The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR134311	Escherichia coli strain NCTC9113 genome assembly, chromosome: 1	4853909	812632	858031	4853909	transposase	Stx2-converting_phage(37.5%)	42	NA	NA
VEE94318.1|812632_812917_+|transposase	putative transposase (partial)	transposase	Q6H9S5	Enterobacteria_phage	62.2	1.5e-23
VEE94320.1|813132_814389_-	PTS system EIIC component	NA	NA	NA	NA	NA
VEE94322.1|814401_814689_-	PTS system transporter subunit IIB	NA	NA	NA	NA	NA
VEE94324.1|814704_815148_-	PTS system EIIA component	NA	NA	NA	NA	NA
VEE94326.1|815418_816450_+	transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	27.0	8.0e-19
VEE94328.1|817289_818519_-	putative beta-ketoacyl synthase	NA	NA	NA	NA	NA
VEE94330.1|818515_819247_-	putative short chain dehydrogenase	NA	NA	NA	NA	NA
VEE94332.1|819246_819711_-	putative dehydratase	NA	NA	NA	NA	NA
VEE94334.1|819707_820877_-	3-oxoacyl-ACP synthase	NA	NA	NA	NA	NA
VEE94336.1|820878_821463_-	putative lipoprotein	NA	NA	NA	NA	NA
VEE94338.1|821459_823778_-	putative transporter	NA	NA	NA	NA	NA
VEE94340.1|823746_824352_-	outer membrane lipoprotein carrier protein LolA family	NA	NA	NA	NA	NA
VEE94342.1|824348_824771_-	putative thioesterase	NA	NA	NA	NA	NA
VEE94344.1|824774_826451_-	putative glycosyl transferase	NA	NA	NA	NA	NA
VEE94346.1|826441_826795_-	putative acyl carrier protein dehydratase	NA	NA	NA	NA	NA
VEE94348.1|826781_828140_-	putative AMP-binding protein	NA	NA	NA	NA	NA
VEE94349.1|828136_828718_-	DNA gyrase subunit B	NA	NA	NA	NA	NA
VEE94351.1|828722_828974_-	putative acyl carrier protein	NA	NA	NA	NA	NA
VEE94353.1|828985_829243_-	putative acyl carrier protein	NA	NA	NA	NA	NA
VEE94355.1|829217_830057_-	phospholipid biosynthesis acyltransferase	NA	NA	NA	NA	NA
VEE94360.1|830035_830758_-	beta-ketoacyl synthase domain-containing protein	NA	NA	NA	NA	NA
VEE94362.1|830798_831857_-	putative methyltransferase	NA	NA	NA	NA	NA
VEE94364.1|831921_832311_-	putative lipoprotein	NA	NA	NA	NA	NA
VEE94366.1|832991_834599_+	putative hemolysin activator ShlB-type	NA	A0A0R6PI85	Moraxella_phage	25.5	3.2e-22
VEE94368.1|834611_844040_+	hemagglutinin-related protein	NA	A0A0R6PJK4	Moraxella_phage	33.8	1.9e-29
VEE94370.1|844039_844285_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE94372.1|844420_845203_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE94374.1|845254_845632_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE94376.1|845787_846330_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE94378.1|846776_847262_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE94380.1|847769_848165_+	hemagglutinin-related protein	NA	NA	NA	NA	NA
VEE94382.1|848161_848419_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE94384.1|848859_849129_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE94386.1|849184_850441_+	C-terminal part of hemagglutinin-related protein	NA	NA	NA	NA	NA
VEE94388.1|850427_850730_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE94390.1|850730_850922_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE94392.1|851635_853930_+	Uncharacterized conserved protein	NA	NA	NA	NA	NA
VEE94394.1|854010_854421_+|transposase	putative transposase	transposase	NA	NA	NA	NA
VEE94396.1|854648_856058_-|transposase	transposase-like protein	transposase	A0A0P0ZBS5	Stx2-converting_phage	58.8	3.3e-156
VEE94398.1|856220_856568_-|transposase	transposase Orf2 of IS683	transposase	A0A0P0ZDM8	Stx2-converting_phage	72.9	9.2e-44
