The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR134337	Enterococcus faecium strain NCTC7174 genome assembly, chromosome: 1	2450323	176134	223033	2450323	holin,tRNA,protease,transposase	uncultured_Mediterranean_phage(33.33%)	46	NA	NA
VEF84183.1|176134_177052_-|holin	glycine betaine/carnitine/choline ABC transporter	holin	NA	NA	NA	NA
VEF84184.1|177048_177690_-|holin	glycine betaine/carnitine/choline ABC transporter permease	holin	NA	NA	NA	NA
VEF84185.1|177693_178869_-|holin	glycine betaine/carnitine/choline transporter ATP-binding protein	holin	Q6GZ03	Mycoplasma_phage	32.9	1.0e-17
VEF84186.1|179061_180093_+|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
VEF84187.1|180711_183351_+	calcium-translocating P-type ATPase	NA	M1HX51	Paramecium_bursaria_Chlorella_virus	31.4	7.4e-85
VEF84188.1|183518_184217_-	integral membrane protein	NA	NA	NA	NA	NA
VEF84189.1|184433_185579_+|tRNA	tRNA-guanine transglycosylase	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	40.9	2.5e-82
VEF84190.1|185675_186056_+	preprotein translocase subunit YajC	NA	NA	NA	NA	NA
VEF84191.1|186360_188958_+	aldehyde-alcohol dehydrogenase	NA	NA	NA	NA	NA
VEF84192.1|189186_190293_+	Glycosyl Hydrolase Family 88	NA	NA	NA	NA	NA
VEF84193.1|190309_191338_+	TRAP dicarboxylate transporter subunit DctP	NA	NA	NA	NA	NA
VEF84194.1|191343_191823_+	TRAP dicarboxylate transporter subunit DctQ	NA	NA	NA	NA	NA
VEF84195.1|191838_192618_+	TRAP dicarboxylate transporter subunit DctM	NA	NA	NA	NA	NA
VEF84196.1|192599_192905_+	4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase	NA	NA	NA	NA	NA
VEF84197.1|192921_193728_+	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
VEF84198.1|193847_194912_-	isopentenyl-diphosphate delta-isomerase	NA	NA	NA	NA	NA
VEF84199.1|194908_195994_-	phosphomevalonate kinase	NA	NA	NA	NA	NA
VEF84200.1|196006_196984_-	diphosphomevalonate decarboxylase	NA	NA	NA	NA	NA
VEF84201.1|196976_197921_-	mevalonate kinase	NA	NA	NA	NA	NA
VEF84202.1|198242_198896_+	deoxynucleoside kinase	NA	C1KFI3	Lactobacillus_virus	52.3	1.1e-58
VEF84203.1|198980_199886_+	CorA-like Mg2+ transporter protein	NA	NA	NA	NA	NA
VEF84204.1|199887_200520_-	pentapeptide repeat-containing protein	NA	NA	NA	NA	NA
VEF84205.1|200839_201364_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	33.3	1.4e-14
VEF84206.1|201435_201636_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
VEF84207.1|201688_202048_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
VEF84208.1|202286_204107_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEF84209.1|204398_205736_+	CitMHS family citrate-magnesium (Mg2+):proton (H+) citrate-calcium (Ca2+): proton (H+) symporter	NA	NA	NA	NA	NA
VEF84210.1|205783_207286_+	N-methylhydantoinase	NA	NA	NA	NA	NA
VEF84211.1|207352_207913_+	N-methylhydantoinase	NA	NA	NA	NA	NA
VEF84212.1|207887_208577_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEF84213.1|208984_209671_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
VEF84214.1|209806_209974_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEF84215.1|210050_210491_-	thioesterase	NA	NA	NA	NA	NA
VEF84216.1|210494_211340_-	YjeF protein	NA	NA	NA	NA	NA
VEF84217.1|211488_212907_+	dipeptidase PepV	NA	NA	NA	NA	NA
