assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900636905.1_44982_B01	LR134324	Stenotrophomonas maltophilia strain NCTC10259 genome assembly, chromosome: 1	1	95618-95706	1	CRISPRCasFinder	no		DEDDh,csa3,Cas9_archaeal,DinG,cas3,WYL	Orphan	AGCGTGCCGACCAAGGTCGGCACC	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,Cas9_archaeal,DinG,cas3,WYL	NA,NA	NA|358aa|up_9|LR134324.1_85107_86181_+	pfam14025, DUF4241, Protein of unknown function (DUF4241)	NA|331aa|up_8|LR134324.1_86236_87229_-	cd08473, PBP2_CrgA_like_4, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|196aa|up_7|LR134324.1_87356_87944_+	PRK00170, PRK00170, azoreductase; Reviewed	NA|121aa|up_6|LR134324.1_88080_88443_+	cd11800, SH3_DNMBP_C2_like, Second C-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba, and similar domains	NA|467aa|up_5|LR134324.1_88509_89910_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|213aa|up_4|LR134324.1_90023_90662_+	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal	NA|191aa|up_3|LR134324.1_90781_91354_+	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal	NA|436aa|up_2|LR134324.1_91730_93038_-	PRK14806, PRK14806, bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional	NA|400aa|up_1|LR134324.1_93114_94314_-	COG0077, PheA, Prephenate dehydratase [Amino acid transport and metabolism]	NA|362aa|up_0|LR134324.1_94365_95451_-	PRK05355, PRK05355, 3-phosphoserine/phosphohydroxythreonine transaminase	NA|269aa|down_0|LR134324.1_95735_96542_-	COG1716, COG1716, FOG: FHA domain [Signal transduction mechanisms]	NA|92aa|down_1|LR134324.1_96667_96943_+	pfam09650, PHA_gran_rgn, Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn)	NA|164aa|down_2|LR134324.1_97023_97515_+	pfam05597, Phasin, Poly(hydroxyalcanoate) granule associated protein (phasin)	NA|335aa|down_3|LR134324.1_97751_98756_+	pfam04471, Mrr_cat, Restriction endonuclease	NA|131aa|down_4|LR134324.1_98902_99295_-	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system	NA|305aa|down_5|LR134324.1_99565_100480_-	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|243aa|down_6|LR134324.1_100714_101443_-	TIGR02018, Histidine_utilization_repressor, histidine utilization repressor, proteobacterial	NA|457aa|down_7|LR134324.1_101471_102842_-	PRK09229, PRK09229, N-formimino-L-glutamate deiminase; Validated	NA|408aa|down_8|LR134324.1_102909_104133_+	PRK09356, PRK09356, imidazolonepropionase; Validated	NA|514aa|down_9|LR134324.1_104129_105671_+	PRK09367, PRK09367, histidine ammonia-lyase; Provisional
GCA_900636905.1_44982_B01	LR134324	Stenotrophomonas maltophilia strain NCTC10259 genome assembly, chromosome: 1	2	353382-353476	2	CRISPRCasFinder	no	Cas9_archaeal	DEDDh,csa3,Cas9_archaeal,DinG,cas3,WYL	Type II-A, Type II-B, or Type II-C?	GCCGACCTTGGTCGGCACGCCCA	23	0	0	NA	NA	NA	1	1	TypeII-A,TypeII-B,orTypeII-C?	DEDDh,csa3,Cas9_archaeal,DinG,cas3,WYL	NA|358aa|up_5|LR134324.1_346961_348035_+,NA|58aa|up_3|LR134324.1_350805_350979_-,NA|168aa|up_2|LR134324.1_351119_351623_+,NA|68aa|down_6|LR134324.1_361551_361755_-,NA|236aa|down_9|LR134324.1_363543_364251_+	NA|444aa|up_9|LR134324.1_340858_342190_+	PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed	NA|299aa|up_8|LR134324.1_342840_343737_-	cd07331, M48C_Oma1_like, Peptidase M48C, integral membrane endopeptidase	NA|629aa|up_7|LR134324.1_343821_345708_-	pfam03781, FGE-sulfatase, Sulfatase-modifying factor enzyme 1	NA|360aa|up_6|LR134324.1_345792_346872_+	TIGR01388, Ribonuclease_D, ribonuclease D	NA|358aa|up_5|LR134324.1_346961_348035_+	NA	NA|777aa|up_4|LR134324.1_348106_350437_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|58aa|up_3|LR134324.1_350805_350979_-	NA	