assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900638655.1_58635_F02	LR134531	Pragia fontium strain NCTC12284 genome assembly, chromosome: 1	1	1539865-1540192	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3-cas2,cas8f,cas5f,cas7f,cas6f	cas3,DEDDh,RT,cas3-cas2,cas8f,cas5f,cas7f,cas6f,WYL,csa3,DinG,cas3f,cas1	Type I-F	CTGAACCGCCGTATAGGCGGCTTAGAAA,CTGAACCGCCGTATAGGCGGCTTAGAAA,CTGAACCGCCGTATAGGCGGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	4,5,5	5	TypeI-F	cas3,DEDDh,RT,cas3-cas2,cas8f,cas5f,cas7f,cas6f,WYL,csa3,DinG,cas3f,cas1	NA|324aa|up_6|LR134531.1_1530708_1531680_-,NA	NA|356aa|up_9|LR134531.1_1525802_1526870_+	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|273aa|up_8|LR134531.1_1526915_1527734_-	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|674aa|up_7|LR134531.1_1528629_1530651_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|324aa|up_6|LR134531.1_1530708_1531680_-	NA	NA|91aa|up_5|LR134531.1_1531922_1532195_+	pfam09905, VF530, DNA-binding protein VF530	cas3-cas2|1052aa|up_4|LR134531.1_1532268_1535424_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas8f|434aa|up_3|LR134531.1_1535755_1537057_+	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1)	cas5f|324aa|up_2|LR134531.1_1537053_1538025_+	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas7f|332aa|up_1|LR134531.1_1538063_1539059_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|205aa|up_0|LR134531.1_1539062_1539677_+	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	NA|156aa|down_0|LR134531.1_1540435_1540903_+	COG3133, SlyB, Outer membrane lipoprotein [Cell envelope biogenesis, outer membrane]	NA|304aa|down_1|LR134531.1_1540961_1541873_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|172aa|down_2|LR134531.1_1543306_1543822_+	TIGR02667, Molybdenum_cofactor_biosynthesis_protein_B	NA|160aa|down_3|LR134531.1_1543836_1544316_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|82aa|down_4|LR134531.1_1544315_1544561_+	PRK11130, moaD, molybdopterin synthase small subunit; Provisional	NA|154aa|down_5|LR134531.1_1544562_1545024_+	PRK10678, moaE, molybdopterin synthase catalytic subunit MoaE	NA|192aa|down_6|LR134531.1_1545232_1545808_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|234aa|down_7|LR134531.1_1545975_1546677_+	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins	NA|464aa|down_8|LR134531.1_1546817_1548209_-	cd07100, ALDH_SSADH1_GabD1, Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 1-like	NA|468aa|down_9|LR134531.1_1548766_1550170_+	PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional
GCA_900638655.1_58635_F02	LR134531	Pragia fontium strain NCTC12284 genome assembly, chromosome: 1	3	2376857-2376994	2	CRISPRCasFinder	no		cas3,DEDDh,RT,cas3-cas2,cas8f,cas5f,cas7f,cas6f,WYL,csa3,DinG,cas3f,cas1	Orphan	GGGAATGACAATATAAATCATAGTTAAGAATTCATGTTTATTTTTCTGG	49	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,RT,cas3-cas2,cas8f,cas5f,cas7f,cas6f,WYL,csa3,DinG,cas3f,cas1	NA,NA	NA|214aa|up_9|LR134531.1_2366176_2366818_-	PRK15070, PRK15070, phosphate propanoyltransferase	NA|147aa|up_8|LR134531.1_2366867_2367308_-	cd07045, BMC_CcmK_like, Carbon dioxide concentrating mechanism K (CcmK)-like proteins, Bacterial Micro-Compartment (BMC) domain	NA|317aa|up_7|LR134531.1_2367321_2368272_-	TIGR04395, putative_pyruvate_formate-lyase_activating_enzyme, choline TMA-lyase-activating enzyme	NA|1143aa|up_6|LR134531.1_2368371_2371800_-	TIGR04394, putative_formate_C-acetyltransferase, choline