VEE94400.1|856564_857239_-|transposase	transposase Orf1 of IS683	transposase	A0A0P0ZCV4	Stx2-converting_phage	30.8	3.6e-12
VEE94402.1|857689_858031_+|transposase	ISSd1, transposase OrfB	transposase	A0A0P0I4A4	Acinetobacter_phage	51.3	9.0e-28
>prophage 2
LR134311	Escherichia coli strain NCTC9113 genome assembly, chromosome: 1	4853909	885004	924526	4853909	transposase,tRNA,integrase	Stx2-converting_phage(35.71%)	38	914006:914020	922604:922618
VEE94426.1|885004_886207_+	Immunoglobulin-binding protein from prophage P-EibD	NA	Q9MCI8	Enterobacteria_phage	62.5	1.0e-41
VEE94428.1|886334_886541_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE94430.1|886603_887080_+	Uncharacterised protein	NA	Q9LA52	Enterobacteria_phage	46.4	8.8e-29
VEE94432.1|887278_888814_-|transposase	transposase ORF 1, IS66 family	transposase	A0A0P0ZBS5	Stx2-converting_phage	88.1	4.8e-262
VEE94434.1|888863_889211_-	prophage CP-933O IS protein	NA	A0A0P0ZDM8	Stx2-converting_phage	95.7	2.7e-59
VEE94436.1|889207_889591_-|transposase	putative transposase	transposase	Q6H9S5	Enterobacteria_phage	50.0	3.0e-11
VEE94438.1|889687_890224_+	transcriptional regulator FimZ	NA	NA	NA	NA	NA
VEE94440.1|890239_890428_+	Uncharacterized homolog of Blt101	NA	NA	NA	NA	NA
VEE94442.1|890424_890520_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE94444.1|890523_891420_+	mechanosensitive channel MscS	NA	NA	NA	NA	NA
VEE94446.1|891545_892766_+	putative phosphoadenosine phosphosulfate reductase	NA	A0A220GKF8	Streptococcus_phage	34.6	1.6e-63
VEE94448.1|892952_894740_+	putative helicase	NA	NA	NA	NA	NA
VEE94450.1|894921_895551_-	ParB-like nuclease	NA	A0A0F7L444	uncultured_marine_virus	50.2	2.0e-52
VEE94452.1|896140_896932_-	Nickel uptake substrate-specific transmembrane region	NA	NA	NA	NA	NA
VEE94454.1|896950_898921_-	putative outer membrane heme/hemoglobin receptor	NA	NA	NA	NA	NA
VEE94456.1|899322_899472_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE94458.1|900031_901051_-|transposase	putative transposase, IS110 family	transposase	NA	NA	NA	NA
VEE94460.1|901365_901623_-|transposase	putative transposase, IS110 family	transposase	NA	NA	NA	NA
VEE94462.1|901796_902012_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE94464.1|902182_902578_+|transposase	putative transposase	transposase	Q76S41	Shigella_phage	77.1	4.0e-43
VEE94466.1|902535_903123_+|transposase	putative transposase	transposase	Q9ZXG3	Shigella_phage	57.9	2.7e-56
VEE94468.1|903583_903841_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE94470.1|903909_905607_-	sulfatase ydeN	NA	NA	NA	NA	NA
VEE94472.1|905701_906838_-	outer membrane porin protein from phage origin	NA	Q1MVN1	Enterobacteria_phage	56.3	1.4e-117
VEE94474.1|907901_908090_-	Rac prophage; predicted protein	NA	NA	NA	NA	NA
VEE94476.1|908987_909725_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
VEE94478.1|910450_910831_+|transposase	transposase	transposase	A0A0P0ZBP6	Stx2-converting_phage	100.0	1.4e-66
VEE94480.1|910827_911175_+	prophage CP-933O IS protein	NA	A0A0P0ZBY2	Stx2-converting_phage	99.1	1.4e-60
VEE94482.1|911224_912763_+|transposase	putative transposase ORF 1, IS66 family	transposase	A0A0P0ZBS5	Stx2-converting_phage	98.4	1.3e-294
VEE94484.1|913455_914499_-	ShiA-like protein	NA	NA	NA	NA	NA
914006:914020	attL	GCGCCAGTGCGTAAC	NA	NA	NA	NA
