesis protein	NA	NA	NA	NA	NA
VFH60466.1|1025942_1026986_+	glycosyl transferase CpoA	NA	NA	NA	NA	NA
VFH60473.1|1027001_1028327_+	glycosyltransferase, group 1 family protein	NA	NA	NA	NA	NA
VFH60479.1|1028357_1028534_+	putative stress-responsive transcriptional regulator	NA	NA	NA	NA	NA
VFH60486.1|1028592_1028727_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFH60492.1|1028790_1030101_+	GTP-binding protein	NA	NA	NA	NA	NA
VFH60498.1|1030110_1030269_+	putative extracellular protein	NA	NA	NA	NA	NA
VFH60504.1|1031355_1032615_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2	NA	NA	NA	NA	NA
VFH60510.1|1032630_1033182_+	acetyltransferase	NA	NA	NA	NA	NA
VFH60516.1|1033174_1034452_+	DRTGG domain/CBS domain-containing protein	NA	NA	NA	NA	NA
VFH60521.1|1034467_1035328_+	methionyl aminopeptidase	NA	NA	NA	NA	NA
VFH60527.1|1035426_1035906_+|transposase	transposase	transposase	NA	NA	NA	NA
VFH60533.1|1036041_1036545_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 11
LR216023	Streptococcus pneumoniae strain 2245STDY5699475 genome assembly, chromosome: 1	2104636	1076788	1120915	2104636	protease,transposase	Bacillus_virus(20.0%)	28	NA	NA
VFH60766.1|1076788_1077118_-|transposase	IS630-Spn1, transposase Orf1	transposase	NA	NA	NA	NA
VFH60772.1|1077643_1080919_+	exonuclease RexB	NA	NA	NA	NA	NA
VFH60778.1|1080915_1084566_+	ATP-dependent exoDNAse subunit beta	NA	G3MA40	Bacillus_virus	25.3	2.0e-19
VFH60784.1|1084735_1085914_+	Uncharacterised protein	NA	NA	NA	NA	NA
VFH60790.1|1086122_1092071_+|protease	immunoglobulin A1 protease	protease	NA	NA	NA	NA
VFH60796.1|1092114_1097517_+|protease	zinc metalloprotease ZmpD	protease	NA	NA	NA	NA
VFH60802.1|1097683_1098400_+|transposase	transposase-like protein, IS1380 ISSpn5	transposase	A0A1X9I6F6	Streptococcus_phage	38.6	8.8e-41
VFH60809.1|1098484_1099030_+|transposase	IS1380-Spn1 transposase	transposase	NA	NA	NA	NA
VFH60815.1|1099525_1100377_+	GTP-binding protein	NA	NA	NA	NA	NA
VFH60820.1|1100363_1101143_+	ribonuclease HII	NA	E3T5H8	Cafeteria_roenbergensis_virus	42.0	2.8e-24
VFH60826.1|1101158_1102715_+	voltage-gated chloride channel family protein	NA	NA	NA	NA	NA
VFH60832.1|1103268_1104339_+	tyrosine recombinase	NA	A0A1B1IQT7	uncultured_Mediterranean_phage	30.6	2.3e-05
VFH60838.1|1104409_1105399_-	lipoate protein ligase A	NA	NA	NA	NA	NA
VFH60844.1|1105462_1107166_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
VFH60851.1|1107211_1108255_-	dihydrolipoamide acetyltransferase	NA	NA	NA	NA	NA
VFH60857.1|1108472_1109465_-	putative acetoin dehydrogenase	NA	NA	NA	NA	NA
VFH60863.1|1109480_1110449_-	acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha	NA	NA	NA	NA	NA
VFH60869.1|1110602_1111964_-	mate efflux family protein	NA	NA	NA	NA	NA
VFH60875.1|1111974_1112235_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFH60881.1|1112248_1113517_-	dihydroorotase	NA	NA	NA	NA	NA
