The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR134324	Stenotrophomonas maltophilia strain NCTC10259 genome assembly, chromosome: 1	4563878	451877	467213	4563878	tail	Xanthomonas_virus(57.14%)	12	NA	NA
VEF33555.1|451877_460166_-|tail	phage tail fiber protein	tail	I7HDJ4	Xanthomonas_virus	47.8	4.9e-10
VEF33556.1|460156_460552_-	Uncharacterised protein	NA	Q2NPH1	Xanthomonas_virus	47.4	5.2e-27
VEF33557.1|460551_461013_-	phage protein	NA	I7GYA2	Xanthomonas_virus	50.3	1.1e-36
VEF33558.1|461009_461363_-	Uncharacterised protein	NA	I7H418	Xanthomonas_virus	39.0	4.8e-16
VEF33559.1|461359_463675_-|tail	phage tail tape measure protein, lambda family	tail	A0A2R3UAA7	Siphoviridae_environmental_samples	33.2	5.0e-37
VEF33560.1|463769_464012_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEF33561.1|464092_464437_-	Uncharacterised protein	NA	G9FHI3	Rhodococcus_phage	50.0	7.5e-22
VEF33562.1|464436_464895_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEF33563.1|465260_465932_+	dienelactone hydrolase family	NA	NA	NA	NA	NA
VEF33564.1|465928_466351_+	diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases	NA	NA	NA	NA	NA
VEF33565.1|466366_466534_+	transmembrane protein	NA	NA	NA	NA	NA
VEF33566.1|466640_467213_-	Deoxycytidine triphosphate deaminase	NA	S5VM63	Pseudomonas_phage	70.2	4.5e-72
>prophage 2
LR134324	Stenotrophomonas maltophilia strain NCTC10259 genome assembly, chromosome: 1	4563878	2068810	2109866	4563878	tRNA,tail,head	Stenotrophomonas_phage(17.65%)	46	NA	NA
VEF36820.1|2068810_2069323_+|head,tail	Phage gp6-like head-tail connector protein	head,tail	NA	NA	NA	NA
VEF36821.1|2069319_2069670_+|head,tail	phage head-tail adaptor	head,tail	NA	NA	NA	NA
VEF36822.1|2069693_2070050_+	phage protein	NA	NA	NA	NA	NA
VEF36823.1|2070121_2070781_+|tail	tail protein 3	tail	C4ML12	Xanthomonas_virus	56.6	1.2e-63
VEF36824.1|2070780_2071089_+	Domain of uncharacterised function (DUF1789)	NA	NA	NA	NA	NA
VEF36825.1|2071139_2071397_+	phage protein	NA	Q7Y5K1	Xanthomonas_virus	36.4	3.2e-09
VEF36826.1|2071472_2072837_+|tail	Phage tail tape measure protein	tail	K7PM62	Enterobacteria_phage	31.1	1.6e-19
VEF36827.1|2072833_2073163_+|tail	minor tail family protein	tail	C7BGC9	Burkholderia_phage	54.5	9.3e-22
VEF36828.1|2073171_2074332_+	carbohydrate-binding, CenC-like	NA	A0A2P0VPG9	Ralstonia_phage	33.8	1.7e-25
VEF36829.1|2074393_2075545_+|tail	deduced tail fiber protein	tail	Q2PGC1	Xanthomonas_oryzae_phage	37.8	1.1e-29
VEF36830.1|2075576_2076698_+|tail	deduced tail fiber protein	tail	A0A0H4IPB2	Stenotrophomonas_phage	34.0	3.8e-38
VEF36831.1|2076699_2077152_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEF36832.1|2077164_2078304_+|tail	mu-like phage tail fiber protein	tail	A0A0H4IPB2	Stenotrophomonas_phage	32.9	2.4e-32
VEF36833.1|2078346_2079483_+	carbohydrate-binding, CenC-like	NA	A0A0H4IPB2	Stenotrophomonas_phage	50.2	1.3e-75
VEF36834.1|2079486_2079639_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEF36835.1|2079635_2080331_+|tail	phage minor tail protein	tail	A0A2R3UA90	Siphoviridae_environmental_samples	66.7	2.8e-92
VEF36836.1|2080394_2081135_+|tail	phage tail assembly protein	tail	A0A2R3UAR4	Siphoviridae_environmental_samples	58.0	5.8e-80
VEF36837.1|2081127_2081730_+|tail	lambda tail assembly I	tail	W0LI27	Edwardsiella_phage	53.0	1.1e-49
VEF36838.1|2081726_2085215_+|tail	phage tail fiber protein	tail	A0A2R3UA88	Siphoviridae_environmental_samples	58.4	0.0e+00
VEF36839.1|2085214_2085532_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEF36840.1|2085531_2086242_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEF36841.1|2086383_2087151_+	sulfate permease	NA	A0A2H4J153	uncultured_Caudovirales_phage	60.2	7.9e-72
