assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900638565.1_57800_G01	LR134524	Peptoniphilus harei strain NCTC13077 genome assembly, chromosome: 1	2	431610-434323	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh	csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas2,csm6,DinG,cas4,cas8c	Type I-E	GTAGTCCCCGCACAGGCGGGGGTGATCC,GTAGTCCCCGCACANGCNGGGGTGATCCT,GTAGTCCCCGCACAGGCGGGGGTGATCC	28,29,28	0	0	NA	NA	NA:NA:NA	44,44,41	44	TypeI-E	csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas2,csm6,DinG,cas4,cas8c	NA,NA|91aa|down_0|LR134524.1_434383_434656_+,NA|89aa|down_1|LR134524.1_434730_434997_+,NA|49aa|down_6|LR134524.1_446120_446267_+	NA|317aa|up_9|LR134524.1_419628_420579_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|452aa|up_8|LR134524.1_420651_422007_-	cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA	cas3|926aa|up_7|LR134524.1_422252_425030_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|563aa|up_6|LR134524.1_425004_426693_+	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cse2gr11|203aa|up_5|LR134524.1_426702_427311_+	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas7|363aa|up_4|LR134524.1_427300_428389_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|198aa|up_3|LR134524.1_428501_429095_+	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|222aa|up_2|LR134524.1_429066_429732_+	pfam08798, CRISPR_assoc, CRISPR associated protein	cas1|315aa|up_1|LR134524.1_429733_430678_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	DEDDh|300aa|up_0|LR134524.1_430677_431577_+	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family	NA|91aa|down_0|LR134524.1_434383_434656_+	NA	NA|89aa|down_1|LR134524.1_434730_434997_+	NA	NA|457aa|down_2|LR134524.1_435027_436398_-	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]	NA|247aa|down_3|LR134524.1_436631_437372_+	pfam13930, Endonuclea_NS_2, DNA/RNA non-specific endonuclease	NA|214aa|down_4|LR134524.1_437699_438341_+	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|322aa|down_5|LR134524.1_438403_439369_+	TIGR00433, biotin_synthase, biotin synthase	NA|49aa|down_6|LR134524.1_446120_446267_+	NA	NA|295aa|down_7|LR134524.1_446259_447144_+	COG0348, NapH, Polyferredoxin [Energy production and conversion]	NA|190aa|down_8|LR134524.1_447136_447706_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|538aa|down_9|LR134524.1_447904_449518_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
GCA_900638565.1_57800_G01	LR134524	Peptoniphilus harei strain NCTC13077 genome assembly, chromosome: 1	3	629638-630477	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas2,csm6	csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas2,csm6,DinG,cas4,cas8c	Type III-A,Type III-D,Type III-C,Type III-B	CATGAAAAAAAGAAAAACCCCAGAAGGGGACGGTAACT,ATGAANAAAAGAAAAACCCCANNAGGGGACGGTAAC,CACATGAAAAAAAGAAAAACCCCAGAAGGGGACGGTAACTT	38,36,41	0	0	NA	NA	NA:NA:NA	10,10,2	10	TypeIII-A,TypeIII-D,TypeIII-C,TypeIII-B	csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas2,csm6,DinG,cas4,cas8c	NA,NA	NA|289aa|up_9|LR134524.1_620412_621279_+	PRK13637, cbiO, energy-coupling factor transporter ATPase	NA|266aa|up_8|LR134524.1_621271_622069_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|245aa|up_7|LR134524.1_622065_622800_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	cas6|248aa|up_6|LR134524.1_622895_623639_+	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	cas10|771aa|up_5|LR134524.1_623631_625944_+	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm2gr11|126aa|up_4|LR134524.1_625945_626323_+	pfam03750, Csm2_III-A, Csm2 Type III-A	csm3gr7|226aa|up_3|LR134524.1_626335_627013_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm4gr5|308aa|up_2|LR134524.1_627012_627936_+	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm5gr7|356aa|up_1|LR134524.1_627937_629005_+	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5	cas2|64aa|up_0|LR134524.1_629321_629513_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	csm6|444aa|down_0|LR134524.1_630496_631828_+	pfam09659, Cas_Csm6, CRISPR-associated protein (Cas_Csm6)	NA|129aa|down_1|LR134524.1_631972_632359_+	pfam03780, Asp23, Asp23 family, cell envelope-related function	NA|133aa|down_2|LR134524.1_632355_632754_+	PRK00202, nusB, transcription antitermination factor NusB	NA|484aa|down_3|LR134524.1_632755_634207_+	TIGR00237, exodeoxyribonuclease_VII_large_subunit, exodeoxyribonuclease VII, large subunit	NA|75aa|down_4|LR134524.1_634207_634432_+	PRK00977, PRK00977, exodeoxyribonuclease VII small subunit; Provisional	NA|286aa|down_5|LR134524.1_634415_635273_+	cd00685, Trans_IPPS_HT, Trans-Isoprenyl Diphosphate Synthases, head-to-tail	NA|267aa|down_6|LR134524.1_635272_636073_+	COG1189, COG1189, Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]	NA|554aa|down_7|LR134524.1_636080_637742_+	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|184aa|down_8|LR134524.1_637742_638294_+	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate	NA|267aa|down_9|LR134524.1_638286_639087_+	cd09009, PNP-EcPNPII_like, purine nucleoside phosphorylases similar to human PNP and Escherichia coli PNP-II (XapA)