NA|168aa|up_2|LR134324.1_351119_351623_+	NA	NA|254aa|up_1|LR134324.1_351629_352391_-	PRK07478, PRK07478, short chain dehydrogenase; Provisional	NA|281aa|up_0|LR134324.1_352523_353366_+	PRK15435, PRK15435, bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada	NA|342aa|down_0|LR134324.1_353484_354510_-	cd05288, PGDH, Prostaglandin dehydrogenases	NA|184aa|down_1|LR134324.1_355210_355762_+	pfam08212, Lipocalin_2, Lipocalin-like domain	NA|159aa|down_2|LR134324.1_355927_356404_+	pfam03168, LEA_2, Late embryogenesis abundant protein	NA|597aa|down_3|LR134324.1_356468_358259_+	PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provisional	Cas9_archaeal|222aa|down_4|LR134324.1_358733_359399_+	COG1403, McrA, Restriction endonuclease [Defense mechanisms]	NA|637aa|down_5|LR134324.1_359501_361412_+	PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional	NA|68aa|down_6|LR134324.1_361551_361755_-	NA	NA|188aa|down_7|LR134324.1_361929_362493_-	pfam11218, DUF3011, Protein of unknown function (DUF3011)	NA|224aa|down_8|LR134324.1_362621_363293_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|236aa|down_9|LR134324.1_363543_364251_+	NA
GCA_900636905.1_44982_B01	LR134324	Stenotrophomonas maltophilia strain NCTC10259 genome assembly, chromosome: 1	3	1488965-1489067	3	CRISPRCasFinder	no		DEDDh,csa3,Cas9_archaeal,DinG,cas3,WYL	Orphan	TGCGTGTGCCAACCAAGGTTGGCA	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,Cas9_archaeal,DinG,cas3,WYL	NA|186aa|up_9|LR134324.1_1480564_1481122_-,NA|124aa|up_8|LR134324.1_1481206_1481578_-,NA|147aa|up_7|LR134324.1_1481640_1482081_-,NA|113aa|up_6|LR134324.1_1482123_1482462_-,NA|114aa|up_4|LR134324.1_1483160_1483502_-,NA|130aa|up_1|LR134324.1_1485784_1486174_-,NA|137aa|down_4|LR134324.1_1492721_1493132_-,NA|193aa|down_6|LR134324.1_1495147_1495726_+	NA|186aa|up_9|LR134324.1_1480564_1481122_-	NA	NA|124aa|up_8|LR134324.1_1481206_1481578_-	NA	NA|147aa|up_7|LR134324.1_1481640_1482081_-	NA	NA|113aa|up_6|LR134324.1_1482123_1482462_-	NA	NA|133aa|up_5|LR134324.1_1482572_1482971_-	pfam15588, Imm10, Immunity protein 10	NA|114aa|up_4|LR134324.1_1483160_1483502_-	NA	NA|502aa|up_3|LR134324.1_1483725_1485231_+	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]	NA|129aa|up_2|LR134324.1_1485256_1485643_-	cd04685, Nudix_Hydrolase_26, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|130aa|up_1|LR134324.1_1485784_1486174_-	NA	NA|773aa|up_0|LR134324.1_1486351_1488670_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|278aa|down_0|LR134324.1_1489092_1489926_-	PRK10513, PRK10513, sugar phosphate phosphatase; Provisional	NA|221aa|down_1|LR134324.1_1490075_1490738_+	pfam06055, ExoD, Exopolysaccharide synthesis, ExoD	NA|437aa|down_2|LR134324.1_1490869_1492180_-	COG2133, COG2133, Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]	NA|147aa|down_3|LR134324.1_1492172_1492613_-	COG4244, COG4244, Predicted membrane protein [Function unknown]	NA|137aa|down_4|LR134324.1_1492721_1493132_-	NA	NA|589aa|down_5|LR134324.1_1493381_1495148_+	cd04059, Peptidases_S8_Protein_convertases_Kexins_Furin-like, Peptidase S8 family domain in Protein convertases	NA|193aa|down_6|LR134324.1_1495147_1495726_+	NA	NA|227aa|down_7|LR134324.1_1495887_1496568_-	cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold	NA|111aa|down_8|LR134324.1_1496579_1496912_-	TIGR02847, Cytochrome_bo3_ubiquinol_oxidase_subunit_4, cytochrome o ubiquinol oxidase subunit IV	NA|212aa|down_9|LR134324.1_1496913_1497549_-	TIGR02842, Cytochrome_bo3_ubiquinol_oxidase_subunit_3, cytochrome o ubiquinol oxidase, subunit III
