assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900638575.1_58116_E01	LR134522	Neisseria meningitidis strain NCTC3372 genome assembly, chromosome: 1	1	79793-81214	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas9	DEDDh,cas2,cas1,cas9,WYL,DinG	Type II-A, or Type II-C?,Type II-B, Type II-B,Type II-C	GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT,GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT,GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	36,36,36	2	2	81083-81112|81149-81178	LR134522.1_1428699-1428670|LR134522.1_707849-707878	NA:NA:NA	21,21,21	21	TypeII-A,orTypeII-C?,TypeII-B,TypeII-B,TypeII-C	DEDDh,cas2,cas1,cas9,WYL,DinG	NA|35aa|up_0|LR134522.1_79530_79635_+,NA|70aa|down_5|LR134522.1_90280_90490_+	NA|100aa|up_9|LR134522.1_67220_67520_+	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|539aa|up_8|LR134522.1_67473_69090_+	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|432aa|up_7|LR134522.1_69151_70447_+	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated	NA|307aa|up_6|LR134522.1_70745_71666_+	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase	NA|930aa|up_5|LR134522.1_71807_74597_+	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|176aa|up_4|LR134522.1_76072_76600_+	PRK00376, lspA, lipoprotein signal peptidase	NA|323aa|up_3|LR134522.1_76628_77597_+	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|186aa|up_2|LR134522.1_77684_78242_-	cd07533, HAD_like, uncharacterized family of the haloacid dehalogenase-like (HAD) hydrolase superfamily, similar to Parvibaculum lavamentivorans  HAD-superfamily hydrolase, subfamily IA, variant 1	NA|336aa|up_1|LR134522.1_78345_79353_-	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	NA|35aa|up_0|LR134522.1_79530_79635_+	NA	cas2|103aa|down_0|LR134522.1_81277_81586_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|305aa|down_1|LR134522.1_81596_82511_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1083aa|down_2|LR134522.1_82577_85826_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|1145aa|down_3|LR134522.1_86103_89538_-	PRK05673, dnaE, DNA polymerase III subunit alpha; Validated	NA|78aa|down_4|LR134522.1_90069_90303_+	COG2501, COG2501, S4-like RNA binding protein [Replication, recombination, and repair]	NA|70aa|down_5|LR134522.1_90280_90490_+	NA	NA|279aa|down_6|LR134522.1_90782_91619_+	COG0613, COG0613, Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]	NA|431aa|down_7|LR134522.1_91670_92963_-	COG3977, COG3977, Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]	NA|637aa|down_8|LR134522.1_93020_94931_-	COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	NA|402aa|down_9|LR134522.1_94978_96184_-	COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
GCA_900638575.1_58116_E01	LR134522	Neisseria meningitidis strain NCTC3372 genome assembly, chromosome: 1	2	103947-104171	2	CRISPRCasFinder	no		DEDDh,cas2,cas1,cas9,WYL,DinG	Orphan	CCGTCATTCCCGCGCAGGCGGGAATC	26	1	7	104096-104145|104096-104145|104096-104145|104096-104145|104096-104145|104096-104145|104096-104145	LR134522.1_199605-199556|LR134522.1_535412-535363|LR134522.1_1035556-1035605|LR134522.1_1457174-1457125|LR134522.1_1458389-1458340|LR134522.1_2085485-2085436|LR134522.1_2113838-2113887	I-E	3	3	Orphan	DEDDh,cas2,cas1,cas9,WYL,DinG	NA,NA	NA|637aa|up_9|LR134522.1_93020_94931_-	COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	NA|402aa|up_8|LR134522.1_94978_96184_-	COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]	NA|414aa|up_7|LR134522.1_96283_97525_-	pfam02397, Bac_transf, Bacterial sugar transferase	NA|160aa|up_6|LR134522.1_97517_97997_-	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|241aa|up_5|LR134522.1_97960_98683_-	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|179aa|up_4|LR134522.1_98702_99239_-	cd03819, GT4_WavL-like, Vibrio