The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR134351	Staphylococcus aureus strain NCTC13811 genome assembly, chromosome: 1	2955381	318	22116	2955381	tail,transposase,holin	Staphylococcus_phage(77.78%)	25	NA	NA
VEG24805.1|318_858_+|tail	Phage tail length tape-measure protein	tail	A0A2I6PF36	Staphylococcus_phage	96.0	8.8e-86
VEG24807.1|874_991_+|tail	prophage L54a, tail tape meausure protein, family	tail	A0A2I6PF36	Staphylococcus_phage	97.3	9.8e-11
VEG24809.1|1091_1403_+|tail	Phage tail length tape-measure protein	tail	NA	NA	NA	NA
VEG24810.1|1366_1747_+	phage protein	NA	Q9B0D2	Staphylococcus_virus	78.0	4.8e-30
VEG24811.1|2209_2920_+|tail	Phage tail length tape-measure protein	tail	U5U762	Staphylococcus_phage	82.9	2.9e-60
VEG24812.1|2871_4281_+	TP901 family prophage L54a	NA	A0A2I6PEB6	Staphylococcus_phage	99.8	2.7e-275
VEG24813.1|4280_5105_+|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
VEG24814.1|5113_6697_+|tail	prophage endopeptidase tail family protein	tail	A0A2I6PEQ5	Staphylococcus_phage	100.0	9.3e-309
VEG24815.1|6696_6987_+	putative gp53	NA	A0A2I6PF46	Staphylococcus_phage	100.0	2.1e-49
VEG24816.1|7002_8913_+	putative minor structural protein	NA	A0A2I6PF35	Staphylococcus_phage	100.0	0.0e+00
VEG24817.1|8912_10379_+|tail	putative phage tail protein	tail	M1TB09	Staphylococcus_phage	100.0	2.7e-254
VEG24818.1|10378_10768_+	phage protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
VEG24819.1|10760_10925_+	phage protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
VEG24820.1|10970_11270_+	hypothetical phage-related protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
VEG24821.1|11810_12065_+|holin	Phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
VEG24822.1|12076_12832_+	Autolysin	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
VEG24823.1|13684_14512_-	esterase/lipase-protein	NA	NA	NA	NA	NA
VEG24824.1|14569_15784_-	NADH:flavin oxidoreductase/NADH oxidase	NA	NA	NA	NA	NA
VEG24825.1|16091_17093_+	Luciferase-like monooxygenase	NA	NA	NA	NA	NA
VEG24826.1|17126_17459_+	Glycine cleavage system H protein	NA	NA	NA	NA	NA
VEG24827.1|17459_18260_+	macro domain protein	NA	A0A2K9L8X2	Tupanvirus	44.4	1.5e-41
VEG24828.1|18249_19194_+	SIR2 family protein	NA	NA	NA	NA	NA
VEG24829.1|19171_20194_+	Lipoate-protein ligase A	NA	A0A2H4UVX5	Bodo_saltans_virus	28.1	6.7e-10
VEG24830.1|20509_21349_+	Putative aldehyde reductase-NAD dependent epimerase/dehydratase family protein	NA	NA	NA	NA	NA
VEG24831.1|21387_22116_+|transposase	transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	35.8	4.5e-24
>prophage 2
LR134351	Staphylococcus aureus strain NCTC13811 genome assembly, chromosome: 1	2955381	59106	77328	2955381	transposase,integrase,terminase	Staphylococcus_phage(90.48%)	27	62329:62343	77608:77622
VEG24869.1|59106_59298_-	Uncharacterised protein	NA	U3PCX8	Staphylococcus_phage	80.0	4.9e-23
VEG24870.1|59541_59838_+	30S ribosomalprotein S6p	NA	NA	NA	NA	NA
VEG24871.1|59858_60362_+	single-stranded DNA-binding protein	NA	A0A1W6JPL9	Staphylococcus_phage	74.7	1.2e-60
VEG24872.1|60413_60656_+	30S ribosomalprotein S18p	NA	NA	NA	NA	NA
VEG24873.1|60887_61607_-	PemK-like growth inhibitor	NA	Q4ZE81	Staphylococcus_phage	29.8	3.7e-23
VEG24874.1|61719_62934_-	Integrase	NA	Q4ZE80	Staphylococcus_phage	97.3	3.3e-221
62329:62343	attL	AATTAGATAGTCGAA	NA	NA	NA	NA
VEG24875.1|63094_63718_-	DNA-binding protein	NA	NA	NA	NA	NA
VEG24876.1|63866_64031_+	putative DNA-binding protein	NA	NA	NA	NA	NA
VEG24877.1|64031_64304_+	pathogenicity island DNA-binding protein	NA	Q4ZE77	Staphylococcus_phage	94.4	1.2e-43
VEG24878.1|64315_64489_+	hypothetical bovine pathogenicity island protein	NA	NA	NA	NA	NA
VEG24879.1|64455_64659_+	pathogenicity island protein	NA	A0A1W6JQF4	Staphylococcus_phage	98.5	2.0e-30
VEG24880.1|64660_65044_+	pathogenicity island protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.1	4.8e-62
VEG24881.1|65044_65371_+	mobile element-associated protein	NA	Q4ZE75	Staphylococcus_phage	96.3	3.5e-53
VEG24882.1|65435_66305_+	mobile element-associated protein	NA	Q4ZE74	Staphylococcus_phage	96.2	5.3e-165
VEG24883.1|66318_67929_+	pathogenicity island protein	NA	Q4ZE73	Staphylococcus_phage	95.3	3.1e-288
VEG24884.1|68338_68719_+	pathogenicity island protein	NA	Q4ZE71	Staphylococcus_phage	96.8	1.7e-67
VEG24885.1|68715_69357_+	mobile element-associated protein, putative	NA	Q4ZE67	Staphylococcus_phage	92.0	4.0e-109
VEG24886.1|70064_70409_+	pathogenicity island protein	NA	Q4ZE66	Staphylococcus_phage	91.7	1.3e-50
VEG24887.1|70439_71093_+	Uncharacterised protein	NA	Q4ZE82	Staphylococcus_phage	99.5	7.6e-116
VEG24888.1|71145_71673_+	pathogenicity island protein	NA	Q4ZE87	Staphylococcus_phage	100.0	6.8e-91
VEG24889.1|71675_72017_+|transposase	transposase	transposase	Q4ZE86	Staphylococcus_phage	98.2	1.1e-57
VEG24890.1|72013_72583_+|terminase	putative phage terminase	terminase	Q4ZE85	Staphylococcus_phage	98.4	4.6e-101
VEG24891.1|72859_73828_+	abortive infection bacteriophage resistance protein	NA	A0A0H4U080	Erysipelothrix_phage	27.3	2.7e-24
VEG24892.1|74005_74407_+	phage protein	NA	A0A2H4J577	uncultured_Caudovirales_phage	59.1	5.1e-22
VEG24893.1|74524_75037_+	pathogenicity island protein	NA	Q4ZE83	Staphylococcus_phage	100.0	1.4e-69
VEG24894.1|75995_77003_-	abi-like family protein	NA	NA	NA	NA	NA
VEG24895.1|77079_77328_-|integrase	integrase	integrase	Q4ZE80	Staphylococcus_phage	73.4	2.0e-24
77608:77622	attR	AATTAGATAGTCGAA	NA	NA	NA	NA
>prophage 3
LR134351	Staphylococcus aureus strain NCTC13811 genome assembly, chromosome: 1	2955381	394786	405348	2955381	bacteriocin,transposase	Staphylococcus_phage(57.14%)	12	NA	NA
VEG25167.1|394786_396025_+|transposase	transposase	transposase	Q9MBP7	Staphylococcus_prophage	99.5	6.5e-209
VEG25168.1|396051_396726_+|transposase	IS431 transposase	transposase	A0A0N9RU54	Staphylococcus_phage	88.4	1.3e-113
VEG25169.1|396760_396973_-	membrane protein	NA	NA	NA	NA	NA
VEG25170.1|397310_397628_+	recombinase	NA	NA	NA	NA	NA
VEG25171.1|397688_398003_+	arsenical resistance operon repressor	NA	A0A2H4PQT4	Staphylococcus_phage	73.1	4.7e-39
VEG25172.1|398002_399292_+	arsenical pump membrane protein	NA	A0A2H4PQU3	Staphylococcus_phage	81.1	5.6e-187
VEG25173.1|399309_399705_+	arsenate reductase	NA	A0A2H4PQT9	Staphylococcus_phage	86.3	8.5e-62
VEG25174.1|400084_400378_+|bacteriocin	bacteriocin, lactococcin 972 family protein	bacteriocin	NA	NA	NA	NA
VEG25175.1|400452_402387_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
VEG25176.1|402390_402702_+	putative DUF1093-containing protein	NA	NA	NA	NA	NA
VEG25177.1|402713_403340_+|bacteriocin	bacteriocin export ABC transporter, lactococcin 972 group family protein	bacteriocin	G3M9Y6	Bacillus_virus	33.7	6.1e-22
VEG25178.1|403701_405348_+|transposase	transposase	transposase	A0ZS58	Staphylococcus_virus	100.0	3.5e-295
>prophage 4
LR134351	Staphylococcus aureus strain NCTC13811 genome assembly, chromosome: 1	2955381	457411	465231	2955381		Hokovirus(16.67%)	10	NA	NA
VEG25233.1|457411_458467_-	Sensor histidine protein kinase SaeS (exoprotein expression protein S)	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
VEG25234.1|458466_459153_-	Response regulator SaeR	NA	NA	NA	NA	NA
VEG25235.1|459127_459601_-	DoxX family protein	NA	NA	NA	NA	NA
VEG25236.1|459942_460383_-	lipoprotein	NA	NA	NA	NA	NA
VEG25237.1|460662_461247_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEG25238.1|461345_462059_-	Queuosine Biosynthesis QueE Radical SAM	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
VEG25239.1|462062_462482_-	6-pyruvoyl-tetrahydropterin synthase	NA	S4U060	uncultured_phage	28.7	6.3e-07
VEG25240.1|462483_463152_-	Queuosine Biosynthesis QueC ATPase	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
VEG25241.1|463502_464096_+	Para-aminobenzoate synthase, amidotransferase component PabAb	NA	A0A0P0IKJ1	Acinetobacter_phage	44.0	6.8e-39
VEG25242.1|464079_465231_+	Para-aminobenzoate synthetase component I	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
>prophage 5
LR134351	Staphylococcus aureus strain NCTC13811 genome assembly, chromosome: 1	2955381	477203	491341	2955381		uncultured_Caudovirales_phage(50.0%)	13	NA	NA