VEE94486.1|914754_916020_-|integrase	integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	42.8	7.6e-80
VEE94488.1|916398_917106_-	membrane protein YqgA	NA	NA	NA	NA	NA
VEE94490.1|917503_919639_+	Ornithine decarboxylase	NA	NA	NA	NA	NA
VEE94492.1|919688_920945_-	nucleoside permease	NA	NA	NA	NA	NA
VEE94494.1|921146_922226_-	membrane-bound lytic murein transglycosylase C	NA	NA	NA	NA	NA
VEE94496.1|922290_922566_-	Fe(2+)-trafficking protein	NA	NA	NA	NA	NA
VEE94498.1|922593_923646_-	adenine DNA glycosylase	NA	NA	NA	NA	NA
922604:922618	attR	GCGCCAGTGCGTAAC	NA	NA	NA	NA
VEE94500.1|923806_924526_+|tRNA	tRNA (guanine-N(7)-)-methyltransferase	tRNA	NA	NA	NA	NA
>prophage 3
LR134311	Escherichia coli strain NCTC9113 genome assembly, chromosome: 1	4853909	1167696	1174836	4853909	tRNA	Escherichia_phage(83.33%)	6	NA	NA
VEE94895.1|1167696_1168335_-	aldolase	NA	A0A077SK32	Escherichia_phage	75.0	1.4e-82
VEE94897.1|1168331_1169594_-|tRNA	paral putative tRNA synthase	tRNA	A0A077SLJ7	Escherichia_phage	61.4	3.7e-135
VEE94899.1|1169590_1170499_-	oxidoreductase YgbJ	NA	A0A077SLF7	Escherichia_phage	76.9	3.0e-118
VEE94901.1|1170694_1171462_+	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	56.7	3.3e-70
VEE94903.1|1171512_1172169_-	serine/threonine-specific protein phosphatase 2	NA	A0A222YWF0	Escherichia_phage	46.3	8.0e-49
VEE94905.1|1172274_1174836_-	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	20.6	1.7e-30
>prophage 4
LR134311	Escherichia coli strain NCTC9113 genome assembly, chromosome: 1	4853909	1210189	1266356	4853909	tRNA,transposase,integrase	Vibrio_phage(14.29%)	52	1208628:1208644	1269643:1269659
1208628:1208644	attL	AGCAGGCACTGGAAATC	NA	NA	NA	NA
VEE94979.1|1210189_1212820_+|tRNA	alanyl-tRNA synthetase	tRNA	A0A2K9L1X7	Tupanvirus	38.6	5.5e-80
VEE94981.1|1213054_1213240_+	carbon storage regulator	NA	A0A2I7RT00	Vibrio_phage	66.7	4.9e-12
VEE94983.1|1214832_1215399_+	putative phosphatase	NA	NA	NA	NA	NA
VEE94985.1|1215395_1215824_+	inner membrane protein	NA	NA	NA	NA	NA
VEE94987.1|1215896_1217453_+	glutamate--cysteine ligase	NA	NA	NA	NA	NA
VEE94989.1|1217602_1218118_+	S-ribosylhomocysteinase	NA	NA	NA	NA	NA
VEE94991.1|1218181_1219720_-	multidrug resistance protein B	NA	NA	NA	NA	NA
VEE94993.1|1219736_1220909_-	multidrug resistance protein A	NA	NA	NA	NA	NA
VEE94995.1|1221035_1221566_-	MarR-family transcriptional repressor	NA	NA	NA	NA	NA
VEE94997.1|1221656_1221992_-	putative inner membrane protein	NA	NA	NA	NA	NA
VEE94999.1|1221981_1222719_-	AzlC-like membrane protein	NA	NA	NA	NA	NA
VEE95001.1|1222842_1224027_-	major facilitator superfamily protein	NA	NA	NA	NA	NA
VEE95003.1|1224318_1225311_-	glycine betaine/L-proline ABC transporter, substrate-binding protein	NA	NA	NA	NA	NA
VEE95005.1|1225368_1226433_-	glycine betaine/L-proline ABC transporter permease	NA	NA	NA	NA	NA
VEE95007.1|1226425_1227628_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	39.4	4.9e-28
VEE95009.1|1227982_1228942_-	ribonucleoside-diphosphate reductase 2 beta chain	NA	R4TBI6	Mycobacterium_phage	71.5	2.2e-132
VEE95011.1|1228951_1231096_-	ribonucleoside-diphosphate reductase 2 alpha chain	NA	A8E2R1	Enterococcus_phage	48.4	3.8e-196
VEE95013.1|1231068_1231479_-	ribonucleotide reductase stimulatory protein	NA	A0A142F1R4	Bacillus_phage	44.4	2.7e-18
VEE95015.1|1231475_1231721_-	glutaredoxin-like protein	NA	Q5K5J3	Oenococcus_phage	35.3	1.8e-06
VEE95017.1|1231968_1232298_-	protein	NA	NA	NA	NA	NA