GCA_900636905.1_44982_B01	LR134324	Stenotrophomonas maltophilia strain NCTC10259 genome assembly, chromosome: 1	4	1946175-1946288	4	CRISPRCasFinder	no		DEDDh,csa3,Cas9_archaeal,DinG,cas3,WYL	Orphan	TGGTGGGTGCCGACCGTTGGTCGGCAC	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,Cas9_archaeal,DinG,cas3,WYL	NA,NA|126aa|down_0|LR134324.1_1947500_1947878_+,NA|105aa|down_3|LR134324.1_1950894_1951209_+,NA|296aa|down_9|LR134324.1_1957575_1958463_-	NA|273aa|up_9|LR134324.1_1935392_1936211_+	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|345aa|up_8|LR134324.1_1936218_1937253_+	COG0429, COG0429, Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]	NA|690aa|up_7|LR134324.1_1937309_1939379_+	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|204aa|up_6|LR134324.1_1939389_1940001_+	cd00865, PEBP_bact_arch, PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea	NA|178aa|up_5|LR134324.1_1940102_1940636_-	COG0431, COG0431, Predicted flavoprotein [General function prediction only]	NA|276aa|up_4|LR134324.1_1940715_1941543_-	pfam14302, DUF4377, Domain of unknown function (DUF4377)	NA|265aa|up_3|LR134324.1_1941616_1942411_-	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase	NA|470aa|up_2|LR134324.1_1942633_1944043_+	PRK09469, glnA, glutamate--ammonia ligase	NA|113aa|up_1|LR134324.1_1944364_1944703_+	COG0347, GlnK, Nitrogen regulatory protein PII [Amino acid transport and metabolism]	NA|477aa|up_0|LR134324.1_1944725_1946156_+	PRK10666, PRK10666, ammonium transporter AmtB	NA|126aa|down_0|LR134324.1_1947500_1947878_+	NA	NA|274aa|down_1|LR134324.1_1948730_1949552_+	COG3023, ampD, N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]	NA|389aa|down_2|LR134324.1_1949619_1950786_+	COG2821, MltA, Membrane-bound lytic murein transglycosylase [Cell envelope biogenesis, outer membrane]	NA|105aa|down_3|LR134324.1_1950894_1951209_+	NA	NA|682aa|down_4|LR134324.1_1951312_1953358_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|354aa|down_5|LR134324.1_1953473_1954535_+	COG3852, NtrB, Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]	NA|483aa|down_6|LR134324.1_1954527_1955976_+	TIGR01818, Nitrogen_assimilation_regulatory_protein, nitrogen regulation protein NR(I)	NA|190aa|down_7|LR134324.1_1956069_1956639_+	pfam00080, Sod_Cu, Copper/zinc superoxide dismutase (SODC)	NA|209aa|down_8|LR134324.1_1956671_1957298_+	pfam00080, Sod_Cu, Copper/zinc superoxide dismutase (SODC)	NA|296aa|down_9|LR134324.1_1957575_1958463_-	NA
GCA_900636905.1_44982_B01	LR134324	Stenotrophomonas maltophilia strain NCTC10259 genome assembly, chromosome: 1	5	2631477-2631589	5	CRISPRCasFinder	no		DEDDh,csa3,Cas9_archaeal,DinG,cas3,WYL	Orphan	ATCCGCGCGTGGTGGTTGCATCTGGTAGGCGCGG	34	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,Cas9_archaeal,DinG,cas3,WYL	NA,NA|140aa|down_0|LR134324.1_2631663_2632083_-	NA|185aa|up_9|LR134324.1_2622190_2622745_-	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate	NA|312aa|up_8|LR134324.1_2622741_2623677_-	PRK05755, PRK05755, DNA polymerase I; Provisional	NA|200aa|up_7|LR134324.1_2623673_2624273_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|774aa|up_6|LR134324.1_2624586_2626908_+	pfam07793, DUF1631, Protein of unknown function (DUF1631)	NA|360aa|up_5|LR134324.1_2626960_2628040_+	cd05304, Rubrum_tdh, Rubrum transdehydrogenase NAD-binding and catalytic domains	NA|151aa|up_4|LR134324.1_2628160_2628613_-	pfam11304, DUF3106, Protein of unknown function (DUF3106)	NA|110aa|up_3|LR134324.1_2628616_2628946_-	pfam11859, DUF3379, Protein of unknown function (DUF3379)	NA|195aa|up_2|LR134324.1_2628942_2629527_-	PRK09047, PRK09047, RNA polymerase factor sigma-70; Validated	NA|107aa|up_1|LR134324.1_2629625_2629946_+	pfam12769, PNTB_4TM, 4TM region of pyridine nucleotide transhydrogenase, mitoch	