The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR134405	Rodentibacter pneumotropicus strain NCTC8284 genome assembly, chromosome: 1	2439769	239924	245137	2439769	tRNA	Streptomyces_phage(50.0%)	8	NA	NA
VEH65236.1|239924_240179_+	DNA polymerase III subunit alpha	NA	Q8W6C3	Saccharomonospora_phage	40.3	3.2e-06
VEH65237.1|240350_241328_+	DNA polymerase III subunit alpha	NA	A0A0K1Y9G6	Streptomyces_phage	40.9	1.2e-51
VEH65238.1|241285_242146_+	DNA polymerase III subunit alpha	NA	A0A0K1Y8J9	Streptomyces_phage	46.1	1.6e-52
VEH65239.1|242213_243020_+	DNA polymerase III subunit alpha	NA	A0A0K1Y8F0	Streptomyces_phage	36.6	2.3e-29
VEH65240.1|242959_243397_+	DNA polymerase III subunit alpha	NA	NA	NA	NA	NA
VEH65241.1|243490_243586_+	peptide deformylase	NA	NA	NA	NA	NA
VEH65242.1|243591_243999_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.7	1.7e-17
VEH65243.1|244180_245137_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	30.8	2.2e-07
>prophage 2
LR134405	Rodentibacter pneumotropicus strain NCTC8284 genome assembly, chromosome: 1	2439769	355639	363750	2439769		Bacillus_phage(28.57%)	14	NA	NA
VEH65398.1|355639_356398_-	glycosyltransferase	NA	A0A1C3NFH8	Phage_NCTB	35.8	2.8e-05
VEH65399.1|356459_357047_+	3-deoxy-D-manno-octulosonic-acid transferase	NA	NA	NA	NA	NA
VEH65400.1|357024_357741_+	3-deoxy-D-manno-octulosonic-acid transferase	NA	NA	NA	NA	NA
VEH65401.1|357737_358217_+	phosphopantetheine adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	41.3	4.2e-23
VEH65402.1|358204_358432_+	Predicted periplasmic lipoprotein	NA	NA	NA	NA	NA
VEH65403.1|358403_359363_+	ATP-dependent DNA helicase Rep	NA	A7KV33	Bacillus_phage	41.5	2.1e-61
VEH65404.1|359353_359800_+	ATP-dependent DNA helicase Rep	NA	G3MA40	Bacillus_virus	49.2	2.3e-23
VEH65405.1|359817_360423_+	ATP-dependent DNA helicase Rep	NA	A7KV33	Bacillus_phage	37.4	1.6e-19
VEH65406.1|360943_361147_-	metallophosphoesterase	NA	NA	NA	NA	NA
VEH65407.1|361214_361550_-	metallophosphoesterase	NA	NA	NA	NA	NA
VEH65408.1|361513_361636_-	metallophosphoesterase	NA	NA	NA	NA	NA
VEH65409.1|361637_362297_-	transcriptional regulator NadR	NA	A0A0C5K935	Enterococcus_phage	48.6	1.3e-54
VEH65410.1|362455_362665_-	transcriptional regulator NadR	NA	NA	NA	NA	NA
VEH65411.1|363102_363750_+	3,4-dihydroxy-2-butanone 4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	44.9	1.0e-43
>prophage 3
LR134405	Rodentibacter pneumotropicus strain NCTC8284 genome assembly, chromosome: 1	2439769	370121	408396	2439769	tail,head,transposase	Haemophilus_phage(65.38%)	75	NA	NA
VEH65422.1|370121_370400_-	Uncharacterised protein	NA	F6MIM2	Haemophilus_phage	80.4	6.4e-40
VEH65423.1|370468_371734_-	Uncharacterised protein	NA	U4KJA1	Streptococcus_phage	55.9	1.1e-78
VEH65424.1|372025_372487_-	Uncharacterised protein	NA	F6MIM0	Haemophilus_phage	49.6	1.7e-29
VEH65425.1|372479_372671_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH65426.1|372927_373086_-	Uncharacterised protein	NA	F6MIL9	Haemophilus_phage	78.6	2.9e-05
VEH65427.1|373085_374420_-|tail	Phage tail fibre repeat	tail	Q7Y5S2	Haemophilus_phage	36.0	2.5e-20
VEH65428.1|374421_375012_-	Uncharacterized protein conserved in bacteria (DUF2313)	NA	F6MIL7	Haemophilus_phage	69.3	2.1e-72
VEH65429.1|375011_375452_-	Uncharacterized homolog of phage Mu protein gp47	NA	F6MIL6	Haemophilus_phage	63.7	3.9e-47
VEH65430.1|375412_376075_-	Uncharacterized homolog of phage Mu protein gp47	NA	F6MIL6	Haemophilus_phage	68.5	2.7e-68
VEH65431.1|376089_376440_-	Phage protein GP46	NA	A0A0M3LQK5	Mannheimia_phage	73.3	2.1e-43
VEH65432.1|376514_376796_-	Mu-like prophage protein gp45	NA	A0A0M3LPA3	Mannheimia_phage	47.9	8.8e-13
VEH65433.1|376792_377149_-	Mu-like prophage protein gp45	NA	F6MIL4	Haemophilus_phage	69.2	8.2e-40
VEH65434.1|377148_377667_-|tail	Mu-like prophage tail protein gpP	tail	F6MIL3	Haemophilus_phage	71.8	7.0e-56
VEH65435.1|377902_378277_-|tail	Mu-like prophage tail protein gpP	tail	F6MIL3	Haemophilus_phage	68.4	3.0e-40
VEH65436.1|378266_379220_-	Mu-like prophage DNA circulation protein	NA	F6MIL2	Haemophilus_phage	38.8	2.7e-53
VEH65437.1|379605_380121_-	Uncharacterised protein	NA	F6MIL1	Haemophilus_phage	47.4	3.5e-07
VEH65438.1|380108_380954_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH65439.1|380959_382096_-|tail	Phage-related minor tail protein	tail	A0A0M3LPB6	Mannheimia_phage	40.1	1.4e-40
VEH65440.1|382142_382268_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH65441.1|382363_382705_-	Uncharacterised protein	NA	F6MIK9	Haemophilus_phage	37.9	3.1e-12
VEH65442.1|382704_383076_-	Uncharacterised protein	NA	A0A0M3LRV6	Mannheimia_phage	66.7	1.6e-38
VEH65443.1|383085_384501_-|tail	Mu-like prophage tail sheath protein gpL	tail	B7SDP8	Haemophilus_phage	59.8	3.2e-151
VEH65444.1|384493_384673_-	Uncharacterised protein	NA	A0A0M3LQM9	Mannheimia_phage	59.3	2.0e-10
VEH65445.1|384675_385143_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH65446.1|385102_385741_-	Mu-like prophage protein gp37	NA	A0A0M3LQJ7	Mannheimia_phage	47.2	1.5e-47
VEH65447.1|385724_386126_-	Mu-like prophage protein gp36	NA	B7SDP4	Haemophilus_phage	58.0	1.6e-31
VEH65448.1|386155_386401_-	Uncharacterised protein	NA	B7SDP3	Haemophilus_phage	45.5	1.0e-12
VEH65449.1|386606_387089_-|head	Mu-like prophage major head subunit gpT	head	B7SDP1	Haemophilus_phage	73.8	2.5e-63
VEH65450.1|387049_387529_-|head	Mu-like prophage major head subunit gpT	head	B7SDP1	Haemophilus_phage	76.6	4.5e-57
VEH65451.1|387528_387798_-	Mu-like prophage I protein	NA	B7SDN9	Haemophilus_phage	62.8	3.5e-19
VEH65452.1|387785_387920_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH65453.1|387999_388206_-	Mu-like prophage I protein	NA	B7SDN9	Haemophilus_phage	50.7	3.7e-08
VEH65454.1|388163_388568_-	Mu-like prophage I protein	NA	B7SDN9	Haemophilus_phage	67.0	9.7e-37
VEH65455.1|388848_389295_-	Mu-like prophage protein gpG	NA	B7SDN8	Haemophilus_phage	49.3	1.3e-26
VEH65456.1|389409_390156_-	Uncharacterised protein	NA	B7SDN5	Haemophilus_phage	44.3	5.2e-44
VEH65457.1|390152_390353_-|head	phage head morphogenesis protein, SPP1 gp7 family	head	B7SDN5	Haemophilus_phage	67.3	2.3e-15
VEH65458.1|390431_390707_-	Uncharacterised protein	NA	A0A0M3LSH7	Mannheimia_phage	51.3	1.2e-14
