The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR134400	Listeria monocytogenes strain NCTC7974 genome assembly, plasmid: 3	593685	146524	154368	593685		Streptococcus_phage(50.0%)	7	NA	NA
VEH59189.1|146524_147496_-	Putative sporulation transcription regulator WhiA	NA	Q7AWZ3	Streptococcus_phage	39.4	5.2e-52
VEH59191.1|147503_148472_-	LPPG:FO 2-phospho-L-lactate transferase	NA	A1IMD5	Streptococcus_phage	43.3	6.7e-68
VEH59193.1|148473_149349_-	glmZ(sRNA)-inactivating NTPase	NA	A0A0R8VB27	Thermobifida_phage	29.7	3.2e-08
VEH59195.1|149456_151187_-	Phosphoglucomutase	NA	A0A1X9I671	Streptococcus_phage	53.3	4.3e-174
VEH59197.1|151228_152272_-	Aldose 1-epimerase precursor	NA	NA	NA	NA	NA
VEH59199.1|152306_153290_-	UDP-glucose 4-epimerase	NA	A0A2K9L5H6	Tupanvirus	38.1	1.2e-51
VEH59201.1|153408_154368_-	Thioredoxin reductase	NA	G3MA85	Bacillus_virus	53.7	2.0e-88
>prophage 2
LR134400	Listeria monocytogenes strain NCTC7974 genome assembly, plasmid: 3	593685	441828	451860	593685		Tupanvirus(33.33%)	6	NA	NA
VEH59775.1|441828_443982_-	DNA topoisomerase 3	NA	A0A1X9I6W8	Streptococcus_phage	34.1	6.7e-44
VEH59777.1|444005_445778_-	ATP-dependent DNA helicase recQ	NA	A0A2K9L3P7	Tupanvirus	37.1	1.1e-79
VEH59779.1|445938_447405_-	Inosine-5'-monophosphate dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.0	8.0e-97
VEH59781.1|447690_448221_-	O-acetyl-ADP-ribose deacetylase	NA	A0A0K1L687	Scale_drop_disease_virus	49.3	2.6e-29
VEH59783.1|448278_449889_-	Uncharacterized ABC transporter ATP-binding protein HI_1252	NA	A0A2K9L3Z8	Tupanvirus	29.9	7.5e-48
VEH59785.1|450405_451860_+	Aryl-phospho-beta-D-glucosidase BglC	NA	A0A0B5JD41	Pandoravirus	30.3	1.9e-50
>prophage 1
LR134401	Listeria monocytogenes strain NCTC7974 genome assembly, plasmid: 4	809616	433794	442080	809616		Prochlorococcus_phage(33.33%)	8	NA	NA
VEH61277.1|433794_435087_+	Adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.6	5.5e-17
VEH61279.1|435167_435881_+	Phosphoribosylaminoimidazole-succinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	38.7	2.7e-42
VEH61281.1|435892_436138_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
VEH61283.1|436141_436825_+	Phosphoribosylformylglycinamidine synthase 1	NA	NA	NA	NA	NA
VEH61285.1|436817_439037_+	Phosphoribosylformylglycinamidine synthase 2	NA	A6N228	Microbacterium_phage	41.2	1.0e-159
VEH61287.1|439021_440449_+	Amidophosphoribosyltransferase precursor	NA	A0A0M3SGR2	Mollivirus	34.6	1.1e-53
VEH61289.1|440467_441517_+	Phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	44.4	8.3e-64
VEH61291.1|441513_442080_+	Phosphoribosylglycinamide formyltransferase	NA	E3SNR5	Prochlorococcus_phage	39.1	1.3e-26
>prophage 1
LR134402	Listeria monocytogenes strain NCTC7974 genome assembly, plasmid: 5	568990	66840	77567	568990	holin,tail	Listeria_phage(40.0%)	17	NA	NA
VEH61850.1|66840_67302_-	Domain of uncharacterised function (DUF955)	NA	A0A059T7S0	Listeria_phage	47.9	3.1e-31
VEH61851.1|67298_67634_-	Predicted transcriptional regulator	NA	A0A2H4JAR9	uncultured_Caudovirales_phage	52.5	4.0e-20
VEH61852.1|67850_68279_+	Uncharacterised protein	NA	A8ATZ8	Listeria_phage	45.7	3.0e-12
VEH61853.1|68290_68707_+	phage transcriptional regulator, ArpU family	NA	NA	NA	NA	NA
VEH61854.1|68984_69374_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH61855.1|69386_69899_+	Predicted secreted protein	NA	A0A097PBF4	Streptococcus_pyogenes_phage	62.7	1.2e-47