NA|487aa|up_0|LR134324.1_2629942_2631403_+	pfam02233, PNTB, NAD(P) transhydrogenase beta subunit	NA|140aa|down_0|LR134324.1_2631663_2632083_-	NA	NA|166aa|down_1|LR134324.1_2632259_2632757_+	TIGR03406, FeS_long_SufT, probable FeS assembly SUF system protein SufT	NA|365aa|down_2|LR134324.1_2632816_2633911_+	PRK13357, PRK13357, branched-chain amino acid aminotransferase; Provisional	NA|581aa|down_3|LR134324.1_2634380_2636123_+	cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13	NA|165aa|down_4|LR134324.1_2636211_2636706_-	COG0252, AnsB, L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|112aa|down_5|LR134324.1_2636776_2637112_-	pfam09842, DUF2069, Predicted membrane protein (DUF2069)	NA|198aa|down_6|LR134324.1_2637108_2637702_-	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|425aa|down_7|LR134324.1_2637779_2639054_+	PRK04214, rbn, ribonuclease BN/unknown domain fusion protein; Reviewed	NA|192aa|down_8|LR134324.1_2639050_2639626_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|261aa|down_9|LR134324.1_2640124_2640907_-	TIGR03707, PPK2_P_aer, polyphosphate kinase 2, PA0141 family
GCA_900636905.1_44982_B01	LR134324	Stenotrophomonas maltophilia strain NCTC10259 genome assembly, chromosome: 1	6	3502092-3502185	6	CRISPRCasFinder	no		DEDDh,csa3,Cas9_archaeal,DinG,cas3,WYL	Orphan	GTGCCAACCAAGGTTGGCACCTACCG	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,Cas9_archaeal,DinG,cas3,WYL	NA|169aa|up_5|LR134324.1_3497327_3497834_-,NA	NA|234aa|up_9|LR134324.1_3492076_3492778_-	cd02910, cupin_Yhhw_N, Escherichia coli YhhW and YhaK and related proteins, pirin-like bicupin, N-terminal cupin domain	NA|307aa|up_8|LR134324.1_3492918_3493839_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|270aa|up_7|LR134324.1_3495728_3496538_-	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed	NA|223aa|up_6|LR134324.1_3496646_3497315_-	pfam06912, DUF1275, Protein of unknown function (DUF1275)	NA|169aa|up_5|LR134324.1_3497327_3497834_-	NA	NA|467aa|up_4|LR134324.1_3497830_3499231_-	COG1875, COG1875, NYN ribonuclease and ATPase of PhoH family domains [General    function prediction only]	NA|160aa|up_3|LR134324.1_3499315_3499795_-	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|187aa|up_2|LR134324.1_3499886_3500447_-	COG2716, GcvR, Glycine cleavage system regulatory protein [Amino acid transport and metabolism]	NA|298aa|up_1|LR134324.1_3500610_3501504_+	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional	NA|172aa|up_0|LR134324.1_3501536_3502052_+	COG3317, NlpB, Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane]	NA|108aa|down_0|LR134324.1_3502239_3502563_-	pfam11953, DUF3470, Domain of unknown function (DUF3470)	NA|475aa|down_1|LR134324.1_3502743_3504168_+	cd17359, MFS_XylE_like, D-xylose-proton symporter and similar transporters of the Major Facilitator Superfamily	NA|462aa|down_2|LR134324.1_3504814_3506200_+	PRK11623, pcnB, poly(A) polymerase I; Provisional	NA|162aa|down_3|LR134324.1_3506203_3506689_+	COG0801, FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]	NA|272aa|down_4|LR134324.1_3506723_3507539_+	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed	NA|280aa|down_5|LR134324.1_3507535_3508375_+	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed	NA|127aa|down_6|LR134324.1_3508536_3508917_+	PRK05449, PRK05449, aspartate alpha-decarboxylase; Provisional	NA|505aa|down_7|LR134324.1_3508913_3510428_+	PRK00179, pgi, glucose-6-phosphate isomerase; Reviewed	NA|190aa|down_8|LR134324.1_3510552_3511122_-	COG4567, COG4567, Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]	NA|409aa|down_9|LR134324.1_3511118_3512345_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]
