The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR134527	Bartonella elizabethae strain NCTC12898 genome assembly, chromosome: 1	2018538	262695	268448	2018538		Brucella_phage(50.0%)	10	NA	NA
VEJ39829.1|262695_263100_-	Phage-related lysozyme (muraminidase)	NA	A0A141GEY9	Brucella_phage	61.0	1.7e-17
VEJ39831.1|263112_263358_-	Phage-related lysozyme (muraminidase)	NA	A0A141GEY9	Brucella_phage	53.8	2.2e-15
VEJ39833.1|263464_263761_+	putative addiction module killer protein	NA	A0A141GEX6	Brucella_phage	49.4	1.5e-15
VEJ39835.1|263801_264113_+	Predicted transcriptional regulator	NA	NA	NA	NA	NA
VEJ39837.1|264292_264451_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ39839.1|264661_265081_-	Phage anti-repressor protein	NA	Q7Y5W2	Haemophilus_phage	38.2	1.3e-15
VEJ39841.1|265524_266610_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ39843.1|266701_266989_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ39845.1|266990_268067_-	Uncharacterised protein	NA	A0A0A8ILA9	Aurantimonas_phage	36.4	3.1e-58
VEJ39847.1|268079_268448_-	Uncharacterised protein	NA	A0A0A8IL52	Aurantimonas_phage	50.0	8.9e-13
>prophage 2
LR134527	Bartonella elizabethae strain NCTC12898 genome assembly, chromosome: 1	2018538	271560	283468	2018538	tail	Acidithiobacillus_phage(11.11%)	19	NA	NA
VEJ39857.1|271560_273489_-|tail	Bacteriophage tail assembly protein	tail	K4I3Y9	Acidithiobacillus_phage	53.6	2.1e-166
VEJ39859.1|273519_274071_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ39862.1|274155_274422_+	Protein of uncharacterised function (DUF497)	NA	NA	NA	NA	NA
VEJ39864.1|274399_274705_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VEJ39866.1|274752_275031_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ39868.1|275027_275768_-	Uncharacterized phage-encoded protein	NA	B5AX29	Iodobacteriophage	39.5	5.7e-27
VEJ39870.1|276167_276359_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ39872.1|276362_276941_-	Uncharacterised protein	NA	A0A0A8IL87	Aurantimonas_phage	34.4	6.5e-10
VEJ39876.1|276937_277264_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ39880.1|277712_278108_-	Uncharacterised protein family (UPF0150)	NA	A0A0U4ISP5	Pseudomonas_phage	31.1	1.7e-06
VEJ39885.1|278104_278305_-	YcfA-like protein	NA	A0A1L2JY37	Aeribacillus_phage	49.1	3.6e-08
VEJ39891.1|278368_278905_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ39896.1|279102_279360_-	Helix-destabilizing protein	NA	A0A0K1LLZ9	Caulobacter_phage	60.7	8.6e-23
VEJ39900.1|279665_279917_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ39904.1|279921_280350_+	Antitoxin HicB	NA	A0A0R6PJC0	Moraxella_phage	37.0	6.1e-13
VEJ39908.1|280562_281417_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ39911.1|281400_281940_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ39916.1|282633_283164_-	Uncharacterized protein conserved in bacteria	NA	A0A076GD06	Sinorhizobium_phage	36.1	1.0e-09
VEJ39922.1|283189_283468_-	Uncharacterised protein	NA	E9P621	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	61.4	4.9e-24
>prophage 3
LR134527	Bartonella elizabethae strain NCTC12898 genome assembly, chromosome: 1	2018538	407792	420217	2018538		Lactobacillus_phage(20.0%)	17	NA	NA
VEJ40135.1|407792_409886_+	Protease 2	NA	A0A1V0SHT0	Klosneuvirus	24.9	2.3e-33
VEJ40137.1|409969_410572_-	Superoxide dismutase [Mn]	NA	Q56AR7	Bacillus_thuringiensis_phage	40.6	2.1e-35
VEJ40139.1|411629_412880_-	site-specific tyrosine recombinase XerC	NA	I3UM24	Rhodobacter_phage	28.3	8.8e-20
VEJ40141.1|412989_413613_-	putative phage-type endonuclease	NA	A0A0U2BXF3	Paracoccus_phage	44.1	6.7e-45
VEJ40143.1|413614_414199_-	ERF superfamily	NA	K4NWX3	Pseudomonas_phage	33.3	1.3e-10
VEJ40145.1|414137_414380_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ40147.1|414744_414864_-	Uncharacterised protein	NA	A0A0A7NU51	Lactobacillus_phage	69.2	5.5e-09
VEJ40149.1|414917_415619_-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA	A0A0A7NP48	Lactobacillus_phage	65.2	2.3e-09
VEJ40151.1|415711_416116_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ40153.1|416299_416476_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ40155.1|416390_416744_-	Uncharacterised protein	NA	A0A1X9HW95	Ruegeria_phage	42.9	1.3e-05