VEH61856.1|69946_70249_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH61857.1|70290_70695_+	Uncharacterised protein	NA	A0A097PAX1	Streptococcus_pyogenes_phage	43.7	1.1e-19
VEH61858.1|70681_72550_+	Phage-related protein	NA	A0A097PAU2	Streptococcus_pyogenes_phage	45.8	3.5e-20
VEH61859.1|72546_73365_+	Phage-related protein	NA	Q9T1A6	Listeria_phage	35.5	5.7e-44
VEH61860.1|73374_74511_+|tail	Prophage endopeptidase tail	tail	A0A0B5D0G3	Listeria_phage	33.5	1.0e-46
VEH61861.1|74500_74800_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH61862.1|74814_75390_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH61863.1|75404_75884_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH61864.1|75880_76417_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH61865.1|76435_76858_+|holin	Phage-related holin (Lysis protein)	holin	Q2I8E7	Bacillus_phage	46.3	1.1e-27
VEH61866.1|76838_77567_+	Sporulation-specific N-acetylmuramoyl-L-alanine amidase	NA	A0A0N9SGH1	Paenibacillus_phage	42.5	5.6e-35
>prophage 1
LR134403	Listeria monocytogenes strain NCTC7974 genome assembly, plasmid: 6	407263	189457	259122	407263	protease,portal,terminase,capsid,tail	Listeria_phage(87.14%)	94	NA	NA
VEH62516.1|189457_190591_-	Tyrosine recombinase XerD	NA	A8ATC7	Listeria_phage	50.3	1.3e-94
VEH62517.1|190717_191332_-	Uncharacterised protein	NA	A0A059T7Z1	Listeria_phage	86.3	1.4e-87
VEH62518.1|191743_192217_-	Helix-turn-helix domain	NA	R4IDX0	Listeria_phage	45.3	3.1e-18
VEH62519.1|192482_192674_+	Helix-turn-helix domain	NA	A0A059T5F8	Listeria_phage	92.1	6.4e-23
VEH62520.1|192709_192952_+	Uncharacterised protein	NA	A8ATD2	Listeria_phage	65.0	1.1e-24
VEH62521.1|192955_193150_+	Uncharacterised protein	NA	A0A059T7Z3	Listeria_phage	73.4	7.4e-19
VEH62522.1|193384_193537_+	Uncharacterised protein	NA	A8ATD4	Listeria_phage	100.0	1.5e-19
VEH62523.1|193670_193847_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH62524.1|193843_194119_+	Uncharacterised protein	NA	A0A059T7V3	Listeria_phage	86.3	4.3e-36
VEH62525.1|194115_194562_+	Uncharacterised protein	NA	A0A059T5F9	Listeria_phage	93.9	2.9e-74
VEH62526.1|194572_194776_+	Uncharacterised protein	NA	A8ASN5	Listeria_phage	92.6	2.7e-19
VEH62527.1|194833_195397_+	Protein of uncharacterised function (DUF1642)	NA	Q8W5X2	Listeria_phage	46.3	1.8e-36
VEH62528.1|195393_195540_+	Uncharacterised protein	NA	A8ATZ0	Listeria_phage	97.9	2.3e-20
VEH62529.1|195555_195735_+	Uncharacterised protein	NA	A0A059T5G0	Listeria_phage	86.4	1.3e-22
VEH62530.1|195731_196025_+	Uncharacterised protein	NA	A8ATM4	Listeria_phage	76.3	3.4e-31
VEH62531.1|196042_196564_+	YopX protein	NA	A8ASP1	Listeria_phage	54.1	3.1e-35
VEH62532.1|196563_196833_+	Uncharacterised protein	NA	A0A059T7S7	Listeria_phage	92.9	7.3e-41
VEH62533.1|196829_197453_+	Uncharacterized conserved protein	NA	NA	NA	NA	NA
VEH62534.1|197449_197656_+	Uncharacterised protein	NA	A0A059T6C7	Listeria_phage	94.1	3.4e-30
VEH62535.1|197652_197904_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH62536.1|198007_198391_+	Uncharacterised protein	NA	A8ATZ3	Listeria_phage	93.7	2.5e-58
VEH62537.1|198411_198639_+	Domain of Uncharacterised Function with PDB structure	NA	A0A059T7N3	Listeria_phage	84.0	4.6e-28
