assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900636945.1_45532_G01	LR134328	Bacillus freudenreichii strain NCTC4823 genome assembly, chromosome: 1	1	373158-373235	1	CRISPRCasFinder	no		WYL,RT,csa3,cas3,DinG,DEDDh,cas2,cas1,cas4,cas7,cas8c,cas5,c2c10_CAS-V-U3	Orphan	CGGTAACTAAGAGAAGGCCTAAGTGA	26	0	0	NA	NA	NA	1	1	Orphan	WYL,RT,csa3,cas3,DinG,DEDDh,cas2,cas1,cas4,cas7,cas8c,cas5,c2c10_CAS-V-U3	NA|52aa|up_9|LR134328.1_360751_360907_-,NA|89aa|up_3|LR134328.1_368081_368348_-,NA	NA|52aa|up_9|LR134328.1_360751_360907_-	NA	NA|208aa|up_8|LR134328.1_360963_361587_-	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]	NA|432aa|up_7|LR134328.1_361729_363025_+	PRK09290, PRK09290, allantoate amidohydrolase; Reviewed	NA|112aa|up_6|LR134328.1_363210_363546_-	pfam11009, DUF2847, Protein of unknown function (DUF2847)	NA|359aa|up_5|LR134328.1_363651_364728_-	COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]	NA|1059aa|up_4|LR134328.1_364971_368148_+	COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	NA|89aa|up_3|LR134328.1_368081_368348_-	NA	NA|496aa|up_2|LR134328.1_368608_370096_+	cd08156, catalase_clade_3, Clade 3 of the heme-binding enzyme catalase	NA|410aa|up_1|LR134328.1_370519_371749_+	PRK08197, PRK08197, threonine synthase; Validated	NA|402aa|up_0|LR134328.1_371788_372994_+	pfam00375, SDF, Sodium:dicarboxylate symporter family	NA|427aa|down_0|LR134328.1_373517_374798_-	PRK10720, PRK10720, uracil transporter; Provisional	NA|411aa|down_1|LR134328.1_375063_376296_-	PRK05469, PRK05469, tripeptide aminopeptidase PepT	NA|107aa|down_2|LR134328.1_376388_376709_-	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|269aa|down_3|LR134328.1_376857_377664_+	COG2514, COG2514, Predicted ring-cleavage extradiol dioxygenase [General function prediction only]	NA|203aa|down_4|LR134328.1_377682_378291_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|323aa|down_5|LR134328.1_378991_379960_+	COG2510, COG2510, Predicted membrane protein [Function unknown]	NA|197aa|down_6|LR134328.1_380294_380885_+	pfam02632, BioY, BioY family	NA|337aa|down_7|LR134328.1_380899_381910_+	PRK06256, PRK06256, biotin synthase; Validated	NA|253aa|down_8|LR134328.1_382288_383047_+	PRK01622, PRK01622, membrane protein insertase YidC	NA|461aa|down_9|LR134328.1_383112_384495_-	PRK09414, PRK09414, NADP-specific glutamate dehydrogenase
GCA_900636945.1_45532_G01	LR134328	Bacillus freudenreichii strain NCTC4823 genome assembly, chromosome: 1	2	3582561-3585453	1,2,1,2	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	RT,cas2,cas1,cas4,cas7,cas8c,cas5,cas3	WYL,RT,csa3,cas3,DinG,DEDDh,cas2,cas1,cas4,cas7,cas8c,cas5,c2c10_CAS-V-U3	Type I-C,Type I-U, Type I-U?	ATTTCAATCCACGCACTCACAAGGAGTGCGAC,ATTTCAATCCACGCACTCACAAGGAGTGCGAC,ATTTCAATCCACGCACTCACAAGGAGTGCGAC,ATTTCAATCCACGCACTCACAAGGAGTGCGAC	32,32,32,32	0	0	NA	NA	I-C:I-C:I-C:I-C	43,43,43,43	43	TypeI-C,TypeI-U,TypeI-U?	WYL,RT,csa3,cas3,DinG,DEDDh,cas2,cas1,cas4,cas7,cas8c,cas5,c2c10_CAS-V-U3	NA|32aa|up_9|LR134328.1_3573813_3573909_-,NA|70aa|down_7|LR134328.1_3593646_3593856_-	NA|32aa|up_9|LR134328.1_3573813_3573909_-	NA	NA|412aa|up_8|LR134328.1_3573927_3575163_-	pfam11579, DUF3238, Protein of unknown function (DUF3238)	NA|317aa|up_7|LR134328.1_3575249_3576200_+	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|322aa|up_6|LR134328.1_3576219_3577185_+	PRK02308, uvsE, putative UV damage endonuclease; Provisional	NA|183aa|up_5|LR134328.1_3577280_3577829_+	COG2322, COG2322, Predicted membrane protein [Function unknown]	NA|263aa|up_4|LR134328.1_3577880_3578669_-	PRK13303, PRK13303, aspartate dehydrogenase	NA|328aa|up_3|LR134328.1_3578796_3579780_-	COG4260, COG4260, Membrane protease subunit, stomatin/prohibitin