cholerae WavL and similar sequences	NA|474aa|up_3|LR134522.1_99770_101192_-	COG2244, RfbX, Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]	NA|370aa|up_2|LR134522.1_101386_102496_-	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD	NA|155aa|up_1|LR134522.1_102527_102992_-	COG1327, COG1327, Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]	NA|281aa|up_0|LR134522.1_103020_103863_-	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|360aa|down_0|LR134522.1_104506_105586_-	PRK00002, aroB, 3-dehydroquinate synthase; Reviewed	NA|171aa|down_1|LR134522.1_105665_106178_-	PRK00131, aroK, shikimate kinase; Reviewed	NA|762aa|down_2|LR134522.1_107355_109641_-	COG4796, HofQ, Type II secretory pathway, component HofQ [Intracellular trafficking and secretion]	NA|182aa|down_3|LR134522.1_109659_110205_-	COG3168, PilP, Tfp pilus assembly protein PilP [Cell motility and secretion / Intracellular trafficking and secretion]	NA|216aa|down_4|LR134522.1_110222_110870_-	COG3167, PilO, Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]	NA|200aa|down_5|LR134522.1_110870_111470_-	COG3166, PilN, Tfp pilus assembly protein PilN [Cell motility and secretion / Intracellular trafficking and secretion]	NA|372aa|down_6|LR134522.1_111472_112588_-	COG4972, PilM, Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]	NA|799aa|down_7|LR134522.1_112739_115136_+	COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane]	NA|210aa|down_8|LR134522.1_115256_115886_-	PRK00454, engB, GTP-binding protein YsxC; Reviewed	NA|208aa|down_9|LR134522.1_116091_116715_+	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]
GCA_900638575.1_58116_E01	LR134522	Neisseria meningitidis strain NCTC3372 genome assembly, chromosome: 1	3	409868-410008	3	CRISPRCasFinder	no		DEDDh,cas2,cas1,cas9,WYL,DinG	Orphan	AAGGCGAGGCAACGCTGTACTGGTTTTTGTTAATCCACTATA	42	1	163	409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966|409910-409966	LR134522.1_37051-36995|LR134522.1_40828-40884|LR134522.1_123869-123925|LR134522.1_127082-127026|LR134522.1_135313-135369|LR134522.1_199911-199967|LR134522.1_261676-261620|LR134522.1_273487-273543|LR134522.1_274724-274780|LR134522.1_310241-310297|LR134522.1_332423-332367|LR134522.1_333579-333635|LR134522.1_362426-362370|LR134522.1_367056-367112|LR134522.1_380926-380870|LR134522.1_391518-391574|LR134522.1_432007-432063|LR134522.1_487007-486951|LR134522.1_496729-496785|LR134522.1_525110-525166|LR134522.1_529813-529869|LR134522.1_535883-535939|LR134522.1_545021-544965|LR134522.1_558804-558748|LR134522.1_607353-607297|LR134522.1_626838-626894|LR134522.1_642522-642578|LR134522.1_659191-659135|LR134522.1_668588-668644|LR134522.1_677390-677334|LR134522.1_677645-677589|LR134522.1_691652-691596|LR134522.1_752848-752904|LR134522.1_793946-794002|LR134522.1_807692-807748|LR134522.1_810820-810764|LR134522.1_836681-836737|LR134522.1_852098-852042|LR134522.1_939764-939820|LR134522.1_949089-949033|LR134522.1_949485-949429|LR134522.1_968955-968899|LR134522.1_989977-990033|LR134522.1_997311-997367|LR134522.1_1023124-1023180|LR134522.1_1035452-1035396|LR134522.1_1040135-1040191|LR134522.1_1081721-1081665|LR134522.1_1091033-1091089|LR134522.1_1096048-1095992|LR134522.1_1103004-1102948|LR134522.1_1106495-1106551|LR134522.1_1107720-1107776|LR134522.1_1122559-1122503|LR134522.1_1123132-1123188|LR134522.1_1165334-1165390|LR134522.1_1193797-1193853|LR134522.1_1201161-1201217|LR134522.1_1227489-1227433|LR134522.1_1331676-1331620|LR134522.1_1373571-1373627|LR134522.1_1414027-1414083|LR134522.1_1433907-1433963|LR134522.1_1455673-1455617|LR134522.1_1456905-1456961|LR134522.1_1457812-1457868|LR134522.1_1468957-1468901|LR134522.1_1509242-1509298|LR134522.1_1514073-1514017|LR134522.1_1524382-1524438|LR134522.1_1527010-1526954|LR134522.1_1556366-1556422|LR