VEE95019.1|1232449_1232794_+	protein	NA	NA	NA	NA	NA
VEE95021.1|1232830_1233280_-	inner membrane protein	NA	NA	NA	NA	NA
VEE95023.1|1233947_1234352_+	DNA-binding protein	NA	NA	NA	NA	NA
VEE95026.1|1234398_1234923_-	inner membrane protein with hydrolase activity	NA	NA	NA	NA	NA
VEE95028.1|1234932_1235232_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
VEE95030.1|1235414_1235573_+	membrane protein	NA	NA	NA	NA	NA
VEE95032.1|1235656_1236106_+	putative peptidoglycan-binding protein	NA	A0A090DBR9	Clostridium_phage	39.5	2.0e-06
VEE95034.1|1236106_1236769_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
VEE95036.1|1236789_1238190_-	gamma-aminobutyrate transporter	NA	NA	NA	NA	NA
VEE95038.1|1238500_1239781_-	4-aminobutyrate aminotransferase	NA	A0A1V0SKB7	Klosneuvirus	30.1	2.4e-33
VEE95040.1|1239794_1241243_-	succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
VEE95042.1|1241265_1242534_-	hydroxyglutarate oxidase	NA	NA	NA	NA	NA
VEE95044.1|1242553_1243531_-	Protein CsiD	NA	NA	NA	NA	NA
VEE95046.1|1244277_1246119_-	alpha-amylase	NA	NA	NA	NA	NA
VEE95048.1|1247504_1247987_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE95050.1|1248086_1248878_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE95052.1|1249789_1250260_+	outer membrane protein	NA	NA	NA	NA	NA
VEE95054.1|1250229_1250976_-|transposase	IS911 transposase orfB	transposase	Q716C2	Shigella_phage	58.6	7.4e-83
VEE95056.1|1251463_1251763_-	GTP-binding factor (fragment) from CP4-like prophage	NA	NA	NA	NA	NA
VEE95058.1|1251928_1252168_-	phage transcriptional regulator AlpA	NA	A0A1V0E8E5	Vibrio_phage	49.2	2.5e-08
VEE95060.1|1252281_1253163_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE95062.1|1253430_1253610_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE95064.1|1253596_1254343_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE95066.1|1254388_1258240_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE95068.1|1258707_1258941_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE95070.1|1258968_1259268_+|transposase	transposase	transposase	NA	NA	NA	NA
VEE95072.1|1259264_1260131_+|transposase	IS3 element transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	40.2	1.9e-50
VEE95074.1|1260144_1261443_-	addiction module	NA	NA	NA	NA	NA
VEE95076.1|1261460_1262327_-|transposase	IS3 element transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	40.6	2.3e-51
VEE95078.1|1262323_1262623_-|transposase	transposase	transposase	NA	NA	NA	NA
VEE95080.1|1262723_1264976_+	addiction module	NA	NA	NA	NA	NA
VEE95082.1|1265192_1266356_-|integrase	integrase	integrase	A0A1B5FPC6	Escherichia_phage	47.8	1.2e-95
1269643:1269659	attR	GATTTCCAGTGCCTGCT	NA	NA	NA	NA
>prophage 5
LR134311	Escherichia coli strain NCTC9113 genome assembly, chromosome: 1	4853909	1772104	1781546	4853909		Enterobacteria_phage(85.71%)	10	NA	NA
VEE95998.1|1772104_1773031_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.8	2.8e-23
VEE96000.1|1773035_1773767_+	ABC transporter permease	NA	NA	NA	NA	NA
VEE96002.1|1773747_1773855_-	putative inner membrane protein	NA	NA	NA	NA	NA
VEE96004.1|1773914_1774646_-	MerR family transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	99.5	9.7e-112
VEE96006.1|1774867_1776553_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	99.6	2.5e-304
VEE96008.1|1776549_1777269_+	two-component response-regulatory protein YehT	NA	NA	NA	NA	NA
