assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900638345.1_57428_C01	LR134516	Neisseria animaloris strain NCTC12227 genome assembly, chromosome: 1	1	1231419-1231850	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas9,cas1,cas2	csa3,DEDDh,cas9,cas1,cas2,cas3,cas4,cas7,cas8c,cas5,DinG	Type II-C,Type II-A, Type II-B, or Type II-C?,Type II-B	ATTGTAGCACTACGAGATGAGAGAGGAAGCTACAAC,ATTGTAGCACTACGAGATGAGAGAGGAAGCTACAAC,ATTGTAGCACTACGAGATGAGAGAGGAAGCTACAAC	36,36,36	1	1	1231719-1231748	LR134516.1_345525-345554	NA:NA:NA	6,6,6	6	TypeII-C,TypeII-A,TypeII-B,orTypeII-C?,TypeII-B	csa3,DEDDh,cas9,cas1,cas2,cas3,cas4,cas7,cas8c,cas5,DinG	NA,NA|84aa|down_5|LR134516.1_1239843_1240095_+	NA|171aa|up_9|LR134516.1_1220757_1221270_-	COG2867, COG2867, Oligoketide cyclase/lipid transport protein [Lipid metabolism]	NA|140aa|up_8|LR134516.1_1221372_1221792_-	pfam12670, DUF3792, Protein of unknown function (DUF3792)	NA|334aa|up_7|LR134516.1_1221956_1222958_-	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|189aa|up_6|LR134516.1_1222957_1223524_-	COG2980, RlpB, Rare lipoprotein B [Cell envelope biogenesis, outer membrane]	NA|486aa|up_5|LR134516.1_1223603_1225061_-	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]	NA|188aa|up_4|LR134516.1_1225331_1225895_+	COG3477, COG3477, Predicted periplasmic/secreted protein [Function unknown]	NA|115aa|up_3|LR134516.1_1225984_1226329_-	cd06587, VOC, vicinal oxygen chelate (VOC) family	cas9|1079aa|up_2|LR134516.1_1226809_1230046_+	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	cas1|304aa|up_1|LR134516.1_1230124_1231036_+	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas2|103aa|up_0|LR134516.1_1231046_1231355_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	NA|251aa|down_0|LR134516.1_1232014_1232767_-	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]	NA|374aa|down_1|LR134516.1_1232803_1233925_-	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|1045aa|down_2|LR134516.1_1233954_1237089_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|390aa|down_3|LR134516.1_1237254_1238424_-	pfam14281, PDDEXK_4, PD-(D/E)XK nuclease superfamily	NA|282aa|down_4|LR134516.1_1238522_1239368_-	pfam02517, Abi, CAAX protease self-immunity	NA|84aa|down_5|LR134516.1_1239843_1240095_+	NA	NA|381aa|down_6|LR134516.1_1240192_1241335_-	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|289aa|down_7|LR134516.1_1241566_1242433_-	PRK04155, PRK04155, protein deglycase HchA	NA|143aa|down_8|LR134516.1_1242595_1243024_+	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|119aa|down_9|LR134516.1_1243097_1243454_+	pfam14302, DUF4377, Domain of unknown function (DUF4377)
GCA_900638345.1_57428_C01	LR134516	Neisseria animaloris strain NCTC12227 genome assembly, chromosome: 1	2	1889321-1889554	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	csa3,DEDDh,cas9,cas1,cas2,cas3,cas4,cas7,cas8c,cas5,DinG	 Type I-U?,Type I-U,Type I-C	GTTTCAACACACAGCCGCCCGAAGGCGGCTGA,GTTTCAACACACAGCCGCCCGAAGGCGGCTGA,GTTTCAACACACAGCCGCCCGAAGGCGGCTGA	32,32,32	0	0	NA	NA	NA:NA:NA	3,3,3	3	TypeI-U?,TypeI-U,TypeI-C	csa3,DEDDh,cas9,cas1,cas2,cas3,cas4,cas7,cas8c,cas5,DinG	NA|92aa|up_5|LR134516.1_1878841_1879117_-,NA|88aa|down_2|LR134516.1_1891555_1891819_-,NA|208aa|down_4|LR134516.1_1892647_1893271_-	NA|192aa|up_9|LR134516.1_1875944_1876520_-	TIGR02943, RNA_polymerase_sigma-24_subunit_RpoE, RNA polymerase sigma-70 factor, TIGR02943 family	NA|246aa|up_8|LR134516.1_1876618_1877356_-	COG3219, COG3219, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|up_7|LR134516.1_1877342_1878194_-	PRK05409, PRK05409, hypothetical protein; Provisional	NA|121aa|up_6|LR134516.1_1878366_1878729_-	PTZ00303, PTZ00303, phosphatidylinositol kinase; Provisional	NA|92aa|up_5|LR134516.1_1878841_1879117_-	NA	NA|154aa|up_4|LR134516.1_1879215_1879677_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|98aa|up_3|LR134516.1_1880259_1880553_-	