134522.1_1587673-1587729|LR134522.1_1601640-1601696|LR134522.1_1611869-1611925|LR134522.1_1626876-1626932|LR134522.1_1642022-1642078|LR134522.1_1694898-1694954|LR134522.1_1711424-1711480|LR134522.1_1734779-1734835|LR134522.1_1737135-1737191|LR134522.1_1816600-1816656|LR134522.1_1821636-1821692|LR134522.1_1822340-1822396|LR134522.1_1872433-1872489|LR134522.1_1902336-1902392|LR134522.1_1909811-1909755|LR134522.1_1989635-1989579|LR134522.1_2024986-2025042|LR134522.1_2025676-2025732|LR134522.1_2036395-2036451|LR134522.1_2082086-2082142|LR134522.1_2082499-2082555|LR134522.1_2086534-2086478|LR134522.1_2097261-2097205|LR134522.1_2118140-2118084|LR134522.1_2118885-2118829|LR134522.1_2123302-2123246|LR134522.1_2133351-2133407|LR134522.1_2140639-2140583|LR134522.1_2172339-2172395|LR134522.1_2176649-2176593|LR134522.1_2775-2719|LR134522.1_17249-17305|LR134522.1_172111-172055|LR134522.1_187217-187161|LR134522.1_199336-199392|LR134522.1_206232-206176|LR134522.1_271633-271577|LR134522.1_280774-280830|LR134522.1_282599-282543|LR134522.1_302419-302475|LR134522.1_319672-319728|LR134522.1_350667-350611|LR134522.1_380071-380127|LR134522.1_460879-460935|LR134522.1_499308-499252|LR134522.1_500668-500612|LR134522.1_528647-528703|LR134522.1_542024-541968|LR134522.1_553195-553139|LR134522.1_605137-605081|LR134522.1_616006-615950|LR134522.1_664071-664015|LR134522.1_750553-750497|LR134522.1_833344-833288|LR134522.1_865219-865275|LR134522.1_883238-883294|LR134522.1_893914-893858|LR134522.1_962269-962213|LR134522.1_1003902-1003846|LR134522.1_1025827-1025771|LR134522.1_1033311-1033367|LR134522.1_1112384-1112328|LR134522.1_1171774-1171718|LR134522.1_1239198-1239142|LR134522.1_1340526-1340470|LR134522.1_1368608-1368552|LR134522.1_1370168-1370224|LR134522.1_1374587-1374643|LR134522.1_1375438-1375494|LR134522.1_1381663-1381607|LR134522.1_1446673-1446617|LR134522.1_1530991-1530935|LR134522.1_1693522-1693578|LR134522.1_1713161-1713217|LR134522.1_1731341-1731397|LR134522.1_1865154-1865210|LR134522.1_1870325-1870381|LR134522.1_1965757-1965701|LR134522.1_2021858-2021914|LR134522.1_2027591-2027535|LR134522.1_2113242-2113186|LR134522.1_2114107-2114051|LR134522.1_2163896-2163952|LR134522.1_324027-323971|LR134522.1_535143-535199|LR134522.1_918378-918322|LR134522.1_1031278-1031334|LR134522.1_1037187-1037131|LR134522.1_1365044-1364988|LR134522.1_1944228-1944172|LR134522.1_1989219-1989163	NA	1	1	Orphan	DEDDh,cas2,cas1,cas9,WYL,DinG	NA|99aa|up_3|LR134522.1_406586_406883_-,NA|202aa|up_1|LR134522.1_407867_408473_+,NA	NA|67aa|up_9|LR134522.1_400477_400678_+	COG2906, Bfd, Bacterioferritin-associated ferredoxin [Inorganic ion transport and metabolism]	NA|78aa|up_8|LR134522.1_400843_401077_+	pfam05768, DUF836, Glutaredoxin-like domain (DUF836)	NA|288aa|up_7|LR134522.1_401550_402414_-	TIGR01214, dTDP-4-keto-L-rhamnose_reductase, dTDP-4-dehydrorhamnose reductase	NA|288aa|up_6|LR134522.1_402611_403475_+	PRK13961, PRK13961, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional	NA|707aa|up_5|LR134522.1_403711_405832_+	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional	NA|223aa|up_4|LR134522.1_405904_406573_-	COG2836, COG2836, Uncharacterized conserved protein [Function unknown]	NA|99aa|up_3|LR134522.1_406586_406883_-	NA	NA|284aa|up_2|LR134522.1_407019_407871_+	PRK00450, dapF, diaminopimelate epimerase; Provisional	NA|202aa|up_1|LR134522.1_407867_408473_+	NA	NA|311aa|up_0|LR134522.1_408665_409598_+	TIGR01139, Cysteine_synthase, cysteine synthase A	NA|300aa|down_0|LR134522.1_410163_411063_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|340aa|down_1|LR134522.1_411327_412347_-	PRK10861, PRK10861, signal peptidase I	NA|598aa|down_2|LR134522.1_412489_414283_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|234aa|down_3|LR134522.1_414427_415129_-	