VFH60887.1|1113529_1113994_-	Mutator mutT protein	NA	NA	NA	NA	NA
VFH60893.1|1114003_1114657_-	uracil-DNA glycosylase	NA	A0A286RUF9	Beluga_whale_alphaherpesvirus	38.8	9.5e-34
VFH60899.1|1114792_1115395_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFH60905.1|1115452_1116166_-	HAD superfamily hydrolase	NA	NA	NA	NA	NA
VFH60911.1|1116624_1116999_-	sugar phosphotransferase system (PTS), fructose family, IIA component	NA	NA	NA	NA	NA
VFH60917.1|1117417_1119898_-	pneumococcal histidine triad protein D	NA	NA	NA	NA	NA
VFH60922.1|1120100_1120526_+|transposase	transposase	transposase	NA	NA	NA	NA
VFH60928.1|1120537_1120915_+|transposase	transposase (IS4 family)	transposase	NA	NA	NA	NA
>prophage 12
LR216023	Streptococcus pneumoniae strain 2245STDY5699475 genome assembly, chromosome: 1	2104636	1151509	1211134	2104636	protease,bacteriocin,holin,tRNA	Bacillus_phage(20.0%)	60	NA	NA
VFH61113.1|1151509_1151812_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
VFH61119.1|1151808_1151904_-|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
VFH61122.1|1152052_1152931_-|tRNA	tRNA pseudouridine synthase B	tRNA	NA	NA	NA	NA
VFH61128.1|1152940_1154215_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VFH61135.1|1154310_1154904_-	O-acetylhomoserine sulfhydrylase	NA	NA	NA	NA	NA
VFH61142.1|1154904_1155426_-	O-acetylhomoserine (thiol)-lyase	NA	NA	NA	NA	NA
VFH61148.1|1155447_1155570_-	O-acetylhomoserine sulfhydrylase	NA	NA	NA	NA	NA
VFH61155.1|1155717_1156515_-	formate/nitrate transporter	NA	NA	NA	NA	NA
VFH61162.1|1156758_1157502_-	sortase SrtA	NA	NA	NA	NA	NA
VFH61168.1|1157501_1159970_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	35.5	3.5e-105
VFH61174.1|1160163_1161150_+	L-lactate dehydrogenase 1	NA	NA	NA	NA	NA
VFH61179.1|1161486_1162182_-	ion transporter	NA	A0A1B0Y2S3	Lactobacillus_phage	43.6	9.2e-19
VFH61184.1|1162228_1162492_-	cytotoxic translational repressor of toxin-antitoxin stability system	NA	NA	NA	NA	NA
VFH61191.1|1162484_1162727_-	toxin-antitoxin system, antitoxin component, ribbon-helix-helix fold protein	NA	NA	NA	NA	NA
VFH61198.1|1162817_1163627_-	metallo-beta-lactamase superfamily protein	NA	A0A0C5AFC1	Paenibacillus_phage	39.0	1.8e-34
VFH61202.1|1163628_1164978_-	histidine kinase	NA	W8CYF6	Bacillus_phage	34.6	1.8e-34
VFH61211.1|1164970_1165675_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	39.8	2.8e-39
VFH61219.1|1165730_1166906_-	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
VFH61227.1|1167233_1168904_-	formate-tetrahydrofolate ligase	NA	NA	NA	NA	NA
VFH61234.1|1169133_1169823_+	phosphopantothenate--cysteine ligase	NA	NA	NA	NA	NA
VFH61236.1|1169834_1170386_+	flavoprotein involved in panthothenate metabolism	NA	A0A068EHP1	Penguinpox_virus	37.2	2.3e-25
VFH61243.1|1170369_1170933_+	membrane protein	NA	NA	NA	NA	NA
VFH61251.1|1171214_1171742_+	membrane protein	NA	NA	NA	NA	NA