VEH62538.1|198650_198959_+	Uncharacterised protein	NA	A0A059T801	Listeria_phage	95.1	8.4e-49
VEH62539.1|199021_199525_+	Uncharacterised protein	NA	A0A059T8B2	Listeria_phage	27.3	9.3e-05
VEH62540.1|199508_200102_+	Uncharacterised protein	NA	A8ATS5	Listeria_phage	65.2	5.9e-59
VEH62541.1|200101_200674_+	Protein of unknwon function (DUF3310)	NA	A0A059T5J6	Listeria_phage	73.7	2.0e-75
VEH62542.1|200670_200844_+	Uncharacterised protein	NA	A0A059T5G3	Listeria_phage	96.5	4.4e-23
VEH62543.1|200840_201224_+	Uncharacterised protein	NA	A8ATE8	Listeria_phage	80.3	1.0e-51
VEH62544.1|201225_201705_+	Siphovirus Gp157	NA	Q8W5W1	Listeria_phage	100.0	5.4e-79
VEH62545.1|201717_202407_+	phage nucleotide-binding protein	NA	A0A059T7T3	Listeria_phage	100.0	2.6e-130
VEH62546.1|202470_203727_+	ATP-dependent RNA helicase SrmB	NA	Q8W5V9	Listeria_phage	97.6	4.9e-236
VEH62547.1|203751_204237_+	Protein of uncharacterised function (DUF669)	NA	Q8W5V8	Listeria_phage	99.4	1.4e-87
VEH62548.1|204259_206602_+	Uncharacterized conserved protein	NA	A0A059T6A4	Listeria_phage	43.2	1.3e-146
VEH62549.1|206896_207217_+	VRR-NUC domain	NA	Q8W5V6	Listeria_phage	97.1	9.9e-53
VEH62550.1|207238_207769_+	Protein of unknwon function (DUF3310)	NA	A0A059T7T5	Listeria_phage	88.1	2.1e-87
VEH62551.1|207769_208195_+	phage transcriptional regulator, RinA family	NA	Q8W5V4	Listeria_phage	92.9	1.0e-68
VEH62552.1|209142_209442_+	Uncharacterised protein	NA	A0A059T7Y1	Listeria_phage	98.0	1.7e-46
VEH62553.1|209438_211082_+|terminase	Phage terminase-like protein, large subunit	terminase	A0A059T7Q8	Listeria_phage	98.4	0.0e+00
VEH62554.1|211091_211481_-	Uncharacterised protein	NA	A0A1Q1PVT8	Staphylococcus_phage	39.8	4.8e-17
VEH62555.1|211531_212662_+|portal	phage portal protein, HK97 family	portal	A0A059T6F0	Listeria_phage	95.2	1.7e-208
VEH62556.1|212658_213456_+|protease	ATP-dependent Clp protease proteolytic subunit 1	protease	A0A059T5F2	Listeria_phage	98.5	1.2e-142
VEH62557.1|213482_214634_+|capsid	Predicted phage phi-C31 gp36 major capsid-like protein	capsid	A0A059T678	Listeria_phage	100.0	6.3e-214
VEH62558.1|214640_214811_+	Uncharacterised protein	NA	A0A059T7Y2	Listeria_phage	100.0	6.3e-22
VEH62559.1|214820_215120_+	Uncharacterised protein	NA	A0A059T7R0	Listeria_phage	100.0	5.3e-48
VEH62560.1|215103_215469_+	Uncharacterised protein	NA	A0A059T6F2	Listeria_phage	98.3	9.3e-63
VEH62561.1|215465_215867_+	Uncharacterised protein	NA	A8ATA2	Listeria_phage	94.7	1.1e-64
VEH62562.1|215863_216247_+	Uncharacterised protein	NA	A0A059T681	Listeria_phage	96.1	1.0e-64
VEH62563.1|216267_216855_+|tail	phage major tail protein, phi13 family	tail	A0A059T7Y4	Listeria_phage	99.0	9.9e-107
VEH62564.1|216925_217258_+	Uncharacterised protein	NA	A0A059T7R2	Listeria_phage	97.3	5.1e-52
VEH62565.1|217308_217458_+	Uncharacterised protein	NA	A0A059T6F4	Listeria_phage	100.0	2.3e-20
VEH62566.1|217473_222393_+	Phage-related protein	NA	A0A059T5F4	Listeria_phage	94.8	0.0e+00
VEH62567.1|222389_224039_+	Phage-related protein	NA	A0A059T682	Listeria_phage	98.9	0.0e+00
VEH62568.1|224054_226349_+	Phage-related protein	NA	A0A059T7Y6	Listeria_phage	98.7	0.0e+00
VEH62569.1|226338_227433_+	Uncharacterised protein	NA	A0A059T7R4	Listeria_phage	94.5	5.6e-196
VEH62570.1|227481_227925_+	Uncharacterised protein	NA	A0A059T6F6	Listeria_phage	100.0	6.8e-76