PRK05584, PRK05584, 5'-methylthioadenosine/adenosylhomocysteine nucleosidase	NA|377aa|down_4|LR134522.1_415296_416427_+	COG5008, PilU, Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]	NA|326aa|down_5|LR134522.1_416460_417438_+	PRK08699, PRK08699, DNA polymerase III subunit delta'; Validated	NA|117aa|down_6|LR134522.1_417441_417792_+	COG3215, PilZ, Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]	NA|260aa|down_7|LR134522.1_417796_418576_+	COG0084, TatD, Mg-dependent DNase [DNA replication, recombination, and repair]	NA|72aa|down_8|LR134522.1_418601_418817_+	COG3042, Hlx, Putative hemolysin [General function prediction only]	NA|104aa|down_9|LR134522.1_418917_419229_+	TIGR00365, TIGR00365, monothiol glutaredoxin, Grx4 family
GCA_900638575.1_58116_E01	LR134522	Neisseria meningitidis strain NCTC3372 genome assembly, chromosome: 1	4	1217862-1217971	4	CRISPRCasFinder	no		DEDDh,cas2,cas1,cas9,WYL,DinG	Orphan	TTGCGTAGGGTGGGCTTCAGCCCACC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas2,cas1,cas9,WYL,DinG	NA|189aa|up_9|LR134522.1_1206368_1206935_-,NA|244aa|up_2|LR134522.1_1213982_1214714_+,NA|81aa|up_1|LR134522.1_1215002_1215245_-,NA|254aa|down_7|LR134522.1_1227631_1228393_-,NA|84aa|down_8|LR134522.1_1228492_1228744_+	NA|189aa|up_9|LR134522.1_1206368_1206935_-	NA	NA|112aa|up_8|LR134522.1_1206952_1207288_-	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown]	NA|302aa|up_7|LR134522.1_1207416_1208322_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|163aa|up_6|LR134522.1_1208383_1208872_-	pfam08139, LPAM_1, Prokaryotic membrane lipoprotein lipid attachment site	NA|288aa|up_5|LR134522.1_1209057_1209921_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|377aa|up_4|LR134522.1_1209961_1211092_-	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold	NA|886aa|up_3|LR134522.1_1211263_1213921_+	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|244aa|up_2|LR134522.1_1213982_1214714_+	NA	NA|81aa|up_1|LR134522.1_1215002_1215245_-	NA	NA|804aa|up_0|LR134522.1_1215422_1217834_+	COG1002, COG1002, Type II restriction enzyme, methylase subunits [Defense mechanisms]	NA|228aa|down_0|LR134522.1_1218635_1219319_-	PRK14118, gpmA, 2,3-diphosphoglycerate-dependent phosphoglycerate mutase	NA|766aa|down_1|LR134522.1_1219620_1221918_+	PRK05561, PRK05561, DNA topoisomerase 4 subunit A	NA|506aa|down_2|LR134522.1_1221937_1223455_+	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS	NA|156aa|down_3|LR134522.1_1223506_1223974_+	cd19926, REC_PilR, phosphoacceptor receiver (REC) domain of type 4 fimbriae expression regulatory protein PilR and similar proteins	NA|251aa|down_4|LR134522.1_1224077_1224830_+	pfam04445, SAM_MT, Putative SAM-dependent methyltransferase	NA|69aa|down_5|LR134522.1_1225863_1226070_-	pfam10981, DUF2788, Protein of unknown function (DUF2788)	NA|390aa|down_6|LR134522.1_1226164_1227334_-	TIGR01325, O_suc_HS_sulf, O-succinylhomoserine sulfhydrylase	NA|254aa|down_7|LR134522.1_1227631_1228393_-	NA	NA|84aa|down_8|LR134522.1_1228492_1228744_+	NA	NA|269aa|down_9|LR134522.1_1228795_1229602_+	cd13624, PBP2_Arg_Lys_His, Substrate binding domain of the arginine-, lysine-, histidine-binding protein ArtJ; the type 2 periplasmic binding protein fold
GCA_900638575.1_58116_E01	LR134522	Neisseria meningitidis strain NCTC3372 genome assembly, chromosome: 1	5	1728456-1728554	5	CRISPRCasFinder	no		DEDDh,cas2,cas1,cas9,WYL,DinG	Orphan	GGATTCCCGCCTGCGCGGGAATGACG	26	1	2	1728482-1728528|1728482-1728528	LR134522.1_1233099-1233053|LR134522.1_1728123-1728169	I-E	1	1	Orphan	DEDDh,cas2,cas1,cas9,WYL,DinG	NA|89aa|up_4|LR134522.1_1721651_1721918_-,NA|82aa|up_3|LR134522.1_1722064_1722310_-,NA|162aa|down_6|LR134522.1_1736559_1737045_-	NA|344aa|up_9|LR134522.1_1717460_1718492_+	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]	