VFH61256.1|1171753_1172269_+	transcriptional regulator	NA	NA	NA	NA	NA
VFH61263.1|1172265_1172733_-	MutT/nudix family protein	NA	NA	NA	NA	NA
VFH61270.1|1172785_1173295_-	acetyltransferase, gnat family	NA	NA	NA	NA	NA
VFH61279.1|1173260_1173824_-	acetyltransferase	NA	NA	NA	NA	NA
VFH61286.1|1173833_1175822_-	excinuclease ABC subunit B	NA	NA	NA	NA	NA
VFH61293.1|1175898_1176852_-|protease	caax amino protease family protein	protease	NA	NA	NA	NA
VFH61301.1|1177024_1179190_+	glutamine ABC transporter permease	NA	NA	NA	NA	NA
VFH61309.1|1179189_1179930_+	phosphate ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	27.5	4.9e-18
VFH61318.1|1180078_1181566_+	glucose-6-phosphate 1-dehydrogenase	NA	H6WFS4	Cyanophage	32.6	9.3e-69
VFH61326.1|1181609_1182887_-	cell division protein FtsY	NA	NA	NA	NA	NA
VFH61334.1|1182890_1183709_-	Cof family protein	NA	NA	NA	NA	NA
VFH61341.1|1183708_1184503_-	Cof family protein	NA	NA	NA	NA	NA
VFH61349.1|1184499_1188039_-	chromosome condensation and segregation SMC protein	NA	NA	NA	NA	NA
VFH61357.1|1188029_1188728_-	ribonuclease III	NA	J2YAN1	Acanthamoeba_polyphaga_lentillevirus	33.8	3.9e-25
VFH61365.1|1189048_1190035_-	GMP reductase	NA	G3MBI2	Bacillus_virus	72.2	1.8e-137
VFH61373.1|1190209_1191553_-	McrBC 5-methylcytosine restriction system component	NA	NA	NA	NA	NA
VFH61381.1|1191512_1193444_-	endonuclease	NA	K4I1H4	Acidithiobacillus_phage	33.7	1.8e-16
VFH61389.1|1193768_1193885_-	translation factor	NA	NA	NA	NA	NA
VFH61395.1|1194500_1194860_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
VFH61403.1|1194863_1195133_-	membrane protein	NA	NA	NA	NA	NA
VFH61411.1|1195129_1196167_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
VFH61419.1|1196178_1196598_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
VFH61427.1|1196640_1196922_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
VFH61435.1|1196945_1197113_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
VFH61443.1|1197293_1197950_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VFH61448.1|1197993_1198626_-	copper homeostasis protein	NA	NA	NA	NA	NA
VFH61456.1|1198718_1199078_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
VFH61464.1|1199183_1201271_-	DNA topoisomerase I	NA	A0A1V0SCS0	Indivirus	37.5	1.5e-104
VFH61472.1|1201437_1202481_-	membrane protein	NA	NA	NA	NA	NA
VFH61480.1|1203364_1204213_-	DNA processing protein DprA	NA	S6BFL3	Thermus_phage	39.5	4.2e-34
VFH61488.1|1204308_1204998_-|holin	CTP:phosphocholine cytidylyltransferase	holin	A0A127AW70	Bacillus_phage	45.0	3.4e-05
VFH61496.1|1205009_1205888_-	drug/metabolite transporter (DMT) superfamily permease	NA	NA	NA	NA	NA
VFH61504.1|1205877_1206747_-|holin	choline kinase	holin	NA	NA	NA	NA
VFH61511.1|1206763_1207786_-	zinc-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
VFH61519.1|1207790_1208498_-	cytidylyltransferase	NA	NA	NA	NA	NA