TIGR01259, ComE_operon_protein_1, comEA protein	NA|175aa|up_2|LR134516.1_1886881_1887406_-	COG4137, COG4137, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|81aa|up_1|LR134516.1_1887420_1887663_-	COG4137, COG4137, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|457aa|up_0|LR134516.1_1887805_1889176_+	PRK10867, PRK10867, signal recognition particle protein; Provisional	cas2|98aa|down_0|LR134516.1_1889745_1890039_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|338aa|down_1|LR134516.1_1890116_1891130_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	NA|88aa|down_2|LR134516.1_1891555_1891819_-	NA	cas4|202aa|down_3|LR134516.1_1891965_1892571_-	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4	NA|208aa|down_4|LR134516.1_1892647_1893271_-	NA	cas7|288aa|down_5|LR134516.1_1893385_1894249_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8c|596aa|down_6|LR134516.1_1894251_1896039_-	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas5|224aa|down_7|LR134516.1_1896035_1896707_-	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	NA|616aa|down_8|LR134516.1_1896773_1898621_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	cas3|771aa|down_9|LR134516.1_1898684_1900997_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]
GCA_900638345.1_57428_C01	LR134516	Neisseria animaloris strain NCTC12227 genome assembly, chromosome: 1	3	2068961-2069125	3	CRISPRCasFinder	no		csa3,DEDDh,cas9,cas1,cas2,cas3,cas4,cas7,cas8c,cas5,DinG	Orphan	GTTTCAACACACAGCCACCCGAAGGTGGCTGA	32	0	0	NA	NA	NA	2	2	Orphan	csa3,DEDDh,cas9,cas1,cas2,cas3,cas4,cas7,cas8c,cas5,DinG	NA|156aa|up_8|LR134516.1_2060841_2061309_+,NA|108aa|down_1|LR134516.1_2070756_2071080_-,NA|165aa|down_8|LR134516.1_2080581_2081076_+	NA|787aa|up_9|LR134516.1_2058303_2060664_-	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|156aa|up_8|LR134516.1_2060841_2061309_+	NA	NA|213aa|up_7|LR134516.1_2061407_2062046_+	COG0212, COG0212, 5-formyltetrahydrofolate cyclo-ligase [Coenzyme metabolism]	NA|474aa|up_6|LR134516.1_2062208_2063630_+	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism]	NA|310aa|up_5|LR134516.1_2063732_2064662_-	cd08411, PBP2_OxyR, The C-terminal substrate-binding domain of the LysR-type transcriptional regulator OxyR, a member of the type 2 periplasmic binding fold protein superfamily	NA|90aa|up_4|LR134516.1_2064658_2064928_-	PRK13989, PRK13989, cell division topological specificity factor MinE; Provisional	NA|271aa|up_3|LR134516.1_2064931_2065744_-	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]	NA|239aa|up_2|LR134516.1_2065776_2066493_-	PRK04516, minC, septum site-determining protein MinC	NA|285aa|up_1|LR134516.1_2066560_2067415_+	pfam10728, DUF2520, Domain of unknown function (DUF2520)	NA|457aa|up_0|LR134516.1_2067524_2068895_+	PRK09285, PRK09285, adenylosuccinate lyase; Provisional	NA|435aa|down_0|LR134516.1_2069365_2070670_-	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|108aa|down_1|LR134516.1_2070756_2071080_-	NA	NA|186aa|down_2|LR134516.1_2071597_2072155_+	pfam13505, OMP_b-brl, Outer membrane protein beta-barrel domain	NA|252aa|down_3|LR134516.1_2072285_2073041_-	PRK15066, PRK15066, inner membrane transport permease; Provisional	NA|695aa|down_4|LR134516.1_2073125_2075210_-	PRK00133, metG, methionyl-tRNA synthetase; Reviewed	NA|300aa|down_5|LR134516.1_2075407_2076307_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|718aa|down_6|LR134516.1_2076406_2078560_-	TIGR01666, Uncharacterized_protein_HI_1680, TIGR01666 family membrane protein	NA|485aa|down_7|LR134516.1_2078784_2080239_-	pfam04575, DUF560, Protein of unknown function (DUF560)	NA|165aa|down_8|LR134516.1_2080581_2081076_+	NA	NA|98aa|down_9|LR134516.1_2081915_2082209_-	TIGR01259, ComE_operon_protein_1, comEA protein