VEH65459.1|390693_390984_-	Mu-like prophage protein gp29	NA	B7SDN1	Haemophilus_phage	57.7	6.7e-16
VEH65460.1|390931_391462_-	Mu-like prophage protein gp29	NA	A0A0M3LRU4	Mannheimia_phage	64.1	5.9e-50
VEH65461.1|391425_392334_-	Mu-like prophage protein gp29	NA	B7SDN1	Haemophilus_phage	73.9	2.4e-115
VEH65462.1|392344_393733_-	phage uncharacterized protein, C-terminal domain	NA	B7SDN0	Haemophilus_phage	85.5	9.8e-222
VEH65463.1|393723_393990_-	Uncharacterised protein	NA	B7SDN0	Haemophilus_phage	62.7	1.9e-12
VEH65464.1|393991_394096_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH65465.1|394092_394557_-	Protein of uncharacterised function (DUF1804)	NA	F6MIK6	Haemophilus_phage	48.4	2.3e-34
VEH65466.1|394602_394794_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH65467.1|394867_395125_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH65468.1|395248_395506_-	Protein of uncharacterised function (DUF2681)	NA	NA	NA	NA	NA
VEH65469.1|395505_395697_-	Protein of uncharacterised function (DUF2644)	NA	F6MIK0	Haemophilus_phage	49.0	4.6e-05
VEH65470.1|395941_396445_-	Predicted lysozyme (DUF847)	NA	A0A0M3LSH2	Mannheimia_phage	67.5	5.6e-58
VEH65471.1|396462_396966_-	Uncharacterised protein	NA	A0A0M3LRS6	Mannheimia_phage	46.6	1.3e-19
VEH65472.1|397079_397430_-	Uncharacterised protein	NA	A0A0M3LQH8	Mannheimia_phage	41.2	1.3e-18
VEH65473.1|397489_397894_-	Mu-like prophage protein gp16	NA	A0A0M3LP80	Mannheimia_phage	44.5	4.8e-20
VEH65474.1|397909_398260_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH65475.1|398246_398732_-	Uncharacterised protein	NA	A0A2H4JFV8	uncultured_Caudovirales_phage	40.0	5.1e-24
VEH65476.1|398809_399091_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH65477.1|399124_399391_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH65478.1|399436_399907_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH65479.1|400144_400300_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH65480.1|400296_400524_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH65481.1|400520_400691_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH65482.1|400687_400852_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH65483.1|401105_401726_-	Protein of uncharacterised function (DUF3164)	NA	A0A0M3LQ92	Mannheimia_phage	61.7	7.1e-71
VEH65484.1|401728_401923_-	Uncharacterised protein	NA	F6MII8	Haemophilus_phage	68.3	7.2e-14
VEH65485.1|401932_402142_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH65486.1|402152_403034_-	putative secretion ATPase, PEP-CTERM locus subfamily	NA	A0A0M3LP72	Mannheimia_phage	77.1	6.2e-121
VEH65487.1|403076_403322_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH65488.1|403299_403584_-	Uncharacterised protein	NA	F6MII5	Haemophilus_phage	49.5	1.4e-13
VEH65489.1|403565_403901_-|transposase	Mu transposase, C-terminal	transposase	NA	NA	NA	NA
VEH65490.1|403875_404571_-	Integrase core domain	NA	A0A0M3LPN5	Mannheimia_phage	64.6	1.7e-73
VEH65491.1|404567_405272_-	Mu DNA-binding domain	NA	F6MII5	Haemophilus_phage	55.1	2.5e-48
VEH65492.1|405280_405469_-	phage-associated protein, BcepMu gp16 family	NA	NA	NA	NA	NA
VEH65493.1|405603_406098_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH65494.1|406266_406512_+	putative bacteriophage transcriptional regulator	NA	F6MII3	Haemophilus_phage	39.5	3.0e-09
VEH65495.1|406791_407892_-	xylose transport system permease protein XylH	NA	NA	NA	NA	NA
VEH65496.1|407895_408396_-	xylose import ATP-binding protein XylG	NA	W5SAS9	Pithovirus	27.2	1.9e-05
>prophage 4
LR134405	Rodentibacter pneumotropicus strain NCTC8284 genome assembly, chromosome: 1	2439769	446937	453586	2439769		Escherichia_phage(83.33%)	11	NA	NA
VEH65556.1|446937_447159_+	23S rRNA (uracil-5-)-methyltransferase RumA	NA	A0A1B0RXA1	Streptococcus_phage	40.0	1.4e-08
VEH65557.1|447235_448054_+	GTP pyrophosphokinase	NA	NA	NA	NA	NA
VEH65558.1|448093_449464_+	GTP pyrophosphokinase	NA	NA	NA	NA	NA
VEH65559.1|449477_449834_+	diacylglycerol kinase	NA	NA	NA	NA	NA
VEH65560.1|450048_450660_-	HTH-type transcriptional regulator	NA	A0A077SK06	Escherichia_phage	52.3	3.7e-48
VEH65561.1|450836_450968_+	oxidoreductase	NA	NA	NA	NA	NA
VEH65562.1|451122_451566_+	oxidoreductase	NA	A0A077SLF7	Escherichia_phage	75.3	8.1e-53
VEH65563.1|451562_451739_+	oxidoreductase	NA	A0A077SLF7	Escherichia_phage	75.9	1.2e-15
VEH65564.1|451741_452515_+	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	NA	A0A077SLJ7	Escherichia_phage	55.3	8.8e-71
VEH65565.1|452511_452985_+	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	NA	NA	NA	NA	NA
VEH65566.1|453007_453586_+	putative aldolase class 2 protein	NA	A0A077SK32	Escherichia_phage	56.7	2.7e-56
>prophage 5
LR134405	Rodentibacter pneumotropicus strain NCTC8284 genome assembly, chromosome: 1	2439769	461178	466847	2439769		Streptococcus_phage(28.57%)	9	NA	NA
VEH65580.1|461178_462309_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	44.4	1.1e-56
VEH65581.1|462491_463250_-	tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	33.3	1.9e-30
VEH65582.1|463403_463937_-	3-phenylpropionic acid transporter	NA	NA	NA	NA	NA
VEH65583.1|464160_464565_-	3-phenylpropionic acid transporter	NA	NA	NA	NA	NA
VEH65584.1|464564_465380_-	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	32.1	1.4e-21
VEH65585.1|465447_465687_+	recombination associated protein	NA	A0A0U1SXS1	Pseudomonas_phage	32.9	7.5e-05
VEH65586.1|465673_466126_+	recombination-associated protein rdgC	NA	S4TWL4	Salmonella_phage	51.7	1.2e-30
VEH65587.1|466122_466353_+	recombination-associated protein rdgC	NA	S4TWL4	Salmonella_phage	49.3	4.2e-13
VEH65588.1|466403_466847_-	transmembrane protein	NA	A0A2I7SAW6	Vibrio_phage	56.0	2.5e-38
>prophage 6
LR134405	Rodentibacter pneumotropicus strain NCTC8284 genome assembly, chromosome: 1	2439769	762967	800955	2439769	head,tRNA,integrase,capsid,terminase,protease,tail,portal	uncultured_Caudovirales_phage(52.0%)	62	762525:762541	767267:767283
762525:762541	attL	AAATCGACCGCACTTTT	NA	NA	NA	NA
VEH66048.1|762967_763729_+	DNA topoisomerase III	NA	A0A1X9I6W8	Streptococcus_phage	32.8	4.8e-29
VEH66049.1|763813_764212_+	protein-export membrane protein SecG	NA	NA	NA	NA	NA
VEH66050.1|764525_764834_+|integrase	phage integrase family site-specific recombinase	integrase	H2BDA3	Pseudomonas_phage	35.9	2.6e-10