VFH61527.1|1208833_1210321_+	teichoic acid subunit flippase	NA	NA	NA	NA	NA
VFH61535.1|1210330_1211134_+|holin	phosphorylcholine transferase LicD1	holin	A0A1V0SD50	Indivirus	27.1	4.0e-10
>prophage 13
LR216023	Streptococcus pneumoniae strain 2245STDY5699475 genome assembly, chromosome: 1	2104636	1325878	1367087	2104636	transposase,tRNA	Streptococcus_phage(21.43%)	49	NA	NA
VFH62369.1|1325878_1326121_-|transposase	transposase	transposase	NA	NA	NA	NA
VFH62376.1|1326720_1327188_-|transposase	transposase	transposase	NA	NA	NA	NA
VFH62383.1|1327568_1327805_-|transposase	transposase	transposase	NA	NA	NA	NA
VFH62391.1|1327785_1327971_-	IS66 family Orf1	NA	NA	NA	NA	NA
VFH62398.1|1328274_1329837_-	GMP synthase	NA	A0A1V0SH76	Hokovirus	32.8	1.4e-19
VFH62405.1|1329978_1330677_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
VFH62413.1|1330719_1331616_-	membrane protein	NA	NA	NA	NA	NA
VFH62420.1|1331624_1332560_-	beta-lactamase	NA	NA	NA	NA	NA
VFH62427.1|1332556_1333282_-	cppA protein	NA	NA	NA	NA	NA
VFH62434.1|1333365_1334001_-	lysophospholipase l1-like esterase	NA	A0A2K9L661	Tupanvirus	28.2	7.4e-07
VFH62441.1|1334002_1334830_-	hydrolase	NA	NA	NA	NA	NA
VFH62452.1|1335038_1335152_-	enzyme of poly-gamma-glutamate biosynthesis	NA	NA	NA	NA	NA
VFH62460.1|1335188_1335905_-	CapA domain-containing protein	NA	A0A0N9SJ77	Staphylococcus_phage	31.6	1.2e-26
VFH62467.1|1336416_1337028_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.4	4.9e-16
VFH62474.1|1337072_1337801_+	TrmH family RNA methyltransferase group 3	NA	NA	NA	NA	NA
VFH62481.1|1337839_1338751_-	thioredoxin reductase	NA	G3MA85	Bacillus_virus	51.5	1.0e-89
VFH62488.1|1338816_1339041_-	membrane associated protein	NA	NA	NA	NA	NA
VFH62492.1|1339118_1339862_-	aspartate/glutamate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.5	4.7e-29
VFH62496.1|1339861_1340662_-	aspartate/glutamate ABC transporter permease	NA	NA	NA	NA	NA
VFH62503.1|1340819_1341176_-	ArsC family protein	NA	M1PLC0	Streptococcus_phage	57.3	1.2e-33
VFH62511.1|1341188_1341701_-	O6-methylguanine-DNA methyltransferase	NA	M1PFU9	Streptococcus_phage	55.6	1.3e-46
VFH62518.1|1341700_1342195_-	acetyltransferase, GNAT family protein	NA	M1PSC3	Streptococcus_phage	52.8	2.9e-43
VFH62525.1|1342329_1342776_+	BS_ykrK family protein	NA	NA	NA	NA	NA
VFH62532.1|1342772_1343420_+	hlyIII superfamily protein	NA	NA	NA	NA	NA
VFH62539.1|1343440_1344022_-	glutamine amidotransferase subunit PdxT	NA	NA	NA	NA	NA
VFH62544.1|1344022_1344898_-	pyridoxal biosynthesis lyase PdxS	NA	NA	NA	NA	NA
VFH62550.1|1345049_1346429_-	NADH oxidase	NA	NA	NA	NA	NA
VFH62558.1|1346722_1347646_+	thiamine biosynthesis lipoprotein	NA	NA	NA	NA	NA
VFH62566.1|1347705_1348311_+	NADPH-dependent FMN reductase domain-containing protein	NA	A0A2P0ZL77	Lactobacillus_phage	54.2	7.7e-54
