assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900636825.1_44858_E01	LR134318	Pseudomonas fluorescens strain NCTC9428 genome assembly, chromosome: 1	1	193872-193994	1	CRISPRCasFinder	no		PD-DExK,DEDDh,csa3,DinG,cas3,RT	Orphan	AGCTGCCGAAGGCTGCGATCTTTTGATCTTGTTTTTCAAGAATCA	45	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,DEDDh,csa3,DinG,cas3,RT	NA|212aa|up_5|LR134318.1_184853_185489_+,NA|69aa|down_2|LR134318.1_196373_196580_+	NA|664aa|up_9|LR134318.1_180240_182232_+	pfam04632, FUSC, Fusaric acid resistance protein family	NA|70aa|up_8|LR134318.1_182228_182438_+	pfam07869, DUF1656, Protein of unknown function (DUF1656)	NA|296aa|up_7|LR134318.1_182434_183322_+	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]	NA|481aa|up_6|LR134318.1_183318_184761_+	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family	NA|212aa|up_5|LR134318.1_184853_185489_+	NA	NA|502aa|up_4|LR134318.1_185737_187243_+	pfam06097, DUF945, Bacterial protein of unknown function (DUF945)	NA|827aa|up_3|LR134318.1_187479_189960_+	PRK10049, pgaA, outer membrane protein PgaA; Provisional	NA|666aa|up_2|LR134318.1_189972_191970_+	PRK14582, pgaB, poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB	NA|452aa|up_1|LR134318.1_191971_193327_+	PRK11204, PRK11204, N-glycosyltransferase; Provisional	NA|176aa|up_0|LR134318.1_193323_193851_+	pfam13994, PgaD, PgaD-like protein	NA|508aa|down_0|LR134318.1_194042_195566_-	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase	NA|213aa|down_1|LR134318.1_195627_196266_+	cd00865, PEBP_bact_arch, PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea	NA|69aa|down_2|LR134318.1_196373_196580_+	NA	NA|481aa|down_3|LR134318.1_197166_198609_+	PRK11241, gabD, NADP-dependent succinate-semialdehyde dehydrogenase I	NA|426aa|down_4|LR134318.1_198795_200073_+	PRK08088, PRK08088, 4-aminobutyrate--2-oxoglutarate transaminase	NA|404aa|down_5|LR134318.1_200210_201422_+	pfam08668, HDOD, HDOD domain	NA|330aa|down_6|LR134318.1_201556_202546_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|394aa|down_7|LR134318.1_202774_203956_-	COG1398, OLE1, Fatty-acid desaturase [Lipid metabolism]	NA|640aa|down_8|LR134318.1_204102_206022_+	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase	NA|61aa|down_9|LR134318.1_206260_206443_+	COG5583, COG5583, Uncharacterized small protein [Function unknown]
GCA_900636825.1_44858_E01	LR134318	Pseudomonas fluorescens strain NCTC9428 genome assembly, chromosome: 1	2	1348018-1348112	2	CRISPRCasFinder	no		PD-DExK,DEDDh,csa3,DinG,cas3,RT	Orphan	AAAAACCCTCACTATAAGGGGAAC	24	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,DEDDh,csa3,DinG,cas3,RT	NA|92aa|up_2|LR134318.1_1345230_1345506_-,NA|111aa|up_0|LR134318.1_1347087_1347420_+,NA|94aa|down_0|LR134318.1_1348621_1348903_+,NA|129aa|down_1|LR134318.1_1349079_1349466_+,NA|337aa|down_2|LR134318.1_1349507_1350518_+,NA|203aa|down_3|LR134318.1_1350681_1351290_+,NA|75aa|down_4|LR134318.1_1351334_1351559_+,NA|35aa|down_5|LR134318.1_1351567_1351672_+,NA|65aa|down_7|LR134318.1_1353191_1353386_+	NA|71aa|up_9|LR134318.1_1340509_1340722_+	COG5004, COG5004, P2-like prophage tail protein X [General function prediction only]	NA|344aa|up_8|LR134318.1_1340731_1341763_+	PHA02561, D, tail protein; Provisional	NA|189aa|up_7|LR134318.1_1341937_1342504_+	COG3179, COG3179, Predicted chitinase [General function prediction only]	NA|173aa|up_6|LR134318.1_1342482_1343001_+	pfam03245, Phage_lysis, Bacteriophage Rz lysis protein	NA|167aa|up_5|LR134318.1_1343068_1343569_+	pfam02464, CinA, Competence-damaged protein	NA|352aa|up_4|LR134318.1_1343652_1344708_+	PRK09354, recA, recombinase A; Provisional	