The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR134480	Bordetella bronchiseptica strain NCTC8344 genome assembly, chromosome: 1	5207445	876485	925450	5207445	integrase,head,tail,portal,protease,terminase,capsid	Burkholderia_virus(19.35%)	63	886079:886098	925640:925659
VEI25127.1|876485_877337_-|protease	Predicted metalloprotease	protease	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
VEI25128.1|877398_878025_+	translation factor	NA	NA	NA	NA	NA
VEI25129.1|878081_878729_+	membrane-associated peptidase	NA	NA	NA	NA	NA
VEI25130.1|878814_879720_+	dihydrodipicolinate synthase	NA	NA	NA	NA	NA
VEI25131.1|879737_880859_+	lipoprotein	NA	NA	NA	NA	NA
VEI25132.1|880946_881573_-	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
VEI25133.1|881814_882027_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEI25134.1|882307_883495_-	Cupin superfamily protein	NA	NA	NA	NA	NA
VEI25135.1|883491_886089_-	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.4	9.7e-21
886079:886098	attL	TGCTGCATCATGGGAGTATG	NA	NA	NA	NA
VEI25136.1|886145_887135_-|integrase	integrase	integrase	A0A2H4J8E5	uncultured_Caudovirales_phage	54.4	2.3e-95
VEI25137.1|887112_887325_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEI25138.1|887480_888380_-	Uncharacterised protein	NA	A0A2H5BQE8	Pseudomonas_phage	66.2	6.8e-14
VEI25139.1|888376_888526_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEI25140.1|889245_889902_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEI25141.1|889898_890846_-	Uncharacterised protein	NA	A0A0U4JP11	Pseudomonas_phage	39.7	8.1e-42
VEI25142.1|890848_891076_-	phage-related membrane protein	NA	NA	NA	NA	NA
VEI25143.1|891675_892293_-	DnaJ central domain	NA	NA	NA	NA	NA
VEI25144.1|892303_892453_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEI25145.1|892561_892759_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEI25146.1|893105_893837_-	LexA repressor	NA	J7I4M9	Acinetobacter_phage	35.8	1.2e-29
VEI25147.1|893937_894210_+	phage protein	NA	NA	NA	NA	NA
VEI25148.1|894313_894844_+	Uncharacterised protein	NA	B7SYH6	Stenotrophomonas_phage	38.9	4.1e-27
VEI25149.1|895138_895441_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEI25150.1|895437_895926_+	Protein of uncharacterised function (DUF1364)	NA	NA	NA	NA	NA
VEI25151.1|895922_896753_+	phage protein	NA	A0A0R6PKK6	Moraxella_phage	40.2	1.3e-14
VEI25152.1|896736_897435_+	phage protein	NA	F8TUP9	EBPR_podovirus	38.0	8.1e-23
VEI25153.1|897572_897920_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEI25154.1|898063_898321_+	Uncharacterised protein	NA	R9TNL4	Vibrio_phage	53.4	7.5e-19
VEI25155.1|898356_898983_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEI25156.1|899379_899658_-	phage protein	NA	K4NZP3	Burkholderia_phage	60.4	1.3e-08
VEI25157.1|899644_899911_-	phage protein	NA	NA	NA	NA	NA
VEI25158.1|900225_900474_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEI25159.1|900470_900809_+	HNH endonuclease	NA	B5WZZ4	Pseudomonas_phage	56.2	2.6e-27
VEI25160.1|900977_901574_+	Terminase small subunit	NA	A0A076GD11	Sinorhizobium_phage	33.9	1.1e-12
VEI25161.1|901570_903253_+|terminase	Phage terminase-like protein, large subunit	terminase	I7H415	Xanthomonas_virus	42.1	1.8e-116
VEI25162.1|903249_903432_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEI25163.1|903434_904694_+|portal	phage portal protein	portal	Q8W6U7	Burkholderia_virus	57.9	9.1e-142
VEI25164.1|904690_905641_+|protease	Probable protease sohB	protease	A4JX00	Burkholderia_virus	56.2	3.5e-85
