assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900637775.1_52592_D02	LR134400	Listeria monocytogenes strain NCTC7974 genome assembly, plasmid: 3	1	283490-285574	1,1,1,2	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	csn2,cas2,cas1,cas9	WYL,csa3,csn2,cas2,cas1,cas9	Type II-B,Type II-C,Type II-A	GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC,GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC,GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC,AGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	36,36,36,37	4	4	285244-285274|285311-285340|285377-285406|285377-285405	LR134403.1_212008-211978|LR134403.1_218230-218259|LR134403.1_217532-217503|LR134403.1_217532-217504	II-A,II-B:II-A,II-B:II-A,II-B:II-A,II-B	31,31,25,25	31	TypeII-B,TypeII-C,TypeII-A	WYL,csa3,csn2,cas2,cas1,cas9,DinG,cas3,casR,DEDDh	NA|120aa|up_0|LR134400.1_282582_282942_-,NA|160aa|down_4|LR134400.1_292073_292553_-	NA|159aa|up_9|LR134400.1_265187_265664_-	COG2427, COG2427, Uncharacterized conserved protein [Function unknown]	NA|996aa|up_8|LR134400.1_265663_268651_-	COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General function prediction only]	NA|281aa|up_7|LR134400.1_269149_269992_+	COG1912, COG1912, Uncharacterized conserved protein [Function unknown]	NA|494aa|up_6|LR134400.1_270039_271521_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|296aa|up_5|LR134400.1_271621_272509_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|343aa|up_4|LR134400.1_278300_279329_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|509aa|up_3|LR134400.1_279597_281124_+	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]	NA|284aa|up_2|LR134400.1_281165_282017_-	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR)	NA|141aa|up_1|LR134400.1_282038_282461_-	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|120aa|up_0|LR134400.1_282582_282942_-	NA	csn2|232aa|down_0|LR134400.1_285702_286398_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|114aa|down_1|LR134400.1_286354_286696_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|289aa|down_2|LR134400.1_286692_287559_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1338aa|down_3|LR134400.1_287559_291573_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|160aa|down_4|LR134400.1_292073_292553_-	NA	NA|131aa|down_5|LR134400.1_292777_293170_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|146aa|down_6|LR134400.1_293191_293629_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|249aa|down_7|LR134400.1_293823_294570_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|266aa|down_8|LR134400.1_294575_295373_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|289aa|down_9|LR134400.1_295375_296242_-	PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional
GCA_900637775.1_52592_D02	LR134400	Listeria monocytogenes strain NCTC7974 genome assembly, plasmid: 3	2	388221-388331	2	CRISPRCasFinder	no		WYL,csa3,csn2,cas2,cas1,cas9	Orphan	AGCGATGATTTAATCCTTCCCAGAACTTTCAAAA	34	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,csn2,cas2,cas1,cas9,DinG,cas3,casR,DEDDh	NA,NA|74aa|down_2|LR134400.1_389100_389322_-,NA|52aa|down_4|LR134400.1_391263_391419_+,NA|214aa|down_5|LR134400.1_391451_392093_-,NA|32aa|down_6|LR134400.1_392637_392733_-	NA|330aa|up_9|LR134400.1_380146_381136_+	PRK14481, PRK14481, dihydroxyacetone kinase subunit DhaK; Provisional	NA|199aa|up_8|LR134400.1_381157_381754_+	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit	NA|125aa|up_7|LR134400.1_381757_382132_+	PRK14484, PRK14484, phosphotransferase mannnose-specific family component IIA; Provisional	NA|284aa|up_6|LR134400.1_382237_383089_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|280aa|up_5|LR134400.1_383207_384047_+	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|281aa|up_4|LR134400.1_384167_385010_+	COG0656, ARA1, Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]	NA|82aa|up_3|LR134400.1_385055_385301_-	pfam10704, DUF2508, Protein of unknown function (DUF2508)	NA|199aa|up_2|LR134400.1_385315_385912_-	PRK00076, recR, recombination protein RecR; Reviewed	NA|106aa|up_1|LR134400.1_386020_386338_-	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|580aa|up_0|LR134400.1_386367_388107_-	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated	NA|155aa|down_0|LR134400.1_388433_388898_-	pfam11687, DUF3284, Domain of unknown function (DUF3284)	NA|63aa|down_1|LR134400.1_388915_389104_-	pfam11384, DUF3188, Protein of unknown function (DUF3188)	NA|74aa|down_2|LR134400.1_389100_389322_-	NA	NA|455aa|down_3|LR134400.1_389456_390821_-	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]	NA|52aa|down_4|LR134400.1_391263_391419_+	NA	NA|214aa|down_5|LR134400.1_391451_392093_-	NA	NA|32aa|down_6|LR134400.1_392637_392733_-	NA	NA|498aa|down_7|LR134400.1_392790_394284_-	cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases	NA|313aa|down_8|LR134400.1_394419_395358_-	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|316aa|down_9|LR134400.1_395400_396348_-	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain
GCA_900637775.1_52592_D02	LR134402	Listeria monocytogenes strain NCTC7974 genome assembly, plasmid: 5	2	473541-474085	1,1,2	PILER-CR,CRT,CRISPRCasFinder	no		csa3,DinG,cas3,WYL,casR	Orphan	GTTTTAGTTACTTATTGTGAAATGTAAAT,GTTTTAGTTACTTATTGTGAAATGTAAAT,TTTTAGTTACTTATTGTGAAATGTAAAT	29,29,28	1	1	473957-473992	LR134403.1_213463-213498	I-A:I-A:I-A	8,8,8	8	Orphan	WYL,csa3,csn2,cas2,cas1,cas9,DinG,cas3,casR,DEDDh	NA|133aa|up_5|LR134402.1_468529_468928_+,NA|193aa|down_0|LR134402.1_474476_475055_+	NA|217aa|up_9|LR134402.1_464592_465243_+	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism]	NA|687aa|up_8|LR134402.1_465351_467412_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|201aa|up_7|LR134402.1_467415_468018_+	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]	NA|156aa|up_6|LR134402.1_468045_468513_+	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|133aa|up_5|LR134402.1_468529_468928_+	NA	NA|217aa|up_4|LR134402.1_468938_469589_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|349aa|up_3|LR134402.1_469585_470632_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|98aa|up_2|LR134402.1_470647_470941_+	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|424aa|up_1|LR134402.1_470955_472227_+	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|312aa|up_0|LR134402.1_472366_473302_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|193aa|down_0|LR134402.1_474476_475055_+	NA	NA|227aa|down_1|LR134402.1_475162_475843_+	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|121aa|down_2|LR134402.1_475867_476230_-	TIGR02058, lin0512_fam, conserved hypothetical protein	NA|153aa|down_3|LR134402.1_476233_476692_-	pfam12802, MarR_2, MarR family	NA|612aa|down_4|LR134402.1_477073_478909_+	NF033186, internalin_K, class 1 internalin InlK	NA|145aa|down_5|LR134402.1_479006_479441_+	pfam00582, Usp, Universal stress protein family	NA|477aa|down_6|LR134402.1_479487_480918_-	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|272aa|down_7|LR134402.1_481038_481854_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|123aa|down_8|LR134402.1_482134_482503_-	COG3759, COG3759, Predicted membrane protein [Function unknown]	NA|472aa|down_9|LR134402.1_482649_484065_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily
