assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900637625.1_52295_C01	LR134385	Gardnerella vaginalis strain NCTC10287 genome assembly, chromosome: 1	1	15310-17167	1,1,1,2	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	DEDDh,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,PD-DExK,WYL	Type I-E	GGATCACCCCCGCGTATGCGGGAAATAC,GGATCACCCCCGCGTATGCGGGAAATAC,GGATCACCCCCGCGTATGCGGGAAATAC,GGATCACCCCCGCGTATGCGGGAAATAC	28,28,28,28	0	0	NA	NA	I-C,I-E,II-B:I-C,I-E,II-B:I-C,I-E,II-B:I-C,I-E,II-B	30,30,27,27	30	TypeI-E	DEDDh,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,PD-DExK,WYL	NA|95aa|up_2|LR134385.1_14242_14527_+,NA|54aa|up_1|LR134385.1_14653_14815_+,NA|110aa|up_0|LR134385.1_14825_15155_+,NA|99aa|down_8|LR134385.1_28092_28389_-,NA|45aa|down_9|LR134385.1_28518_28653_-	NA|300aa|up_9|LR134385.1_6392_7292_-	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]	NA|315aa|up_8|LR134385.1_7294_8239_-	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]	NA|271aa|up_7|LR134385.1_8228_9041_-	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]	NA|395aa|up_6|LR134385.1_9135_10320_-	pfam01297, ZnuA, Zinc-uptake complex component A periplasmic	NA|348aa|up_5|LR134385.1_10661_11705_+	cd01171, YXKO-related, B	NA|229aa|up_4|LR134385.1_11719_12406_+	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|311aa|up_3|LR134385.1_12505_13438_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|95aa|up_2|LR134385.1_14242_14527_+	NA	NA|54aa|up_1|LR134385.1_14653_14815_+	NA	NA|110aa|up_0|LR134385.1_14825_15155_+	NA	DEDDh|360aa|down_0|LR134385.1_17274_18354_-	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family	cas1|314aa|down_1|LR134385.1_18355_19297_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|216aa|down_2|LR134385.1_19322_19970_-	pfam08798, CRISPR_assoc, CRISPR associated protein	cas5|292aa|down_3|LR134385.1_19970_20846_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|363aa|down_4|LR134385.1_20904_21993_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|205aa|down_5|LR134385.1_22087_22702_-	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas8e|557aa|down_6|LR134385.1_22724_24395_-	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cas3|952aa|down_7|LR134385.1_24381_27237_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|99aa|down_8|LR134385.1_28092_28389_-	NA	NA|45aa|down_9|LR134385.1_28518_28653_-	NA
GCA_900637625.1_52295_C01	LR134385	Gardnerella vaginalis strain NCTC10287 genome assembly, chromosome: 1	2	462031-462106	2	CRISPRCasFinder	no		DEDDh,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,PD-DExK,WYL	Orphan	CCGATTTGGGAAACAAACTCGGG	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,PD-DExK,WYL	NA|216aa|up_8|LR134385.1_449415_450063_+,NA|456aa|down_4|LR134385.1_468351_469719_-	NA|227aa|up_9|LR134385.1_448357_449038_-	PRK10847, PRK10847, DedA family protein	NA|216aa|up_8|LR134385.1_449415_450063_+	NA	NA|664aa|up_7|LR134385.1_450610_452602_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|453aa|up_6|LR134385.1_452777_454136_-	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated	NA|470aa|up_5|LR134385.1_454224_455634_-	cd07383, MPP_Dcr2, Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain	NA|285aa|up_4|LR134385.1_456115_456970_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|72aa|up_3|LR134385.1_456998_457214_-	PRK07597, secE, preprotein translocase subunit SecE; Reviewed	NA|428aa|up_2|LR134385.1_457492_458776_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|382aa|up_1|LR134385.1_459137_460283_-	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional	NA|555aa|up_0|LR134385.1_460283_461948_-	PRK12296, obgE, GTPase CgtA; Reviewed	NA|84aa|down_0|LR134385.1_462312_462564_-	PRK05435, rpmA, 50S ribosomal protein L27; Validated	NA|103aa|down_1|LR134385.1_462597_462906_-	PRK05573, rplU, 50S ribosomal protein L21; Validated	NA|1158aa|down_2|LR134385.1_463087_466561_-	TIGR00757, Ribonuclease_E/G-like_protein, ribonuclease, Rne/Rng family	NA|314aa|down_3|LR134385.1_466874_467816_+	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|456aa|down_4|LR134385.1_468351_469719_-	NA	NA|478aa|down_5|LR134385.1_470267_471701_-	PRK00148, PRK00148, Maf-like protein; Reviewed	NA|344aa|down_6|LR134385.1_471734_472766_-	PRK01212, PRK01212, homoserine kinase; Provisional	NA|463aa|down_7|LR134385.1_472830_474219_-	PRK06349, PRK06349, homoserine dehydrogenase; Provisional	NA|331aa|down_8|LR134385.1_474324_475317_-	pfam02517, Abi, CAAX protease self-immunity	NA|382aa|down_9|LR134385.1_475458_476604_-	PRK01966, ddl, D-alanine--D-alanine ligase