VFH62574.1|1348329_1349574_+	flavin reductase	NA	A0A2P0ZL82	Lactobacillus_phage	52.7	1.7e-55
VFH62581.1|1349796_1350054_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VFH62588.1|1350095_1352132_-|tRNA	glycyl-tRNA synthetase beta subunit	tRNA	NA	NA	NA	NA
VFH62596.1|1352391_1353309_-|tRNA	glycyl-tRNA synthetase alpha subunit	tRNA	NA	NA	NA	NA
VFH62598.1|1353674_1354001_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFH62605.1|1353967_1354252_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFH62612.1|1354524_1355367_-	2,5-diketo-D-gluconic acid reductase A	NA	A0A2H4PQR8	Staphylococcus_phage	40.2	1.7e-51
VFH62619.1|1355480_1356923_-	peptidoglycan N-acetylglucosamine deacetylase A	NA	NA	NA	NA	NA
VFH62626.1|1357106_1357583_-	ribose-phosphate pyrophosphokinase	NA	NA	NA	NA	NA
VFH62633.1|1357736_1358714_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
VFH62640.1|1358710_1359793_+	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	31.3	1.8e-37
VFH62647.1|1359951_1360365_-|transposase	transposase	transposase	NA	NA	NA	NA
VFH62652.1|1360396_1360903_-|transposase	transposase	transposase	NA	NA	NA	NA
VFH62659.1|1361286_1362483_-	elongation factor Tu	NA	A0A076FFS6	Aureococcus_anophage	29.6	7.3e-32
VFH62666.1|1363405_1364275_-	glycerol facilitator-aquaporin	NA	NA	NA	NA	NA
VFH62674.1|1364498_1364660_-	cell wall surface anchor family protein	NA	NA	NA	NA	NA
VFH62681.1|1364656_1365019_-	cell wall surface anchor family protein	NA	NA	NA	NA	NA
VFH62688.1|1364976_1366083_-	putative sortase-sorted surface anchored protein (pseudogene)	NA	NA	NA	NA	NA
VFH62695.1|1366193_1366448_-	Uncharacterised protein	NA	NA	NA	NA	NA
VFH62699.1|1366787_1367087_-|transposase	degenerate transposase	transposase	NA	NA	NA	NA
>prophage 14
LR216023	Streptococcus pneumoniae strain 2245STDY5699475 genome assembly, chromosome: 1	2104636	1431384	1438138	2104636	protease	Streptococcus_phage(50.0%)	9	NA	NA
VFH63179.1|1431384_1432353_+	thioredoxin reductase	NA	Q9JRK7	Streptococcus_phage	100.0	2.8e-66
VFH63186.1|1432386_1433298_-	putative sporulation transcription regulator whiA	NA	Q7AWZ3	Streptococcus_phage	100.0	2.3e-155
VFH63193.1|1433294_1434272_-	transporter	NA	A1IMD5	Streptococcus_phage	99.7	4.4e-184
VFH63202.1|1434268_1435159_-	P-loop-containing kinase	NA	A0A0R8VB27	Thermobifida_phage	29.8	6.7e-06
VFH63209.1|1435210_1435591_-	endoribonuclease L-PSP	NA	NA	NA	NA	NA
VFH63215.1|1435601_1436189_-	ribosome biogenesis GTP-binding protein YsxC	NA	NA	NA	NA	NA
VFH63222.1|1436197_1437430_-|protease	ATP-dependent Clp protease, ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	59.0	4.2e-131
VFH63229.1|1437461_1437632_-	membrane associated protein	NA	NA	NA	NA	NA
VFH63236.1|1437631_1438138_-	dihydrofolate reductase	NA	G3MBI7	Bacillus_virus	43.1	2.3e-27
>prophage 15