trimethylamine-lyase	NA|383aa|up_5|LR134531.1_2371918_2373067_-	cd08180, PDD, 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism	NA|86aa|up_4|LR134531.1_2373082_2373340_-	pfam03319, EutN_CcmL, Ethanolamine utilisation protein EutN/carboxysome	NA|540aa|up_3|LR134531.1_2373381_2375001_-	cd07122, ALDH_F20_ACDH, Coenzyme A acylating aldehyde dehydrogenase (ACDH), ALDH family 20-like	NA|93aa|up_2|LR134531.1_2375063_2375342_-	cd07045, BMC_CcmK_like, Carbon dioxide concentrating mechanism K (CcmK)-like proteins, Bacterial Micro-Compartment (BMC) domain	NA|95aa|up_1|LR134531.1_2375354_2375639_-	cd07045, BMC_CcmK_like, Carbon dioxide concentrating mechanism K (CcmK)-like proteins, Bacterial Micro-Compartment (BMC) domain	NA|93aa|up_0|LR134531.1_2375663_2375942_-	cd07045, BMC_CcmK_like, Carbon dioxide concentrating mechanism K (CcmK)-like proteins, Bacterial Micro-Compartment (BMC) domain	NA|172aa|down_0|LR134531.1_2377163_2377679_-	pfam15941, FidL_like, FidL-like putative membrane protein	NA|271aa|down_1|LR134531.1_2377682_2378495_-	cd00383, trans_reg_C, DNA-binding effector domain of two-component system response regulators	NA|202aa|down_2|LR134531.1_2378525_2379131_-	pfam17937, TetR_C_28, Tetracyclin repressor-like, C-terminal domain	NA|139aa|down_3|LR134531.1_2379410_2379827_-	COG1832, COG1832, Predicted CoA-binding protein [General function prediction only]	NA|153aa|down_4|LR134531.1_2380011_2380470_+	PRK05234, mgsA, methylglyoxal synthase; Validated	NA|685aa|down_5|LR134531.1_2380521_2382576_-	PRK11054, helD, DNA helicase IV; Provisional	NA|150aa|down_6|LR134531.1_2382798_2383248_+	COG3304, COG3304, Predicted membrane protein [Function unknown]	NA|714aa|down_7|LR134531.1_2383291_2385433_+	TIGR01666, Uncharacterized_protein_HI_1680, TIGR01666 family membrane protein	NA|215aa|down_8|LR134531.1_2385584_2386229_-	pfam04993, TfoX_N, TfoX N-terminal domain	NA|165aa|down_9|LR134531.1_2386464_2386959_+	PRK10595, PRK10595, cell division inhibitor SulA
GCA_900638655.1_58635_F02	LR134531	Pragia fontium strain NCTC12284 genome assembly, chromosome: 1	4	3682253-3682880	3,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas6f,cas7f,cas5f,cas8f,cas3f,cas1,WYL	cas3,DEDDh,RT,cas3-cas2,cas8f,cas5f,cas7f,cas6f,WYL,csa3,DinG,cas3f,cas1	Type I-F	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC	28,28,28	0	0	NA	NA	I-F:I-F:I-F	10,10,10	10	TypeI-F	cas3,DEDDh,RT,cas3-cas2,cas8f,cas5f,cas7f,cas6f,WYL,csa3,DinG,cas3f,cas1	NA,NA	NA|104aa|up_9|LR134531.1_3665907_3666219_+	COG3162, COG3162, Predicted membrane protein [Function unknown]	NA|552aa|up_8|LR134531.1_3666215_3667871_+	PRK09395, actP, cation/acetate symporter ActP	NA|184aa|up_7|LR134531.1_3667923_3668475_-	pfam13453, zf-TFIIB, Transcription factor zinc-finger	NA|234aa|up_6|LR134531.1_3668882_3669584_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|311aa|up_5|LR134531.1_3669636_3670569_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|313aa|up_4|LR134531.1_3670623_3671562_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|87aa|up_3|LR134531.1_3671539_3671800_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|264aa|up_2|LR134531.1_3677860_3678652_-	PRK00865, PRK00865, glutamate racemase; Provisional	NA|616aa|up_1|LR134531.1_3678676_3680524_-	PRK10641, btuB, TonB-dependent vitamin B12 receptor BtuB	NA|368aa|up_0|LR134531.1_3680932_3682036_+	PRK05031, PRK05031, tRNA (uracil-5-)-methyltransferase; Validated	