VEG25251.1|477203_478262_+	histidinol-phosphate aminotransferase	NA	A0A0H3TLT9	Faustovirus	26.5	5.7e-20
VEG25252.1|478420_478963_+	5'-3'-deoxyribonucleotidase, putative	NA	NA	NA	NA	NA
VEG25253.1|478967_479102_+	nitrogen regulation protein NIFR3	NA	NA	NA	NA	NA
VEG25254.1|479514_480432_-	Transcription regulator (contains diacylglycerol kinase catalytic domain)	NA	A0A1V0SBJ0	Catovirus	22.0	8.2e-07
VEG25255.1|480701_482207_-	Di/tripeptide permease YjdL	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
VEG25256.1|482546_483047_-	NADPH dependent preQ0 reductase	NA	E7DN65	Pneumococcus_phage	66.2	2.7e-52
VEG25257.1|483066_483933_-	Integral membrane domain protein	NA	NA	NA	NA	NA
VEG25258.1|484734_485133_+	Nrdi	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
VEG25259.1|485095_487201_+	ribonucleotide-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
VEG25260.1|487320_488292_+	ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
VEG25261.1|488668_489640_+	FatD	NA	A0A2H4IY97	uncultured_Caudovirales_phage	80.2	7.8e-141
VEG25262.1|489626_490583_+	Iron compound ABC uptake transporter permease protein	NA	A0A2H4J116	uncultured_Caudovirales_phage	60.0	5.5e-06
VEG25263.1|490579_491341_+	Iron compound ABC uptake transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.1	7.2e-17
>prophage 6
LR134351	Staphylococcus aureus strain NCTC13811 genome assembly, chromosome: 1	2955381	755348	763821	2955381		Synechococcus_phage(33.33%)	9	NA	NA
VEG25639.1|755348_755831_+	AIR carboxylase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	8.0e-22
VEG25641.1|755817_756942_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	NA	NA	NA	NA
VEG25643.1|756945_757650_+	Phosphoribosylaminoimidazole-succinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	41.6	7.3e-48
VEG25645.1|757649_757913_+	Phosphoribosylformylglycinamidine synthase, PurS subunit	NA	NA	NA	NA	NA
VEG25647.1|757914_758586_+	Phosphoribosylformylglycinamidine synthase	NA	NA	NA	NA	NA
VEG25649.1|758578_760768_+	Phosphoribosylformylglycinamidine synthase, synthetase subunit	NA	A6N228	Microbacterium_phage	39.2	5.1e-140
VEG25651.1|760746_762231_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.4	8.5e-46
VEG25653.1|762223_763252_+	Phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	7.6e-62
VEG25654.1|763254_763821_+	Phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	3.6e-29
>prophage 7
LR134351	Staphylococcus aureus strain NCTC13811 genome assembly, chromosome: 1	2955381	964095	1027640	2955381	lysis,tRNA,transposase,protease	Cafeteria_roenbergensis_virus(13.33%)	54	NA	NA
VEG25964.1|964095_965382_+|protease	Membrane-associated zinc metalloprotease	protease	NA	NA	NA	NA
VEG25970.1|965401_967105_+|tRNA	Prolyl-tRNA synthetase	tRNA	NA	NA	NA	NA
VEG25975.1|967362_971679_+	DNA polymerase III subunit alpha	NA	A0A0A8WJ41	Clostridium_phage	41.2	3.5e-23
VEG25977.1|971968_972436_+	Putative cytosolic protein	NA	NA	NA	NA	NA
VEG25979.1|972456_973632_+	Transcription termination protein NusA	NA	NA	NA	NA	NA
VEG25981.1|973652_973937_+	nucleic-acid-binding protein implicated in transcription termination	NA	NA	NA	NA	NA
VEG25983.1|973933_974251_+	ribosomal protein L7Ae family protein	NA	NA	NA	NA	NA
VEG25985.1|974255_976373_+	protein translation initiation factor 2 (IF-2)	NA	E3T4N3	Cafeteria_roenbergensis_virus	25.1	2.4e-25
VEG25987.1|976759_977110_+	ribosome-binding factor A	NA	NA	NA	NA	NA
VEG25988.1|977279_978197_+|tRNA	tRNA pseudouridine synthase B	tRNA	NA	NA	NA	NA
VEG25990.1|978211_979183_+	Riboflavin kinase / FMN adenylyltransferase	NA	A0A1V0SJE1	Klosneuvirus	32.1	1.7e-07
VEG25992.1|979297_979567_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
VEG25994.1|982267_983941_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
VEG25996.1|984197_986567_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	47.7	7.3e-84
VEG25998.1|986571_987285_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
VEG26000.1|987315_988581_+|protease	Zinc protease	protease	A0A1X9I714	Streptococcus_phage	26.8	1.2e-40
VEG26002.1|988580_989867_+	peptidase, M16 family	NA	G3MBJ8	Bacillus_virus	27.9	6.7e-15
VEG26004.1|989866_990571_+	3-oxoacyl-[acyl-carrier protein] reductase	NA	NA	NA	NA	NA
VEG26006.1|990675_991503_+	protein with ACT domain	NA	NA	NA	NA	NA
VEG26008.1|991521_991914_+	DNA-binding protein	NA	NA	NA	NA	NA
VEG26010.1|991947_992526_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
VEG26012.1|992750_993902_+	Competence/damage-inducible protein CinA	NA	NA	NA	NA	NA
VEG26014.1|994066_995110_+	recombinase A	NA	A0A0S2MVG1	Bacillus_phage	69.2	9.3e-124
VEG26016.1|995463_997023_+	Hydrolase (HAD superfamily)	NA	NA	NA	NA	NA
VEG26018.1|997318_997534_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEG26020.1|997707_998505_+	Phosphoesterase family protein	NA	NA	NA	NA	NA
VEG26022.1|998644_1000405_+	2-oxoacid ferredoxin oxidoreductase subunit alpha	NA	NA	NA	NA	NA
VEG26024.1|1000405_1001272_+	2-oxoglutarate oxidoreductase, beta subunit	NA	NA	NA	NA	NA
VEG26026.1|1001366_1001660_+	Uncharacterized conserved protein	NA	NA	NA	NA	NA
VEG26028.1|1001793_1003338_+|tRNA	tRNA-i(6)A37 methylthiotransferase	tRNA	NA	NA	NA	NA
VEG26030.1|1003338_1003704_+	membrane protein	NA	NA	NA	NA	NA
VEG26032.1|1003730_1004222_+	Substrate-specific component ThiWthiazole ECF transporter	NA	NA	NA	NA	NA
VEG26034.1|1004524_1007143_+	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	23.7	3.8e-41
VEG26036.1|1007155_1009165_+	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	30.2	4.1e-59
VEG26038.1|1009179_1009713_+	glycerol uptake operon antiterminator regulatory protein	NA	NA	NA	NA	NA
VEG26040.1|1010187_1011006_+	Glycerol uptake facilitator protein	NA	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	35.1	3.1e-26
VEG26042.1|1011135_1012632_+	glycerol kinase	NA	NA	NA	NA	NA
VEG26044.1|1012789_1014463_+	Glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
VEG26046.1|1014609_1015527_+	hydrolase	NA	NA	NA	NA	NA
VEG26048.1|1015544_1016480_+|tRNA	tRNA delta(2)-isopentenylpyrophosphate transferase	tRNA	NA	NA	NA	NA
VEG26050.1|1016494_1016728_+	RNA-binding protein Hfq	NA	NA	NA	NA	NA
VEG26052.1|1016949_1017426_-	Glutathione peroxidase family protein	NA	Q70H87	Fowlpox_virus	38.0	1.2e-22
VEG26054.1|1017537_1018776_+	GTP-binding protein	NA	NA	NA	NA	NA
VEG26056.1|1018794_1020033_+	aluminum resistance protein, putative	NA	NA	NA	NA	NA
VEG26058.1|1020276_1020645_+	FemC, factor involved in methicillin resistance / Glutamine synthetase repressor	NA	NA	NA	NA	NA
VEG26060.1|1020663_1022004_+	glutamine synthetase	NA	NA	NA	NA	NA
VEG26062.1|1022497_1022695_+	Uncharacterised protein	NA	A0A1W6JNK0	Staphylococcus_phage	48.4	1.7e-10
VEG26064.1|1022986_1023340_-|transposase	putative transposase	transposase	Q9MBM9	Staphylococcus_prophage	46.6	1.1e-17
VEG26066.1|1023503_1024007_-|transposase	putative transposase	transposase	NA	NA	NA	NA
VEG26068.1|1024115_1024472_-	lipoprotein	NA	NA	NA	NA	NA
VEG26070.1|1024527_1025118_-	transposon-related protein	NA	NA	NA	NA	NA
VEG26072.1|1025124_1026171_-|lysis	putative cell wall lysis protein	lysis	A0A1X9I9L1	Staphylococcus_phage	36.9	8.1e-19
VEG26074.1|1026160_1026523_-	putative mating channel protein	NA	NA	NA	NA	NA
VEG26075.1|1026692_1027640_+|transposase	transposase	transposase	Q9MBM9	Staphylococcus_prophage	100.0	1.1e-184
>prophage 8
LR134351	Staphylococcus aureus strain NCTC13811 genome assembly, chromosome: 1	2955381	1038656	1070633	2955381	head,transposase,protease	Staphylococcus_phage(20.0%)	40	NA	NA
VEG26097.1|1038656_1039604_-|transposase	transposase	transposase	Q9MBM9	Staphylococcus_prophage	99.7	1.6e-183
VEG26099.1|1040030_1040447_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEG26101.1|1041349_1041553_-|transposase	transposase	transposase	NA	NA	NA	NA
VEG26103.1|1041967_1042219_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEG26105.1|1042423_1042945_+	phage Mu protein F like protein (pseudogene)	NA	A0A1J0MF61	Staphylococcus_phage	51.1	3.1e-43
VEG26107.1|1042946_1043144_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEG26109.1|1043303_1043888_+|head	SPP1 gp7 family Phage head morphogenesis protein	head	NA	NA	NA	NA