VEE96010.1|1777315_1777786_+	conserved protein, DUF1456 family	NA	Q9EYF4	Enterobacteria_phage	100.0	1.8e-82
VEE96012.1|1777826_1778288_-	lipoprotein yehR	NA	Q9EYF5	Enterobacteria_phage	100.0	1.9e-76
VEE96014.1|1778412_1780413_-	zinc finger SWIM domain-containing protein	NA	Q9EYF6	Enterobacteria_phage	96.1	0.0e+00
VEE96016.1|1780409_1781546_-	von Willebrand factor type A domain protein YehP	NA	Q9EYF7	Enterobacteria_phage	97.7	1.1e-162
>prophage 6
LR134311	Escherichia coli strain NCTC9113 genome assembly, chromosome: 1	4853909	2997476	3086036	4853909	terminase,capsid,integrase,portal,tRNA,protease,plate,tail,lysis	Salmonella_phage(61.82%)	88	2990438:2990453	3088607:3088622
2990438:2990453	attL	GTTACCGCCATCGCCA	NA	NA	NA	NA
VEE98349.1|2997476_2998769_-|tRNA	seryl-tRNA synthetase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	48.2	1.5e-94
VEE98351.1|2998859_3000203_-	putative ATPase	NA	G3MBE0	Bacillus_virus	40.8	2.1e-80
VEE98353.1|3000213_3000825_-	outer-membrane lipoprotein carrier protein	NA	NA	NA	NA	NA
VEE98355.1|3000983_3005051_-	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	48.7	1.2e-86
VEE98358.1|3005185_3005680_-	leucine-responsive transcriptional regulator	NA	NA	NA	NA	NA
VEE98360.1|3006224_3007190_+	thioredoxin reductase	NA	A0A2I2L5E1	Orpheovirus	44.6	8.5e-63
VEE98362.1|3007312_3009079_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	24.3	4.1e-23
VEE98364.1|3009079_3010801_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	25.2	3.2e-20
VEE98366.1|3010842_3011547_+|tRNA	leucyl/phenylalanyl-tRNA-protein transferase	tRNA	NA	NA	NA	NA
VEE98368.1|3011831_3012050_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
VEE98370.1|3012734_3015011_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A223W0B1	Agrobacterium_phage	42.5	1.9e-166
VEE98372.1|3015041_3015362_-|protease	ATP-dependent Clp protease adaptor protein	protease	A0A1B1IT64	uncultured_Mediterranean_phage	44.4	1.6e-13
VEE98374.1|3015684_3015909_+	stationary phase/starvation inducible regulatory protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	61.2	2.3e-16
VEE98376.1|3015981_3017928_-	macrolide export ATP-binding/permease protein	NA	G9BWD6	Planktothrix_phage	40.1	1.1e-37
VEE98378.1|3017924_3019022_-	macrolide-specific efflux protein	NA	NA	NA	NA	NA
VEE98380.1|3019154_3020147_+	virulence protein	NA	NA	NA	NA	NA
VEE98382.1|3020143_3021802_-	nucleoside triphosphate hydrolase domain	NA	NA	NA	NA	NA
VEE98384.1|3022227_3022923_+	aquaporin Z	NA	NA	NA	NA	NA
VEE98386.1|3023417_3024317_+	transporter	NA	NA	NA	NA	NA
VEE98389.1|3024460_3026113_+	hydroxylamine reductase	NA	NA	NA	NA	NA
VEE98391.1|3026124_3027093_+	HCP oxidoreductase, NADH-dependent	NA	NA	NA	NA	NA
VEE98393.1|3027225_3028944_+	pyruvate oxidase	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	24.1	4.0e-31
VEE98395.1|3028980_3029982_+	low specificity L-threonine aldolase	NA	NA	NA	NA	NA
VEE98397.1|3029992_3031423_+	NAD(P)-binding Rossmann-fold domain	NA	NA	NA	NA	NA
VEE98399.1|3031521_3032535_+	nucleotide di-P-sugar epimerase or dehydratase	NA	NA	NA	NA	NA
VEE98401.1|3032531_3033362_-	putative N-acetylmuramoyl-L-alanine amidase	NA	A0A1B0UZW5	Roseobacter_phage	30.0	5.7e-07
VEE98403.1|3033358_3033682_-	conserved protein, UPF0145 family	NA	NA	NA	NA	NA
VEE98405.1|3033807_3034323_+	lipoprotein	NA	NA	NA	NA	NA
VEE98406.1|3034540_3035269_+	arginine transport system ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.7	6.0e-29