GCA_900638565.1_57800_G01	LR134524	Peptoniphilus harei strain NCTC13077 genome assembly, chromosome: 1	4	1295138-1295218	4	CRISPRCasFinder	no		csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas2,csm6,DinG,cas4,cas8c	Orphan	AGTTTTAAATTATTTTTCTAAAA	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas2,csm6,DinG,cas4,cas8c	NA,NA|74aa|down_2|LR134524.1_1295716_1295938_-,NA|223aa|down_5|LR134524.1_1298611_1299280_-,NA|86aa|down_6|LR134524.1_1299616_1299874_-	NA|422aa|up_9|LR134524.1_1282472_1283738_-	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|295aa|up_8|LR134524.1_1284155_1285040_+	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|234aa|up_7|LR134524.1_1285260_1285962_-	pfam02517, Abi, CAAX protease self-immunity	NA|180aa|up_6|LR134524.1_1285948_1286488_-	TIGR02727, Uncharacterized_protein_YqgN, 5,10-methenyltetrahydrofolate synthetase	NA|868aa|up_5|LR134524.1_1286480_1289084_-	pfam12705, PDDEXK_1, PD-(D/E)XK nuclease superfamily	NA|330aa|up_4|LR134524.1_1289064_1290054_-	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|229aa|up_3|LR134524.1_1290127_1290814_+	pfam02618, YceG, YceG-like family	NA|362aa|up_2|LR134524.1_1292093_1293179_+	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|84aa|up_1|LR134524.1_1293785_1294037_+	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family	NA|126aa|up_0|LR134524.1_1294033_1294411_+	COG3654, Doc, Prophage maintenance system killer protein [General function prediction only]	NA|50aa|down_0|LR134524.1_1295266_1295416_-	pfam12841, YvrJ, YvrJ protein family	NA|73aa|down_1|LR134524.1_1295424_1295643_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)	NA|74aa|down_2|LR134524.1_1295716_1295938_-	NA	NA|159aa|down_3|LR134524.1_1296022_1296499_-	COG5632, COG5632, N-acetylmuramoyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]	NA|253aa|down_4|LR134524.1_1296503_1297262_-	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|223aa|down_5|LR134524.1_1298611_1299280_-	NA	NA|86aa|down_6|LR134524.1_1299616_1299874_-	NA	NA|789aa|down_7|LR134524.1_1300059_1302426_-	pfam00395, SLH, S-layer homology domain	NA|277aa|down_8|LR134524.1_1303467_1304298_-	pfam04383, KilA-N, KilA-N domain	NA|375aa|down_9|LR134524.1_1304326_1305451_-	COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
GCA_900638565.1_57800_G01	LR134524	Peptoniphilus harei strain NCTC13077 genome assembly, chromosome: 1	5	1589037-1591813	5,3,3	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas2,csm6,DinG,cas4,cas8c	Type I-U, Type I-U?,Type I-C	ATTTCAATCCACGCACCCGTATGGGGTGCGAC,ATTTCAATCCACGCACCCGTATGGGGTGCGAC,ATTTCAATCCACGCACCCGTATGGGGTGCGAC	32,32,32	0	0	NA	NA	I-C:I-C:I-C	41,41,34	41	TypeI-U,TypeI-U?,TypeI-C	csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas2,csm6,DinG,cas4,cas8c	NA,NA	NA|173aa|up_9|LR134524.1_1577098_1577617_+	cd02151, nitroreductase, nitroreductase family protein	NA|403aa|up_8|LR134524.1_1577812_1579021_-	PRK08206, PRK08206, diaminopropionate ammonia-lyase; Provisional	NA|288aa|up_7|LR134524.1_1579217_1580081_-	pfam06207, DUF1002, Protein of unknown function (DUF1002)	NA|199aa|up_6|LR134524.1_1580272_1580869_-	PRK00454, engB, GTP-binding protein YsxC; Reviewed	NA|778aa|up_5|LR134524.1_1580855_1583189_-	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]	NA|406aa|up_4|LR134524.1_1583235_1584453_-	PRK05342, clpX, ATP-dependent Clp protease ATP-binding subunit ClpX	NA|195aa|up_3|LR134524.1_1584461_1585046_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|450aa|up_2|LR134524.1_1585062_1586412_-	PRK01490, tig, trigger factor; Provisional	NA|74aa|up_1|LR134524.1_1586482_1586704_-	COG4443, COG4443, Uncharacterized protein conserved in bacteria [Function unknown]	NA|568aa|up_0|LR134524.1_1586705_1588409_-	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional	cas2|98aa|down_0|LR134524.1_1591944_1592238_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|344aa|down_1|LR134524.1_1592239_1593271_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|218aa|down_2|LR134524.1_1593267_1593921_-	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4	cas7|284aa|down_3|LR134524.1_1593922_1594774_-	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8c|659aa|down_4|LR134524.1_1594766_1596743_-	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas5|235aa|down_5|LR134524.1_1596756_1597461_-	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas3|860aa|down_6|LR134524.1_1597658_1600238_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|313aa|down_7|LR134524.1_1600280_1601219_-	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family	NA|521aa|down_8|LR134524.1_1601370_1602933_+	smart00287, SH3b, Bacterial SH3 domain homologues	NA|189aa|down_9|LR134524.1_1603042_1603609_+	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]