VEI25165.1|905704_907030_+|capsid	Predicted phage phi-C31 gp36 major capsid-like protein	capsid	Q8W6U5	Burkholderia_virus	66.7	2.4e-145
VEI25166.1|907092_907260_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEI25167.1|907262_907784_+	Uncharacterised protein	NA	Q8W6U3	Burkholderia_virus	45.3	3.2e-32
VEI25168.1|907785_908124_+|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
VEI25169.1|908116_908548_+	phage protein, HK97 gp10 family	NA	NA	NA	NA	NA
VEI25170.1|908544_908895_+	Protein of uncharacterised function (DUF3168)	NA	Q9MCS8	Enterobacteria_phage	34.5	8.5e-05
VEI25171.1|908957_909422_+	Uncharacterised protein	NA	Q3HQT6	Burkholderia_phage	43.6	9.4e-28
VEI25172.1|909428_909890_+|tail	Phage tail assembly chaperone	tail	NA	NA	NA	NA
VEI25173.1|909889_910183_+	Uncharacterised protein	NA	K7P7L5	Enterobacteria_phage	51.4	1.2e-12
VEI25174.1|910221_913767_+	bacteriophage-related transmembrane protein	NA	K7PH87	Enterobacterial_phage	22.7	3.7e-31
VEI25175.1|913770_914103_+	Phage-related protein	NA	I6PBN7	Cronobacter_phage	40.4	1.2e-16
VEI25176.1|914105_915677_+	Uncharacterised protein	NA	A0A0B5A596	Achromobacter_phage	45.2	9.3e-43
VEI25177.1|915678_916179_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEI25178.1|916178_916925_+|tail	phage minor tail protein L	tail	Q6JIL5	Burkholderia_virus	45.9	7.5e-59
VEI25179.1|916928_917711_+	NlpC/P60 family	NA	Q8W6T2	Burkholderia_virus	47.1	1.2e-59
VEI25180.1|917725_918091_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEI25181.1|918179_918788_+|tail	Phage-related protein, tail component	tail	F1C572	Cronobacter_phage	52.3	3.8e-45
VEI25182.1|918784_922387_+	Domain of uncharacterised function (DUF1983)	NA	A0A2R3UA88	Siphoviridae_environmental_samples	41.2	5.1e-230
VEI25183.1|922391_922808_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEI25184.1|922788_923001_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEI25185.1|923062_923506_+	phage-related membrane protein	NA	A0A0U5LBV3	unidentified_phage	40.0	3.3e-14
VEI25186.1|923502_924051_+	Uncharacterised protein	NA	I6NSS1	Burkholderia_phage	54.1	9.1e-30
VEI25187.1|924219_924435_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEI25188.1|924415_924745_-	centaurin, alpha	NA	NA	NA	NA	NA
VEI25189.1|924796_925450_-	Uncharacterised ACR, COG2135	NA	C7BGE4	Burkholderia_phage	38.3	3.3e-34
925640:925659	attR	TGCTGCATCATGGGAGTATG	NA	NA	NA	NA
>prophage 2
LR134480	Bordetella bronchiseptica strain NCTC8344 genome assembly, chromosome: 1	5207445	1487267	1495330	5207445	protease	Moraxella_phage(28.57%)	9	NA	NA
VEI25697.1|1487267_1487852_+	IMPACT family member yigZ	NA	A0A1X9I5T8	Streptococcus_phage	46.8	2.1e-16
VEI25698.1|1487870_1488254_-	thioredoxin 2	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
VEI25699.1|1488389_1489415_-	luciferase-like monooxygenase	NA	NA	NA	NA	NA
VEI25700.1|1489620_1490913_-	permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
VEI25701.1|1491047_1492088_+|protease	glycoprotease	protease	A0A0R6PI74	Moraxella_phage	51.6	9.3e-92
VEI25702.1|1492132_1492768_-	glycerol-3-phosphate acyltransferase PlsY	NA	NA	NA	NA	NA
VEI25703.1|1492905_1493664_+	stationary-phase survival protein	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	6.2e-69
VEI25704.1|1493648_1494428_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
VEI25705.1|1494445_1495330_+	peptidase	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