NA|157aa|up_3|LR134318.1_1344716_1345187_+	PRK00117, recX, recombination regulator RecX; Reviewed	NA|92aa|up_2|LR134318.1_1345230_1345506_-	NA	NA|439aa|up_1|LR134318.1_1345774_1347091_+	cd01184, INT_C_like_1, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain	NA|111aa|up_0|LR134318.1_1347087_1347420_+	NA	NA|94aa|down_0|LR134318.1_1348621_1348903_+	NA	NA|129aa|down_1|LR134318.1_1349079_1349466_+	NA	NA|337aa|down_2|LR134318.1_1349507_1350518_+	NA	NA|203aa|down_3|LR134318.1_1350681_1351290_+	NA	NA|75aa|down_4|LR134318.1_1351334_1351559_+	NA	NA|35aa|down_5|LR134318.1_1351567_1351672_+	NA	NA|324aa|down_6|LR134318.1_1351870_1352842_-	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|65aa|down_7|LR134318.1_1353191_1353386_+	NA	NA|142aa|down_8|LR134318.1_1353386_1353812_-	pfam13652, QSregVF, Putative quorum-sensing-regulated virulence factor	NA|249aa|down_9|LR134318.1_1354001_1354748_+	COG3148, COG3148, Uncharacterized conserved protein [Function unknown]
GCA_900636825.1_44858_E01	LR134318	Pseudomonas fluorescens strain NCTC9428 genome assembly, chromosome: 1	3	2352280-2352397	3	CRISPRCasFinder	no		PD-DExK,DEDDh,csa3,DinG,cas3,RT	Orphan	TGTAGGAGCTGCCGAAGGCTGCGATCTTTTGA	32	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,DEDDh,csa3,DinG,cas3,RT	NA,NA|721aa|down_0|LR134318.1_2352645_2354808_-	NA|333aa|up_9|LR134318.1_2337453_2338452_-	PRK13361, PRK13361, GTP 3',8-cyclase MoaA	NA|284aa|up_8|LR134318.1_2340011_2340863_-	COG2340, COG2340, Uncharacterized protein with SCP/PR1 domains [Function unknown]	NA|207aa|up_7|LR134318.1_2341063_2341684_+	pfam07486, Hydrolase_2, Cell Wall Hydrolase	NA|296aa|up_6|LR134318.1_2341680_2342568_-	cd08460, PBP2_DntR_like_1, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold	NA|471aa|up_5|LR134318.1_2342639_2344052_+	cd17321, MFS_MMR_MDR_like, Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|238aa|up_4|LR134318.1_2344172_2344886_-	pfam13645, YkuD_2, L,D-transpeptidase catalytic domain	NA|539aa|up_3|LR134318.1_2345036_2346653_+	COG2989, COG2989, Uncharacterized protein conserved in bacteria [Function unknown]	NA|875aa|up_2|LR134318.1_2347225_2349850_-	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated	NA|157aa|up_1|LR134318.1_2350302_2350773_+	COG3313, COG3313, Predicted Fe-S protein [General function prediction only]	NA|259aa|up_0|LR134318.1_2350730_2351507_-	PRK11175, PRK11175, universal stress protein UspE; Provisional	NA|721aa|down_0|LR134318.1_2352645_2354808_-	NA	NA|425aa|down_1|LR134318.1_2354999_2356274_-	PRK08318, PRK08318, NAD-dependent dihydropyrimidine dehydrogenase subunit PreA	NA|456aa|down_2|LR134318.1_2356274_2357642_-	PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional	NA|480aa|down_3|LR134318.1_2357831_2359271_-	PRK08323, PRK08323, phenylhydantoinase; Validated	NA|495aa|down_4|LR134318.1_2359907_2361392_+	cd11485, SLC-NCS1sbd_YbbW-like, uncharacterized nucleobase-cation-symport-1 (NCS1) transporter subfamily, YbbW-like; solute-binding domain	NA|428aa|down_5|LR134318.1_2361551_2362835_+	PRK12893, PRK12893, Zn-dependent hydrolase	NA|463aa|down_6|LR134318.1_2363588_2364977_-	PRK12393, PRK12393, amidohydrolase; Provisional	NA|456aa|down_7|LR134318.1_2364990_2366358_-	TIGR03173, pbuX, xanthine permease	NA|348aa|down_8|LR134318.1_2366607_2367651_-	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]	NA|195aa|down_9|LR134318.1_2367770_2368355_-	COG0163, UbiX family flavin prenyltransferase [Coenzyme transport and metabolism]