LR216023	Streptococcus pneumoniae strain 2245STDY5699475 genome assembly, chromosome: 1	2104636	1720215	1776677	2104636	integrase,holin,transposase	Streptococcus_phage(40.0%)	53	1731096:1731123	1753712:1753739
VFH65112.1|1720215_1721736_-|holin	choline transporter	holin	NA	NA	NA	NA
VFH65119.1|1721728_1722457_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	41.2	9.0e-33
VFH65130.1|1722471_1723236_-	lipoprotein	NA	NA	NA	NA	NA
VFH65137.1|1723239_1723683_-	transcriptional regulator, MarR family	NA	NA	NA	NA	NA
VFH65144.1|1724364_1724661_-	Enterocin A Immunity	NA	NA	NA	NA	NA
VFH65151.1|1724682_1725747_-	glutamyl aminopeptidase	NA	NA	NA	NA	NA
VFH65158.1|1726147_1726849_+	putative UDP-glucose 4-epimerase	NA	A0A1V0SG19	Hokovirus	33.3	5.8e-29
VFH65165.1|1727271_1728231_+	iron-compound ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	40.8	4.0e-57
VFH65171.1|1728220_1729177_+	ferric iron ABC transporter membrane-spanning permease	NA	NA	NA	NA	NA
VFH65177.1|1729173_1729431_+	ferrichrome transport ATP-binding protein FhuC	NA	NA	NA	NA	NA
VFH65184.1|1729437_1729926_+	ferrichrome transport ATP-binding protein FhuC	NA	A0A1V0SBM3	Catovirus	35.5	2.3e-08
VFH65191.1|1730021_1730987_+	iron-compound ABC transporter iron-compound-binding protein	NA	NA	NA	NA	NA
1731096:1731123	attL	GGTTTGAAGAGATTTTCGAAGAGTATAA	NA	NA	NA	NA
VFH65198.1|1731211_1731454_-	alpha-hemolysin family protein	NA	A0A2H4PQM5	Staphylococcus_phage	59.4	7.8e-18
VFH65205.1|1731453_1732176_-	ribosomal large subunit pseudouridine synthase B	NA	NA	NA	NA	NA
VFH65212.1|1732162_1732732_-	segregation and condensation protein B	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	34.9	5.0e-15
VFH65220.1|1732750_1733479_-	segregation and condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	22.3	5.3e-09
VFH65230.1|1733478_1734213_-|integrase	integrase	integrase	NA	NA	NA	NA
VFH65237.1|1734209_1734671_-	CBS domain-containing protein	NA	NA	NA	NA	NA
VFH65244.1|1734667_1735189_-	phosphodiesterase, family	NA	NA	NA	NA	NA
VFH65247.1|1735164_1736136_-	deoxyribonucleotide triphosphate pyrophosphatase/uncharacterised domain fusion protein	NA	C4N227	Ugandan_cassava_brown_streak_virus	29.9	3.7e-10
VFH65256.1|1736132_1736927_-	glutamate racemase, COG0796	NA	NA	NA	NA	NA
VFH65263.1|1737133_1737382_-	family protein	NA	NA	NA	NA	NA
VFH65270.1|1737523_1739149_-	alpha,alpha-phosphotrehalase	NA	NA	NA	NA	NA
VFH65277.1|1739326_1741294_-	trehalose PTS system, IIABC components	NA	NA	NA	NA	NA
VFH65284.1|1741478_1742189_+	trehalose operon repressor	NA	NA	NA	NA	NA
VFH65291.1|1742343_1742862_+|transposase	IS1167 transposase	transposase	A0A1S5SBP9	Streptococcus_phage	90.4	7.2e-77
VFH65298.1|1742858_1743629_+|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	86.0	2.3e-119
VFH65305.1|1743703_1744630_-	oligopeptide ABC transporter ATP-binding protein AmiF	NA	G9BWD6	Planktothrix_phage	34.1	2.0e-21
VFH65312.1|1744640_1745708_-	peptide ABC transporter ATP-binding protein	NA	A0A2R8FFL6	Cedratvirus	24.7	6.6e-08