VEH66051.1|764896_765328_+|integrase	phage integrase family site-specific recombinase	integrase	A0A1V0E8G8	Vibrio_phage	42.9	2.3e-28
VEH66052.1|765342_765729_+|integrase	prophage integrase	integrase	A0A1V0E8G8	Vibrio_phage	41.0	5.3e-24
VEH66053.1|765891_767682_-	phage/plasmid primase, P4 family, C-terminal domain	NA	Q7M2A8	Enterobacteria_phage	38.2	9.2e-79
767267:767283	attR	AAATCGACCGCACTTTT	NA	NA	NA	NA
VEH66054.1|767665_768085_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66055.1|768285_768501_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66056.1|768487_768667_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66057.1|768668_768881_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66058.1|768873_769017_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66059.1|769418_769568_-	DNA polymerase III subunit epsilon	NA	A0A0R6PHP9	Moraxella_phage	57.4	1.1e-06
VEH66060.1|769806_770271_-	DNA polymerase III subunit epsilon	NA	A0A0R6PHP9	Moraxella_phage	47.8	9.4e-36
VEH66061.1|770366_770591_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66062.1|770988_771105_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66063.1|772641_773058_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66064.1|773082_773235_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66065.1|773257_773707_-|terminase	phage D3 terminase family protein	terminase	A0A2H4JB64	uncultured_Caudovirales_phage	73.0	1.4e-57
VEH66066.1|773657_774113_-|terminase	phage D3 terminase family protein	terminase	A0A2H4JB64	uncultured_Caudovirales_phage	52.4	2.9e-37
VEH66067.1|774091_774376_-|terminase	phage D3 terminase family protein	terminase	A0A2H4JB64	uncultured_Caudovirales_phage	81.4	3.0e-37
VEH66068.1|774432_774894_-|terminase	Phage terminase-like protein, large subunit	terminase	A0A2H4JB64	uncultured_Caudovirales_phage	66.1	1.0e-42
VEH66069.1|774984_775119_-|terminase	Phage terminase, small subunit	terminase	A0A2H4JHS3	uncultured_Caudovirales_phage	72.7	5.1e-11
VEH66070.1|775662_775905_-	Uncharacterised protein	NA	A0A2H4JAS8	uncultured_Caudovirales_phage	53.6	8.4e-20
VEH66071.1|775914_776229_-	uncharacterized phage protein (possible DNA packaging)	NA	A0A2H4JD08	uncultured_Caudovirales_phage	48.0	4.3e-16
VEH66072.1|776215_776572_-|head,tail	Bacteriophage head-tail adaptor	head,tail	A0A2H4JHA9	uncultured_Caudovirales_phage	34.5	2.2e-08
VEH66073.1|776555_777179_-|portal	phage portal protein, HK97 family	portal	A0A2H4JFJ9	uncultured_Caudovirales_phage	64.5	3.3e-68
VEH66074.1|777178_777793_-|portal	phage portal protein, HK97 family	portal	A0A2H4JFJ9	uncultured_Caudovirales_phage	61.5	2.0e-65
VEH66075.1|777792_778290_-|head,protease	phage prohead protease, HK97 family	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	66.2	9.1e-45
VEH66076.1|778407_778746_-|capsid	Predicted phage phi-C31 gp36 major capsid-like protein	capsid	A0A2H4JED2	uncultured_Caudovirales_phage	80.4	1.3e-39
VEH66077.1|779147_779573_-|capsid	Predicted phage phi-C31 gp36 major capsid-like protein	capsid	A0A2H4JED2	uncultured_Caudovirales_phage	51.2	1.2e-24
VEH66078.1|779606_779915_-|tail	Phage minor tail protein U	tail	NA	NA	NA	NA
VEH66079.1|780638_782021_+	PTS system sucrose-specific transporter subunit IIBC	NA	NA	NA	NA	NA
VEH66080.1|782178_782478_-	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
VEH66081.1|782477_782939_-	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
VEH66082.1|783081_783171_-	Trp operon repressor	NA	NA	NA	NA	NA
VEH66083.1|783181_783481_-	putative solube lytic murein transglycosylase, SLT domain protein	NA	NA	NA	NA	NA
VEH66084.1|783459_783879_-	putative solube lytic murein transglycosylase, SLT domain protein	NA	NA	NA	NA	NA
VEH66085.1|783931_784372_-	putative solube lytic murein transglycosylase, SLT domain protein	NA	NA	NA	NA	NA
VEH66086.1|784513_784951_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66087.1|785117_785378_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66088.1|785600_785897_-	YciI-like domain protein	NA	NA	NA	NA	NA
VEH66089.1|785907_786390_-	acyl-CoA thioesterase domain protein	NA	NA	NA	NA	NA
VEH66090.1|786389_786791_-	intracellular septation protein A	NA	NA	NA	NA	NA
VEH66091.1|786757_786949_-	intracellular septation protein A	NA	NA	NA	NA	NA
VEH66092.1|787217_787697_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66093.1|788059_788626_+	outer membrane protein OmpW	NA	NA	NA	NA	NA
VEH66094.1|788751_789222_-	phosphoribosylglycinamide formyltransferase	NA	E3SNR5	Prochlorococcus_phage	47.6	7.8e-22
VEH66095.1|789377_789539_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	NA	NA	NA	NA
VEH66096.1|789502_790414_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	M4QRQ6	Synechococcus_phage	45.1	2.9e-57
VEH66097.1|790553_790841_-	Protein of uncharacterised function (DUF406)	NA	NA	NA	NA	NA
VEH66098.1|791044_792370_+	outer membrane protein	NA	NA	NA	NA	NA
VEH66099.1|792438_792978_+	methylated-DNA--protein-cysteine methyltransferase	NA	A0A0G2Y1B6	Acanthamoeba_polyphaga_mimivirus	42.7	8.1e-23
VEH66100.1|792974_793637_+	DNA mismatch repair protein MutH	NA	NA	NA	NA	NA
VEH66101.1|793701_794319_-	membrane protein, MarC family	NA	NA	NA	NA	NA
VEH66102.1|794397_795687_-|tRNA	tRNA(Ile)-lysidine synthase	tRNA	NA	NA	NA	NA
VEH66103.1|795686_796214_-	pyridoxamine kinase	NA	NA	NA	NA	NA
VEH66104.1|796213_796552_-	pyridoxamine kinase	NA	NA	NA	NA	NA
VEH66105.1|796707_797655_-	acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA	NA
VEH66106.1|797745_798054_-	high-affinity zinc uptake system membrane protein ZnuB	NA	NA	NA	NA	NA
VEH66107.1|798041_798530_-	high-affinity zinc uptake system membrane protein ZnuB	NA	NA	NA	NA	NA
VEH66108.1|798529_799366_-	zinc import ATP-binding protein ZnuC	NA	G3M9Y6	Bacillus_virus	26.8	2.2e-14
VEH66109.1|799509_800955_+|protease	metalloprotease	protease	A0A2K9VGT1	Pontimonas_phage	46.9	5.0e-19
>prophage 7
LR134405	Rodentibacter pneumotropicus strain NCTC8284 genome assembly, chromosome: 1	2439769	831044	838727	2439769		unidentified_phage(14.29%)	15	NA	NA
VEH66161.1|831044_832259_+	cysteine desulfurase IscS	NA	H7BUW1	unidentified_phage	36.1	7.4e-32