GCA_900636825.1_44858_E01	LR134318	Pseudomonas fluorescens strain NCTC9428 genome assembly, chromosome: 1	4	3578144-3578291	4	CRISPRCasFinder	no	DEDDh	PD-DExK,DEDDh,csa3,DinG,cas3,RT	Unclear	CTCGGTATCGCATGTCGGTGCAATTCGCCGAAACACCGCAATCAGT	46	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,DEDDh,csa3,DinG,cas3,RT	NA|77aa|up_8|LR134318.1_3569056_3569287_+,NA	NA|186aa|up_9|LR134318.1_3568315_3568873_-	COG0431, COG0431, Predicted flavoprotein [General function prediction only]	NA|77aa|up_8|LR134318.1_3569056_3569287_+	NA	NA|298aa|up_7|LR134318.1_3569372_3570266_+	cd08415, PBP2_LysR_opines_like, The C-terminal substrate-domain of LysR-type transcriptional regulators involved in the catabolism of opines and that of related regulators, contains the type 2 periplasmic binding fold	NA|205aa|up_6|LR134318.1_3570231_3570846_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|752aa|up_5|LR134318.1_3570860_3573116_-	PRK15399, PRK15399, lysine decarboxylase	DEDDh|253aa|up_4|LR134318.1_3573306_3574065_-	PRK05711, PRK05711, DNA polymerase III subunit epsilon; Provisional	NA|157aa|up_3|LR134318.1_3574278_3574749_-	PRK00203, rnhA, ribonuclease H; Reviewed	NA|253aa|up_2|LR134318.1_3574842_3575601_-	pfam08241, Methyltransf_11, Methyltransferase domain	NA|256aa|up_1|LR134318.1_3575667_3576435_+	TIGR03413, GSH_gloB, hydroxyacylglutathione hydrolase	NA|488aa|up_0|LR134318.1_3576534_3577998_+	PRK10783, mltD, membrane-bound lytic murein transglycosylase D; Provisional	NA|382aa|down_0|LR134318.1_3578402_3579548_+	pfam00665, rve, Integrase core domain	NA|611aa|down_1|LR134318.1_3579716_3581549_+	cd08497, PBP2_NikA_DppA_OppA_like_14, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|614aa|down_2|LR134318.1_3581545_3583387_+	cd08497, PBP2_NikA_DppA_OppA_like_14, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|358aa|down_3|LR134318.1_3583391_3584465_+	COG4174, COG4174, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|340aa|down_4|LR134318.1_3584466_3585486_+	COG4239, COG4239, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|537aa|down_5|LR134318.1_3585487_3587098_+	COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]	NA|265aa|down_6|LR134318.1_3587117_3587912_+	COG0623, FabI, Enoyl-[acyl-carrier-protein]	NA|322aa|down_7|LR134318.1_3588066_3589032_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|402aa|down_8|LR134318.1_3589213_3590419_-	TIGR02608, hypothetical_protein, delta-60 repeat domain	NA|277aa|down_9|LR134318.1_3590897_3591728_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
GCA_900636825.1_44858_E01	LR134318	Pseudomonas fluorescens strain NCTC9428 genome assembly, chromosome: 1	5	4631107-4631201	5	CRISPRCasFinder	no	DEDDh	PD-DExK,DEDDh,csa3,DinG,cas3,RT	Unclear	CCAGCTCCCACAGGTTTCGAGTTGT	25	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,DEDDh,csa3,DinG,cas3,RT	NA,NA	NA|157aa|up_9|LR134318.1_4621413_4621884_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|201aa|up_8|LR134318.1_4622198_4622801_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|69aa|up_7|LR134318.1_4622875_4623082_-	PRK00295, PRK00295, hypothetical protein; Provisional	NA|142aa|up_6|LR134318.1_4623085_4623511_-	pfam01230, HIT, HIT domain	NA|450aa|up_5|LR134318.1_4624399_4625749_+	pfam03573, OprD, outer membrane porin, OprD family	NA|281aa|up_4|LR134318.1_4625868_4626711_-	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS	NA|162aa|up_3|LR134318.1_4626864_4627350_-	PRK05412, PRK05412, putative nucleotide-binding protein; Reviewed	NA|306aa|up_2|LR134318.1_4627490_4628408_+	PRK05708, PRK05708, putative 2-dehydropantoate 2-reductase	NA|679aa|up_1|LR134318.1_4628453_4630490_+	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS	NA|195aa|up_0|LR134318.1_4630493_4631078_+	pfam01923, Cob_adeno_trans, Cobalamin adenosyltransferase	NA|316aa|down_0|LR134318.1_4631268_4632216_-	