VEF36842.1|2087306_2088182_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VEF36843.1|2088531_2089125_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VEF36844.1|2089150_2091565_+	carboxypeptidase	NA	S5VZH2	Pseudomonas_phage	38.7	5.8e-28
VEF36845.1|2091659_2092691_+|tRNA	tRNA dihydrouridine synthase A	tRNA	NA	NA	NA	NA
VEF36846.1|2092904_2093279_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEF36847.1|2093352_2094036_+	DNA-binding response regulator	NA	NA	NA	NA	NA
VEF36848.1|2094061_2095486_+	two component regulator sensor histidine kinase transmembrane transcriptional regulator	NA	NA	NA	NA	NA
VEF36849.1|2095571_2096363_-	inner membrane protein	NA	NA	NA	NA	NA
VEF36850.1|2096329_2096614_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEF36851.1|2096758_2097727_+	biotin--protein ligase	NA	NA	NA	NA	NA
VEF36852.1|2097723_2098455_+	Pantothenate kinase type III, CoaX-like	NA	NA	NA	NA	NA
VEF36853.1|2098464_2099319_+	sporulation domain-containing protein	NA	NA	NA	NA	NA
VEF36854.1|2099519_2100644_-	hemolysin related protein	NA	NA	NA	NA	NA
VEF36855.1|2100671_2101076_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEF36856.1|2101847_2102150_+	transcriptional regulator	NA	A0A141GEX5	Brucella_phage	38.2	4.1e-08
VEF36857.1|2102322_2102724_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEF36858.1|2103319_2104090_+	Protein of uncharacterised function (DUF3011)	NA	NA	NA	NA	NA
VEF36859.1|2104148_2105093_+	ankyrin repeat-containing protein	NA	NA	NA	NA	NA
VEF36860.1|2105215_2105665_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEF36861.1|2105939_2106860_+	Arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	34.1	5.8e-29
VEF36862.1|2107020_2107158_+	entericidin EcnAB	NA	NA	NA	NA	NA
VEF36863.1|2107360_2107582_+	protein YjbJ	NA	NA	NA	NA	NA
VEF36864.1|2107655_2108462_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEF36865.1|2108570_2109866_+|tRNA	tryptophanyl-tRNA synthetase	tRNA	NA	NA	NA	NA
>prophage 3
LR134324	Stenotrophomonas maltophilia strain NCTC10259 genome assembly, chromosome: 1	4563878	2408371	2414634	4563878		Enterobacteria_phage(50.0%)	6	NA	NA
VEF37132.1|2408371_2409427_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	47.7	5.6e-84
VEF37133.1|2409441_2410323_+	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	58.2	7.6e-95
VEF37134.1|2410319_2410877_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	50.0	1.3e-44
VEF37135.1|2410873_2411767_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	39.3	3.7e-28
VEF37136.1|2411870_2413274_-	mannose-1-phosphate guanylyltransferase	NA	A0A1V0SH58	Hokovirus	28.9	3.8e-48
VEF37137.1|2413287_2414634_-	phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	26.5	1.3e-29
>prophage 4
LR134324	Stenotrophomonas maltophilia strain NCTC10259 genome assembly, chromosome: 1	4563878	2768084	2804370	4563878	protease,tail,capsid,holin,head	Rhizobium_phage(33.33%)	42	NA	NA
VEF37460.1|2768084_2768354_-|holin	Phage holin family 2	holin	NA	NA	NA	NA
VEF37461.1|2768380_2768866_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEF37462.1|2768865_2771670_-|tail	phage tail protein	tail	A0A142EZL1	Stenotrophomonas_phage	40.1	7.2e-38
VEF37463.1|2771695_2774233_-|tail	Phage T7 tail fibre protein	tail	NA	NA	NA	NA
VEF37464.1|2774272_2777437_-	Uncharacterised protein	NA	L7TQZ1	Rhizobium_phage	23.3	2.5e-47
VEF37465.1|2777443_2779618_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEF37466.1|2779621_2780068_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEF37467.1|2780052_2780526_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEF37468.1|2780522_2782655_-	Uncharacterised protein	NA	L7TLW2	Rhizobium_phage	31.5	3.6e-66
VEF37469.1|2782654_2783245_-	Uncharacterised protein	NA	A0A2R2ZGD2	Ralstonia_phage	41.9	1.7e-26
VEF37470.1|2783344_2784298_-	Uncharacterised protein	NA	L7TJ83	Rhizobium_phage	42.7	2.4e-62