NA|242aa|up_8|LR134522.1_1718747_1719473_-	COG2360, Aat, Leu/Phe-tRNA-protein transferase [Posttranslational modification, protein turnover, chaperones]	NA|209aa|up_7|LR134522.1_1719542_1720169_-	PRK09462, fur, ferric uptake regulator; Provisional	NA|126aa|up_6|LR134522.1_1720195_1720573_+	COG2913, OlmA, Outer membrane lipoprotein OmlA (small protein A) [Cell envelope biogenesis, outer membrane]	NA|270aa|up_5|LR134522.1_1720582_1721392_+	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional	NA|89aa|up_4|LR134522.1_1721651_1721918_-	NA	NA|82aa|up_3|LR134522.1_1722064_1722310_-	NA	NA|385aa|up_2|LR134522.1_1722317_1723472_-	COG0763, LpxB, Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]	NA|331aa|up_1|LR134522.1_1723537_1724530_-	PRK11025, PRK11025, 23S rRNA pseudouridine(955/2504/2580) synthase RluC	NA|920aa|up_0|LR134522.1_1725023_1727783_+	PRK10811, rne, ribonuclease E; Reviewed	NA|330aa|down_0|LR134522.1_1728569_1729559_-	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|477aa|down_1|LR134522.1_1729718_1731149_+	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism]	NA|632aa|down_2|LR134522.1_1731473_1733369_+	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|195aa|down_3|LR134522.1_1733437_1734022_+	cd07182, RNase_HII_bacteria_HII_like, Bacterial Ribonuclease HII-like	NA|258aa|down_4|LR134522.1_1734968_1735742_-	pfam13614, AAA_31, AAA domain	NA|208aa|down_5|LR134522.1_1735840_1736464_-	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA|162aa|down_6|LR134522.1_1736559_1737045_-	NA	NA|376aa|down_7|LR134522.1_1737454_1738582_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|186aa|down_8|LR134522.1_1738762_1739320_+	PRK00083, frr, ribosome recycling factor; Reviewed	NA|249aa|down_9|LR134522.1_1739375_1740122_+	pfam01255, Prenyltransf, Putative undecaprenyl diphosphate synthase
GCA_900638575.1_58116_E01	LR134522	Neisseria meningitidis strain NCTC3372 genome assembly, chromosome: 1	7	1931744-1931837	7	CRISPRCasFinder	no		DEDDh,cas2,cas1,cas9,WYL,DinG	Orphan	GCAATATTCAAAGTTTATAAAAGACC	26	1	3	1931770-1931811|1931770-1931811|1931770-1931811	LR134522.1_54993-54952|LR134522.1_1868504-1868463|LR134522.1_1932816-1932857	NA	1	1	Orphan	DEDDh,cas2,cas1,cas9,WYL,DinG	NA,NA|72aa|down_6|LR134522.1_1947282_1947498_-	NA|422aa|up_9|LR134522.1_1921926_1923192_+	TIGR01412, Probable_deferrochelatase/peroxidase_EfeN, Tat-translocated enzyme	NA|110aa|up_8|LR134522.1_1923263_1923593_-	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]	NA|457aa|up_7|LR134522.1_1923669_1925040_-	TIGR01173, Bifunctional_glmU_protein_	NA|91aa|up_6|LR134522.1_1925094_1925367_-	pfam08139, LPAM_1, Prokaryotic membrane lipoprotein lipid attachment site	NA|244aa|up_5|LR134522.1_1925342_1926074_-	TIGR01993, Suppressor_of_disruption_of_TFIIS, pyrimidine 5'-nucleotidase	NA|334aa|up_4|LR134522.1_1926132_1927134_+	TIGR01254, Thiamine-binding_periplasmic_protein, ABC transporter periplasmic binding protein, thiB subfamily	NA|283aa|up_3|LR134522.1_1927227_1928076_+	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]	NA|162aa|up_2|LR134522.1_1928101_1928587_+	pfam02464, CinA, Competence-damaged protein	NA|523aa|up_1|LR134522.1_1928688_1930257_-	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|422aa|up_0|LR134522.1_1930401_1931667_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|95aa|down_0|LR134522.1_1932255_1932540_+	cd10448, GIY-YIG_unchar_3, GIY-YIG domain of uncharacterized hypothetical protein found in bacteria	NA|1054aa|down_1|LR134522.1_1933440_1936602_+	COG3419, PilY1, Tfp pilus assembly protein, tip-associated adhesin PilY1 [Cell motility and secretion / Intracellular trafficking and secretion]	NA|1390aa|down_2|LR134522.1_1937738_1941908_-	COG2911, COG2911, Uncharacterized protein conserved in bacteria [Function unknown]	