VEG26111.1|1043913_1044012_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEG26113.1|1044214_1044412_+	phage Mu protein F like protein (pseudogene)	NA	A0A1J0MFV1	Staphylococcus_phage	61.5	2.3e-15
VEG26115.1|1044740_1044935_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEG26117.1|1045147_1045381_+|head	putative phage head morphogenesis protein	head	Q4ZE35	Staphylococcus_virus	76.9	2.1e-12
VEG26119.1|1045565_1045679_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEG26121.1|1045691_1045940_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEG26123.1|1046090_1046369_+|head	SPP1 gp7 family Phage head morphogenesis protein	head	NA	NA	NA	NA
VEG26125.1|1046414_1046681_+|head	phage head morphogenesis, SPP1 gp7 family domain protein	head	NA	NA	NA	NA
VEG26127.1|1046677_1046815_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEG26129.1|1047361_1048387_-	Low-specificity L-threonine aldolase	NA	NA	NA	NA	NA
VEG26131.1|1048656_1048854_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEG26133.1|1048910_1050392_+	Cardiolipin synthase	NA	NA	NA	NA	NA
VEG26135.1|1050574_1051474_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	27.6	9.7e-21
VEG26137.1|1051442_1052174_+	ABC transporter permease protein	NA	NA	NA	NA	NA
VEG26139.1|1052177_1053269_+	sensor kinase	NA	NA	NA	NA	NA
VEG26141.1|1053265_1053868_+	DNA-binding response regulator	NA	NA	NA	NA	NA
VEG26143.1|1053980_1054169_-	membrane protein	NA	NA	NA	NA	NA
VEG26145.1|1054307_1054841_+	Thermonuclease	NA	A0A1P8CWK6	Bacillus_phage	43.5	3.4e-21
VEG26147.1|1054983_1055838_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEG26149.1|1056159_1056744_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEG26151.1|1056797_1058180_-	aspartate kinase	NA	NA	NA	NA	NA
VEG26153.1|1058370_1059651_+	Homoserine dehydrogenase	NA	NA	NA	NA	NA
VEG26155.1|1059656_1060718_+	Threonine synthase	NA	NA	NA	NA	NA
VEG26157.1|1060719_1061634_+	Homoserine kinase	NA	NA	NA	NA	NA
VEG26159.1|1061691_1062495_+	Hydrolase (HAD superfamily)	NA	NA	NA	NA	NA
VEG26161.1|1062786_1063101_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEG26163.1|1063319_1064774_-	gamma-aminobutyrate permease	NA	NA	NA	NA	NA
VEG26165.1|1064977_1066495_+	Catalase	NA	A0A2K9L0T1	Tupanvirus	43.8	2.7e-92
VEG26167.1|1066585_1066735_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
VEG26169.1|1067188_1067458_+	30S ribosomal protein S14	NA	NA	NA	NA	NA
VEG26171.1|1067614_1068592_+	putative GMP reductase	NA	Q4ZCY7	Staphylococcus_virus	99.7	8.0e-186
VEG26173.1|1068766_1069630_+	SCP family extracellular protein	NA	U5Q0C0	Bacillus_phage	41.5	1.2e-15
VEG26175.1|1070009_1070633_-|protease	SOS-response repressor and protease LexA	protease	A0A1B2APZ1	Phage_Wrath	63.8	3.5e-17
>prophage 9
LR134351	Staphylococcus aureus strain NCTC13811 genome assembly, chromosome: 1	2955381	1227308	1312352	2955381	head,tail,integrase,portal,protease,terminase,holin,tRNA,capsid	Staphylococcus_phage(79.22%)	99	1262073:1262101	1306723:1306751
VEG26400.1|1227308_1228601_-|tRNA	asparaginyl-tRNA synthetase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	4.3e-54
VEG26402.1|1228922_1231616_-	dinG family ATP-dependent helicase YoaA	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
VEG26404.1|1231639_1232611_-	Biotin-protein ligase / Biotin operon repressor	NA	NA	NA	NA	NA
VEG26405.1|1232597_1233800_-	poly A polymerase family protein	NA	H7BUW3	unidentified_phage	42.5	1.4e-35
VEG26407.1|1233804_1234947_-	glycosyl transferase	NA	NA	NA	NA	NA
VEG26409.1|1235190_1235508_-	Pyrophosphohydrolase, MazG family	NA	NA	NA	NA	NA
VEG26411.1|1235843_1236542_-	Neutral zinc metallopeptidase family	NA	NA	NA	NA	NA
VEG26412.1|1236595_1237183_-	membrane protein	NA	NA	NA	NA	NA
VEG26414.1|1237172_1237790_-	Putative cytosolic protein	NA	G3MAV7	Bacillus_virus	27.2	5.0e-08
VEG26416.1|1237761_1239006_-	TPR-repeat-containing protein, putative component of Menaquinone-cytochrome C reductase	NA	NA	NA	NA	NA
VEG26418.1|1239012_1240311_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
VEG26420.1|1240320_1241385_-	3-dehydroquinate synthase	NA	NA	NA	NA	NA
VEG26422.1|1241410_1242577_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.3	1.5e-34
VEG26424.1|1243045_1243495_-	Nucleoside diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
VEG26426.1|1243586_1244546_-	Farnesyl pyrophosphate synthetase	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
VEG26428.1|1244547_1245273_-	Ubiquinone/menaquinone biosynthesis methyltransferase UbiE	NA	NA	NA	NA	NA
VEG26430.1|1245275_1245848_-	heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 family protein	NA	NA	NA	NA	NA
VEG26432.1|1246278_1246551_-	DNA-binding protein II HBsu	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
VEG26434.1|1246721_1247720_-	Glycerol-3-phosphate dehydrogenase (NAD(P)+)	NA	NA	NA	NA	NA
VEG26436.1|1247736_1249047_-	GTP-binding protein EngA	NA	NA	NA	NA	NA
VEG26438.1|1249268_1250444_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
VEG26440.1|1251155_1251815_-	Cytidylate kinase	NA	NA	NA	NA	NA
VEG26442.1|1251891_1252860_+	L-asparaginase	NA	NA	NA	NA	NA
VEG26444.1|1252974_1253961_-	thioredoxin reductase	NA	NA	NA	NA	NA
VEG26446.1|1254345_1255806_-	elastin binding protein ebpS	NA	NA	NA	NA	NA
VEG26448.1|1255958_1257338_-	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.3	2.9e-56
VEG26450.1|1257327_1258281_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEG26452.1|1258388_1258637_+	Ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
VEG26454.1|1258742_1259288_-	riboflavin transporter	NA	NA	NA	NA	NA
VEG26456.1|1259935_1260844_-	lipoprotein	NA	NA	NA	NA	NA
VEG26458.1|1260901_1261807_-	lipoprotein	NA	NA	NA	NA	NA
VEG26460.1|1261896_1262112_-	lipoprotein	NA	A0ZS61	Staphylococcus_virus	100.0	2.0e-25
1262073:1262101	attL	AAATAAACATATCATCATAATGAGATGGT	NA	NA	NA	NA
VEG26462.1|1262484_1263321_-	Uncharacterised protein	NA	D2JLG6	Staphylococcus_phage	100.0	8.4e-152
VEG26464.1|1263698_1264454_-	Autolysin	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
VEG26466.1|1264465_1264720_-|holin	Phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
VEG26467.1|1265260_1265560_-	hypothetical phage-related protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
VEG26469.1|1265605_1265770_-	phage protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
VEG26471.1|1265762_1266152_-	phage protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
VEG26473.1|1266151_1267618_-|tail	putative phage tail protein	tail	M1TB09	Staphylococcus_phage	100.0	2.7e-254
VEG26475.1|1267617_1269528_-	putative minor structural protein	NA	A0A2I6PF35	Staphylococcus_phage	100.0	0.0e+00
VEG26477.1|1269543_1269834_-	putative gp53	NA	A0A2I6PF46	Staphylococcus_phage	100.0	2.1e-49
VEG26478.1|1269833_1271417_-|tail	prophage endopeptidase tail family protein	tail	A0A2I6PEQ5	Staphylococcus_phage	100.0	9.3e-309
VEG26480.1|1271425_1272250_-|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
VEG26482.1|1272249_1278450_-	TP901 family prophage L54a	NA	U5U762	Staphylococcus_phage	98.4	0.0e+00
VEG26484.1|1278463_1278622_-	putative gp49	NA	A0A2I6PES8	Staphylococcus_phage	92.3	6.0e-19
VEG26486.1|1278663_1279014_-	putative gp48	NA	A0A2I6PDE6	Staphylococcus_phage	100.0	1.1e-55
VEG26488.1|1279071_1279527_-|tail	major tail protein	tail	Q9B0D4	Staphylococcus_phage	98.0	7.0e-76
VEG26490.1|1279618_1280260_-|tail	major tail protein	tail	A0A2I6PE59	Staphylococcus_phage	97.2	4.7e-118
VEG26492.1|1280294_1280690_-	phage protein	NA	A0A2I6PDD8	Staphylococcus_phage	100.0	2.6e-66
VEG26494.1|1280690_1281092_-	putative phiSLT protein	NA	A0A2I6PDD3	Staphylococcus_phage	100.0	6.2e-68
VEG26496.1|1281088_1281421_-	phage protein	NA	A0A2I6PEA5	Staphylococcus_phage	100.0	3.1e-57
VEG26498.1|1281432_1281711_-|head,tail	phage gp6-like head-tail connector family protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
VEG26500.1|1281779_1282943_-|capsid	putative phage capsid protein	capsid	A0A2I6PEQ3	Staphylococcus_phage	100.0	1.2e-217
VEG26502.1|1282954_1283728_-|protease	phage protease	protease	A0A2I6PEQ7	Staphylococcus_phage	100.0	2.4e-137
VEG26504.1|1283711_1284950_-|portal	portal protein	portal	A0A2K9VBP0	Staphylococcus_phage	99.5	2.0e-234
VEG26506.1|1284954_1286646_-|terminase	terminase large subunit	terminase	A0A2K9VBQ1	Staphylococcus_phage	100.0	0.0e+00
VEG26508.1|1286635_1286941_-|terminase	Phage terminase small subunit	terminase	U5U414	Staphylococcus_phage	100.0	2.9e-49
VEG26510.1|1287065_1287386_-	HNH endonuclease family protein	NA	A0A2K9VBV6	Staphylococcus_phage	99.1	1.1e-56
VEG26512.1|1287542_1287980_-	phage regulatory protein	NA	Q4ZCF5	Staphylococcus_virus	99.3	4.6e-77
VEG26514.1|1287992_1289351_-	putative DNA helicase	NA	Q4ZCM9	Staphylococcus_virus	99.6	4.7e-261
VEG26516.1|1289340_1289631_-	VRR-NUC domain-containing protein	NA	U5U7A3	Staphylococcus_phage	100.0	4.9e-51
VEG26518.1|1289971_1292419_-	E family protein	NA	B5WZN5	Staphylococcus_phage	99.3	0.0e+00
VEG26520.1|1292471_1292672_-	putative exported phage protein	NA	A0A2I6PF41	Staphylococcus_phage	100.0	2.9e-26
VEG26522.1|1292739_1292895_-	transcriptional activator rinB-like protein	NA	B5WZN3	Staphylococcus_phage	100.0	1.2e-19
VEG26524.1|1292884_1293121_-	phage protein	NA	A7TWB3	Staphylococcus_phage	100.0	1.9e-37
VEG26526.1|1293145_1293382_-	phage protein	NA	C8CH06	Staphylococcus_phage	98.7	3.1e-35
VEG26528.1|1293418_1293955_-	dUTPase family protein	NA	S4V978	Staphylococcus_phage	98.9	1.0e-94
VEG26530.1|1293947_1294130_-	Uncharacterised protein	NA	D2JGL7	Staphylococcus_phage	100.0	2.6e-26
VEG26532.1|1294119_1294371_-	Phage protein	NA	W5R8J0	Staphylococcus_phage	100.0	4.9e-39
VEG26534.1|1294385_1294628_-	phage family protein	NA	A0A2D1G5G2	Staphylococcus_phage	98.8	5.6e-40
VEG26536.1|1294642_1294843_-	phage protein	NA	A0A2I6PEM3	Staphylococcus_phage	100.0	2.5e-30
VEG26538.1|1294845_1295103_-	phage protein	NA	A0A2I6PEN5	Staphylococcus_phage	98.8	1.3e-42
VEG26540.1|1295102_1295504_-	putative phi PVL-like protein	NA	A0A2I6PEL5	Staphylococcus_phage	100.0	1.2e-68
VEG26542.1|1295503_1295689_-	phage protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
VEG26543.1|1295701_1297663_-	DNA polymerase	NA	A0A2I6PE86	Staphylococcus_phage	100.0	0.0e+00
VEG26545.1|1297721_1298279_-	phage protein	NA	A0A2I6PEP8	Staphylococcus_phage	100.0	1.8e-97
VEG26547.1|1298304_1299471_-	PD-(D/E)XK nuclease superfamily protein	NA	B5WZM3	Staphylococcus_phage	100.0	8.3e-222
VEG26549.1|1299467_1299830_-	phage protein	NA	A0A0K1LKE9	Staphylococcus_phage	98.3	5.4e-55
VEG26551.1|1299844_1300168_-	phage protein	NA	A0A2I6PE70	Staphylococcus_phage	100.0	6.5e-52
VEG26553.1|1300246_1300408_-	phage protein	NA	A7TWM3	Staphylococcus_phage	100.0	8.6e-21
VEG26555.1|1300420_1300684_-	DNA-binding protein	NA	A7TWG0	Staphylococcus_phage	100.0	5.7e-46
VEG26557.1|1300708_1300924_-	phage protein	NA	A0A2I6PF01	Staphylococcus_phage	100.0	1.9e-31
VEG26559.1|1300978_1301344_+	phage protein	NA	A0A2I6PF07	Staphylococcus_phage	100.0	2.4e-63
VEG26561.1|1301312_1301558_-	phage protein	NA	A0A2I6PF15	Staphylococcus_phage	100.0	5.1e-41
VEG26563.1|1301624_1302005_+	phage protein	NA	Q4ZCQ5	Staphylococcus_virus	100.0	5.8e-68
VEG26565.1|1301991_1302189_-	phage protein	NA	A7TWF5	Staphylococcus_phage	100.0	4.6e-24
VEG26567.1|1302258_1302471_+	putative uracil-DNA glycosylase	NA	D2JGJ1	Staphylococcus_phage	100.0	7.6e-33
VEG26569.1|1302511_1302661_-	phage protein	NA	D2JGJ0	Staphylococcus_phage	100.0	1.4e-20
VEG26571.1|1302675_1303119_-	hypothetical phage-related protein	NA	A7TWF2	Staphylococcus_phage	100.0	8.9e-76
VEG26573.1|1303166_1303379_-	helix-turn-helix family protein	NA	A7TWF1	Staphylococcus_phage	100.0	1.6e-30
VEG26575.1|1303530_1304262_+	helix-turn-helix family protein	NA	S4SVC5	Staphylococcus_phage	99.2	1.3e-132
VEG26577.1|1304331_1304514_+	Putative cytosolic protein	NA	A0A2I6PDR4	Staphylococcus_phage	100.0	5.3e-27
VEG26579.1|1304571_1304697_+	ORF136	NA	A0A2I6PEK8	Staphylococcus_phage	100.0	3.3e-12
VEG26580.1|1304693_1305308_-	phi PVL ORF 30-like protein	NA	A0A2I6PEZ0	Staphylococcus_phage	100.0	6.7e-106
VEG26582.1|1305433_1306639_+|integrase	integrase	integrase	A0A2I6PEN0	Staphylococcus_phage	100.0	7.7e-223
VEG26585.1|1306681_1308724_-	lipoprotein	NA	B5WZK7	Staphylococcus_phage	44.1	1.1e-38
1306723:1306751	attR	AAATAAACATATCATCATAATGAGATGGT	NA	NA	NA	NA
VEG26587.1|1308710_1309643_-	putative lipoprotein	NA	NA	NA	NA	NA
VEG26589.1|1309894_1311646_-	ResE	NA	A0A1V0SGX0	Hokovirus	33.6	1.7e-21
VEG26591.1|1311626_1312352_-	transcriptional regulator srrA	NA	W8CYM9	Bacillus_phage	43.0	3.5e-45
>prophage 10
LR134351	Staphylococcus aureus strain NCTC13811 genome assembly, chromosome: 1	2955381	1370194	1378506	2955381	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
VEG26724.1|1370194_1370980_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
VEG26726.1|1371105_1371996_-	endonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
VEG26728.1|1372005_1373352_-	ATP-dependent RNA helicase YqfR	NA	A0A1V0SIR5	Klosneuvirus	34.0	1.4e-55
VEG26730.1|1373465_1374566_-	NIF3 protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	3.0e-08
VEG26732.1|1374568_1375246_-|tRNA	Putative tRNA-m1A22 methylase	tRNA	NA	NA	NA	NA
VEG26734.1|1375376_1376483_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
VEG26736.1|1376706_1378506_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.5e-54
>prophage 11
LR134351	Staphylococcus aureus strain NCTC13811 genome assembly, chromosome: 1	2955381	1447941	1456984	2955381	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
VEG26899.1|1447941_1448460_-	Adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
VEG26901.1|1448481_1450755_-	Single-stranded-DNA-specific exonuclease recJ	NA	A7KV88	Bacillus_phage	29.3	6.2e-64
VEG26903.1|1450957_1453237_-	Protein-export membrane protein secD / Protein-export membrane protein secF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
VEG26905.1|1453511_1453772_-	Preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
VEG26907.1|1453790_1454930_-|tRNA	queuine tRNA-ribosyltransferase	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
VEG26909.1|1454952_1455978_-|tRNA	S-adenosylmethionine--tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
VEG26911.1|1455979_1456984_-	Holliday junction DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 12
LR134351	Staphylococcus aureus strain NCTC13811 genome assembly, chromosome: 1	2955381	1593206	1662113	2955381	tRNA,transposase,protease	Staphylococcus_phage(93.48%)	69	NA	NA
VEG27137.1|1593206_1599776_-	putative surface anchored protein	NA	A0A2H4PQU6	Staphylococcus_phage	88.7	1.7e-295
VEG27139.1|1600099_1600411_-	Rhodanese-like domain protein	NA	A0A2H4PQR9	Staphylococcus_phage	96.1	4.5e-50
VEG27140.1|1600432_1602850_-|tRNA	Leucyl-tRNA synthetase	tRNA	A0A2H4PQS0	Staphylococcus_phage	98.8	0.0e+00
VEG27142.1|1603138_1604320_-	Multidrug resistance protein	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	9.6e-218
VEG27144.1|1604430_1605384_+	Fe-S oxidoreductase	NA	A0A2H4PQV5	Staphylococcus_phage	99.3	6.4e-79
VEG27146.1|1605380_1605944_+	SAM-dependent methyltransferase, MraW methylase family	NA	A0A2H4PQV0	Staphylococcus_phage	95.7	1.1e-99
VEG27148.1|1606062_1606464_-	HTH-type transcriptional regulator rot	NA	NA	NA	NA	NA
VEG27150.1|1607036_1607864_-	Lysophospholipase; Monoglyceride lipase; putative	NA	NA	NA	NA	NA
VEG27152.1|1608097_1609099_+	Proline dehydrogenase (Proline oxidase)	NA	A0A2H4PQT6	Staphylococcus_phage	99.1	5.0e-183
VEG27154.1|1609220_1609685_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	97.4	1.9e-68
VEG27156.1|1609697_1610879_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
VEG27158.1|1610889_1611522_-	Riboflavin synthase alpha chain	NA	A0A2H4PQS5	Staphylococcus_phage	99.0	8.4e-112
VEG27160.1|1611528_1612572_-	5-amino-6-(5-phosphoribosylamino)uracil reductase	NA	A0A2H4PQS8	Staphylococcus_phage	98.3	5.9e-195
VEG27162.1|1613052_1614555_-	pyridine nucleotide-disulfide oxidoreductase family protein	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	5.0e-30
VEG27164.1|1615197_1615512_+	arsenical resistance operon repressor 2	NA	A0A2H4PQT4	Staphylococcus_phage	97.1	1.7e-52
VEG27166.1|1615511_1616804_+	arsenical pump membrane protein	NA	A0A2H4PQU3	Staphylococcus_phage	95.1	2.6e-216
VEG27168.1|1616890_1617745_-	peptidoglycan endo-beta-N-acetylglucosaminidase	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
VEG27170.1|1618020_1618245_-	putative staphylococcal protein	NA	NA	NA	NA	NA
VEG27172.1|1618443_1618914_+	DNA-binding protein	NA	A0A2H4PQT5	Staphylococcus_phage	85.8	7.7e-70
VEG27174.1|1619026_1619470_+	comK family protein	NA	NA	NA	NA	NA
VEG27176.1|1619456_1619900_-	membrane protein	NA	A0A2H4PQT8	Staphylococcus_phage	77.4	2.4e-49
VEG27178.1|1620197_1620833_+|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
VEG27180.1|1620999_1621620_+	membrane protein	NA	NA	NA	NA	NA
VEG27182.1|1622077_1622791_-	Transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
VEG27184.1|1623049_1623352_+	membrane protein	NA	NA	NA	NA	NA
VEG27186.1|1623606_1623972_+	CrcB family protein	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
VEG27188.1|1623968_1624322_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	97.4	4.2e-20
VEG27190.1|1624571_1625405_-	aldo/keto reductase family protein	NA	A0A2H4PQR8	Staphylococcus_phage	99.6	1.2e-158
VEG27192.1|1625616_1626525_-	Uncharacterised protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.7	9.8e-138
VEG27194.1|1626649_1627843_-	S-adenosylmethionine synthase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	4.3e-218
VEG27196.1|1628214_1629807_+	phosphoenolpyruvate carboxykinase	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
VEG27198.1|1630099_1630870_-	Dipeptidyl aminopeptidase/acylaminoacyl-peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	97.2	3.4e-139
VEG27200.1|1630850_1631330_-	phosphohydrolase	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	3.0e-85
VEG27201.1|1631389_1631647_+	Putative cytosolic protein	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
VEG27202.1|1631643_1632645_-	O-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	96.7	8.5e-183
VEG27203.1|1632649_1634128_-	O-succinylbenzoic acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.2	2.4e-282
VEG27205.1|1634286_1634769_-	putative lipoprotein	NA	A0A2H4PQN7	Staphylococcus_phage	94.5	2.8e-75
VEG27206.1|1635079_1635694_+	endonuclease	NA	A0A2H4PQM8	Staphylococcus_phage	87.3	3.6e-43
VEG27207.1|1635774_1636770_+	Telomeric repeat-binding factor 2	NA	A0A2H4PQN2	Staphylococcus_phage	97.2	3.8e-74
VEG27209.1|1636845_1637472_+	lipoprotein	NA	A0A2H4PQM7	Staphylococcus_phage	84.1	4.5e-81
VEG27210.1|1637512_1637857_+	Uncharacterised protein	NA	A0A2H4PQN6	Staphylococcus_phage	94.7	5.1e-55
VEG27211.1|1637954_1638527_+	Uncharacterised protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.8	3.2e-25
VEG27212.1|1638675_1640043_-	FRG domain-containing protein	NA	NA	NA	NA	NA
VEG27213.1|1640042_1640612_-	Domain of uncharacterised function (DUF955)	NA	A0A2H4PQN8	Staphylococcus_phage	54.8	2.2e-39
VEG27215.1|1640804_1641251_-	Protein of uncharacterised function (DUF1433)	NA	NA	NA	NA	NA
VEG27216.1|1641332_1641557_-|transposase	transposase	transposase	NA	NA	NA	NA
VEG27217.1|1642195_1642639_-	exported protein	NA	NA	NA	NA	NA
VEG27218.1|1642638_1643082_-	exported protein	NA	NA	NA	NA	NA
VEG27219.1|1643081_1643402_-	putative protein with DUF1433	NA	NA	NA	NA	NA
VEG27221.1|1644048_1646067_+	hyaluronate lyase	NA	NA	NA	NA	NA
VEG27222.1|1646108_1646468_+	hyaluronate lyase	NA	NA	NA	NA	NA
VEG27223.1|1646593_1646971_-	exported protein	NA	NA	NA	NA	NA
VEG27225.1|1647180_1647630_-	exported protein	NA	NA	NA	NA	NA
VEG27227.1|1647672_1648302_+	pathogenicity island protein	NA	NA	NA	NA	NA
VEG27229.1|1648246_1649284_+	pathogenicity island protein	NA	NA	NA	NA	NA
VEG27231.1|1649298_1649598_+	ESAT-6 family protein	NA	NA	NA	NA	NA
VEG27233.1|1649859_1651677_-	KAP family P-loop domain	NA	NA	NA	NA	NA
VEG27235.1|1651713_1652868_-	type I restriction modification DNA specificity protein	NA	A0A2H4PQP5	Staphylococcus_phage	36.3	7.8e-39
VEG27237.1|1652860_1654417_-	Type I restriction enzyme EcoprrI M protein	NA	A0A2H4PQP4	Staphylococcus_phage	98.6	2.2e-286
VEG27239.1|1654779_1655499_-|protease	Serine protease splD	protease	A0A2H4PQP1	Staphylococcus_phage	98.3	1.0e-129
VEG27241.1|1655668_1656385_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	97.1	6.6e-129
VEG27243.1|1656548_1656773_-	serine proteinase	NA	A0A2H4PQN0	Staphylococcus_phage	55.4	3.6e-17
VEG27245.1|1656922_1657264_-	serine proteinase	NA	A0A2H4PQN5	Staphylococcus_phage	76.9	2.1e-40
VEG27247.1|1657430_1658147_-|protease	serine protease SplB	protease	A0A2H4PQN5	Staphylococcus_phage	62.6	5.5e-83
VEG27249.1|1658270_1658990_-|protease	Serine protease splC	protease	A0A2H4PQP7	Staphylococcus_phage	93.7	6.4e-124
VEG27251.1|1659047_1659212_-	splB protein	NA	A0A2H4PQN0	Staphylococcus_phage	97.7	5.9e-17
VEG27252.1|1659290_1659536_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEG27253.1|1660004_1660520_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEG27254.1|1660766_1662113_+	exported protein	NA	M1NRY5	Streptococcus_phage	51.1	2.5e-65
>prophage 13
LR134351	Staphylococcus aureus strain NCTC13811 genome assembly, chromosome: 1	2955381	1697085	1770976	2955381	head,tail,integrase,terminase,holin,tRNA,capsid	Staphylococcus_phage(71.64%)	86	1740126:1740140	1777853:1777867
VEG27321.1|1697085_1697556_-|tRNA	tRNA (cytosine34-2-O-)-methyltransferase	tRNA	NA	NA	NA	NA
VEG27325.1|1697560_1698688_-	iron-sulfur cluster-binding protein	NA	NA	NA	NA	NA
VEG27330.1|1698838_1699567_-	Glutamine transport ATP-binding protein glnQ	NA	G9BWD6	Planktothrix_phage	42.7	1.0e-36
VEG27335.1|1699553_1701011_-	extracellular glutamine-binding protein	NA	NA	NA	NA	NA
VEG27337.1|1701269_1702331_-	Regulatory protein	NA	NA	NA	NA	NA
VEG27339.1|1711143_1711590_-	Peroxide stress regulator PerR, FUR family	NA	NA	NA	NA	NA
VEG27341.1|1711686_1712646_-	D-3-phosphoglycerate dehydrogenase	NA	NA	NA	NA	NA
VEG27343.1|1712642_1713098_-	Thiol peroxidase, Bcp-type	NA	NA	NA	NA	NA
VEG27344.1|1713178_1714468_+	Glutamate-1-semialdehyde aminotransferase	NA	NA	NA	NA	NA
VEG27346.1|1714709_1715855_+	integral membrane protein	NA	NA	NA	NA	NA
VEG27348.1|1716045_1717782_-	Lipid A export ATP-binding/permease protein MsbA	NA	W8CYL7	Bacillus_phage	30.4	1.7e-53
VEG27350.1|1718072_1718615_-	Putative cytosolic protein	NA	NA	NA	NA	NA
VEG27352.1|1718917_1719955_-	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
VEG27354.1|1720106_1721084_+	membrane-bound metal-dependent hydrolase	NA	NA	NA	NA	NA
VEG27356.1|1721344_1722181_-	Teichoic acid translocation permease protein TagG	NA	NA	NA	NA	NA
VEG27358.1|1722189_1723707_-	Teichoic acid export ATP-binding protein TagH	NA	NA	NA	NA	NA
VEG27360.1|1723721_1724036_-	transcriptional regulator	NA	NA	NA	NA	NA
VEG27362.1|1724013_1724832_-	Regulatory protein recX	NA	NA	NA	NA	NA
VEG27364.1|1725092_1725902_-	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
VEG27366.1|1726242_1726758_-	ThiJ/PfpI family protein	NA	NA	NA	NA	NA
VEG27368.1|1726887_1727049_-	Putative cytosolic protein	NA	NA	NA	NA	NA
VEG27370.1|1727588_1728203_-	Phage protein	NA	C8CH40	Staphylococcus_phage	100.0	1.0e-109
VEG27372.1|1728199_1728376_-	phage protein	NA	C8CH39	Staphylococcus_phage	100.0	1.2e-23
VEG27374.1|1728840_1729596_-	Autolysin	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
VEG27376.1|1729607_1729862_-|holin	Phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
VEG27378.1|1729918_1730314_-	phi ETA orf 63-like protein	NA	Q4ZBW9	Staphylococcus_virus	100.0	1.6e-68
VEG27380.1|1730318_1731491_-|tail	phage tail fiber protein	tail	A0EWU8	Staphylococcus_virus	100.0	4.1e-197
VEG27382.1|1731503_1733402_-	phage-related cell wall hydrolase	NA	Q8SDT1	Staphylococcus_phage	99.4	0.0e+00
VEG27384.1|1733538_1733838_-	hypothetical phage-related protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
VEG27386.1|1733878_1734055_-	phage protein	NA	Q8LTH6	Staphylococcus_phage	100.0	6.1e-28
VEG27388.1|1734055_1734433_-	SLT orf 129-like protein	NA	A1KX43	Staphylococcus_virus	100.0	2.8e-54
VEG27390.1|1734432_1736256_-	phiETA ORF57-like protein	NA	W5R8J5	Staphylococcus_phage	99.0	2.8e-293
VEG27392.1|1736255_1738166_-	Putative major teichoic acid biosynthesis protein C	NA	Q8SDT4	Staphylococcus_phage	98.6	0.0e+00
VEG27394.1|1738181_1740083_-|tail	prophage endopeptidase tail family protein	tail	Q4ZDU3	Staphylococcus_virus	99.7	0.0e+00
VEG27396.1|1740091_1741039_-	phi 11 orf43	NA	Q4ZDU4	Staphylococcus_virus	100.0	4.7e-183
1740126:1740140	attL	TTTTGTACCGTTTGA	NA	NA	NA	NA
VEG27398.1|1741051_1744483_-	phage tape measure protein	NA	Q4ZDU6	Staphylococcus_virus	91.6	2.2e-262
VEG27400.1|1744499_1744844_-	phi 11 orf41	NA	A0A0F6N3F7	Staphylococcus_phage	100.0	2.5e-57
VEG27402.1|1744873_1745239_-	phi 11 orf40	NA	Q8SDT9	Staphylococcus_phage	100.0	2.8e-59
VEG27404.1|1745300_1745882_-|tail	phage major tail protein, TP901-1 family; phi 11 orf39	tail	A0A0F6N3L8	Staphylococcus_phage	100.0	4.9e-106
VEG27406.1|1745900_1746284_-	phi 11 orf38	NA	A0A0F6N3L1	Staphylococcus_phage	100.0	1.5e-68
VEG27408.1|1746295_1746643_-	phi 11 orf37	NA	A0A0F6N3F5	Staphylococcus_phage	100.0	4.1e-60
VEG27410.1|1746642_1746945_-	phage-like protein	NA	A4ZFB6	Staphylococcus_virus	100.0	1.1e-50
VEG27412.1|1746941_1747274_-	phi 11 orf36	NA	A0A0F6N3F4	Staphylococcus_phage	97.3	3.9e-52
VEG27414.1|1747282_1747570_-	phage-like protein	NA	B7T0D3	Staphylococcus_virus	90.5	1.1e-42
VEG27416.1|1747591_1748566_-|capsid,head	Phage head protein/Phage major capsid protein	capsid,head	E0Y3L0	Staphylococcus_virus	99.1	2.4e-182
VEG27418.1|1748579_1749200_-	phi 11 orf33	NA	S4V984	Staphylococcus_phage	98.5	8.6e-69
VEG27420.1|1749308_1749479_-	Uncharacterised protein	NA	A0A0F6N3E9	Staphylococcus_phage	100.0	1.5e-23
VEG27422.1|1749551_1750547_-|head	phage putative head morphogenesis protein, SPP1 gp7 family Mu50B	head	B2ZYY2	Staphylococcus_phage	100.0	3.4e-184
VEG27424.1|1750553_1752092_-	phage-like protein	NA	S4V6D8	Staphylococcus_phage	99.4	3.8e-291
VEG27426.1|1752102_1753392_-|terminase	phage-associated terminase large subunit	terminase	B7T0C6	Staphylococcus_virus	98.6	9.0e-254
VEG27428.1|1753394_1753889_-|terminase	Phage terminase, small subunit	terminase	B7T0C5	Staphylococcus_virus	98.2	8.6e-88
VEG27430.1|1754075_1754495_-	mobile-element-associated regulatory protein	NA	I1W651	Staphylococcus_phage	100.0	8.1e-71
VEG27432.1|1754509_1754656_-	phage protein	NA	Q4ZBJ8	Staphylococcus_phage	95.8	1.3e-15
VEG27434.1|1754656_1754830_-	transcriptional activator rinb-like protein	NA	Q4ZAX6	Staphylococcus_virus	98.2	1.1e-21
VEG27436.1|1754826_1755216_-	phage membrane protein	NA	A7TWI1	Staphylococcus_phage	97.7	1.5e-63
VEG27438.1|1755205_1755442_-	phage protein	NA	Q4ZDP0	Staphylococcus_virus	100.0	2.8e-36
VEG27440.1|1755434_1755638_-	Uncharacterised protein	NA	B2ZYX5	Staphylococcus_phage	98.5	8.8e-31
VEG27442.1|1755634_1755841_-	phage protein	NA	Q4ZCV6	Staphylococcus_virus	95.6	2.3e-18
VEG27444.1|1755877_1756420_-	deoxyuridine 5'-triphosphate nucleotidohydrolase	NA	A0EWY2	Staphylococcus_phage	100.0	1.1e-96
VEG27446.1|1756412_1756595_-	Uncharacterised protein	NA	A0EWY1	Staphylococcus_phage	100.0	2.6e-26
VEG27448.1|1756584_1756836_-	Phage protein	NA	A0EWY0	Staphylococcus_phage	100.0	1.9e-38
VEG27450.1|1756828_1756993_-	Uncharacterised protein	NA	A0EWX9	Staphylococcus_phage	100.0	1.7e-24
VEG27452.1|1757007_1757250_-	phage family protein	NA	A0EWX8	Staphylococcus_phage	100.0	3.9e-41
VEG27454.1|1757253_1757622_-	Phage protein	NA	W5RAK8	Staphylococcus_phage	100.0	8.2e-51
VEG27456.1|1757734_1757944_-	Phage protein	NA	A0EWX6	Staphylococcus_phage	98.5	3.1e-31
VEG27458.1|1757952_1758171_-	phage protein	NA	A0A2I6PDG4	Staphylococcus_phage	98.6	1.2e-36
VEG27460.1|1758177_1759062_-	Phage protein	NA	A0EWX4	Staphylococcus_phage	100.0	5.4e-141
VEG27462.1|1759091_1759562_-	Single-stranded DNA-binding protein, phage associated	NA	A0EWX3	Staphylococcus_phage	100.0	7.4e-81
VEG27464.1|1759562_1760048_-	Metallo-beta-lactamase superfamily domain protein in prophage	NA	S4SWA4	Staphylococcus_phage	100.0	9.4e-87
VEG27465.1|1760260_1761181_-	recombinase, phage RecT family protein	NA	S4SUN6	Staphylococcus_phage	100.0	2.3e-166
VEG27467.1|1761182_1763126_-	Uncharacterized conserved protein	NA	A0EWX0	Staphylococcus_phage	100.0	0.0e+00
VEG27468.1|1763134_1763398_-	phage protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
VEG27470.1|1763406_1763670_-	Putative cytosolic protein	NA	A0EWW8	Staphylococcus_phage	100.0	9.0e-44
VEG27472.1|1763647_1763974_-	phage protein	NA	W5RAK4	Staphylococcus_phage	100.0	1.2e-53
VEG27474.1|1764222_1764444_-	phage protein	NA	B2ZYU8	Staphylococcus_phage	100.0	8.7e-32
VEG27476.1|1764514_1765180_+	hypothetical phage-related protein	NA	Q9G033	Staphylococcus_virus	98.6	1.2e-116
VEG27478.1|1765299_1765494_-	phage protein	NA	A0A1X9H0A2	Staphylococcus_phage	98.4	3.3e-19
VEG27480.1|1765510_1766275_-	Antirepressor	NA	R4IFK0	Staphylococcus_phage	98.4	1.2e-139
VEG27482.1|1766274_1766469_-	helix-turn-helix domain protein	NA	A0A0F6N3M9	Staphylococcus_phage	96.9	6.9e-25
VEG27484.1|1766731_1767064_+	Transcriptional regulator, Cro/CI family helix-turn-helix domain protein	NA	R4IH08	Staphylococcus_phage	98.2	2.0e-56
VEG27486.1|1767080_1767755_+	phage protein	NA	A0A0F6N3H6	Staphylococcus_phage	94.6	5.2e-120
VEG27488.1|1767783_1768509_+	phage protein	NA	A0A0F6N4L7	Staphylococcus_phage	95.4	7.4e-120
VEG27490.1|1768559_1768694_+	Uncharacterised protein	NA	A0A0E3T9H0	Staphylococcus_phage	100.0	2.6e-15
VEG27492.1|1768725_1769658_+	phage protein	NA	A0EX19	Staphylococcus_virus	100.0	6.7e-174
VEG27493.1|1769637_1769817_-	Excisionase	NA	Q4ZBP0	Staphylococcus_phage	100.0	3.7e-25
VEG27495.1|1769929_1770976_+|integrase	phage integrase family protein	integrase	Q4ZB10	Staphylococcus_virus	100.0	5.5e-201
1777853:1777867	attR	TTTTGTACCGTTTGA	NA	NA	NA	NA
>prophage 14
LR134351	Staphylococcus aureus strain NCTC13811 genome assembly, chromosome: 1	2955381	1792333	1883277	2955381	head,transposase,tail,protease,terminase,holin,tRNA,capsid	Staphylococcus_phage(76.54%)	111	NA	NA
VEG27541.1|1792333_1793761_-|tRNA	aspartyl/glutamyl-tRNA amidotransferase subunit B	tRNA	NA	NA	NA	NA
VEG27543.1|1793773_1795231_-|tRNA	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A	tRNA	NA	NA	NA	NA
VEG27545.1|1795232_1795535_-|tRNA	Aspartyl-tRNA(Asn) amidotransferase subunit C; Glutamyl-tRNA(Gln) amidotransferase subunit C	tRNA	NA	NA	NA	NA
VEG27547.1|1795901_1797440_+	Sodium/proline symporter	NA	NA	NA	NA	NA
VEG27549.1|1797528_1798728_-	Lipoprotein (pheromone precursor)	NA	NA	NA	NA	NA
VEG27551.1|1798740_1800744_-	DNA ligase	NA	A0A0K2QQN8	Ralstonia_phage	36.1	9.8e-114
VEG27553.1|1800747_1802940_-	ATP-dependent DNA helicase UvrD/PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
VEG27555.1|1802936_1803629_-	geranylgeranylglyceryl diphosphate synthase	NA	NA	NA	NA	NA
VEG27557.1|1803800_1804103_-	His repressor	NA	NA	NA	NA	NA
VEG27559.1|1804211_1805507_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
VEG27561.1|1806356_1807523_+	Staphopain A precursor	NA	NA	NA	NA	NA
VEG27563.1|1807553_1807877_+|protease	putative cysteine protease inhibitor (Staphostatin A)	protease	NA	NA	NA	NA
VEG27565.1|1808170_1808344_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEG27567.1|1808324_1808927_-	Uncharacterized protein conserved in bacteria (DUF2179)	NA	NA	NA	NA	NA
VEG27569.1|1809196_1810018_-	NH(3)-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	2.3e-69
VEG27571.1|1810010_1811480_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	44.5	8.5e-107
VEG27573.1|1811663_1812740_+	nitric-oxide synthase	NA	NA	NA	NA	NA
VEG27575.1|1812759_1813554_+	ACT domain protein	NA	NA	NA	NA	NA
VEG27577.1|1813743_1815306_-	sodium-dependent dicarboxylate transporter sdcS	NA	NA	NA	NA	NA
VEG27579.1|1815510_1816608_-	cell wall surface anchor family protein	NA	U5PWM6	Bacillus_phage	34.6	8.7e-48
VEG27581.1|1816980_1817541_+	Nicotinamidase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
VEG27583.1|1817593_1818523_+	inorganic pyrophosphatase	NA	NA	NA	NA	NA
VEG27585.1|1818941_1820321_+	Aldehyde dehydrogenase	NA	NA	NA	NA	NA
VEG27587.1|1820440_1821469_-	6-phosphogluconolactonase	NA	NA	NA	NA	NA
VEG27588.1|1821739_1822141_+	yolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
VEG27590.1|1822197_1822371_-	exported protein	NA	NA	NA	NA	NA
VEG27592.1|1822749_1823862_+	choloylglycine hydrolase	NA	NA	NA	NA	NA
VEG27594.1|1823918_1824761_-	exported protein	NA	NA	NA	NA	NA
VEG27596.1|1824757_1825315_-	Predicted membrane protein	NA	NA	NA	NA	NA
VEG27598.1|1825374_1825899_-	membrane protein	NA	NA	NA	NA	NA
VEG27600.1|1826019_1826583_+	Thioredoxin	NA	NA	NA	NA	NA
VEG27602.1|1826646_1827387_-	ABC-2 transporter family protein	NA	NA	NA	NA	NA
VEG27604.1|1827386_1828259_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
VEG27606.1|1828255_1828936_-	membrane protein	NA	NA	NA	NA	NA
VEG27608.1|1828936_1829833_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
VEG27610.1|1829829_1830210_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
VEG27612.1|1830467_1830644_-	membrane protein	NA	NA	NA	NA	NA
VEG27614.1|1831183_1832470_+	Aspartate aminotransferase	NA	NA	NA	NA	NA
VEG27616.1|1832717_1834364_-|transposase	transposase	transposase	A0ZS58	Staphylococcus_virus	99.8	7.9e-295
VEG27618.1|1834661_1836731_-	MHC class II antigen-like protein	NA	NA	NA	NA	NA
VEG27620.1|1837116_1837317_+	phospholipase C	NA	A0A1P8L6A7	Staphylococcus_phage	95.4	4.9e-26
VEG27622.1|1838491_1838842_-	Involved in expression of fibrinogen binding protein, phage associated	NA	A7TWS0	Staphylococcus_phage	100.0	7.5e-54
VEG27624.1|1839352_1839652_-	amidase	NA	A0A1P8L6B4	Staphylococcus_phage	97.0	2.8e-49
VEG27625.1|1840294_1840786_-	Staphylokinase	NA	A7TWR8	Staphylococcus_phage	100.0	8.0e-86
VEG27627.1|1840976_1841732_-	Autolysin	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
VEG27629.1|1841743_1841998_-|holin	Phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
VEG27630.1|1842494_1843268_-	enterotoxin P, phage associated	NA	A0A068A244	Staphylococcus_phage	100.0	1.7e-146
VEG27631.1|1843385_1843562_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEG27632.1|1843688_1844063_-	phage protein	NA	G4KNR3	Staphylococcus_phage	98.4	1.6e-38
VEG27633.1|1844118_1844406_-	phi PVL ORF 22-like protein	NA	G4KNR2	Staphylococcus_phage	98.9	3.8e-43
VEG27634.1|1844452_1844605_-	phage protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
VEG27635.1|1844594_1848380_-	phage minor structural protein	NA	D2JLF9	Staphylococcus_phage	99.2	0.0e+00
VEG27636.1|1848395_1849880_-	bacteriophage protein	NA	A0A2I6PDJ0	Staphylococcus_phage	99.6	7.6e-297
VEG27637.1|1849876_1854406_-|tail	TP901 family phage tail tape measure protein	tail	A0EX03	Staphylococcus_phage	98.7	0.0e+00
VEG27638.1|1854462_1854600_-	phage protein	NA	A0A2I6PDX7	Staphylococcus_phage	100.0	3.4e-18
VEG27639.1|1854650_1855001_-	phage protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
VEG27640.1|1855316_1855961_-|tail	phage major tail protein	tail	W5R9H4	Staphylococcus_phage	100.0	6.5e-120
VEG27641.1|1855961_1856369_-	putative bacteriophage protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
VEG27642.1|1856365_1856770_-	phage protein	NA	A0A1W6JPJ1	Staphylococcus_phage	100.0	2.5e-69
VEG27643.1|1856766_1857129_-|head,tail	phage head-tail adaptor	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
VEG27644.1|1857112_1857397_-	Gp6 protein	NA	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
VEG27645.1|1857386_1857671_-|terminase	phage terminase small subunit	terminase	A0A1W6JPL8	Staphylococcus_phage	100.0	2.3e-45
VEG27646.1|1857690_1858911_-|capsid	Phage major capsid protein	capsid	A0A075LYD8	Staphylococcus_phage	98.5	5.2e-227
VEG27647.1|1858858_1859596_-	ATP-dependent endopeptidase clp proteolytic subunit	NA	C8CH20	Staphylococcus_phage	99.6	8.8e-129
VEG27648.1|1859579_1860767_-	Portal protein, phage associated	NA	A0A2I6PDI1	Staphylococcus_phage	99.7	3.0e-219
VEG27649.1|1860782_1862444_-|terminase	Phage terminase large subunit	terminase	Q8LTH3	Staphylococcus_phage	99.8	0.0e+00
VEG27650.1|1862440_1862785_-	phage protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
VEG27651.1|1862914_1863214_-	phage-associated homing endonuclease	NA	G4KNP8	Staphylococcus_phage	100.0	4.6e-52
VEG27652.1|1863445_1863862_-	phage transcriptional regulator	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
VEG27653.1|1863889_1864090_-	phage protein	NA	D2JLD9	Staphylococcus_phage	98.5	5.3e-28
VEG27654.1|1864089_1864239_-	transcriptional activator RinB family protein	NA	A0A1W6JPZ2	Staphylococcus_phage	98.0	8.2e-18
VEG27655.1|1864235_1864442_-	Protein of uncharacterised function (DUF1381)	NA	Q6R823	Staphylococcus_virus	91.2	4.2e-20
VEG27656.1|1864438_1864684_-	phage-like protein	NA	Q9B0F1	Staphylococcus_virus	86.4	2.1e-26
VEG27657.1|1864720_1865251_-	deoxyuridine 5'-triphosphate nucleotidohydrolase	NA	C8CH05	Staphylococcus_phage	100.0	1.7e-94
VEG27658.1|1865243_1865492_-	Phage protein	NA	Q9B0F3	Staphylococcus_virus	93.9	1.1e-35
VEG27659.1|1865484_1865856_-	acetyltransferase family protein	NA	A0ZS31	Staphylococcus_virus	97.6	4.2e-63
VEG27660.1|1865864_1866107_-	phage conserved Open Reading Frame 51	NA	A0A0H4ITW9	Staphylococcus_phage	97.5	4.7e-39
VEG27661.1|1866110_1866467_-	PVL ORF-50 family protein	NA	M1RZB8	Staphylococcus_phage	98.3	4.6e-59
VEG27662.1|1866467_1866653_-	PV83 orf 23-like protein	NA	M1SNY0	Staphylococcus_phage	100.0	1.4e-27
VEG27663.1|1866657_1867062_-	putative phi ETA-like protein	NA	Q4ZAR7	Staphylococcus_virus	99.3	3.4e-66
VEG27664.1|1867072_1867294_-	putative phi ETA-like protein	NA	Q9G021	Staphylococcus_phage	98.6	1.9e-34
VEG27665.1|1867306_1867465_-	Uncharacterised protein	NA	Q4ZBL5	Staphylococcus_phage	98.1	4.5e-22
VEG27666.1|1867461_1868247_-	ORF017	NA	A0A059T7P1	Staphylococcus_phage	99.2	7.9e-144
VEG27667.1|1868259_1868991_-	Uncharacterised protein	NA	A0A1J0MGB2	Staphylococcus_phage	67.6	7.1e-70
VEG27668.1|1868983_1869658_-	phage protein	NA	Q4ZCW9	Staphylococcus_virus	97.3	7.6e-127
VEG27669.1|1869671_1870088_-	phage single-stranded DNA-binding protein	NA	Q9B0G2	Staphylococcus_virus	83.7	3.3e-56
VEG27670.1|1870087_1870735_-	ERF superfamily	NA	A0A0F6N3I5	Staphylococcus_phage	96.3	6.4e-115
VEG27671.1|1870735_1871272_-	bacteriophage Mu Gam-like protein	NA	A0A0F6N4M6	Staphylococcus_phage	96.1	9.4e-80
VEG27672.1|1871284_1871545_-	putative phi PVL-like protein	NA	A0A2H4PQR7	Staphylococcus_phage	100.0	3.4e-43
VEG27673.1|1871637_1871799_-	phage protein	NA	Q4ZAZ7	Staphylococcus_virus	100.0	2.5e-20
VEG27674.1|1871795_1872116_-	Uncharacterized protein conserved in bacteria	NA	A0A1W6JPI1	Staphylococcus_phage	99.1	1.1e-54
VEG27675.1|1872145_1872364_-	phi PV83 orf 10-like protein	NA	A0A068A2A3	Staphylococcus_phage	100.0	8.6e-32
VEG27676.1|1872360_1872687_-	Uncharacterised protein	NA	G4KNN2	Staphylococcus_phage	100.0	5.4e-54
VEG27677.1|1872742_1873060_+	Uncharacterised protein	NA	A0ZS13	Staphylococcus_virus	99.0	7.1e-51
VEG27678.1|1873013_1873253_-	Uncharacterised protein	NA	A0ZS12	Staphylococcus_virus	100.0	2.9e-33
VEG27679.1|1873486_1873747_-	putative phi PVL-like protein	NA	A0A2I6PDT7	Staphylococcus_phage	100.0	3.5e-40
VEG27680.1|1873759_1874509_-	putative phage anti-repressor protein	NA	Q8SDM9	Staphylococcus_phage	99.6	4.4e-136
VEG27681.1|1874565_1874775_+	Uncharacterised protein	NA	A0A2I6PDR8	Staphylococcus_phage	100.0	9.1e-31
VEG27682.1|1874767_1874908_-	phage protein	NA	A0A2I6PDT8	Staphylococcus_phage	100.0	1.9e-16
VEG27683.1|1874922_1875366_-	hypothetical phage-related protein	NA	Q6R853	Staphylococcus_virus	99.3	7.5e-75
VEG27684.1|1875378_1875621_-	phage DNA-binding protein	NA	A0A1X9H035	Staphylococcus_phage	100.0	1.6e-39
VEG27685.1|1875784_1876501_+	putative phage repressor protein	NA	A0A1X9H038	Staphylococcus_phage	100.0	5.4e-131
VEG27686.1|1876512_1877367_+	HIRAN domain-containing protein	NA	A0A1X9H037	Staphylococcus_phage	94.7	2.1e-150
VEG27687.1|1877440_1877587_+	phage protein	NA	A0A1X9H032	Staphylococcus_phage	100.0	3.3e-19
VEG27688.1|1877583_1877769_+	phage protein	NA	U5U7D6	Staphylococcus_phage	100.0	2.3e-25
VEG27689.1|1877839_1878022_+	Putative cytosolic protein	NA	A0A2I6PDF8	Staphylococcus_phage	98.3	9.1e-27
VEG27690.1|1878099_1878813_+	phi77 ORF017-like protein	NA	A0A1X9H026	Staphylococcus_phage	100.0	5.0e-129
VEG27691.1|1879003_1880041_+	DNA integration/recombination/inversion protein	NA	A0A1X9H022	Staphylococcus_phage	99.7	7.7e-179
VEG27692.1|1880081_1880924_+	phospholipase C	NA	A0A1P8L6H7	Staphylococcus_phage	99.3	2.8e-155
VEG27693.1|1881180_1882200_-	leukocidin-protein 1	NA	A0A2I6PEU3	Staphylococcus_phage	39.6	3.4e-54
VEG27694.1|1882221_1883277_-	Leukocidin S subunit	NA	A0A2I6PER8	Staphylococcus_phage	34.6	7.9e-38
>prophage 15
LR134351	Staphylococcus aureus strain NCTC13811 genome assembly, chromosome: 1	2955381	1890967	1926526	2955381	transposase,integrase,terminase,protease	Staphylococcus_phage(52.0%)	40	1885204:1885224	1925340:1925360
1885204:1885224	attL	TGTTGGGGCCCCGCCAACTTG	NA	NA	NA	NA
VEG27703.1|1890967_1891195_-	pathogenicity island protein	NA	A0A2H4JAH5	uncultured_Caudovirales_phage	47.4	1.9e-13
VEG27705.1|1891613_1892318_+	toxic shock syndrome toxin-1	NA	NA	NA	NA	NA
VEG27707.1|1892472_1893042_-|terminase	putative phage terminase	terminase	Q4ZE85	Staphylococcus_phage	98.4	3.5e-101
VEG27709.1|1893038_1893380_-|transposase	transposase	transposase	A0A1W6JQM3	Staphylococcus_phage	100.0	1.7e-58
VEG27711.1|1893382_1893910_-	pathogenicity island protein	NA	A0A1W6JQH7	Staphylococcus_phage	97.1	3.5e-87
VEG27713.1|1893960_1894179_-	hypothetical mobile element-associated protein	NA	NA	NA	NA	NA
VEG27714.1|1894196_1894775_-|transposase	transposase	transposase	A0A2H4JBG0	uncultured_Caudovirales_phage	38.4	1.4e-28
VEG27715.1|1894786_1895128_-	pathogenicity island protein	NA	Q4ZE66	Staphylococcus_phage	98.2	7.1e-57
VEG27717.1|1895663_1896305_-|transposase	transposase	transposase	Q4ZE67	Staphylococcus_phage	94.4	1.0e-112
VEG27719.1|1896301_1896682_-	pathogenicity island protein	NA	Q4ZE71	Staphylococcus_phage	100.0	6.9e-69
VEG27721.1|1896993_1898703_-	pathogenicity island protein	NA	Q4ZE73	Staphylococcus_phage	100.0	0.0e+00
VEG27723.1|1898716_1899586_-	mobile element-associated protein	NA	Q4ZE74	Staphylococcus_phage	99.3	6.0e-169
VEG27725.1|1899649_1899967_-	pathogenicity island protein	NA	A0A1W6JQH0	Staphylococcus_phage	58.2	1.6e-18
VEG27727.1|1899967_1900351_-	pathogenicity island protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.1	9.7e-63
VEG27729.1|1900352_1900556_-	pathogenicity island protein	NA	A0A1W6JQF4	Staphylococcus_phage	97.0	7.5e-30
VEG27731.1|1900540_1900696_-	hypothetical bovine pathogenicity island protein	NA	NA	NA	NA	NA
VEG27733.1|1900692_1901010_-	mobile element-associated transcriptional regulator, putative	NA	A0A1W6JQE0	Staphylococcus_phage	98.1	9.2e-51
VEG27734.1|1901014_1901233_-	mobile element-associated transcriptional regulator, putative	NA	A0A2H4JB11	uncultured_Caudovirales_phage	66.7	1.3e-19
VEG27736.1|1901405_1902080_+	mobile element-associated transcriptional regulator, putative	NA	A0A2H4JGT9	uncultured_Caudovirales_phage	45.8	1.6e-39
VEG27738.1|1902093_1903266_+|integrase	mobile element-associated integrase, putative	integrase	A0A1W6JQD3	Staphylococcus_phage	98.2	3.5e-220
VEG27740.1|1903334_1904951_-	heat shock protein 60 family chaperone GroEL	NA	A0A240F779	uncultured_virus	54.7	2.6e-157
VEG27742.1|1905026_1905311_-	Heat shock protein 60 family co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
VEG27744.1|1905485_1906229_+	abortive infection protein	NA	NA	NA	NA	NA
VEG27746.1|1906253_1907468_-	membrane anchored protein	NA	NA	NA	NA	NA
VEG27748.1|1907664_1908291_+	nitroreductase family protein	NA	NA	NA	NA	NA
VEG27750.1|1908651_1909437_+	Aliphatic amidase amiE	NA	NA	NA	NA	NA
VEG27752.1|1910355_1910973_+	accessory gene regulator protein B	NA	NA	NA	NA	NA
VEG27753.1|1910976_1911117_+	AgrD protein	NA	NA	NA	NA	NA
VEG27754.1|1911141_1912434_+	AgrC protein	NA	NA	NA	NA	NA
VEG27756.1|1912452_1913169_+	accessory gene regulator protein A	NA	A0A2H4J4Z6	uncultured_Caudovirales_phage	32.6	2.3e-25
VEG27758.1|1913542_1914502_-	Fructokinase	NA	NA	NA	NA	NA
VEG27760.1|1914498_1915992_-	sucrose-6-phosphate hydrolase	NA	S6ATV4	Bacillus_phage	25.8	5.2e-19
VEG27766.1|1916131_1917082_-	Sucrose operon repressor ScrR, LacI family	NA	NA	NA	NA	NA
VEG27769.1|1917265_1918516_-	ammonium transporter family protein	NA	H8ZJB2	Ostreococcus_tauri_virus	31.2	9.0e-41
VEG27773.1|1918724_1918949_-	transcriptional regulator	NA	NA	NA	NA	NA
VEG27775.1|1919008_1920088_-	putative transport system permease protein	NA	NA	NA	NA	NA
VEG27777.1|1920392_1921028_-	Redox-sensitive transcriptional regulator (AT-rich DNA-binding protein)	NA	NA	NA	NA	NA
VEG27779.1|1921280_1923209_+	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	30.1	3.2e-53
VEG27781.1|1923576_1925187_+	MutS-related protein, family 1	NA	A0A0N9R0S5	Chrysochromulina_ericina_virus	27.4	5.1e-20
VEG27783.1|1925500_1926526_-|protease	glycoprotease	protease	A0A0R6PI74	Moraxella_phage	40.9	3.1e-63
1925340:1925360	attR	CAAGTTGGCGGGGCCCCAACA	NA	NA	NA	NA
>prophage 16
LR134351	Staphylococcus aureus strain NCTC13811 genome assembly, chromosome: 1	2955381	2934947	2954740	2955381	integrase	Staphylococcus_phage(89.19%)	37	2926560:2926574	2936500:2936514
2926560:2926574	attL	ATTGTCTGCACTAAT	NA	NA	NA	NA
VEG29646.1|2934947_2936153_-|integrase	phage integrase family protein	integrase	A0A1X9H094	Staphylococcus_phage	99.8	1.5e-221
VEG29648.1|2936278_2936887_+	Uncharacterised protein	NA	B7T0F3	Staphylococcus_virus	98.0	6.4e-101
2936500:2936514	attR	ATTGTCTGCACTAAT	NA	NA	NA	NA
VEG29650.1|2937046_2937229_-	Putative cytosolic protein	NA	A0A2I6PDR4	Staphylococcus_phage	100.0	5.3e-27
VEG29653.1|2937299_2938070_-	putative phage PVL repressor protein	NA	A0A1X9H0P5	Staphylococcus_phage	95.7	1.7e-135
VEG29657.1|2938229_2938451_+	putative cro repressor	NA	A0A1X9H090	Staphylococcus_phage	100.0	7.6e-36
VEG29659.1|2938474_2938921_+	phage protein	NA	A0A1X9H091	Staphylococcus_phage	99.3	7.3e-78
VEG29661.1|2938937_2939138_+	Uncharacterised protein	NA	A7TWL8	Staphylococcus_phage	51.8	2.2e-05
VEG29663.1|2939121_2939376_-	Uncharacterised protein	NA	A7TWL9	Staphylococcus_phage	76.0	3.6e-29
VEG29665.1|2939435_2940212_+	Rha family phage regulatory protein	NA	A0A2D1G5J2	Staphylococcus_phage	87.2	2.2e-122
VEG29667.1|2940225_2940441_+	pathogenicity island protein	NA	Q4ZCA9	Staphylococcus_virus	58.6	6.7e-13
VEG29669.1|2940493_2940634_+	phage protein	NA	A0A2I6PDG0	Staphylococcus_phage	95.7	9.4e-16
VEG29671.1|2940648_2941281_-	phage protein	NA	A7TW95	Staphylococcus_phage	92.4	7.6e-105
VEG29673.1|2941336_2941663_+	Uncharacterised protein	NA	G4KNN2	Staphylococcus_phage	100.0	5.4e-54
VEG29675.1|2941659_2941878_+	phi PV83 orf 10-like protein	NA	A0A068A2A3	Staphylococcus_phage	100.0	8.6e-32
VEG29678.1|2941907_2942171_+	DNA-binding protein	NA	A7TWG0	Staphylococcus_phage	98.9	7.4e-46
VEG29680.1|2942183_2942345_+	phage protein	NA	A7TWM3	Staphylococcus_phage	100.0	8.6e-21
VEG29682.1|2942423_2942747_+	phage protein	NA	A0A2I6PE70	Staphylococcus_phage	100.0	6.5e-52
VEG29684.1|2942761_2943124_+	phage protein	NA	A0A0K1LKE9	Staphylococcus_phage	98.3	5.4e-55
VEG29686.1|2943120_2944287_+	PD-(D/E)XK nuclease superfamily protein	NA	B5WZM3	Staphylococcus_phage	100.0	8.3e-222
VEG29687.1|2944312_2944870_+	phage protein	NA	A0A2I6PEP8	Staphylococcus_phage	100.0	1.8e-97
VEG29689.1|2944928_2946890_+	DNA polymerase	NA	A0A2I6PE86	Staphylococcus_phage	100.0	0.0e+00
VEG29691.1|2946902_2947088_+	phage protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
VEG29693.1|2947087_2947489_+	putative phi PVL-like protein	NA	A0A2I6PEL5	Staphylococcus_phage	100.0	1.2e-68
VEG29695.1|2947488_2947746_+	phage protein	NA	A0A2I6PEN5	Staphylococcus_phage	98.8	1.3e-42
VEG29697.1|2947748_2947949_+	phage protein	NA	A0A2I6PEM3	Staphylococcus_phage	100.0	2.5e-30
VEG29699.1|2947963_2948206_+	phage family protein	NA	A0A2D1G5G2	Staphylococcus_phage	98.8	5.6e-40
VEG29701.1|2948220_2948472_+	Phage protein	NA	W5R8J0	Staphylococcus_phage	100.0	4.9e-39
VEG29703.1|2948461_2948644_+	Uncharacterised protein	NA	D2JGL7	Staphylococcus_phage	100.0	2.6e-26
VEG29705.1|2948636_2949173_+	dUTPase family protein	NA	S4V978	Staphylococcus_phage	98.9	1.0e-94
VEG29707.1|2949209_2949446_+	phage protein	NA	C8CH06	Staphylococcus_phage	98.7	3.1e-35
VEG29709.1|2949470_2949707_+	phage protein	NA	A7TWB3	Staphylococcus_phage	100.0	1.9e-37
VEG29711.1|2949696_2949852_+	transcriptional activator rinB-like protein	NA	B5WZN3	Staphylococcus_phage	100.0	1.2e-19
VEG29713.1|2949919_2950120_+	putative exported phage protein	NA	A0A2I6PF41	Staphylococcus_phage	100.0	2.9e-26
VEG29715.1|2950172_2952620_+	E family protein	NA	B5WZN5	Staphylococcus_phage	99.3	0.0e+00
VEG29717.1|2953238_2954183_+	putative DNA helicase	NA	Q4ZCM9	Staphylococcus_virus	98.7	2.9e-177
VEG29719.1|2954321_2954489_+	putative DNA helicase	NA	Q4ZCM8	Staphylococcus_virus	87.1	5.1e-08
VEG29721.1|2954608_2954740_+	phage regulatory protein	NA	B5WZN8	Staphylococcus_phage	95.2	1.7e-14