VEH66162.1|832326_832446_+	iron-sulfur cluster assembly scaffold IscU	NA	NA	NA	NA	NA
VEH66163.1|832415_832709_+	iron-sulfur cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	81.9	3.4e-39
VEH66164.1|832762_832942_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	57.1	5.4e-08
VEH66165.1|832938_833085_+	iron-sulfur cluster assembly protein IscA	NA	NA	NA	NA	NA
VEH66166.1|833102_833621_+	iron-sulfur cluster assembly co-chaperone protein HscB	NA	NA	NA	NA	NA
VEH66167.1|833665_834355_+	Protein of uncharacterised function DUF2625	NA	NA	NA	NA	NA
VEH66168.1|834381_834585_+	iron-sulfur cluster assembly chaperone protein HscA	NA	NA	NA	NA	NA
VEH66169.1|834575_835262_+	iron-sulfur cluster assembly chaperone protein HscA	NA	F2Y2E1	Organic_Lake_phycodnavirus	44.5	1.8e-46
VEH66170.1|835258_835675_+	iron-sulfur cluster assembly chaperone protein HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	44.5	1.5e-21
VEH66171.1|835671_836238_+	iron-sulfur cluster assembly chaperone protein HscA	NA	A0A2H4UVL6	Bodo_saltans_virus	33.9	1.2e-13
VEH66172.1|836324_836666_+	ferredoxin, 2Fe-2S type, ISC system	NA	NA	NA	NA	NA
VEH66173.1|836665_836860_+	FeS assembly protein IscX	NA	NA	NA	NA	NA
VEH66174.1|836965_838060_-	DNA replication and repair protein RecF	NA	NA	NA	NA	NA
VEH66175.1|838061_838727_-	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	5.1e-27
>prophage 8
LR134405	Rodentibacter pneumotropicus strain NCTC8284 genome assembly, chromosome: 1	2439769	1119052	1188596	2439769	tRNA,holin,integrase,capsid,terminase,protease,tail	Mannheimia_phage(49.09%)	122	1175921:1175941	1189813:1189833
VEH66635.1|1119052_1119325_-|integrase	Phage integrase family	integrase	A0A0M3LQJ3	Mannheimia_phage	70.5	4.2e-28
VEH66636.1|1119378_1119780_-	Uncharacterised protein	NA	A0A0M3LQJ3	Mannheimia_phage	61.1	4.0e-43
VEH66637.1|1119785_1120082_-|integrase	Bacteriophage lambda integrase, N-terminal domain	integrase	A0A0M3LQJ3	Mannheimia_phage	62.9	4.5e-23
VEH66638.1|1120331_1120538_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66639.1|1120530_1120689_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66640.1|1120707_1121199_-	Uncharacterised protein	NA	A0A0M3LQH0	Mannheimia_phage	71.5	9.9e-68
VEH66641.1|1121433_1121940_-	pyruvate kinase	NA	Q7Y5X4	Haemophilus_phage	32.8	1.5e-10
VEH66642.1|1122083_1122665_-	Protein of uncharacterised function (DUF551)	NA	A0A0M3LS47	Mannheimia_phage	44.0	7.5e-06
VEH66643.1|1122628_1122895_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66644.1|1122943_1123261_-	Uncharacterised protein	NA	I2GUJ4	Acinetobacter_phage	39.0	1.8e-09
VEH66645.1|1123266_1124061_-	bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase	NA	A0A0M3LPL3	Mannheimia_phage	89.9	5.6e-28
VEH66646.1|1124111_1124987_-	AP2 domain	NA	NA	NA	NA	NA
VEH66647.1|1125063_1125711_-	translocation protein TolB precursor	NA	A0A0M3LP90	Mannheimia_phage	76.5	4.4e-92
VEH66648.1|1125720_1125831_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66649.1|1125915_1126593_-	putative anti-repressor protein	NA	D0UIK6	Aggregatibacter_phage	39.4	5.6e-45
VEH66650.1|1126901_1127099_-	YcfA-like protein	NA	A0A0M4RCZ9	Salmonella_phage	62.5	1.2e-13
VEH66651.1|1127352_1127790_-	Uncharacterised protein	NA	A0A0M4R2Z9	Salmonella_phage	42.2	1.6e-21
VEH66652.1|1128127_1128361_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66653.1|1128323_1128554_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66654.1|1128878_1129817_-	phage recombinase	NA	A0A2H4JAZ0	uncultured_Caudovirales_phage	66.1	7.1e-83
VEH66655.1|1129826_1130144_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66656.1|1130140_1130626_-	Uncharacterised protein	NA	A0A0M3LSK4	Mannheimia_phage	43.9	2.1e-22
VEH66657.1|1130622_1131030_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66658.1|1131278_1131467_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66659.1|1131463_1131565_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66660.1|1131872_1132103_-	Uncharacterised protein	NA	A0A0M3LQL0	Mannheimia_phage	71.0	5.0e-22
VEH66661.1|1132284_1132542_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66662.1|1132606_1133020_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66663.1|1133033_1133174_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66664.1|1133170_1133482_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66665.1|1133478_1134018_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66666.1|1134111_1134879_-	putative bacteriophage transcriptional regulator	NA	Q76H56	Enterobacteria_phage	33.3	1.5e-17
VEH66667.1|1135006_1135192_+	Cro	NA	A0A2H4J1L8	uncultured_Caudovirales_phage	54.1	5.4e-11
VEH66668.1|1135240_1135648_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66669.1|1135746_1135995_+	Uncharacterised protein	NA	A0A0M3LR73	Mannheimia_phage	67.6	2.3e-17
VEH66670.1|1135981_1136098_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66671.1|1136084_1136954_+	Uncharacterised protein	NA	Q7Y5W1	Haemophilus_phage	36.9	6.3e-41
VEH66672.1|1136953_1137370_+	putative replicative DNA helicase	NA	A0A0M3LQC0	Mannheimia_phage	56.5	1.6e-34
VEH66673.1|1137366_1138323_+	putative replicative DNA helicase	NA	A0A0M3LQC0	Mannheimia_phage	51.7	2.4e-86
VEH66674.1|1138369_1138858_+	phage N-6-adenine-methyltransferase	NA	A0A0M3LNW2	Mannheimia_phage	65.1	1.5e-60
VEH66675.1|1138850_1139081_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66676.1|1139110_1139563_+	putative bacteriophage protein	NA	A0A0M3LR84	Mannheimia_phage	78.4	3.9e-63
VEH66677.1|1139588_1139798_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66678.1|1139797_1140088_+	82 prophage-derived uncharacterized protein ybcO	NA	A0A0M3LQ97	Mannheimia_phage	92.4	1.4e-45
VEH66679.1|1140084_1140444_+	Crossover junction endodeoxyribonuclease rusA	NA	A0A0M3LPZ2	Mannheimia_phage	46.4	3.2e-23
VEH66680.1|1140440_1140806_+	Phage antitermination protein Q	NA	NA	NA	NA	NA
VEH66681.1|1140922_1141129_+	Uncharacterized conserved protein	NA	NA	NA	NA	NA
VEH66682.1|1141161_1141314_+	Uncharacterized conserved protein	NA	A0A1S5SAB0	Streptococcus_phage	52.1	3.6e-05
VEH66683.1|1141313_1142075_+	Uncharacterized conserved protein	NA	NA	NA	NA	NA
VEH66684.1|1142384_1143038_+	KilA domain-containing protein	NA	A0A0M3LQ72	Mannheimia_phage	47.5	5.6e-26