VEE98408.1|3035286_3036018_+	arginine ABC transporter, substrate-binding protein	NA	NA	NA	NA	NA
VEE98410.1|3036024_3036741_+	arginine transport system permease	NA	NA	NA	NA	NA
VEE98412.1|3036740_3037409_+	arginine ABC transporter permease	NA	NA	NA	NA	NA
VEE98414.1|3037700_3038432_+	arginine/ornithine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
VEE98416.1|3038606_3039734_-	23S rRNA (uracil-5-)-methyltransferase	NA	A0A1X9I6F4	Streptococcus_phage	27.6	3.5e-28
VEE98418.1|3039774_3040263_-	inner membrane protein	NA	NA	NA	NA	NA
VEE98420.1|3040322_3041168_-	putrescine ABC transporter membrane protein	NA	NA	NA	NA	NA
VEE98422.1|3041164_3042118_-	putrescine ABC transporter membrane protein	NA	NA	NA	NA	NA
VEE98424.1|3042127_3043261_-	putrescine ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.4	5.0e-30
VEE98426.1|3043355_3044468_-	putrescine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
VEE98428.1|3044819_3045296_-	TPR repeat-containing protein	NA	NA	NA	NA	NA
VEE98430.1|3045383_3046286_-	ribosomal protein S6 modification protein	NA	I3ULC9	Synechococcus_phage	34.4	2.6e-37
VEE98432.1|3046346_3047069_-	nitroreductase NfsA	NA	NA	NA	NA	NA
VEE98434.1|3047052_3047340_-	inner membrane protein	NA	NA	NA	NA	NA
VEE98436.1|3047499_3047757_+	glutaredoxin	NA	A0A2I7SAE2	Vibrio_phage	61.9	8.6e-23
VEE98438.1|3047786_3048164_-	inner membrane protein YbjM	NA	NA	NA	NA	NA
VEE98440.1|3048433_3050119_+	putative transport protein with two RCK domains	NA	NA	NA	NA	NA
VEE98442.1|3050354_3050573_-	prophage P2 OGR-like protein	NA	Q53ZE7	Salmonella_virus	69.0	7.5e-20
VEE98444.1|3050663_3051764_-	Late control protein D protein	NA	E5G6Q3	Salmonella_phage	85.0	1.7e-176
VEE98446.1|3051760_3052246_-|tail	bacteriophage tail protein GpU	tail	E5G6Q2	Salmonella_phage	81.2	1.7e-67
VEE98448.1|3052242_3055320_-|tail	TP901 family phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	63.0	0.0e+00
VEE98450.1|3055446_3055749_-|tail	tail E family protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	5.3e-40
VEE98452.1|3055803_3056319_-|tail	phage major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.3	2.1e-89
VEE98454.1|3056328_3057501_-|tail	tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	90.3	4.6e-204
VEE98456.1|3057633_3058068_-	CPS-53 (KpLE1) prophage protein	NA	A0A0F7LDZ0	Escherichia_phage	40.6	4.2e-22
VEE98458.1|3058067_3059798_-|tail	tail fiber domain-containing protein	tail	A0A0M3ULH6	Salmonella_phage	62.8	4.7e-80
VEE98460.1|3059794_3060400_-|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	93.0	1.8e-111
VEE98462.1|3060392_3061301_-|plate	Baseplate assembly protein GpJ	plate	A0A1S6KZY6	Salmonella_phage	90.1	1.0e-142
VEE98464.1|3061287_3061647_-	GPW/gp25 family protein	NA	A0A1S6KZZ4	Salmonella_phage	85.7	2.8e-51
VEE98466.1|3061643_3062222_-|plate	phage baseplate assembly protein V	plate	A0A1S6KZX7	Salmonella_phage	87.0	5.5e-94
VEE98468.1|3062345_3063398_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE98469.1|3063527_3063983_-|tail	phage tail completion protein	tail	A0A1S6L001	Salmonella_phage	78.9	4.0e-55
VEE98470.1|3063975_3064407_-|tail	phage tail protein	tail	E5G6N3	Salmonella_phage	90.2	2.7e-69
VEE98471.1|3064502_3064931_-|lysis	lysis-like protein	lysis	E5G6N2	Salmonella_phage	91.5	1.9e-59
VEE98472.1|3064927_3065443_-	glycoside hydrolase family protein	NA	E5G6N1	Salmonella_phage	91.8	3.7e-89