cas6f|213aa|down_0|LR134531.1_3683036_3683675_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas7f|348aa|down_1|LR134531.1_3683683_3684727_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|298aa|down_2|LR134531.1_3684738_3685632_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|426aa|down_3|LR134531.1_3685628_3686906_-	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1)	cas3f|1125aa|down_4|LR134531.1_3686905_3690280_-	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2	cas1|330aa|down_5|LR134531.1_3690276_3691266_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	WYL|279aa|down_6|LR134531.1_3691385_3692222_-	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|125aa|down_7|LR134531.1_3692432_3692807_-	PRK11056, PRK11056, YijD family membrane protein	NA|213aa|down_8|LR134531.1_3692825_3693464_-	PRK11202, PRK11202, HTH-type transcriptional repressor FabR	NA|306aa|down_9|LR134531.1_3693613_3694531_-	PRK11151, PRK11151, DNA-binding transcriptional regulator OxyR; Provisional
GCA_900638655.1_58635_F02	LR134531	Pragia fontium strain NCTC12284 genome assembly, chromosome: 1	5	3737382-3737502	4	CRISPRCasFinder	no		cas3,DEDDh,RT,cas3-cas2,cas8f,cas5f,cas7f,cas6f,WYL,csa3,DinG,cas3f,cas1	Orphan	TTACCCTTGCTTTTTAATGTTAAAATTATAACAT	34	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,RT,cas3-cas2,cas8f,cas5f,cas7f,cas6f,WYL,csa3,DinG,cas3f,cas1	NA|120aa|up_6|LR134531.1_3728155_3728515_-,NA	NA|337aa|up_9|LR134531.1_3725394_3726405_+	COG1494, GlpX, Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins [Carbohydrate transport and metabolism]	NA|214aa|up_8|LR134531.1_3726476_3727118_-	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated	NA|239aa|up_7|LR134531.1_3727187_3727904_-	PRK00173, rph, ribonuclease PH; Reviewed	NA|120aa|up_6|LR134531.1_3728155_3728515_-	NA	NA|255aa|up_5|LR134531.1_3728913_3729678_+	PRK10681, PRK10681, DNA-binding transcriptional repressor DeoR; Provisional	NA|450aa|up_4|LR134531.1_3729821_3731171_-	pfam03573, OprD, outer membrane porin, OprD family	NA|434aa|up_3|LR134531.1_3731393_3732695_-	PRK06078, PRK06078, pyrimidine-nucleoside phosphorylase; Reviewed	NA|395aa|up_2|LR134531.1_3732750_3733935_-	PRK05362, PRK05362, phosphopentomutase; Provisional	NA|651aa|up_1|LR134531.1_3733946_3735899_-	PRK09420, cpdB, bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase	NA|393aa|up_0|LR134531.1_3735978_3737157_-	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism]	NA|227aa|down_0|LR134531.1_3737568_3738249_+	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional	NA|288aa|down_1|LR134531.1_3738490_3739354_+	PRK11820, PRK11820, YicC family protein	NA|249aa|down_2|LR134531.1_3740028_3740775_+	PRK10926, PRK10926, ferredoxin-NADP reductase; Provisional	NA|222aa|down_3|LR134531.1_3740935_3741601_+	pfam07305, DUF1454, Protein of unknown function (DUF1454)	NA|257aa|down_4|LR134531.1_3741766_3742537_+	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|321aa|down_5|LR134531.1_3742610_3743573_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|293aa|down_6|LR134531.1_3743917_3744796_-	PRK09509, fieF, CDF family cation-efflux pump FieF	NA|178aa|down_7|LR134531.1_3744944_3745478_-	PRK12751, cpxP, periplasmic stress adaptor protein CpxP; Reviewed	NA|233aa|down_8|LR134531.1_3745624_3746323_+	PRK10955, PRK10955, envelope stress response regulator transcription factor CpxR	NA|460aa|down_9|LR134531.1_3746319_3747699_+	PRK09470, cpxA, envelope stress sensor histidine kinase CpxA