VEF37471.1|2784324_2785110_-|capsid	Phage T7 capsid assembly protein	capsid	A0A1B1IVZ8	uncultured_Mediterranean_phage	30.6	1.1e-20
VEF37472.1|2785109_2785253_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEF37473.1|2785269_2786826_-|head,tail	Bacteriophage head to tail connecting protein	head,tail	L7TJ79	Rhizobium_phage	37.6	1.1e-85
VEF37474.1|2786818_2786989_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEF37475.1|2786991_2787171_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEF37476.1|2787235_2787772_-	phage-like protein	NA	A0A2H4J8A1	uncultured_Caudovirales_phage	46.1	1.4e-30
VEF37477.1|2787840_2788149_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEF37478.1|2788174_2788381_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEF37479.1|2788368_2789202_-	DNA polymerase I, thermostable	NA	M1HMA9	Pelagibacter_phage	36.0	2.0e-36
VEF37480.1|2789198_2789348_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEF37481.1|2789344_2789656_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEF37482.1|2789652_2789901_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEF37483.1|2789897_2790086_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEF37484.1|2790051_2790417_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEF37485.1|2790413_2790752_-	Uncharacterised protein	NA	A0A2H4P845	Pseudomonas_phage	53.2	9.6e-22
VEF37486.1|2790733_2792608_-	DNA polymerase I	NA	A0A076YNV1	Mesorhizobium_phage	48.0	5.0e-160
VEF37487.1|2792620_2793271_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEF37488.1|2793281_2793530_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEF37489.1|2793695_2795162_-	DNA primase (bacterial type)	NA	L7TLT7	Rhizobium_phage	56.6	1.9e-151
VEF37490.1|2795313_2795493_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEF37491.1|2795489_2795876_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEF37492.1|2795887_2796250_-	N-acetylmuramoyl-L-alanine amidase	NA	I6Q9Z5	Yersinia_phage	40.6	2.5e-15
VEF37493.1|2796250_2796688_-	Holliday junction resolvase	NA	A0A2I7QZP6	Vibrio_phage	31.1	1.2e-05
VEF37494.1|2796671_2797337_-	Uncharacterised protein	NA	A0A076YJ33	Mesorhizobium_phage	40.9	1.5e-26
VEF37495.1|2797336_2797495_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEF37496.1|2797494_2797779_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEF37497.1|2797771_2797915_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEF37498.1|2797959_2800395_-	DNA-dependent RNA polymerase	NA	L7TQW5	Rhizobium_phage	40.7	1.5e-164
VEF37499.1|2800957_2802253_+	cell division trigger factor	NA	NA	NA	NA	NA
VEF37500.1|2802327_2802954_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.9	5.9e-57
VEF37501.1|2803080_2804370_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	58.0	2.9e-135
>prophage 5
LR134324	Stenotrophomonas maltophilia strain NCTC10259 genome assembly, chromosome: 1	4563878	4013092	4074482	4563878	integrase,transposase	Salmonella_phage(66.67%)	55	4012586:4012600	4077718:4077732
4012586:4012600	attL	CGCCAGCTGGAACAG	NA	NA	NA	NA
VEF38604.1|4013092_4016059_+|transposase	Tn5044 transposase	transposase	A0A1B0V7H9	Salmonella_phage	98.8	0.0e+00
VEF38605.1|4016876_4017542_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEF38606.1|4017784_4018459_+	transcriptional regulator, y4mF family	NA	NA	NA	NA	NA
VEF38607.1|4018773_4019403_-	Predicted protein tyrosine phosphatase	NA	NA	NA	NA	NA
VEF38608.1|4019542_4020322_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEF38609.1|4020501_4020933_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEF38610.1|4021021_4021423_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEF38611.1|4021826_4022768_-	enhanced serine sensitivity protein SseB	NA	NA	NA	NA	NA