NA|616aa|down_3|LR134522.1_1941962_1943810_-	COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane]	NA|410aa|down_4|LR134522.1_1944373_1945603_+	PRK13628, PRK13628, serine/threonine transporter SstT; Provisional	NA|498aa|down_5|LR134522.1_1945714_1947208_+	pfam01298, TbpB_B_D, C-lobe and N-lobe beta barrels of Tf-binding protein B	NA|72aa|down_6|LR134522.1_1947282_1947498_-	NA	NA|72aa|down_7|LR134522.1_1947490_1947706_-	pfam13783, DUF4177, Domain of unknown function (DUF4177)	NA|448aa|down_8|LR134522.1_1947912_1949256_-	PRK05370, PRK05370, argininosuccinate synthase; Validated	NA|267aa|down_9|LR134522.1_1949380_1950181_+	COG1058, CinA, Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
GCA_900638575.1_58116_E01	LR134522	Neisseria meningitidis strain NCTC3372 genome assembly, chromosome: 1	8	1937331-1937414	8	CRISPRCasFinder	no		DEDDh,cas2,cas1,cas9,WYL,DinG	Orphan	CTAGATTCCCGCTTTCGCGGGAATGACGG	29	1	8	1937360-1937385|1937360-1937385|1937360-1937385|1937360-1937385|1937360-1937385|1937360-1937385|1937360-1937385|1937360-1937385	LR134522.1_350247-350272|LR134522.1_351088-351113|LR134522.1_521735-521710|LR134522.1_522487-522462|LR134522.1_1036275-1036300|LR134522.1_351601-351626|LR134522.1_1035758-1035783|LR134522.1_1037019-1037044	I-E	1	1	Orphan	DEDDh,cas2,cas1,cas9,WYL,DinG	NA,NA|72aa|down_4|LR134522.1_1947282_1947498_-,NA|125aa|down_9|LR134522.1_1952163_1952538_-	NA|457aa|up_9|LR134522.1_1923669_1925040_-	TIGR01173, Bifunctional_glmU_protein_	NA|91aa|up_8|LR134522.1_1925094_1925367_-	pfam08139, LPAM_1, Prokaryotic membrane lipoprotein lipid attachment site	NA|244aa|up_7|LR134522.1_1925342_1926074_-	TIGR01993, Suppressor_of_disruption_of_TFIIS, pyrimidine 5'-nucleotidase	NA|334aa|up_6|LR134522.1_1926132_1927134_+	TIGR01254, Thiamine-binding_periplasmic_protein, ABC transporter periplasmic binding protein, thiB subfamily	NA|283aa|up_5|LR134522.1_1927227_1928076_+	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]	NA|162aa|up_4|LR134522.1_1928101_1928587_+	pfam02464, CinA, Competence-damaged protein	NA|523aa|up_3|LR134522.1_1928688_1930257_-	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|422aa|up_2|LR134522.1_1930401_1931667_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|95aa|up_1|LR134522.1_1932255_1932540_+	cd10448, GIY-YIG_unchar_3, GIY-YIG domain of uncharacterized hypothetical protein found in bacteria	NA|1054aa|up_0|LR134522.1_1933440_1936602_+	COG3419, PilY1, Tfp pilus assembly protein, tip-associated adhesin PilY1 [Cell motility and secretion / Intracellular trafficking and secretion]	NA|1390aa|down_0|LR134522.1_1937738_1941908_-	COG2911, COG2911, Uncharacterized protein conserved in bacteria [Function unknown]	NA|616aa|down_1|LR134522.1_1941962_1943810_-	COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane]	NA|410aa|down_2|LR134522.1_1944373_1945603_+	PRK13628, PRK13628, serine/threonine transporter SstT; Provisional	NA|498aa|down_3|LR134522.1_1945714_1947208_+	pfam01298, TbpB_B_D, C-lobe and N-lobe beta barrels of Tf-binding protein B	NA|72aa|down_4|LR134522.1_1947282_1947498_-	NA	NA|72aa|down_5|LR134522.1_1947490_1947706_-	pfam13783, DUF4177, Domain of unknown function (DUF4177)	NA|448aa|down_6|LR134522.1_1947912_1949256_-	PRK05370, PRK05370, argininosuccinate synthase; Validated	NA|267aa|down_7|LR134522.1_1949380_1950181_+	COG1058, CinA, Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]	NA|329aa|down_8|LR134522.1_1950220_1951207_+	COG0616, SppA, Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|125aa|down_9|LR134522.1_1952163_1952538_-	NA