VEH66685.1|1143326_1143596_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66686.1|1143654_1143840_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66687.1|1143843_1144209_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66688.1|1144312_1144675_+|holin	phage holin, lambda family	holin	A0A0M3LNX1	Mannheimia_phage	62.4	1.1e-36
VEH66689.1|1144658_1145102_+	lysozyme	NA	A0A068CDE9	Acinetobacter_phage	56.9	8.7e-39
VEH66690.1|1145094_1145607_+	Protein required for the initiation of cell division	NA	Q7Y5U9	Haemophilus_phage	34.9	4.3e-05
VEH66691.1|1145734_1146217_+	Protein of uncharacterised function (DUF1441)	NA	K7PJY2	Enterobacterial_phage	50.9	4.0e-37
VEH66692.1|1146216_1147242_+|terminase	bacteriophage terminase large subunit	terminase	K7PH52	Enterobacterial_phage	69.6	4.1e-132
VEH66693.1|1147199_1148324_+|terminase	bacteriophage terminase large subunit	terminase	A5LH27	Enterobacteria_phage	64.2	1.1e-125
VEH66694.1|1148292_1148550_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66695.1|1148549_1149455_+|capsid	bacteriophage capsid protein	capsid	K7PHM5	Enterobacterial_phage	56.1	4.9e-81
VEH66696.1|1149451_1150624_+|capsid	bacteriophage capsid protein	capsid	Q8VNN6	Enterobacteria_phage	65.4	7.1e-64
VEH66697.1|1150596_1151073_+|protease	putative Clp-like protease	protease	A0A1B0YZU0	Pseudomonas_phage	35.3	6.5e-16
VEH66698.1|1151069_1151648_+|protease	putative Clp-like protease	protease	A0A1W6JT88	Pseudomonas_phage	67.1	5.8e-59
VEH66699.1|1151647_1152031_+|protease	putative Clp-like protease	protease	A5LH30	Enterobacteria_phage	52.3	2.3e-27
VEH66700.1|1152045_1152420_+	Uncharacterized conserved protein	NA	S5MQJ5	Escherichia_phage	41.8	2.6e-12
VEH66701.1|1152534_1152711_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66702.1|1152931_1153237_+|tail	putative tail component of prophage	tail	K7PMB7	Enterobacterial_phage	42.0	2.1e-12
VEH66703.1|1153267_1153648_+|tail	putative minor tail protein	tail	NA	NA	NA	NA
VEH66704.1|1153586_1154156_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66705.1|1154412_1154574_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66706.1|1154570_1154981_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66707.1|1155025_1155253_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66708.1|1155322_1155619_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VEH66709.1|1155687_1155990_+	Antitoxin HigA	NA	NA	NA	NA	NA
VEH66710.1|1156022_1156271_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66711.1|1156325_1158440_+|tail	Phage-related minor tail protein	tail	B7SE05	Pseudomonas_virus	44.0	3.6e-50
VEH66712.1|1158445_1159015_+|tail	Lambda phage tail tape-measure protein (Tape_meas_lam_C)	tail	NA	NA	NA	NA
VEH66713.1|1159014_1159599_+|tail	Phage-related minor tail protein	tail	G5DMI4	Enterobacter_virus	36.5	1.9e-17
VEH66714.1|1159733_1159841_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66715.1|1159843_1160095_+	Gifsy-1 prophage VmtM	NA	NA	NA	NA	NA
VEH66716.1|1160168_1160894_+|tail	Phage-related minor tail protein L	tail	A0A0M3LSQ5	Mannheimia_phage	62.5	3.7e-71
VEH66717.1|1160886_1161624_+	(3R)-hydroxymyristoyl-ACP dehydratase	NA	A0A0M3LQI5	Mannheimia_phage	65.4	8.9e-89
VEH66718.1|1161869_1162031_+	Uncharacterised protein	NA	A0A0M3LPX2	Mannheimia_phage	64.0	5.2e-10
VEH66719.1|1162172_1162358_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66720.1|1162510_1162753_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66721.1|1163369_1164035_+	KilA domain-containing protein	NA	D0UIK6	Aggregatibacter_phage	60.7	5.3e-32
VEH66722.1|1164162_1164693_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66723.1|1164784_1165141_+|tail	Phage-related protein, tail component	tail	A0A0M3LQ39	Mannheimia_phage	57.3	6.5e-29
VEH66724.1|1165137_1165413_+|tail	Phage-related protein, tail component	tail	A0A0M3LQ39	Mannheimia_phage	75.3	3.4e-25
VEH66725.1|1165663_1166917_+	Uncharacterised protein	NA	A0A0M3LR06	Mannheimia_phage	59.3	3.9e-137
VEH66726.1|1166919_1168500_+	Uncharacterised protein	NA	A0A0M3LQ61	Mannheimia_phage	58.1	4.3e-149
VEH66727.1|1168490_1168850_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66728.1|1168885_1169425_+	Uncharacterised protein	NA	A0A0M3LR06	Mannheimia_phage	64.4	1.3e-07
VEH66729.1|1169418_1169817_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66730.1|1169913_1170207_+	Uncharacterised protein	NA	A0A0M3LS64	Mannheimia_phage	78.4	7.0e-37
VEH66731.1|1170245_1170593_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66732.1|1171030_1171333_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66733.1|1171505_1171670_+|tRNA	tRNA pseudouridine synthase A	tRNA	NA	NA	NA	NA
VEH66734.1|1171716_1172352_+|tRNA	tRNA pseudouridine synthase A	tRNA	NA	NA	NA	NA
VEH66735.1|1172436_1172964_+	acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	NA	NA	NA	NA	NA
VEH66736.1|1172963_1173356_+	acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	NA	NA	NA	NA	NA
VEH66737.1|1173342_1173939_+	folylpolyglutamate synthase	NA	NA	NA	NA	NA
VEH66738.1|1173935_1174661_+	folylpolyglutamate synthase	NA	NA	NA	NA	NA
VEH66739.1|1174867_1175029_-	YbhB/YbcL family protein	NA	NA	NA	NA	NA
VEH66740.1|1175210_1175366_-	YbhB/YbcL family protein	NA	NA	NA	NA	NA
1175921:1175941	attL	CTACTAAACGTACTACTAAAA	NA	NA	NA	NA
VEH66741.1|1176820_1176985_-	Protein of uncharacterised function (DUF497)	NA	NA	NA	NA	NA
VEH66742.1|1177515_1179708_-	Superfamily II helicase and inactivated derivatives	NA	A0A1W6JPG0	Morganella_phage	41.1	2.9e-127
VEH66743.1|1179700_1180507_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66744.1|1180499_1180721_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66745.1|1180713_1180944_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66746.1|1181320_1181560_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66747.1|1183109_1183580_-	Phage anti-repressor protein	NA	NA	NA	NA	NA
VEH66748.1|1183766_1183880_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66749.1|1183891_1184569_-	putative phage regulatory protein Rha family	NA	A0A0H4IQ68	Shigella_phage	38.4	2.4e-27
VEH66750.1|1184990_1185389_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66751.1|1185393_1185624_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66752.1|1185620_1185788_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66753.1|1185969_1186164_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66754.1|1186301_1186568_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH66755.1|1186577_1186817_-	Predicted transcriptional regulator	NA	NA	NA	NA	NA
VEH66756.1|1188344_1188596_-|integrase	prophage integrase	integrase	A0A1V0E8G8	Vibrio_phage	47.3	2.1e-13
1189813:1189833	attR	CTACTAAACGTACTACTAAAA	NA	NA	NA	NA
>prophage 9
LR134405	Rodentibacter pneumotropicus strain NCTC8284 genome assembly, chromosome: 1	2439769	1398788	1439379	2439769	head,tRNA,protease,transposase,tail	Haemophilus_phage(59.57%)	86	NA	NA
VEH67098.1|1398788_1399409_-|protease	putative Lon protease	protease	NA	NA	NA	NA
VEH67099.1|1399799_1400318_-	putative transcriptional regulator	NA	F6MII3	Haemophilus_phage	38.2	7.1e-24
VEH67100.1|1400599_1400863_+	protein Ner	NA	F6MII4	Haemophilus_phage	72.4	1.1e-28
VEH67101.1|1400989_1401598_+	Uncharacterised protein	NA	F6MII5	Haemophilus_phage	53.2	2.2e-48
VEH67102.1|1401573_1402644_+|transposase	Mu transposase, C-terminal	transposase	F6MII5	Haemophilus_phage	80.5	3.3e-169
VEH67103.1|1402588_1402819_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH67104.1|1402840_1403053_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH67105.1|1403042_1403399_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH67106.1|1403449_1403914_+	Uncharacterised protein	NA	A0A0M3LP72	Mannheimia_phage	56.6	2.2e-40
VEH67107.1|1403943_1404330_+	Uncharacterised protein	NA	A0A0M3LP72	Mannheimia_phage	68.5	1.1e-40
VEH67108.1|1404340_1404592_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH67109.1|1404602_1404812_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH67110.1|1404821_1405013_+	Uncharacterised protein	NA	F6MII8	Haemophilus_phage	65.1	5.4e-14
VEH67111.1|1405128_1405635_+	Protein of uncharacterised function (DUF3164)	NA	A0A0M3LQ92	Mannheimia_phage	63.0	1.4e-56
VEH67112.1|1405636_1405831_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH67113.1|1405903_1406074_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH67114.1|1406339_1406510_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH67115.1|1406512_1406797_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH67116.1|1407208_1407595_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH67117.1|1407703_1408189_+	Uncharacterised protein	NA	A0A2H4JFV8	uncultured_Caudovirales_phage	41.2	7.1e-26
VEH67118.1|1408285_1408549_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH67119.1|1409029_1409212_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH67120.1|1409237_1409435_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH67121.1|1409560_1409713_+	Predicted lysozyme (DUF847)	NA	A0A0M3LSH2	Mannheimia_phage	83.3	5.4e-09
VEH67122.1|1409716_1410061_+	Predicted Peptidoglycan domain	NA	A0A0M3LSH2	Mannheimia_phage	64.6	4.0e-23
VEH67123.1|1410215_1410431_+	Protein of uncharacterised function (DUF2644)	NA	F6MIK0	Haemophilus_phage	58.9	1.6e-09
VEH67124.1|1410516_1410906_+	Protein of uncharacterised function (DUF2681)	NA	F6MIK2	Haemophilus_phage	54.4	1.2e-07
VEH67125.1|1410895_1411060_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH67126.1|1411144_1411378_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH67127.1|1411379_1411679_+	Protein of uncharacterised function (DUF1804)	NA	F6MIK6	Haemophilus_phage	56.7	6.9e-24
VEH67128.1|1411675_1411882_+	Protein of uncharacterised function (DUF1804)	NA	F6MIK6	Haemophilus_phage	51.5	1.9e-12
VEH67129.1|1411878_1411983_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH67130.1|1412348_1413611_+	phage uncharacterized protein, C-terminal domain	NA	B7SDN0	Haemophilus_phage	83.9	6.7e-201
VEH67131.1|1413621_1415181_+	Mu-like prophage protein gp29	NA	B7SDN1	Haemophilus_phage	65.8	1.2e-186
VEH67132.1|1415247_1415535_+	Uncharacterised protein	NA	A0A0M3LSH7	Mannheimia_phage	57.5	8.7e-16
VEH67133.1|1415625_1416453_+|head	phage head morphogenesis protein, SPP1 gp7 family	head	A0A0M3LSH7	Mannheimia_phage	63.8	4.6e-94
VEH67134.1|1416607_1416814_+	Mu-like prophage protein gpG	NA	NA	NA	NA	NA
VEH67135.1|1416860_1417058_+	Mu-like prophage protein gpG	NA	B7SDN8	Haemophilus_phage	76.9	9.5e-22
VEH67136.1|1417343_1417673_+	Mu-like prophage I protein	NA	NA	NA	NA	NA
VEH67137.1|1418004_1418397_+	Mu-like prophage I protein	NA	B7SDN9	Haemophilus_phage	43.4	2.8e-17
VEH67138.1|1418462_1418693_+|head	Mu-like prophage major head subunit gpT	head	A0A0M3LQ11	Mannheimia_phage	67.3	1.2e-15
VEH67139.1|1418820_1419303_+|head	Mu-like prophage major head subunit gpT	head	B7SDP1	Haemophilus_phage	74.4	1.0e-64
VEH67140.1|1419559_1419724_+	Uncharacterised protein	NA	B7SDP3	Haemophilus_phage	55.8	1.5e-09
VEH67141.1|1419727_1420435_+	Mu-like prophage protein gp36	NA	B7SDP4	Haemophilus_phage	62.8	2.7e-34
VEH67142.1|1420771_1421206_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH67143.1|1421208_1421337_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH67144.1|1421381_1421612_+|tail	Mu-like prophage tail sheath protein gpL	tail	A0A0M3LQC3	Mannheimia_phage	63.5	2.6e-15
VEH67145.1|1421611_1421749_+|tail	Mu-like prophage tail sheath protein gpL	tail	A0A0M3LQC3	Mannheimia_phage	62.2	2.1e-07
VEH67146.1|1421748_1422150_+|tail	Mu-like prophage tail sheath protein gpL	tail	B7SDP8	Haemophilus_phage	52.8	8.1e-28
VEH67147.1|1422137_1422794_+|tail	Mu-like prophage tail sheath protein gpL	tail	B7SDP8	Haemophilus_phage	65.6	5.3e-77
VEH67148.1|1422803_1423100_+	Uncharacterised protein	NA	A0A0M3LRV6	Mannheimia_phage	64.8	3.0e-27
VEH67149.1|1423173_1423515_+	Uncharacterised protein	NA	F6MIK9	Haemophilus_phage	40.6	1.7e-13
VEH67150.1|1423562_1423736_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH67151.1|1423781_1424312_+	Uncharacterised protein	NA	A0A0M3LPB6	Mannheimia_phage	54.3	1.4e-14
VEH67152.1|1424308_1424557_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH67153.1|1424949_1425063_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH67154.1|1425074_1425428_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH67155.1|1425472_1425631_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH67156.1|1425786_1426137_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH67157.1|1426139_1426355_+	Mu-like prophage DNA circulation protein	NA	A0A0M3LQ21	Mannheimia_phage	71.0	1.0e-21