VFH65319.1|1745716_1746643_-	peptide ABC transporter permease	NA	NA	NA	NA	NA
VFH65326.1|1746642_1748139_-	peptide ABC transporter permease	NA	NA	NA	NA	NA
VFH65333.1|1748205_1750185_-	oligopeptide-binding protein AmiA	NA	NA	NA	NA	NA
VFH65340.1|1750871_1752065_-	O-Antigen Polymerase family	NA	NA	NA	NA	NA
VFH65347.1|1752202_1753645_-	sucrose phosphorylase	NA	NA	NA	NA	NA
VFH65354.1|1753647_1753857_-	chlorohydrolase	NA	NA	NA	NA	NA
1753712:1753739	attR	TTATACTCTTCGAAAATCTCTTCAAACC	NA	NA	NA	NA
VFH65361.1|1753863_1754697_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
VFH65368.1|1754710_1755577_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
VFH65374.1|1755590_1756850_-	sugar ABC transporter binding protein	NA	NA	NA	NA	NA
VFH65380.1|1756884_1759047_-	alpha-galactosidase	NA	NA	NA	NA	NA
VFH65387.1|1759154_1760015_+	Msm operon regulatory protein	NA	NA	NA	NA	NA
VFH65390.1|1760011_1760947_+	bifunctional protein, biotin operon repressor; biotin--[acetyl-CoA-carboxylase] synthetase	NA	NA	NA	NA	NA
VFH65397.1|1761154_1761583_+|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	89.5	9.3e-22
VFH65405.1|1768415_1769783_-	RNA methyltransferase	NA	E4ZFI6	Streptococcus_phage	33.9	3.1e-71
VFH65410.1|1769820_1770597_+	regulatory protein RecX	NA	NA	NA	NA	NA
VFH65418.1|1770685_1771219_+	UPF0374 protein SSU05	NA	NA	NA	NA	NA
VFH65425.1|1771573_1771780_-	putative transcriptional regulator	NA	NA	NA	NA	NA
VFH65432.1|1771939_1772458_+|transposase	IS1167 transposase	transposase	A0A1S5SBP9	Streptococcus_phage	93.6	6.3e-81
VFH65439.1|1772454_1772742_+|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	70.6	1.5e-23
VFH65446.1|1772738_1773266_+|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	94.9	7.1e-88
VFH65454.1|1773364_1774987_-	chaperone GroEL	NA	A0A219YK78	uncultured_virus	56.1	2.3e-153
VFH65462.1|1775002_1775287_-	CH10_SMI 10 kDa chaperonin (protein Cpn10)	NA	NA	NA	NA	NA
VFH65469.1|1775442_1775838_-	single-strand DNA-binding protein B	NA	A1EAD1	Streptococcus_phage	45.5	4.0e-27
VFH65476.1|1775915_1776677_-	3-oxoacyl-ACP reductase	NA	A0A0N9R355	Chrysochromulina_ericina_virus	23.5	1.7e-05
>prophage 16
LR216023	Streptococcus pneumoniae strain 2245STDY5699475 genome assembly, chromosome: 1	2104636	2053393	2090962	2104636	protease,holin,transposase	Streptococcus_phage(50.0%)	37	NA	NA
VFH67282.1|2053393_2055517_-|holin	choline binding protein A	holin	NA	NA	NA	NA
VFH67289.1|2055595_2056123_-	membrane protein	NA	NA	NA	NA	NA
VFH67293.1|2056217_2057558_-	signal transduction histidine kinase	NA	NA	NA	NA	NA
VFH67300.1|2057554_2058208_-	DNA-binding response regulator	NA	NA	NA	NA	NA
VFH67308.1|2058849_2061282_-|protease	ATP-dependent Clp protease, ATP-binding subunit	protease	A0A223W0B1	Agrobacterium_phage	40.4	4.2e-127