GCA_900637625.1_52295_C01	LR134385	Gardnerella vaginalis strain NCTC10287 genome assembly, chromosome: 1	3	536997-537074	3	CRISPRCasFinder	no		DEDDh,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,PD-DExK,WYL	Orphan	TCACGAGCGAGACAAATCTAACGAAA	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,PD-DExK,WYL	NA|78aa|up_8|LR134385.1_521738_521972_-,NA	NA|282aa|up_9|LR134385.1_520999_521845_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|78aa|up_8|LR134385.1_521738_521972_-	NA	NA|977aa|up_7|LR134385.1_522516_525447_-	pfam17210, SdrD_B, SdrD B-like domain	NA|511aa|up_6|LR134385.1_525942_527475_-	COG2759, MIS1, Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]	NA|536aa|up_5|LR134385.1_527672_529280_-	pfam03577, Peptidase_C69, Peptidase family C69	NA|184aa|up_4|LR134385.1_529488_530040_-	cd00865, PEBP_bact_arch, PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea	NA|396aa|up_3|LR134385.1_530375_531563_-	PRK07940, PRK07940, DNA polymerase III subunit delta'; Validated	NA|234aa|up_2|LR134385.1_531589_532291_-	PRK00698, tmk, thymidylate kinase; Validated	NA|953aa|up_1|LR134385.1_532312_535171_-	PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated	NA|374aa|up_0|LR134385.1_535341_536463_-	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|381aa|down_0|LR134385.1_537243_538386_-	TIGR03450, mycothiol_INO1, inositol 1-phosphate synthase, Actinobacterial type	NA|784aa|down_1|LR134385.1_538520_540872_+	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane]	NA|238aa|down_2|LR134385.1_541233_541947_-	cd07505, HAD_BPGM-like, beta-phosphoglucomutase-like family of the haloacid dehalogenase-like (HAD) hydrolase superfamily	NA|205aa|down_3|LR134385.1_542076_542691_-	cd04766, HTH_HspR, Helix-Turn-Helix DNA binding domain of the HspR transcription regulator	NA|351aa|down_4|LR134385.1_542731_543784_-	COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]	NA|257aa|down_5|LR134385.1_543993_544764_-	PRK14157, PRK14157, heat shock protein GrpE; Provisional	NA|634aa|down_6|LR134385.1_544763_546665_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|243aa|down_7|LR134385.1_546864_547593_-	cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA	NA|274aa|down_8|LR134385.1_547635_548457_-	PRK00208, thiG, thiazole synthase; Reviewed	NA|69aa|down_9|LR134385.1_548525_548732_-	cd00565, Ubl_ThiS, ubiquitin-like (Ubl) domain found in sulfur carrier protein ThiS
GCA_900637625.1_52295_C01	LR134385	Gardnerella vaginalis strain NCTC10287 genome assembly, chromosome: 1	4	1050563-1050669	4	CRISPRCasFinder	no		DEDDh,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,PD-DExK,WYL	Orphan	GCACGTAAAGTCCACTGGACTTTA	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,PD-DExK,WYL	NA|239aa|up_2|LR134385.1_1041745_1042462_+,NA|254aa|down_4|LR134385.1_1064391_1065153_+,NA|800aa|down_8|LR134385.1_1075997_1078397_+	NA|123aa|up_9|LR134385.1_1034028_1034397_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|285aa|up_8|LR134385.1_1034434_1035289_+	TIGR02227, Inactive_signal_peptidase_IA	NA|228aa|up_7|LR134385.1_1035328_1036012_+	PRK00015, rnhB, ribonuclease HII; Validated	NA|867aa|up_6|LR134385.1_1036265_1038866_+	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|246aa|up_5|LR134385.1_1038849_1039587_+	pfam07510, DUF1524, Protein of unknown function (DUF1524)	NA|316aa|up_4|LR134385.1_1040048_1040996_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|228aa|up_3|LR134385.1_1041007_1041691_+	cd18094, SpoU-like_TrmL, SAM-dependent tRNA methylase related to TrmL	NA|239aa|up_2|LR134385.1_1041745_1042462_+	NA	NA|1189aa|up_1|LR134385.1_1042661_1046228_+	PRK00405, rpoB, DNA-directed RNA polymerase subunit beta; Reviewed	NA|1340aa|up_0|LR134385.1_1046315_1050335_+	PRK00566, PRK00566, DNA-directed RNA polymerase subunit beta'; Provisional	NA|482aa|down_0|LR134385.1_1050847_1052293_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|619aa|down_1|LR134385.1_1052893_1054750_+	pfam17802, SpaA, Prealbumin-like fold domain	NA|383aa|down_2|LR134385.1_1054955_1056104_+	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|2712aa|down_3|LR134385.1_1056143_1064279_+	TIGR04264, hypothetical_protein_SAO11_2114, hyperosmolarity resistance protein Ebh, N-terminal domain	NA|254aa|down_4|LR134385.1_1064391_1065153_+	NA	NA|1639aa|down_5|LR134385.1_1065571_1070488_+	pfam12705, PDDEXK_1, PD-(D/E)XK nuclease superfamily	NA|1391aa|down_6|LR134385.1_1070480_1074653_+	COG1074, RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]	NA|224aa|down_7|LR134385.1_1074740_1075412_+	cd04301, NAT_SF, N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate	NA|800aa|down_8|LR134385.1_1075997_1078397_+	NA	NA|1116aa|down_9|LR134385.1_1078493_1081841_+	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]