VEH67158.1|1426357_1426483_+	Mu-like prophage DNA circulation protein	NA	F6MIL2	Haemophilus_phage	56.1	4.2e-07
VEH67159.1|1426678_1426957_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH67160.1|1427006_1427210_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH67161.1|1427206_1427485_+	Mu-like prophage DNA circulation protein	NA	F6MIL2	Haemophilus_phage	62.1	9.9e-25
VEH67162.1|1427474_1428299_+|tail	Mu-like prophage tail protein gpP	tail	F6MIL3	Haemophilus_phage	69.2	1.8e-101
VEH67163.1|1428420_1428654_+|tail	Mu-like prophage tail protein gpP	tail	F6MIL3	Haemophilus_phage	82.4	3.2e-08
VEH67164.1|1428601_1429237_+	Mu-like prophage protein gp45	NA	A0A0M3LPA3	Mannheimia_phage	58.7	1.0e-64
VEH67165.1|1429305_1429656_+	Phage protein GP46	NA	A0A0M3LQK5	Mannheimia_phage	73.3	2.1e-43
VEH67166.1|1429670_1430735_+	Uncharacterized homolog of phage Mu protein gp47	NA	F6MIL6	Haemophilus_phage	65.5	2.3e-125
VEH67167.1|1430734_1431325_+	Uncharacterized protein conserved in bacteria (DUF2313)	NA	F6MIL7	Haemophilus_phage	68.3	5.1e-71
VEH67168.1|1431326_1431803_+|tail	Phage tail fibre repeat	tail	NA	NA	NA	NA
VEH67169.1|1431912_1432560_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH67170.1|1432937_1433216_+	Uncharacterised protein	NA	D0UIH3	Aggregatibacter_phage	51.1	1.4e-18
VEH67171.1|1433215_1433530_+	Uncharacterised protein	NA	Q7Y5S1	Haemophilus_phage	62.4	1.6e-26
VEH67172.1|1433475_1433823_+	Uncharacterised protein	NA	A0A0R6PGZ9	Moraxella_phage	54.8	2.6e-30
VEH67173.1|1433815_1434295_+	Uncharacterised protein	NA	F6MIM0	Haemophilus_phage	56.0	4.1e-50
VEH67174.1|1434601_1434751_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH67175.1|1434867_1435365_+	Uncharacterised protein	NA	U4KJA1	Streptococcus_phage	48.3	4.7e-41
VEH67176.1|1435398_1435995_+	Uncharacterised protein	NA	F6MIM2	Haemophilus_phage	57.4	1.1e-60
VEH67177.1|1436242_1436467_-|protease	putative Lon protease	protease	NA	NA	NA	NA
VEH67178.1|1436557_1437490_-|protease	putative Lon protease	protease	NA	NA	NA	NA
VEH67179.1|1437618_1438065_+	Ter macrodomain organiser, MatS-binding protein, MatP	NA	NA	NA	NA	NA
VEH67180.1|1438149_1438293_-	Cold shock protein	NA	NA	NA	NA	NA
VEH67181.1|1438443_1438761_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VEH67182.1|1438849_1439134_-|tRNA	tRNA pseudouridine synthase C	tRNA	NA	NA	NA	NA
VEH67183.1|1439130_1439379_-|tRNA	tRNA pseudouridine synthase C	tRNA	NA	NA	NA	NA
>prophage 10
LR134405	Rodentibacter pneumotropicus strain NCTC8284 genome assembly, chromosome: 1	2439769	1497900	1508825	2439769		Mannheimia_phage(36.36%)	23	NA	NA
VEH67287.1|1497900_1499433_-	Uncharacterised protein	NA	A0A2I7RSU1	Vibrio_phage	33.1	2.4e-64
VEH67288.1|1499410_1499941_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH67289.1|1499930_1500203_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH67290.1|1500639_1501077_-	Phage antitermination protein Q	NA	NA	NA	NA	NA
VEH67291.1|1501069_1501627_-	Bacteriophage Lambda NinG protein	NA	D0UIK8	Aggregatibacter_phage	63.9	8.3e-63
VEH67292.1|1501623_1502049_-	putative recombination protein NinB	NA	Q7Y5V7	Haemophilus_phage	77.3	7.2e-59
VEH67293.1|1502048_1502270_-	putative replicative DNA helicase	NA	I6R0N4	Salmonella_phage	49.4	4.2e-10
VEH67294.1|1502335_1502752_-	putative replicative DNA helicase	NA	A0A0M3LQC0	Mannheimia_phage	45.8	1.1e-24
VEH67295.1|1502700_1503414_-	putative replicative DNA helicase	NA	A0A0M3LQC0	Mannheimia_phage	51.8	1.7e-60
VEH67296.1|1503413_1503566_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH67297.1|1503522_1503762_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH67298.1|1503713_1504301_-	Uncharacterised protein	NA	Q7Y5W1	Haemophilus_phage	50.9	3.3e-25
VEH67299.1|1504287_1504386_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH67300.1|1504372_1504558_-	Uncharacterised protein	NA	A0A0M3LR73	Mannheimia_phage	63.6	7.8e-10
VEH67301.1|1504779_1505178_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH67302.1|1505287_1505446_-	Uncharacterised protein	NA	Q7Y5W3	Haemophilus_phage	64.6	2.3e-10
VEH67303.1|1505466_1505667_-	Uncharacterized protein conserved in bacteria, prophage-related	NA	NA	NA	NA	NA
VEH67304.1|1505817_1506483_+	putative bacteriophage transcriptional regulator	NA	A0A0M3LQ62	Mannheimia_phage	60.5	5.8e-47
VEH67305.1|1506601_1506799_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH67306.1|1506798_1507305_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH67307.1|1507539_1507968_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH67308.1|1508011_1508317_+	Site-specific DNA methylase	NA	NA	NA	NA	NA
VEH67309.1|1508486_1508825_+	Site-specific DNA methylase	NA	A0A2K9R7J9	Dishui_lake_phycodnavirus	26.4	8.7e-07
>prophage 11
LR134405	Rodentibacter pneumotropicus strain NCTC8284 genome assembly, chromosome: 1	2439769	1586044	1591650	2439769	protease	uncultured_Mediterranean_phage(16.67%)	7	NA	NA
VEH67438.1|1586044_1587436_+|protease	periplasmic serine protease do/hhoA-like protein	protease	A0A1B1IT49	uncultured_Mediterranean_phage	30.0	2.5e-23
VEH67439.1|1587582_1587999_+	DNA gyrase subunit A	NA	A0A172JHV7	Bacillus_phage	47.9	1.2e-26
VEH67440.1|1588043_1589756_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	29.6	1.0e-58
VEH67441.1|1589764_1590223_+	DNA gyrase subunit A	NA	NA	NA	NA	NA
VEH67442.1|1590628_1591018_+	7-cyano-7-deazaguanine synthase	NA	M1PKZ7	Cellulophaga_phage	53.3	9.4e-13
VEH67443.1|1591067_1591310_+	7-cyano-7-deazaguanine synthase	NA	A5A3S4	Burkholderia_phage	42.0	3.2e-11
VEH67444.1|1591302_1591650_+	6-carboxy-5,6,7,8-tetrahydropterin synthase	NA	A0A1U9WRB3	Streptococcus_virus	41.8	8.1e-16
>prophage 12
LR134405	Rodentibacter pneumotropicus strain NCTC8284 genome assembly, chromosome: 1	2439769	1666342	1672723	2439769		Streptococcus_phage(33.33%)	8	NA	NA
VEH67568.1|1666342_1667164_+	gamma-glutamyl phosphate reductase	NA	A0A1X9I5D4	Streptococcus_phage	44.5	4.7e-54
VEH67569.1|1667160_1667595_+	gamma-glutamyl phosphate reductase	NA	A0A1X9I5D4	Streptococcus_phage	50.4	4.4e-27