family [Amino acid    transport and metabolism]	NA|265aa|up_2|LR134328.1_3579797_3580592_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|343aa|up_1|LR134328.1_3580588_3581617_-	pfam08271, TF_Zn_Ribbon, TFIIB zinc-binding	NA|226aa|up_0|LR134328.1_3581751_3582429_-	COG1842, PspA, Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]	cas2|97aa|down_0|LR134328.1_3585625_3585916_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|344aa|down_1|LR134328.1_3585925_3586957_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|227aa|down_2|LR134328.1_3586953_3587634_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|290aa|down_3|LR134328.1_3587599_3588469_-	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8c|632aa|down_4|LR134328.1_3588469_3590365_-	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas5|242aa|down_5|LR134328.1_3590365_3591091_-	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|805aa|down_6|LR134328.1_3591130_3593545_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|70aa|down_7|LR134328.1_3593646_3593856_-	NA	NA|533aa|down_8|LR134328.1_3593839_3595438_-	COG1574, COG1574, Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]	NA|122aa|down_9|LR134328.1_3595587_3595953_-	PRK12586, PRK12586, Na+/H+ antiporter subunit G
GCA_900636945.1_45532_G01	LR134328	Bacillus freudenreichii strain NCTC4823 genome assembly, chromosome: 1	3	3709400-3709506	3	CRISPRCasFinder	no	RT	WYL,RT,csa3,cas3,DinG,DEDDh,cas2,cas1,cas4,cas7,cas8c,cas5,c2c10_CAS-V-U3	Unclear	GCATTAGGACATCCTGTCCGTCGG	24	0	0	NA	NA	NA	1	1	Orphan	WYL,RT,csa3,cas3,DinG,DEDDh,cas2,cas1,cas4,cas7,cas8c,cas5,c2c10_CAS-V-U3	NA,NA|266aa|down_3|LR134328.1_3713928_3714726_-	NA|94aa|up_9|LR134328.1_3695840_3696122_-	COG0864, NikR, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain [Transcription]	NA|390aa|up_8|LR134328.1_3696647_3697817_-	cd00430, PLPDE_III_AR, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase	NA|584aa|up_7|LR134328.1_3698412_3700164_-	COG1001, AdeC, Adenine deaminase [Nucleotide transport and metabolism]	NA|456aa|up_6|LR134328.1_3700191_3701559_-	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|340aa|up_5|LR134328.1_3702002_3703022_-	COG2834, LolA, Outer membrane lipoprotein-sorting protein [Cell envelope biogenesis, outer membrane]	NA|121aa|up_4|LR134328.1_3704239_3704602_-	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional	NA|201aa|up_3|LR134328.1_3704678_3705281_+	pfam01694, Rhomboid, Rhomboid family	NA|494aa|up_2|LR134328.1_3705264_3706746_-	COG3428, COG3428, Predicted membrane protein [Function unknown]	NA|161aa|up_1|LR134328.1_3706738_3707221_-	COG3402, COG3402, Uncharacterized conserved protein [Function unknown]	NA|482aa|up_0|LR134328.1_3707587_3709033_-	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	NA|461aa|down_0|LR134328.1_3709642_3711025_-	COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]	NA|348aa|down_1|LR134328.1_3711040_3712084_-	PRK01966, ddl, D-alanine--D-alanine ligase	NA|392aa|down_2|LR134328.1_3712509_3713685_+	pfam00375, SDF, Sodium:dicarboxylate symporter family	NA|266aa|down_3|LR134328.1_3713928_3714726_-	NA	NA|475aa|down_4|LR134328.1_3714769_3716194_+	TIGR00400, mgtE, Mg2+ transporter (mgtE)	NA|431aa|down_5|LR134328.1_3716578_3717871_+	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|197aa|down_6|LR134328.1_3718044_3718635_+	COG1238, COG1238, Predicted membrane protein [Function unknown]	NA|51aa|down_7|LR134328.1_3718743_3718896_-	COG0766, MurA, UDP-N-acetylglucosamine enolpyruvyl transferase [Cell envelope biogenesis, outer membrane]	RT|421aa|down_8|LR134328.1_3719129_3720392_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|64aa|down_9|LR134328.1_3720988_3721180_-	pfam05532, CsbD, CsbD-like