PRK08999, PRK08999, Nudix family hydrolase	NA|211aa|down_1|LR134318.1_4632212_4632845_-	cd03194, GST_C_3, C-terminal, alpha helical domain of an unknown subfamily 3 of Glutathione S-transferases	NA|406aa|down_2|LR134318.1_4633024_4634242_-	PRK05388, argJ, bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA|912aa|down_3|LR134318.1_4634362_4637098_-	PRK13103, secA, preprotein translocase subunit SecA; Reviewed	NA|152aa|down_4|LR134318.1_4637405_4637861_+	pfam05258, DUF721, Protein of unknown function (DUF721)	NA|496aa|down_5|LR134318.1_4637950_4639438_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|630aa|down_6|LR134318.1_4639624_4641514_+	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]	NA|371aa|down_7|LR134318.1_4641785_4642898_+	cd03814, GT4-like, glycosyltransferase family 4 proteins	NA|257aa|down_8|LR134318.1_4642890_4643661_+	cd11374, CE4_u10, Putative catalytic domain of uncharacterized bacterial proteins from the carbohydrate esterase 4 superfamily	NA|332aa|down_9|LR134318.1_4643657_4644653_+	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region
GCA_900636825.1_44858_E01	LR134318	Pseudomonas fluorescens strain NCTC9428 genome assembly, chromosome: 1	6	4694592-4694695	6	CRISPRCasFinder	no		PD-DExK,DEDDh,csa3,DinG,cas3,RT	Orphan	TGTAGGAGCTGCCGCAGGCTGCGATCTTTTGATCTTGA	38	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,DEDDh,csa3,DinG,cas3,RT	NA,NA|81aa|down_1|LR134318.1_4695441_4695684_-,NA|59aa|down_8|LR134318.1_4702196_4702373_+	NA|250aa|up_9|LR134318.1_4674534_4675284_-	PRK06688, PRK06688, enoyl-CoA hydratase; Provisional	NA|312aa|up_8|LR134318.1_4675458_4676394_-	PRK05713, PRK05713, iron-sulfur-binding ferredoxin reductase	NA|369aa|up_7|LR134318.1_4676386_4677493_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|508aa|up_6|LR134318.1_4677939_4679463_+	COG1951, TtdA, Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain [Energy production and conversion]	NA|1503aa|up_5|LR134318.1_4679670_4684179_+	pfam03534, SpvB, Salmonella virulence plasmid 65kDa B protein	NA|855aa|up_4|LR134318.1_4684303_4686868_+	TIGR03696, tRNA_nuclease_WapA, RHS repeat-associated core domain	NA|587aa|up_3|LR134318.1_4686946_4688707_+	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]	NA|443aa|up_2|LR134318.1_4688706_4690035_+	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|972aa|up_1|LR134318.1_4690140_4693056_+	TIGR03696, tRNA_nuclease_WapA, RHS repeat-associated core domain	NA|440aa|up_0|LR134318.1_4693261_4694581_+	cd17367, MFS_KgtP, Alpha-ketoglutarate permease of the Major Facilitator Superfamily of transporters	NA|210aa|down_0|LR134318.1_4694807_4695437_+	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]	NA|81aa|down_1|LR134318.1_4695441_4695684_-	NA	NA|118aa|down_2|LR134318.1_4695728_4696082_-	pfam03992, ABM, Antibiotic biosynthesis monooxygenase	NA|310aa|down_3|LR134318.1_4696478_4697408_+	pfam06719, AraC_N, AraC-type transcriptional regulator N-terminus	NA|484aa|down_4|LR134318.1_4697556_4699008_-	cd07110, ALDH_F10_BADH, Arabidopsis betaine aldehyde dehydrogenase 1 and 2, ALDH family 10A8 and 10A9-like	NA|546aa|down_5|LR134318.1_4699004_4700642_-	PRK07524, PRK07524, 5-guanidino-2-oxopentanoate decarboxylase	NA|294aa|down_6|LR134318.1_4700859_4701741_+	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|74aa|down_7|LR134318.1_4701858_4702080_-	COG2910, COG2910, Putative NADH-flavin reductase [General function prediction only]	NA|59aa|down_8|LR134318.1_4702196_4702373_+	NA	NA|297aa|down_9|LR134318.1_4702482_4703373_-	cd06999, cupin_HpaA-like_N, AraC/XylS family transcriptional regulators similar to HpaA, N-terminal cupin domain