GCA_900638575.1_58116_E01	LR134522	Neisseria meningitidis strain NCTC3372 genome assembly, chromosome: 1	9	2028133-2028237	9	CRISPRCasFinder	no		DEDDh,cas2,cas1,cas9,WYL,DinG	Orphan	GATTCCCACTTTCGTGGGAATGACGG	26	0	0	NA	NA	I-E	1	1	Orphan	DEDDh,cas2,cas1,cas9,WYL,DinG	NA,NA	NA|146aa|up_9|LR134522.1_2014414_2014852_+	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|90aa|up_8|LR134522.1_2014920_2015190_+	COG1925, FruB, Phosphotransferase system, HPr-related proteins [Carbohydrate transport and metabolism]	NA|592aa|up_7|LR134522.1_2015189_2016965_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|313aa|up_6|LR134522.1_2017408_2018347_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|292aa|up_5|LR134522.1_2018355_2019231_-	cd03676, Nudix_hydrolase_3, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|634aa|up_4|LR134522.1_2019828_2021730_+	PRK09284, PRK09284, thiamine biosynthesis protein ThiC; Provisional	NA|330aa|up_3|LR134522.1_2023569_2024559_-	pfam00267, Porin_1, Gram-negative porin	NA|108aa|up_2|LR134522.1_2025803_2026127_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|80aa|up_1|LR134522.1_2026114_2026354_-	COG2336, MazE, Growth regulator [Signal transduction mechanisms]	NA|266aa|up_0|LR134522.1_2026476_2027274_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|231aa|down_0|LR134522.1_2028680_2029373_-	COG1451, COG1451, Predicted metal-dependent hydrolase [General function prediction only]	NA|248aa|down_1|LR134522.1_2029369_2030113_-	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|188aa|down_2|LR134522.1_2030141_2030705_-	PRK08942, PRK08942, D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA|189aa|down_3|LR134522.1_2030701_2031268_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|551aa|down_4|LR134522.1_2031437_2033090_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|414aa|down_5|LR134522.1_2033159_2034401_-	PRK10483, PRK10483, tryptophan permease; Provisional	NA|239aa|down_6|LR134522.1_2034564_2035281_+	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|306aa|down_7|LR134522.1_2035317_2036235_+	TIGR00938, homoserine_kinase_homolog, homoserine kinase, Neisseria type	NA|173aa|down_8|LR134522.1_2036573_2037092_-	TIGR01313, Thermosensitive_gluconokinase, carbohydrate kinase, thermoresistant glucokinase family	NA|462aa|down_9|LR134522.1_2037111_2038497_-	COG2610, GntT, H+/gluconate symporter and related permeases [Carbohydrate transport and metabolism / Amino acid transport and metabolism]
GCA_900638575.1_58116_E01	LR134522	Neisseria meningitidis strain NCTC3372 genome assembly, chromosome: 1	10	2118629-2118712	10	CRISPRCasFinder	no		DEDDh,cas2,cas1,cas9,WYL,DinG	Orphan	CTAGATTCCCGCTTTCGCGGGAATGACGG	29	1	8	2118658-2118683|2118658-2118683|2118658-2118683|2118658-2118683|2118658-2118683|2118658-2118683|2118658-2118683|2118658-2118683	LR134522.1_350247-350272|LR134522.1_351088-351113|LR134522.1_521735-521710|LR134522.1_522487-522462|LR134522.1_1036275-1036300|LR134522.1_351601-351626|LR134522.1_1035758-1035783|LR134522.1_1037019-1037044	I-E	1	1	Orphan	DEDDh,cas2,cas1,cas9,WYL,DinG	NA,NA|110aa|down_1|LR134522.1_2121945_2122275_-,NA|130aa|down_3|LR134522.1_2125159_2125549_-	NA|415aa|up_9|LR134522.1_2102943_2104188_+	TIGR01048, Diaminopimelate_decarboxylase, diaminopimelate decarboxylase	NA|31aa|up_8|LR134522.1_2104223_2104316_-	pfam16951, MaAIMP_sms, Putative methionine and alanine importer, small subunit	NA|529aa|up_7|LR134522.1_2104312_2105899_-	cd10334, SLC6sbd_u1, uncharacterized bacterial and archaeal solute carrier 6 subfamily; solute-binding domain	NA|218aa|up_6|LR134522.1_2106061_2106715_-	COG3676, COG3676, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|97aa|up_5|LR134522.1_2106941_2107232_+	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|545aa|up_4|LR134522.1_2107324_2108959_+	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|749aa|up_3|LR134522.1_2109565_2111812_-	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein	NA|367aa|up_2|LR134522.1_2111892_2112993_-	pfam16960, HpuA, Haemoglobin-haptoglobin