VEJ40158.1|416832_417099_+	putative zinc finger/helix-turn-helix protein, YgiT family	NA	NA	NA	NA	NA
VEJ40160.1|417240_417594_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ40162.1|417700_417949_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ40164.1|417893_418562_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ40166.1|418632_419091_+	Uncharacterised protein	NA	K4ICN3	Acidithiobacillus_phage	65.5	8.4e-53
VEJ40168.1|419095_420217_+	Uncharacterized protein conserved in bacteria	NA	A0A218M9P5	Mycobacterium_phage	48.5	1.0e-11
>prophage 4
LR134527	Bartonella elizabethae strain NCTC12898 genome assembly, chromosome: 1	2018538	637224	678168	2018538	protease,tRNA,integrase,terminase	Edwardsiella_phage(16.0%)	45	667703:667717	684471:684485
VEJ41006.1|637224_637857_+|protease	ATP-dependent Clp protease proteolytic subunit precursor	protease	A0A223W000	Agrobacterium_phage	62.2	5.9e-65
VEJ41011.1|638042_639317_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	57.1	3.5e-133
VEJ41016.1|639501_641928_+|protease	Lon protease	protease	A0A0R6PGP8	Moraxella_phage	49.5	1.6e-203
VEJ41021.1|642160_642439_+	Px	NA	Q2A099	Sodalis_phage	57.3	8.2e-19
VEJ41026.1|643582_644995_-|tRNA	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TrmFO	tRNA	NA	NA	NA	NA
VEJ41032.1|645408_646581_+|integrase	Prophage CP4-57 integrase	integrase	A0A1X9HVL9	Ruegeria_phage	41.6	1.2e-76
VEJ41037.1|646584_646860_-	Predicted transcriptional regulator	NA	NA	NA	NA	NA
VEJ41041.1|646961_647426_-	Uncharacterized conserved protein	NA	A0A1B3AYW8	Gordonia_phage	34.6	3.3e-12
VEJ41047.1|647495_648119_-	putative phage-type endonuclease	NA	A0A0U2BXF3	Paracoccus_phage	45.4	3.8e-48
VEJ41052.1|648120_648966_-	ERF superfamily	NA	W8EDP7	Vibrio_phage	26.7	9.5e-10
VEJ41055.1|649042_649414_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ41060.1|649428_650052_-	bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase	NA	A0A0A7NP48	Lactobacillus_phage	63.0	2.8e-11
VEJ41066.1|650054_650594_-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA	K4Q356	Edwardsiella_phage	56.9	2.5e-11
VEJ41069.1|650606_651299_-	UDP-N-acetylglucosamine acyltransferase	NA	K4Q356	Edwardsiella_phage	56.1	1.2e-10
VEJ41075.1|651425_651791_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ41078.1|651981_652293_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ41082.1|652387_652705_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ41086.1|652715_653294_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ41090.1|653304_653487_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ41096.1|653576_654290_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ41101.1|654365_654830_+	Uncharacterised protein	NA	K4ICN3	Acidithiobacillus_phage	61.6	2.4e-47
VEJ41106.1|654832_655198_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VEJ41108.1|655187_656303_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VEJ41112.1|656530_656992_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ41117.1|657262_657781_+	Uncharacterized phage-encoded protein	NA	A0A192Y918	Salmonella_phage	62.2	7.8e-23
VEJ41121.1|657861_658563_+	Uncharacterised protein	NA	A0A076G7L7	Bacillus_phage	58.3	1.7e-12
VEJ41126.1|658632_658950_-	Uncharacterized protein encoded in hypervariable junctions of pilus gene clusters	NA	NA	NA	NA	NA
VEJ41131.1|658939_659218_-	Uncharacterised protein	NA	A0A2P1A0R7	Gordonia_phage	65.0	9.4e-07
VEJ41136.1|659876_660314_+	Helix-destabilizing protein	NA	A0A0K1LLZ9	Caulobacter_phage	56.4	9.2e-33
VEJ41140.1|660329_660866_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ41141.1|660964_661192_+	Ribbon-helix-helix protein, copG family	NA	NA	NA	NA	NA
VEJ41142.1|661175_661445_+	Toxin RelG	NA	A0A1S5SB46	Streptococcus_phage	40.2	6.5e-13
VEJ41143.1|661632_661968_+	Uncharacterised protein	NA	A0A088FAU1	Sulfitobacter_phage	47.5	8.1e-05
VEJ41144.1|661969_663142_+|terminase	phage terminase, large subunit, PBSX family	terminase	A0A088F6U9	Sulfitobacter_phage	57.5	2.1e-124
VEJ41145.1|664606_665386_-	sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family	NA	K4Q356	Edwardsiella_phage	50.8	1.3e-08
VEJ41146.1|665481_666102_-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA	K4PXF0	Edwardsiella_phage	55.0	7.0e-10