VEF84218.1|212963_213911_-	family 2 glycosyl transferase	NA	NA	NA	NA	NA
VEF84219.1|214133_214484_-	small secreted protein	NA	NA	NA	NA	NA
VEF84220.1|214683_215763_+	glutamyl aminopeptidase	NA	NA	NA	NA	NA
VEF84221.1|215905_216226_+	thioredoxin	NA	NA	NA	NA	NA
VEF84222.1|216247_216712_+	universal stress family protein	NA	NA	NA	NA	NA
VEF84223.1|216918_217524_+|tRNA	tRNA-binding domain-containing protein	tRNA	NA	NA	NA	NA
VEF84224.1|217562_218843_-|protease	Serine protease do-like htrA	protease	A0A1B1IT49	uncultured_Mediterranean_phage	30.2	5.6e-22
VEF84225.1|219271_219751_+	ribosomal RNA large subunit methyltransferase H	NA	NA	NA	NA	NA
VEF84226.1|219953_220505_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEF84227.1|220575_221745_+|transposase	ISEf1 transposase	transposase	NA	NA	NA	NA
VEF84228.1|221854_223033_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 2
LR134337	Enterococcus faecium strain NCTC7174 genome assembly, chromosome: 1	2450323	228245	273458	2450323	integrase,transposase	Paenibacillus_phage(18.18%)	53	253864:253923	273459:273554
VEF84232.1|228245_228380_+|integrase	integrase/recombinase core domain family protein	integrase	NA	NA	NA	NA
VEF84233.1|228448_228739_+	Transposase	NA	A0A0C5AJ30	Paenibacillus_phage	61.5	9.7e-23
VEF84234.1|228774_229611_+|transposase	transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.1	9.8e-76
VEF84235.1|229758_230334_-	thymidine kinase	NA	A0A249XZX5	Enterococcus_phage	54.5	3.4e-51
VEF84236.1|230457_231015_-|transposase	transposase	transposase	NA	NA	NA	NA
VEF84237.1|231169_231418_+	general stress protein GlsB	NA	NA	NA	NA	NA
VEF84238.1|231617_232022_+	Organic hydroperoxide resistance protein	NA	NA	NA	NA	NA
VEF84239.1|232154_233198_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEF84240.1|233212_233776_+	Type I restriction-modification system, specificity subunit S	NA	NA	NA	NA	NA
VEF84241.1|234092_234602_+	putative cytoplasmic protein	NA	Q9EYF4	Enterobacteria_phage	34.8	2.8e-17
VEF84242.1|234701_235352_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEF84243.1|235801_236740_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
VEF84244.1|236752_237805_+	membrane protein	NA	NA	NA	NA	NA
VEF84245.1|237844_238504_+	membrane protein	NA	NA	NA	NA	NA
VEF84246.1|238694_238958_+	peptide methionine sulfoxide reductase	NA	NA	NA	NA	NA
VEF84247.1|239011_239485_+	peptide methionine sulfoxide reductase	NA	NA	NA	NA	NA
VEF84248.1|240001_241795_+	transcriptional antiterminator bglG	NA	NA	NA	NA	NA
VEF84249.1|241924_242329_+	PTS system, fructose-specific IIA component	NA	NA	NA	NA	NA
VEF84250.1|242464_243643_+|transposase	ISEf1, transposase	transposase	NA	NA	NA	NA
VEF84251.1|243671_244007_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEF84252.1|244336_244645_+	Protein of uncharacterised function (DUF3230).	NA	NA	NA	NA	NA
VEF84253.1|244671_245478_+	4'-phosphopantetheinyl transferase	NA	NA	NA	NA	NA
VEF84254.1|245528_246470_+	amino acid kinase	NA	NA	NA	NA	NA
VEF84255.1|246945_247839_+	ROK family protein	NA	NA	NA	NA	NA
VEF84256.1|247912_249352_+	6-phospho-beta-galactosidase	NA	A0A0B5JD41	Pandoravirus	31.5	1.7e-51
VEF84257.1|249399_249702_+	PTS system transporter subunit IIB	NA	NA	NA	NA	NA
VEF84258.1|249720_251085_+	PTS system, lactose/cellobiose family IIC component	NA	NA	NA	NA	NA