VEF38612.1|4022770_4023037_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEF38613.1|4023358_4023622_+	Copper chaperone	NA	NA	NA	NA	NA
VEF38614.1|4023759_4024155_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEF38615.1|4024228_4025533_+	outer membrane efflux protein	NA	NA	NA	NA	NA
VEF38616.1|4025529_4027044_+	cation efflux protein	NA	NA	NA	NA	NA
VEF38617.1|4027040_4030181_+	cation efflux system protein	NA	NA	NA	NA	NA
VEF38618.1|4030285_4031116_-	Nickel uptake substrate-specific transmembrane region	NA	NA	NA	NA	NA
VEF38619.1|4031142_4031583_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEF38620.1|4031736_4032288_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VEF38621.1|4032362_4032638_-	EF hand	NA	NA	NA	NA	NA
VEF38622.1|4032666_4034988_-	copper-transporting p-type ATPase	NA	A0A218MNH6	uncultured_virus	35.2	4.1e-87
VEF38623.1|4035049_4035979_-	transmembrane transporter protein	NA	NA	NA	NA	NA
VEF38624.1|4035989_4036373_-	copper resistance protein	NA	NA	NA	NA	NA
VEF38625.1|4036551_4036902_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEF38626.1|4036972_4037338_-	copper amine oxidase N-terminal protein	NA	NA	NA	NA	NA
VEF38627.1|4037511_4038021_-|transposase	IS3/IS911 family transposase	transposase	NA	NA	NA	NA
VEF38628.1|4038040_4038811_-	cytochrome c family protein	NA	NA	NA	NA	NA
VEF38629.1|4038823_4040092_-	copper resistance protein	NA	NA	NA	NA	NA
VEF38630.1|4040088_4041759_-	copper resistance protein	NA	NA	NA	NA	NA
VEF38631.1|4042253_4042463_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEF38632.1|4042664_4043015_-	transcriptional repressor protein	NA	NA	NA	NA	NA
VEF38633.1|4043026_4043896_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEF38634.1|4043916_4044969_-	transposon cointegrate resolution protein	NA	NA	NA	NA	NA
VEF38635.1|4045243_4046824_+	conjugative transposon DNA recombination protein	NA	NA	NA	NA	NA
VEF38636.1|4046801_4047899_+	Superfamily I DNA and RNA helicases	NA	NA	NA	NA	NA
VEF38637.1|4047914_4048190_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEF38638.1|4048186_4051378_-	Cobalt-zinc-cadmium resistance protein	NA	NA	NA	NA	NA
VEF38639.1|4051386_4052337_-	cobalt-zinc-cadmium resistance protein	NA	NA	NA	NA	NA
VEF38640.1|4052333_4053611_-	cobalt-zinc-cadmium resistance protein	NA	NA	NA	NA	NA
VEF38641.1|4054019_4054637_-	transmembrane protein	NA	NA	NA	NA	NA
VEF38642.1|4054661_4056620_-	transmembrane permease	NA	NA	NA	NA	NA
VEF38643.1|4056710_4057124_+	transcriptional regulator	NA	NA	NA	NA	NA
VEF38644.1|4057120_4058392_+|integrase	phage integrase	integrase	NA	NA	NA	NA
VEF38645.1|4058416_4058854_+|transposase	transposon Tn5044/Tn3926 transposase	transposase	NA	NA	NA	NA
VEF38646.1|4058860_4061410_+|transposase	transposon Tn5044/Tn3926 transposase	transposase	A0A1B0V7H9	Salmonella_phage	27.8	3.3e-74
VEF38647.1|4061826_4062072_+	anaerobic benzoate catabolism transcriptional regulator	NA	NA	NA	NA	NA
VEF38648.1|4063040_4063949_-	transmembrane protein	NA	NA	NA	NA	NA
VEF38649.1|4064046_4064850_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
VEF38650.1|4064809_4065718_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
VEF38651.1|4065925_4066321_+	lactoylglutathione lyase family protein	NA	NA	NA	NA	NA
VEF38652.1|4066498_4067026_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEF38653.1|4067042_4068197_+	NADPH dehydrogenase	NA	NA	NA	NA	NA
VEF38654.1|4069484_4069757_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEF38655.1|4070308_4071337_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEF38656.1|4071571_4072177_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEF38657.1|4072325_4073300_-	cointegrate resolution protein	NA	NA	NA	NA	NA
VEF38658.1|4073405_4074482_+|integrase	integrase	integrase	NA	NA	NA	NA
4077718:4077732	attR	CTGTTCCAGCTGGCG	NA	NA	NA	NA