utilisation, porphyrin transporter	NA|506aa|up_1|LR134522.1_2114313_2115831_+	pfam04575, DUF560, Protein of unknown function (DUF560)	NA|594aa|up_0|LR134522.1_2115889_2117671_-	COG0147, TrpE, Anthranilate/para-aminobenzoate synthases component I [Amino acid transport and metabolism / Coenzyme metabolism]	NA|974aa|down_0|LR134522.1_2119070_2121992_-	cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases	NA|110aa|down_1|LR134522.1_2121945_2122275_-	NA	NA|481aa|down_2|LR134522.1_2123473_2124916_-	cd07088, ALDH_LactADH-AldA, Escherichia coli lactaldehyde dehydrogenase AldA-like	NA|130aa|down_3|LR134522.1_2125159_2125549_-	NA	NA|306aa|down_4|LR134522.1_2125756_2126674_-	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|267aa|down_5|LR134522.1_2126846_2127647_+	COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|259aa|down_6|LR134522.1_2127694_2128471_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|165aa|down_7|LR134522.1_2128521_2129016_+	TIGR04430, OM_asym_MlaD, outer membrane lipid asymmetry maintenance protein MlaD	NA|197aa|down_8|LR134522.1_2129052_2129643_+	COG2854, Ttg2D, ABC-type transport system involved in resistance to organic solvents, auxiliary component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|93aa|down_9|LR134522.1_2129699_2129978_+	COG3113, COG3113, Predicted NTP binding protein (contains STAS domain) [General function prediction only]
GCA_900638575.1_58116_E01	LR134522	Neisseria meningitidis strain NCTC3372 genome assembly, chromosome: 1	11	2160565-2160674	11	CRISPRCasFinder	no		DEDDh,cas2,cas1,cas9,WYL,DinG	Orphan	TTTCTAGATTCCCGCTTTTGCGGGAATGATGGCGG	35	1	1	2160600-2160639	LR134522.1_2161414-2161453	I-E	1	1	Orphan	DEDDh,cas2,cas1,cas9,WYL,DinG	NA,NA	NA|178aa|up_9|LR134522.1_2149012_2149546_+	PRK13429, PRK13429, F0F1 ATP synthase subunit delta; Provisional	NA|516aa|up_8|LR134522.1_2149556_2151104_+	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated	NA|292aa|up_7|LR134522.1_2151128_2152004_+	PRK05621, PRK05621, F0F1 ATP synthase subunit gamma; Validated	NA|466aa|up_6|LR134522.1_2152041_2153439_+	PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated	NA|141aa|up_5|LR134522.1_2153449_2153872_+	PRK00571, atpC, F0F1 ATP synthase subunit epsilon; Validated	NA|302aa|up_4|LR134522.1_2154226_2155132_+	PRK09348, glyQ, glycyl-tRNA synthetase subunit alpha; Validated	NA|137aa|up_3|LR134522.1_2155208_2155619_+	COG3171, COG3171, Uncharacterized protein conserved in bacteria [Function unknown]	NA|688aa|up_2|LR134522.1_2155639_2157703_+	PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated	NA|253aa|up_1|LR134522.1_2158051_2158810_+	cd04195, GT2_AmsE_like, GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis	NA|269aa|up_0|LR134522.1_2158809_2159616_+	COG3306, COG3306, Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane]	NA|242aa|down_0|LR134522.1_2161564_2162290_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|150aa|down_1|LR134522.1_2162498_2162948_+	cd01637, IMPase_like, Inositol-monophosphatase-like domains	NA|116aa|down_2|LR134522.1_2162944_2163292_+	cd01637, IMPase_like, Inositol-monophosphatase-like domains	NA|92aa|down_3|LR134522.1_2163508_2163784_-	PRK01752, PRK01752, YchJ family protein	NA|263aa|down_4|LR134522.1_2164313_2165102_-	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	NA|125aa|down_5|LR134522.1_2165867_2166242_+	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|52aa|down_6|LR134522.1_2166308_2166464_+	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	NA|249aa|down_7|LR134522.1_2166805_2167552_-	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|522aa|down_8|LR134522.1_2167613_2169179_-	PRK00074, guaA, GMP synthase; Reviewed	NA|622aa|down_9|LR134522.1_2169278_2171144_-	TIGR02203, Lipid_A_export_ATP-binding/permease_protein_msbA