VEF84259.1|251140_251455_+	PTS system cellobiose-specific IIA componenent	NA	NA	NA	NA	NA
VEF84260.1|251788_251956_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
VEF84261.1|251968_252835_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
VEF84262.1|253314_253863_-|integrase	integrase/recombinase core domain family protein	integrase	NA	NA	NA	NA
253864:253923	attL	TTATGGTTACACTCCTTTGTTTTCTTTCGTCGGAAATACAATTTGAGTGTACCATAAATG	NA	NA	NA	NA
VEF84263.1|254049_254313_+	PemI family protein	NA	NA	NA	NA	NA
VEF84264.1|254306_254651_+	PemK family protein	NA	NA	NA	NA	NA
VEF84265.1|254785_255466_-	Integrase core domain protein	NA	A0A1X9I6C6	Streptococcus_phage	98.7	2.2e-126
VEF84266.1|255551_255842_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEF84267.1|256608_256914_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEF84268.1|256959_257241_-	recombinase	NA	A0A1B0V7I5	Salmonella_phage	34.8	9.5e-07
VEF84269.1|257314_257803_-	Putative hydrolase, haloacid dehalogenase family	NA	NA	NA	NA	NA
VEF84270.1|257837_258356_-|transposase	transposase (21)	transposase	NA	NA	NA	NA
VEF84271.1|258520_259258_+	Mobile element protein	NA	A0A1B1P773	Bacillus_phage	39.1	5.0e-23
VEF84272.1|259656_260529_-	fructokinase	NA	NA	NA	NA	NA
VEF84273.1|260792_262739_-	PTS system, sucrose-specific IIA, IIB, IIC component	NA	NA	NA	NA	NA
VEF84274.1|262923_264363_+	Sucrose-6-phosphate hydrolase	NA	NA	NA	NA	NA
VEF84275.1|264364_265327_+	Sucrose operon repressor ScrR, LacI family	NA	C6ZCU4	Enterobacteria_phage	25.8	2.3e-20
VEF84276.1|265832_266300_-|integrase	DNA integrase	integrase	A0A1B1P773	Bacillus_phage	34.8	1.2e-17
VEF84277.1|266341_266812_-|transposase	transposase family protein	transposase	NA	NA	NA	NA
VEF84278.1|267165_267621_+|transposase	transposase, IS200 family	transposase	A0A0H3UZM0	Geobacillus_virus	38.2	4.3e-17
VEF84279.1|267641_267875_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEF84280.1|268666_269485_-	RpiR family phosphosugar-binding transcriptional regulator	NA	NA	NA	NA	NA
VEF84281.1|269645_270335_+	N-acylglucosamine-6-phosphate 2-epimerase	NA	NA	NA	NA	NA
VEF84282.1|270348_271851_+	PTS system transporter subunit IIBC	NA	NA	NA	NA	NA
VEF84283.1|271863_272340_+	PTS system transporter subunit IIA	NA	NA	NA	NA	NA
VEF84284.1|272498_273458_-|integrase	integrase core domain protein	integrase	NA	NA	NA	NA
273459:273554	attR	TTATGGTTACACTCCTTTGTTTTCTTTCGTCGGAAATACAATTTGAGTGTACCATAAATGCCTTTTTATTTTTCTAACTTAATTTTACAATTCGCG	NA	NA	NA	NA
>prophage 3
LR134337	Enterococcus faecium strain NCTC7174 genome assembly, chromosome: 1	2450323	491354	544830	2450323	integrase,tRNA,transposase	Streptococcus_phage(26.32%)	54	488853:488868	554600:554615
488853:488868	attL	TTTTTTGAAAAAAGAA	NA	NA	NA	NA
VEF84489.1|491354_492476_+|tRNA	tRNA-specific 2-thiouridylase MnmA	tRNA	NA	NA	NA	NA
VEF84490.1|492723_494145_+	arginine/ornithine APC family amino acid-polyamine-organocation transporter, antiporter	NA	NA	NA	NA	NA
VEF84491.1|494158_495277_+	aspartate aminotransferase	NA	NA	NA	NA	NA
VEF84492.1|495336_496629_-	multidrug resistance protein	NA	NA	NA	NA	NA
VEF84493.1|496778_497339_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
VEF84494.1|497467_497845_+	superoxide dismutase	NA	NA	NA	NA	NA
VEF84495.1|497879_499850_+	DNA topoisomerase TopB	NA	NA	NA	NA	NA
VEF84496.1|500060_501008_-	glycosyl transferase family protein	NA	V5USA4	Oenococcus_phage	50.7	1.1e-83
VEF84497.1|501252_501717_+	methylated-DNA--protein-cysteine methyltransferase	NA	A0A0G2Y1B6	Acanthamoeba_polyphaga_mimivirus	38.7	1.5e-17
VEF84498.1|501778_502822_-	membrane protein	NA	NA	NA	NA	NA
VEF84499.1|503321_504287_-	C4-dicarboxylate transporter/malic acid transport protein	NA	NA	NA	NA	NA
VEF84500.1|504520_505366_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
VEF84501.1|505556_506744_+	cell cycle protein FtsW	NA	NA	NA	NA	NA
VEF84502.1|506749_507106_+	ArsC family protein	NA	M1PLC0	Streptococcus_phage	42.3	2.7e-22
VEF84503.1|507107_507446_+	glycine cleavage H-protein	NA	NA	NA	NA	NA
VEF84504.1|507831_508875_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.1	5.6e-28
VEF84505.1|508867_509554_+	ABC transporter permease	NA	NA	NA	NA	NA
VEF84506.1|509577_510426_+	putative D-methionine-binding lipoprotein MetQ	NA	NA	NA	NA	NA
VEF84507.1|510622_511396_+	ABC superfamily ATP binding cassette transporter, ABC protein	NA	A0A285PWH2	Cedratvirus	27.3	1.3e-08
VEF84508.1|511408_512695_+	FeS assembly protein SufD	NA	NA	NA	NA	NA
VEF84509.1|512691_513927_+	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	48.2	2.1e-114
VEF84510.1|513913_514384_+	NifU family SUF system FeS assembly protein	NA	NA	NA	NA	NA
VEF84511.1|514388_515780_+	FeS assembly protein SufB	NA	NA	NA	NA	NA
VEF84512.1|515874_517056_-	site-specific tyrosine recombinase XerC-family	NA	A0A1S5S7K9	Streptococcus_phage	34.8	2.6e-58
VEF84513.1|517055_517790_-	Helix-turn-helix.	NA	NA	NA	NA	NA
VEF84514.1|518021_518297_+	DNA binding domain, excisionase family	NA	NA	NA	NA	NA
VEF84515.1|518394_519414_+	Uncharacterised protein	NA	A0A1Z1LZK7	Bacillus_phage	24.8	6.7e-10
VEF84516.1|519519_520392_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEF84517.1|520467_520803_-	Predicted transcription factor, homolog of eukaryotic MBF1	NA	NA	NA	NA	NA
VEF84518.1|520929_521145_+	Predicted transcriptional regulators	NA	A0A139ZPI6	Marinitoga_camini_virus	41.8	6.1e-06
VEF84519.1|521181_521544_+	Predicted membrane protein	NA	NA	NA	NA	NA
VEF84520.1|521589_521916_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEF84521.1|522758_524582_+	PTS system beta-glucoside-specific transporter subunit IIABC	NA	NA	NA	NA	NA
VEF84522.1|524595_526005_+	6-phospho-beta-glucosidase	NA	A0A0B5JD41	Pandoravirus	27.6	3.2e-42
VEF84523.1|526013_526859_+	BglG family transcriptional antiterminator	NA	NA	NA	NA	NA
VEF84524.1|526923_527706_+	botulinum neurotoxin type C1	NA	NA	NA	NA	NA
VEF84525.1|528214_529387_+	type I restriction-modification system, M subunit	NA	A0A2H4PQP4	Staphylococcus_phage	48.4	1.7e-89
VEF84526.1|529444_529699_+	Transposase	NA	A0A1P8CWP5	Bacillus_phage	47.6	2.1e-13
VEF84527.1|529749_530571_+|integrase	integrase catalytic region protein	integrase	A0A1P8CWQ3	Bacillus_phage	54.1	1.6e-75
VEF84528.1|530891_531803_+|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	38.1	6.1e-47
VEF84529.1|532198_532396_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEF84530.1|532692_534240_-	2',3'-cyclic-nucleotide 2'-phosphodiesterase	NA	S4VPC4	Pandoravirus	25.7	4.6e-10