VFH67315.1|2061283_2061742_-	CtsR family transcriptional regulator	NA	NA	NA	NA	NA
VFH67322.1|2061860_2062589_-	nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.2	1.3e-28
VFH67329.1|2062588_2063596_-	ABC transportersubstrate-binding protein, nitrate/sulfonate/bicarbonate transport	NA	NA	NA	NA	NA
VFH67336.1|2063633_2064392_-	ABC transporter permease, nitrate/sulfonate/bicarbonate transport	NA	NA	NA	NA	NA
VFH67342.1|2064354_2064645_-	Uncharacterized conserved protein	NA	NA	NA	NA	NA
VFH67351.1|2064900_2066247_-|holin	choline binding protein D	holin	NA	NA	NA	NA
VFH67356.1|2066335_2066602_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VFH67362.1|2066603_2067956_-	DNA replication protein DnaC	NA	A0A1P8VVQ6	Streptococcus_phage	61.3	6.3e-149
VFH67369.1|2067999_2068452_-	50S ribosomal protein L9	NA	NA	NA	NA	NA
VFH67371.1|2068448_2070422_-	DHH family protein	NA	NA	NA	NA	NA
VFH67378.1|2070557_2071106_-	ribosome-associated protein	NA	NA	NA	NA	NA
VFH67386.1|2071185_2071848_-	involved in transformation	NA	NA	NA	NA	NA
VFH67393.1|2071844_2073143_-	helicase ComFA	NA	A0A1X9I5S6	Streptococcus_phage	66.6	9.3e-166
VFH67401.1|2073198_2073834_+	Xaa-Pro dipeptidase	NA	A0A1X9I5T8	Streptococcus_phage	71.0	4.4e-76
VFH67408.1|2074118_2075039_+	cysteine synthase	NA	A0A1X9I5K7	Streptococcus_phage	80.7	1.5e-138
VFH67415.1|2075235_2075634_-|transposase	transposase	transposase	NA	NA	NA	NA
VFH67422.1|2075666_2075933_+|transposase	transposase family protein	transposase	NA	NA	NA	NA
VFH67428.1|2076656_2077697_-	elongation factor Ts	NA	NA	NA	NA	NA
VFH67434.1|2077775_2078555_-	30S ribosomal protein S2	NA	NA	NA	NA	NA
VFH67440.1|2078778_2079957_-	CHAP domain-containing protein	NA	NA	NA	NA	NA
VFH67446.1|2080050_2080545_-	rod shape-determining protein MreD	NA	NA	NA	NA	NA
VFH67452.1|2080544_2081363_-	cell shape determining protein MreC	NA	NA	NA	NA	NA
VFH67459.1|2081421_2082216_-	ABC transporter permease, cobalt transport	NA	NA	NA	NA	NA
VFH67465.1|2082208_2083048_-	cobalt ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	32.6	1.1e-15
VFH67471.1|2083032_2083860_-	ABCtransporter ATP-binding protein cobalt transport	NA	W8CYL7	Bacillus_phage	33.3	3.5e-17
VFH67477.1|2083856_2084402_-	phosphatidylglycerophosphate synthase	NA	NA	NA	NA	NA
VFH67483.1|2084412_2085234_-	transcriptional regulation protein	NA	NA	NA	NA	NA
VFH67490.1|2085275_2086559_-|protease	zinc-dependent protease	protease	A0A1E1EST3	Acanthamoeba_castellanii_mimivirus	29.5	6.5e-18
VFH67501.1|2086555_2087806_-|protease	zinc-dependent protease	protease	A0A1X9I714	Streptococcus_phage	42.3	2.7e-93
VFH67507.1|2087964_2088333_+	S4 domain-containing protein YaaA	NA	A0A1X9I5V8	Streptococcus_phage	57.3	7.0e-18
VFH67511.1|2088335_2089433_+	recombination protein recF	NA	NA	NA	NA	NA
VFH67517.1|2089483_2090962_-	inosine-5-monophosphate dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	2.2e-94