VEJ41147.1|666198_666972_-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA	A0A076G7L7	Bacillus_phage	58.2	3.9e-10
667703:667717	attL	AAAAAGAGATTGATA	NA	NA	NA	NA
VEJ41148.1|668558_673532_-	type I restriction enzyme EcoKI subunit R	NA	A0A2H4UTW8	Bodo_saltans_virus	26.9	5.4e-44
VEJ41149.1|673961_674528_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ41150.1|674573_674867_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ41151.1|675118_675391_-	Toxin RelE2	NA	NA	NA	NA	NA
VEJ41152.1|675387_675678_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ41153.1|675783_676488_-	conjugative transfer relaxase protein TraI	NA	A0A2I6UGE7	Salinibacter_virus	46.8	5.3e-06
VEJ41154.1|676590_676791_-	Predicted transcriptional regulator	NA	NA	NA	NA	NA
VEJ41155.1|677001_678168_-|integrase	Prophage CP4-57 integrase	integrase	A0A088F800	Sulfitobacter_phage	40.9	2.6e-74
684471:684485	attR	AAAAAGAGATTGATA	NA	NA	NA	NA
>prophage 5
LR134527	Bartonella elizabethae strain NCTC12898 genome assembly, chromosome: 1	2018538	989514	997875	2018538	terminase	Sulfitobacter_phage(33.33%)	9	NA	NA
VEJ41432.1|989514_990642_-	Uncharacterised protein	NA	A0A248SKT9	Klebsiella_phage	32.6	1.1e-40
VEJ41433.1|990730_991618_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ41434.1|991631_993638_-	Uncharacterised protein	NA	C5IHN8	Burkholderia_virus	23.0	6.1e-31
VEJ41435.1|993634_994963_-|terminase	phage terminase, large subunit, PBSX family	terminase	A0A088F6U9	Sulfitobacter_phage	58.2	1.7e-146
VEJ41436.1|994943_995276_-	Uncharacterised protein	NA	A0A088FAU1	Sulfitobacter_phage	40.2	1.7e-07
VEJ41437.1|995483_995933_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ41438.1|995936_996467_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ41439.1|996821_997355_-	Uncharacterized phage-associated protein	NA	I6R0L8	Salmonella_phage	37.8	2.4e-19
VEJ41440.1|997437_997875_-	Helix-destabilizing protein	NA	A0A0K1LLZ9	Caulobacter_phage	56.4	1.2e-32
>prophage 6
LR134527	Bartonella elizabethae strain NCTC12898 genome assembly, chromosome: 1	2018538	1005320	1010482	2018538		Edwardsiella_phage(14.29%)	9	NA	NA
VEJ41452.1|1005320_1006067_+	UDP-N-acetylglucosamine acyltransferase	NA	K4Q356	Edwardsiella_phage	62.1	4.4e-11
VEJ41453.1|1006076_1006559_+	Uncharacterised protein	NA	A0A076G7L7	Bacillus_phage	58.6	3.7e-11
VEJ41454.1|1006573_1007032_+	Uncharacterised protein	NA	A0A0A7NU51	Lactobacillus_phage	64.6	7.4e-09
VEJ41455.1|1007104_1007938_+	phage recombination protein Bet	NA	A0A0M3LR26	Mannheimia_phage	42.9	2.4e-37
VEJ41456.1|1007939_1008563_+	putative phage-type endonuclease	NA	A0A0U2BXF3	Paracoccus_phage	43.9	5.5e-47
VEJ41457.1|1008632_1009097_+	Uncharacterized conserved protein	NA	A0A1B3AYW8	Gordonia_phage	34.6	3.3e-12
VEJ41458.1|1009227_1009446_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ41459.1|1009452_1009788_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEJ41460.1|1009741_1010482_+	site-specific tyrosine recombinase XerC	NA	I3UM24	Rhodobacter_phage	28.3	7.0e-17
>prophage 7
LR134527	Bartonella elizabethae strain NCTC12898 genome assembly, chromosome: 1	2018538	1016200	1027202	2018538	tRNA	uncultured_Mediterranean_phage(75.0%)	8	NA	NA
VEJ41464.1|1016200_1016737_-|tRNA	Queuine tRNA-ribosyltransferase	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	54.3	2.0e-42
VEJ41465.1|1016733_1017318_-|tRNA	Queuine tRNA-ribosyltransferase	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	51.6	7.2e-49
VEJ41466.1|1018781_1019294_-	Peptidyl-prolyl cis-trans isomerase B	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	61.8	9.1e-48
VEJ41467.1|1019311_1019908_-	Peptidyl-prolyl cis-trans isomerase B	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	55.9	1.3e-45
VEJ41468.1|1019917_1020415_-	Phosphopantetheine adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	38.8	6.8e-24
VEJ41469.1|1020439_1023217_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	34.2	2.0e-104
VEJ41470.1|1023448_1023955_-	Helix-destabilizing protein	NA	A0A0K1LLZ9	Caulobacter_phage	59.4	8.4e-46
VEJ41471.1|1024286_1027202_+	Excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	62.4	0.0e+00