VEF84531.1|534323_535127_-	Predicted phosphohydrolases	NA	NA	NA	NA	NA
VEF84532.1|535129_535912_-	phosphonate ABC transporter, permease PhnE	NA	NA	NA	NA	NA
VEF84533.1|535908_536688_-	phosphonate ABC transporter, permease PhnE	NA	NA	NA	NA	NA
VEF84534.1|536659_537451_-	phosphonate ABC transporter, ATP-binding protein	NA	W5SAS9	Pithovirus	29.5	2.8e-11
VEF84535.1|537511_538441_-	phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein	NA	NA	NA	NA	NA
VEF84536.1|538635_539319_+	cyclic nucleotide-binding domain protein	NA	NA	NA	NA	NA
VEF84537.1|539479_540523_+	basic membrane family protein	NA	NA	NA	NA	NA
VEF84538.1|540604_541363_+|transposase	transposase, IS4 family	transposase	A0A1X9I5T2	Streptococcus_phage	49.6	3.5e-64
VEF84539.1|541735_542050_+|transposase	ISEfa7, transposase	transposase	NA	NA	NA	NA
VEF84540.1|542319_543462_-|integrase	bacteriophage integrase	integrase	A0A1S5S7K9	Streptococcus_phage	36.3	3.6e-60
VEF84541.1|543512_543737_-	transcriptional regulator	NA	NA	NA	NA	NA
VEF84542.1|543993_544830_-|transposase	transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.5	4.0e-77
554600:554615	attR	TTTTTTGAAAAAAGAA	NA	NA	NA	NA
>prophage 4
LR134337	Enterococcus faecium strain NCTC7174 genome assembly, chromosome: 1	2450323	943623	953439	2450323		Streptococcus_phage(50.0%)	9	NA	NA
VEF84931.1|943623_944340_+	response regulator receiver domain-containing protein	NA	W8CYM9	Bacillus_phage	35.7	1.0e-33
VEF84932.1|944339_945788_+	sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.3	1.7e-19
VEF84933.1|945857_946367_-	ABC superfamily ATP binding cassette transporter, ABC protein	NA	NA	NA	NA	NA
VEF84934.1|946356_947082_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEF84935.1|947304_949425_-	sulfatase	NA	W6LM83	Streptococcus_phage	58.1	2.8e-220
VEF84936.1|949654_950833_+	SAM-dependent methyltransferase	NA	W6LLI2	Streptococcus_phage	48.9	5.1e-102
VEF84937.1|950848_951607_+	3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	36.9	8.5e-26
VEF84938.1|951629_952115_+	YbaK/ebsC protein	NA	NA	NA	NA	NA
VEF84939.1|952185_953439_-	HI0933-like protein	NA	A0A2H4PQX1	Staphylococcus_phage	55.3	7.7e-24
>prophage 5
LR134337	Enterococcus faecium strain NCTC7174 genome assembly, chromosome: 1	2450323	1464777	1473840	2450323		Synechococcus_phage(16.67%)	9	NA	NA
VEF85440.1|1464777_1465356_-	Phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	37.4	1.3e-26
VEF85441.1|1465352_1466405_-	Phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D7SE90	Cyanophage	43.7	2.7e-62
VEF85442.1|1466427_1467867_-	Amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.9	3.1e-53
VEF85443.1|1467851_1470074_-	Phosphoribosylformylglycinamidine synthase II	NA	A6N228	Microbacterium_phage	41.4	1.1e-150
VEF85444.1|1470074_1470746_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
VEF85445.1|1470747_1471002_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
VEF85446.1|1471001_1471730_-	Phosphoribosylaminoimidazole-succinocarboxamide synthase	NA	E3SPA9	Prochlorococcus_phage	41.8	9.6e-43
VEF85447.1|1471985_1472363_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEF85448.1|1472544_1473840_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	33.1	1.0e-18