VEE98473.1|3065423_3065639_-	putative secretory protein	NA	E5G6N0	Salmonella_phage	80.3	1.8e-26
VEE98474.1|3065642_3065846_-|tail	tail X family protein	tail	E5G6M9	Salmonella_phage	91.0	6.8e-31
VEE98475.1|3065845_3066310_-|capsid	capsid completion protein	capsid	A0A1S6KZW8	Salmonella_phage	89.6	8.4e-77
VEE98476.1|3066405_3067056_-|terminase	small terminase subunit	terminase	E5G6M7	Salmonella_phage	95.8	1.9e-111
VEE98477.1|3067059_3068118_-|capsid	P2 family phage major capsid protein	capsid	E5G6M6	Salmonella_phage	93.4	2.9e-181
VEE98478.1|3068134_3068968_-|capsid	capsid scaffolding	capsid	A0A1S6KZW9	Salmonella_phage	91.0	2.8e-123
VEE98479.1|3069110_3070877_+	Terminase, ATPase subunit	NA	A0A1S6KZW3	Salmonella_phage	99.5	0.0e+00
VEE98480.1|3070876_3071905_+|capsid,portal	capsid portal protein	capsid,portal	A0A1S6KZW5	Salmonella_phage	87.6	8.4e-170
VEE98481.1|3071954_3074291_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VEE98482.1|3074890_3077011_-	phage inhibition protein	NA	NA	NA	NA	NA
VEE98483.1|3077455_3077689_-	Prophage protein	NA	E5G6M1	Salmonella_phage	98.7	2.3e-35
VEE98484.1|3077699_3077888_-	Uncharacterised protein	NA	E5G6M0	Salmonella_phage	98.4	5.5e-27
VEE98485.1|3078040_3080413_-	putative replication protein for prophage	NA	E5G6L9	Salmonella_phage	97.2	0.0e+00
VEE98486.1|3080412_3081234_-	Uncharacterised protein	NA	A0A0M4RCP6	Salmonella_phage	75.7	1.1e-122
VEE98487.1|3081239_3082094_-	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	90.1	2.9e-147
VEE98488.1|3082090_3082318_-	TraR/DksA family transcriptional regulator	NA	E5G6L7	Salmonella_phage	98.7	3.5e-36
VEE98489.1|3082317_3082551_-	Protein of uncharacterised function (DUF2732)	NA	E5G6L6	Salmonella_phage	97.4	1.1e-32
VEE98490.1|3082618_3082960_-	Uncharacterised protein	NA	E5G6L5	Salmonella_phage	98.2	1.3e-55
VEE98491.1|3082923_3083124_-	Protein of uncharacterised function (DUF2724)	NA	E5G6L4	Salmonella_phage	98.5	7.1e-33
VEE98492.1|3083131_3083641_-	phage regulatory protein CII	NA	E5G6L3	Salmonella_phage	98.8	5.8e-87
VEE98493.1|3083673_3083895_-	ybl30	NA	NA	NA	NA	NA
VEE98494.1|3084020_3084590_+	repressor protein	NA	A0A1S6KZZ7	Salmonella_phage	42.9	9.4e-38
VEE98495.1|3084605_3084797_+	Uncharacterised protein	NA	A0A0R6PIH8	Moraxella_phage	68.2	4.0e-09
VEE98496.1|3084983_3086036_+|integrase	integrase	integrase	A0A218M4I3	Erwinia_phage	57.0	6.1e-107
3088607:3088622	attR	TGGCGATGGCGGTAAC	NA	NA	NA	NA
>prophage 7
LR134311	Escherichia coli strain NCTC9113 genome assembly, chromosome: 1	4853909	3396942	3454043	4853909	terminase,capsid,integrase,portal,tRNA,protease,tail,lysis,head,coat	Enterobacteria_phage(65.45%)	69	3396474:3396520	3443836:3443882
3396474:3396520	attL	AATGGCGCGCCCTGCAGGATTCGAACCTGCGGCCCACGACTTAGAAG	NA	NA	NA	NA
VEE98766.1|3396942_3397896_+|protease	outer membrane protease	protease	NA	NA	NA	NA
VEE98767.1|3398082_3399567_+|protease	putative protease	protease	NA	NA	NA	NA
VEE98769.1|3400124_3400781_+	methylase	NA	NA	NA	NA	NA
VEE98771.1|3401419_3404815_-|tail	phage side tail fiber protein	tail	X2KTY7	Enterobacteria_phage	35.5	1.8e-11
VEE98773.1|3404879_3405479_-	outer membrane precursor Lom	NA	A0A0P0ZCF6	Stx2-converting_phage	98.0	9.7e-110
VEE98775.1|3405545_3408944_-	Host specificity protein J	NA	K7PKJ2	Enterobacteria_phage	90.3	0.0e+00
VEE98777.1|3409004_3409577_-|tail	phage tail assembly protein	tail	A0A0K2FJB0	Escherichia_phage	99.5	6.7e-84