VEH62571.1|227903_228320_+	Uncharacterised protein	NA	A0A059T5F5	Listeria_phage	99.3	9.3e-43
VEH62572.1|228340_228604_+	Small integral membrane protein	NA	A0A059T684	Listeria_phage	93.0	9.7e-38
VEH62573.1|228600_228834_+	Uncharacterised protein	NA	R4IBI3	Listeria_phage	84.4	4.6e-31
VEH62574.1|228835_229609_+	N-acetylmuramoyl-L-alanine amidase CwlA precursor	NA	R4ICC5	Listeria_phage	88.4	1.3e-85
VEH62575.1|229709_229904_+	Ftsk gamma domain	NA	NA	NA	NA	NA
VEH62576.1|230065_230638_-	Uncharacterised protein	NA	A0A059T7R6	Listeria_phage	93.7	9.0e-97
VEH62577.1|230705_231155_-	Uncharacterised protein	NA	Q9T196	Listeria_phage	91.3	2.1e-69
VEH62578.1|231159_231510_-	Uncharacterised protein	NA	Q9T195	Listeria_phage	93.1	4.9e-53
VEH62579.1|231541_231919_-	Uncharacterised protein	NA	A0A059T686	Listeria_phage	97.6	9.3e-66
VEH62580.1|232421_232655_+	Uncharacterised protein	NA	A8ATX0	Listeria_phage	94.8	2.3e-35
VEH62581.1|232651_232834_+	Uncharacterised protein	NA	A8ATC6	Listeria_phage	60.7	6.3e-12
VEH62582.1|233361_234624_+	Protein of uncharacterised function (DUF1254)	NA	M1HNU9	Paramecium_bursaria_Chlorella_virus	22.1	1.7e-07
VEH62583.1|234665_235259_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VEH62584.1|235412_235820_-	3-demethylubiquinone-9 3-methyltransferase	NA	NA	NA	NA	NA
VEH62585.1|235984_236584_+	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	NA	A0A1X9IGJ2	Lactococcus_phage	40.5	1.7e-29
VEH62586.1|236615_236876_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH62587.1|236999_238412_+	ATP-dependent RNA helicase dbpA	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	31.8	8.3e-51
VEH62588.1|238436_238700_+	Protein of uncharacterised function (DUF3116)	NA	NA	NA	NA	NA
VEH62589.1|238868_239345_+	8-oxo-dGTP diphosphatase	NA	NA	NA	NA	NA
VEH62590.1|239383_239629_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH62591.1|239625_240831_-	Sulfonamide resistance protein	NA	NA	NA	NA	NA
VEH62592.1|241035_241695_+	Listeriolysin regulatory protein	NA	NA	NA	NA	NA
VEH62593.1|241997_242846_-	Uncharacterized BCR, YitT family COG1284	NA	NA	NA	NA	NA
VEH62594.1|243465_244179_+	Trehalose operon transcriptional repressor	NA	NA	NA	NA	NA
VEH62595.1|244209_245856_-	Trehalose-6-phosphate hydrolase	NA	NA	NA	NA	NA
VEH62596.1|245874_247359_-	EIIBC-Tre	NA	NA	NA	NA	NA
VEH62597.1|247474_247927_+	NUDIX domain	NA	NA	NA	NA	NA
VEH62598.1|247973_248438_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH62599.1|248626_249547_+	Phospholipase ytpA	NA	Q6TUZ7	Yaba_monkey_tumor_virus	26.1	1.1e-14
VEH62600.1|249566_250814_-	Gamma-glutamyl phosphate reductase	NA	A0A1X9I5D4	Streptococcus_phage	51.8	1.2e-106
VEH62601.1|250797_251628_-	Glutamate 5-kinase 1	NA	A0A1X9I5D0	Streptococcus_phage	42.4	4.3e-47
VEH62602.1|251763_252903_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEH62603.1|252983_253379_-	HTH-type transcriptional regulator immR	NA	A9D9J6	Lactobacillus_prophage	57.4	1.3e-14
VEH62604.1|253529_253745_+	Helix-turn-helix	NA	NA	NA	NA	NA
VEH62605.1|253863_254397_+	Matrixin	NA	NA	NA	NA	NA
VEH62606.1|254414_255080_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH62607.1|255341_256280_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEH62608.1|256394_257678_+	Trigger factor	NA	NA	NA	NA	NA
VEH62609.1|257862_259122_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	63.2	1.4e-145