VEH67570.1|1667659_1668337_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH67571.1|1668363_1669020_-	catalase	NA	A0A2K9L572	Tupanvirus	47.3	1.3e-19
VEH67572.1|1668995_1669883_-	catalase	NA	A0A2K9L0T1	Tupanvirus	47.2	2.7e-71
VEH67573.1|1670048_1670651_-	DNA polymerase III subunit gamma/tau	NA	NA	NA	NA	NA
VEH67574.1|1670650_1672168_-	DNA polymerase III subunit gamma/tau	NA	A0A1L2BWV7	Bacteriophage	37.1	1.9e-45
VEH67575.1|1672180_1672723_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	42.5	8.7e-25
>prophage 13
LR134405	Rodentibacter pneumotropicus strain NCTC8284 genome assembly, chromosome: 1	2439769	1776674	1783379	2439769		Bacillus_virus(33.33%)	8	NA	NA
VEH67735.1|1776674_1777397_-	bifunctional protein HldE	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	33.1	3.5e-21
VEH67736.1|1777393_1778104_-	bifunctional protein HldE	NA	E3SJ85	Synechococcus_phage	27.5	5.3e-06
VEH67737.1|1778202_1778895_+	lipid A biosynthesis lauroyl acyltransferase	NA	A0A1W6JP29	Morganella_phage	43.2	4.2e-40
VEH67738.1|1779197_1779440_+	DNA topoisomerase IV subunit B	NA	NA	NA	NA	NA
VEH67739.1|1779385_1780804_+	DNA topoisomerase IV subunit B	NA	A0A172JHT4	Bacillus_phage	34.5	8.9e-69
VEH67740.1|1780913_1781108_+	DNA topoisomerase IV subunit B	NA	NA	NA	NA	NA
VEH67741.1|1781121_1782117_+	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	40.1	1.9e-62
VEH67742.1|1782119_1783379_+	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	31.8	2.4e-17
>prophage 14
LR134405	Rodentibacter pneumotropicus strain NCTC8284 genome assembly, chromosome: 1	2439769	2092593	2098960	2439769	tRNA	Vibrio_phage(42.86%)	14	NA	NA
VEH68211.1|2092593_2092860_-	ribonuclease 3	NA	A0A2P0VNZ5	Tetraselmis_virus	52.8	6.9e-07
VEH68212.1|2092922_2093315_-	signal peptidase I	NA	NA	NA	NA	NA
VEH68213.1|2093495_2093840_-	signal peptidase I	NA	NA	NA	NA	NA
VEH68214.1|2093999_2094131_-	GTP-binding protein lepA	NA	NA	NA	NA	NA
VEH68215.1|2094118_2094379_-	GTP-binding protein lepA	NA	NA	NA	NA	NA
VEH68216.1|2094348_2094630_-	GTP-binding protein lepA	NA	NA	NA	NA	NA
VEH68217.1|2094605_2095730_-	GTP-binding protein lepA	NA	A0A2K9L2P9	Tupanvirus	42.6	4.0e-24
VEH68218.1|2095826_2096210_-	autonomous glycyl radical cofactor	NA	A0A1W5N098	Cronobacter_phage	68.3	2.2e-30
VEH68219.1|2096442_2096961_+	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	46.8	9.5e-37
VEH68220.1|2097188_2097557_+	protein YyaQ	NA	NA	NA	NA	NA
VEH68221.1|2097726_2098101_-|tRNA	tRNA-specific adenosine deaminase	tRNA	NA	NA	NA	NA
VEH68222.1|2098110_2098482_-	thymidylate synthase	NA	H9EB68	Vibrio_phage	79.7	1.4e-53
VEH68223.1|2098436_2098652_-	thymidylate synthase	NA	K7R9G0	Vibrio_phage	72.9	1.0e-13
VEH68224.1|2098774_2098960_-	thymidylate synthase	NA	H9EB68	Vibrio_phage	74.5	1.0e-17
>prophage 15
LR134405	Rodentibacter pneumotropicus strain NCTC8284 genome assembly, chromosome: 1	2439769	2196848	2203514	2439769		uncultured_Mediterranean_phage(57.14%)	10	NA	NA
VEH68372.1|2196848_2197805_-	UvrABC system protein A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	64.9	2.6e-117
VEH68373.1|2197833_2198268_-	UvrABC system protein A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	62.2	5.7e-43
VEH68374.1|2198333_2198636_-	UvrABC system protein A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.3	2.9e-09
VEH68375.1|2198638_2199676_-	UvrABC system protein A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	52.9	5.8e-102
VEH68376.1|2199831_2200335_+	single-stranded DNA-binding protein	NA	F8TUL2	EBPR_podovirus	52.7	2.5e-42
VEH68377.1|2200648_2201143_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH68378.1|2201251_2202271_-	Cell wall-associated polypeptide CWBP200	NA	A0A2H4JFP5	uncultured_Caudovirales_phage	34.2	5.1e-26
VEH68379.1|2202382_2202562_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH68380.1|2202564_2202753_-	NC domain	NA	NA	NA	NA	NA
VEH68381.1|2202833_2203514_-	Cell wall-associated polypeptide CWBP200	NA	A0A2H4JFP5	uncultured_Caudovirales_phage	35.6	1.1e-32
>prophage 16
LR134405	Rodentibacter pneumotropicus strain NCTC8284 genome assembly, chromosome: 1	2439769	2235721	2243906	2439769		Bacillus_phage(42.86%)	11	NA	NA
VEH68427.1|2235721_2236657_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.4	8.8e-57
VEH68428.1|2236896_2237382_+	dihydrofolate reductase	NA	A0A0S2MU93	Bacillus_phage	45.6	2.7e-17
VEH68429.1|2237292_2237979_-	chaperone protein ClpB	NA	H6X3M6	Enterobacteria_phage	43.2	1.3e-44
VEH68430.1|2237924_2238491_-	chaperone protein ClpB	NA	A0A223W0B1	Agrobacterium_phage	41.5	1.5e-11
VEH68431.1|2238528_2239908_-	chaperone protein ClpB	NA	K4FB40	Cronobacter_phage	51.3	4.1e-71
VEH68432.1|2239998_2240271_-	putative 5-formyltetrahydrofolate cyclo-ligase-family protein	NA	NA	NA	NA	NA
VEH68433.1|2240278_2240563_-	putative 5-formyltetrahydrofolate cyclo-ligase-family protein	NA	NA	NA	NA	NA
VEH68434.1|2240860_2241157_-	cell division protein ZapA	NA	NA	NA	NA	NA
VEH68435.1|2241313_2242606_+	DNA polymerase I	NA	U5PWU8	Bacillus_phage	30.3	5.9e-27
VEH68436.1|2242578_2242893_+	DNA polymerase I	NA	NA	NA	NA	NA
VEH68437.1|2242862_2243906_+	DNA polymerase I	NA	A0A142F1Q9	Bacillus_phage	36.7	3.1e-42
>prophage 17
LR134405	Rodentibacter pneumotropicus strain NCTC8284 genome assembly, chromosome: 1	2439769	2339126	2344803	2439769	protease	Bacillus_virus(50.0%)	10	NA	NA
VEH68595.1|2339126_2339297_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	52.0	3.9e-08
VEH68596.1|2339314_2339428_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	65.7	2.4e-06
VEH68597.1|2339427_2340315_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	59.1	8.5e-86
VEH68598.1|2340350_2340905_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	62.7	7.5e-56
VEH68599.1|2341018_2341498_-	trigger factor	NA	NA	NA	NA	NA
VEH68600.1|2341482_2342316_-	trigger factor	NA	NA	NA	NA	NA
VEH68601.1|2342591_2342972_-	peptidoglycan-binding Lysin subgroup family protein	NA	NA	NA	NA	NA
VEH68602.1|2343138_2343969_+	protein YpfJ	NA	A0A1I9SA48	Rhodococcus_phage	38.2	2.4e-34
VEH68603.1|2344015_2344702_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	36.9	1.4e-22
VEH68604.1|2344698_2344803_-|protease	ATP-dependent protease ATPase subunit HslU	protease	NA	NA	NA	NA