GCA_900636945.1_45532_G01	LR134328	Bacillus freudenreichii strain NCTC4823 genome assembly, chromosome: 1	5	4081593-4081741	5	CRISPRCasFinder	no	c2c10_CAS-V-U3	WYL,RT,csa3,cas3,DinG,DEDDh,cas2,cas1,cas4,cas7,cas8c,cas5,c2c10_CAS-V-U3	Type V-U3	CTGTTAATCAAACGTTTGTTTAA	23	0	0	NA	NA	NA	2	2	TypeV-U3	WYL,RT,csa3,cas3,DinG,DEDDh,cas2,cas1,cas4,cas7,cas8c,cas5,c2c10_CAS-V-U3	NA|69aa|up_4|LR134328.1_4076001_4076208_-,NA	NA|82aa|up_9|LR134328.1_4072590_4072836_-	pfam04502, DUF572, Family of unknown function (DUF572)	NA|168aa|up_8|LR134328.1_4072885_4073389_-	pfam06271, RDD, RDD family	NA|195aa|up_7|LR134328.1_4073415_4074000_-	PRK08317, PRK08317, hypothetical protein; Provisional	NA|331aa|up_6|LR134328.1_4074162_4075155_+	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family	NA|145aa|up_5|LR134328.1_4075516_4075951_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|69aa|up_4|LR134328.1_4076001_4076208_-	NA	NA|476aa|up_3|LR134328.1_4076267_4077695_-	PRK12273, aspA, aspartate ammonia-lyase; Provisional	c2c10_CAS-V-U3|359aa|up_2|LR134328.1_4078123_4079200_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|264aa|up_1|LR134328.1_4079357_4080149_-	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|448aa|up_0|LR134328.1_4080170_4081514_-	cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA	NA|266aa|down_0|LR134328.1_4082265_4083063_-	cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes	NA|193aa|down_1|LR134328.1_4083474_4084053_-	COG2032, SodC, Cu/Zn superoxide dismutase [Inorganic ion transport and metabolism]	NA|283aa|down_2|LR134328.1_4084221_4085070_+	cd16443, LplA, lipoate-protein ligase	NA|315aa|down_3|LR134328.1_4085056_4086001_+	PRK05481, PRK05481, lipoyl synthase; Provisional	NA|142aa|down_4|LR134328.1_4087022_4087448_-	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|181aa|down_5|LR134328.1_4087518_4088061_-	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|446aa|down_6|LR134328.1_4088243_4089581_-	TIGR00909, putative_amino_acid_transporter, amino acid transporter	NA|494aa|down_7|LR134328.1_4089718_4091200_-	cd07091, ALDH_F1-2_Ald2-like, ALDH subfamily: ALDH families 1and 2, including 10-formyltetrahydrofolate dehydrogenase, NAD+-dependent retinal dehydrogenase 1 and related proteins	NA|458aa|down_8|LR134328.1_4091768_4093142_-	COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]	NA|413aa|down_9|LR134328.1_4093195_4094434_-	PRK09290, PRK09290, allantoate amidohydrolase; Reviewed
GCA_900636945.1_45532_G01	LR134328	Bacillus freudenreichii strain NCTC4823 genome assembly, chromosome: 1	6	4081821-4081975	6	CRISPRCasFinder	no	c2c10_CAS-V-U3	WYL,RT,csa3,cas3,DinG,DEDDh,cas2,cas1,cas4,cas7,cas8c,cas5,c2c10_CAS-V-U3	Type V-U3	CTGTTAATCAAACGTTTGTTTAA	23	0	0	NA	NA	NA	2	2	TypeV-U3	WYL,RT,csa3,cas3,DinG,DEDDh,cas2,cas1,cas4,cas7,cas8c,cas5,c2c10_CAS-V-U3	NA|69aa|up_4|LR134328.1_4076001_4076208_-,NA	NA|82aa|up_9|LR134328.1_4072590_4072836_-	pfam04502, DUF572, Family of unknown function (DUF572)	NA|168aa|up_8|LR134328.1_4072885_4073389_-	pfam06271, RDD, RDD family	NA|195aa|up_7|LR134328.1_4073415_4074000_-	PRK08317, PRK08317, hypothetical protein; Provisional	NA|331aa|up_6|LR134328.1_4074162_4075155_+	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family	NA|145aa|up_5|LR134328.1_4075516_4075951_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|69aa|up_4|LR134328.1_4076001_4076208_-	NA	NA|476aa|up_3|LR134328.1_4076267_4077695_-	PRK12273, aspA, aspartate ammonia-lyase; Provisional	c2c10_CAS-V-U3|359aa|up_2|LR134328.1_4078123_4079200_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|264aa|up_1|LR134328.1_4079357_4080149_-	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|448aa|up_0|LR134328.1_4080170_4081514_-	cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA	NA|266aa|down_0|LR134328.1_4082265_4083063_-	cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes	NA|193aa|down_1|LR134328.1_4083474_4084053_-	COG2032, SodC, Cu/Zn superoxide dismutase [Inorganic ion transport and metabolism]	NA|283aa|down_2|LR134328.1_4084221_4085070_+	cd16443, LplA, lipoate-protein ligase	NA|315aa|down_3|LR134328.1_4085056_4086001_+	PRK05481, PRK05481, lipoyl synthase; Provisional	NA|142aa|down_4|LR134328.1_4087022_4087448_-	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|181aa|down_5|LR134328.1_4087518_4088061_-	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|446aa|down_6|LR134328.1_4088243_4089581_-	TIGR00909, putative_amino_acid_transporter, amino acid transporter	NA|494aa|down_7|LR134328.1_4089718_4091200_-	cd07091, ALDH_F1-2_Ald2-like, ALDH subfamily: ALDH families 1and 2, including 10-formyltetrahydrofolate dehydrogenase, NAD+-dependent retinal dehydrogenase 1 and related proteins	NA|458aa|down_8|LR134328.1_4091768_4093142_-	COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]	NA|413aa|down_9|LR134328.1_4093195_4094434_-	PRK09290, PRK09290, allantoate amidohydrolase; Reviewed
GCA_900636945.1_45532_G01	LR134328	Bacillus freudenreichii strain NCTC4823 genome assembly, chromosome: 1	7	4082055-4082211	7	CRISPRCasFinder	no	c2c10_CAS-V-U3	WYL,RT,csa3,cas3,DinG,DEDDh,cas2,cas1,cas4,cas7,cas8c,cas5,c2c10_CAS-V-U3	Type V-U3	CTGTTAATCAAACGTTTGTTTAA	23	0	0	NA	NA	NA	2	2	TypeV-U3	WYL,RT,csa3,cas3,DinG,DEDDh,cas2,cas1,cas4,cas7,cas8c,cas5,c2c10_CAS-V-U3	NA|69aa|up_4|LR134328.1_4076001_4076208_-,NA	NA|82aa|up_9|LR134328.1_4072590_4072836_-	pfam04502, DUF572, Family of unknown function (DUF572)	NA|168aa|up_8|LR134328.1_4072885_4073389_-	pfam06271, RDD, RDD family	NA|195aa|up_7|LR134328.1_4073415_4074000_-	PRK08317, PRK08317, hypothetical protein; Provisional	NA|331aa|up_6|LR134328.1_4074162_4075155_+	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family	NA|145aa|up_5|LR134328.1_4075516_4075951_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|69aa|up_4|LR134328.1_4076001_4076208_-	NA	NA|476aa|up_3|LR134328.1_4076267_4077695_-	PRK12273, aspA, aspartate ammonia-lyase; Provisional	c2c10_CAS-V-U3|359aa|up_2|LR134328.1_4078123_4079200_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|264aa|up_1|LR134328.1_4079357_4080149_-	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|448aa|up_0|LR134328.1_4080170_4081514_-	cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA	NA|266aa|down_0|LR134328.1_4082265_4083063_-	cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes	NA|193aa|down_1|LR134328.1_4083474_4084053_-	COG2032, SodC, Cu/Zn superoxide dismutase [Inorganic ion transport and metabolism]	NA|283aa|down_2|LR134328.1_4084221_4085070_+	cd16443, LplA, lipoate-protein ligase	NA|315aa|down_3|LR134328.1_4085056_4086001_+	PRK05481, PRK05481, lipoyl synthase; Provisional	NA|142aa|down_4|LR134328.1_4087022_4087448_-	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|181aa|down_5|LR134328.1_4087518_4088061_-	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|446aa|down_6|LR134328.1_4088243_4089581_-	TIGR00909, putative_amino_acid_transporter, amino acid transporter	NA|494aa|down_7|LR134328.1_4089718_4091200_-	cd07091, ALDH_F1-2_Ald2-like, ALDH subfamily: ALDH families 1and 2, including 10-formyltetrahydrofolate dehydrogenase, NAD+-dependent retinal dehydrogenase 1 and related proteins	NA|458aa|down_8|LR134328.1_4091768_4093142_-	COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]	NA|413aa|down_9|LR134328.1_4093195_4094434_-	PRK09290, PRK09290, allantoate amidohydrolase; Reviewed