VEE98779.1|3409573_3410317_-|tail	putative tail fiber component K of prophage	tail	K7PLW1	Enterobacteria_phage	96.8	2.5e-147
VEE98781.1|3410322_3411021_-|tail	phage minor tail protein	tail	A0A0K2FJ01	Enterobacteria_phage	99.6	5.1e-134
VEE98783.1|3411020_3411350_-|tail	Minor tail protein M	tail	A0A0K2FIE9	Enterobacteria_phage	100.0	9.6e-59
VEE98785.1|3411346_3413908_-|tail	tail component of prophage	tail	A0A0K2FI43	Enterobacteria_phage	92.5	0.0e+00
VEE98787.1|3413900_3414335_-|tail	minor tail protein T	tail	A0A0K2FJB3	Enterobacteria_phage	99.2	1.5e-64
VEE98789.1|3414316_3414739_-|tail	phage minor tail protein	tail	A0A0K2FIQ8	Enterobacteria_phage	99.3	9.7e-72
VEE98791.1|3414754_3415495_-|tail	Major tail protein V	tail	A0A0K2FJ05	Enterobacteria_phage	96.7	2.0e-128
VEE98793.1|3415502_3415898_-|tail	phage minor tail protein	tail	A0A0K2FIF4	Enterobacteria_phage	100.0	1.0e-70
VEE98795.1|3415894_3416473_-|tail	minor tail protein	tail	A0A2R9YJK4	Escherichia_phage	97.9	3.5e-80
VEE98797.1|3416484_3416838_-|capsid	minor capsid protein	capsid	A0A2R9YJJ5	Escherichia_phage	98.3	2.6e-62
VEE98799.1|3416849_3417245_-	DNA packaging protein from bacteriophage origin	NA	A0A2R9YJP4	Escherichia_phage	95.5	5.7e-58
VEE98801.1|3417286_3418312_-|head,coat	phage major head protein (major coat protein)	head,coat	C6ZCY2	Enterobacteria_phage	97.7	1.4e-188
VEE98803.1|3418367_3418700_-	Head decoration protein from bacteriophage origin	NA	A0A2R9YJN3	Escherichia_phage	99.1	3.8e-55
VEE98805.1|3418709_3420029_-|capsid	minor capsid protein C from bacteriophage origin	capsid	A0A2I6TC87	Escherichia_phage	98.2	2.6e-232
VEE98807.1|3420009_3421611_-|capsid,portal	phage portal protein (minor capsid protein)	capsid,portal	A0A0K2FJC0	Enterobacteria_phage	98.9	1.9e-309
VEE98809.1|3421607_3421814_-|head,tail	head-to-tail joining protein W	head,tail	A0A2R9YJL2	Escherichia_phage	100.0	5.8e-30
VEE98811.1|3421810_3423736_-|terminase	phage terminase large subunit	terminase	A0A0K2FJ14	Enterobacteria_phage	99.5	0.0e+00
VEE98813.1|3423710_3424256_-	prophage qsr' DNA packaging protein NU1-like protein	NA	A0A0K2FIG2	Enterobacteria_phage	98.9	1.4e-94
VEE98815.1|3425089_3425296_-	DLP12 prophage; predicted protein	NA	A0A0K2FJ18	Enterobacteria_phage	94.1	9.3e-28
VEE98817.1|3425581_3425992_+	putative envelope protein	NA	C6ZCX4	Enterobacteria_phage	99.3	9.4e-72
VEE98819.1|3426282_3426576_+	lambdoid prophage DLP12 Bor-like protein	NA	K7PL54	Enterobacteria_phage	100.0	4.0e-48
VEE98821.1|3426607_3427069_-	Rz endopeptidase from lambdoid prophage DLP12	NA	A0A0K2FJD0	Enterobacteria_phage	98.7	3.5e-75
VEE98823.1|3427065_3427563_-	phage lysozome	NA	A5LH83	Enterobacteria_phage	98.8	4.9e-91
VEE98825.1|3427562_3427778_-|lysis	phage lysis protein	lysis	A5LH82	Enterobacteria_phage	100.0	9.0e-34
VEE98827.1|3428351_3429449_+	outer membrane porin; DLP12 prophage	NA	Q1MVN1	Enterobacteria_phage	76.5	2.2e-155
VEE98829.1|3429638_3430022_-	lambdoid prophage DLP12 antitermination protein Q	NA	A0A088CD47	Shigella_phage	83.3	4.4e-55
VEE98831.1|3430107_3430245_-	DLP12 prophage; small protein	NA	K7PHH3	Enterobacteria_phage	73.2	2.9e-09
VEE98833.1|3430244_3430607_-	endodeoxyribonuclease RUS	NA	K7PM48	Enterobacteria_phage	96.5	9.5e-60
VEE98835.1|3430603_3430894_-	DLP12 prophage	NA	K7PGZ6	Enterobacteria_phage	95.8	6.7e-48
VEE98837.1|3430886_3431057_-	prophage protein NinE	NA	K7P7K0	Enterobacteria_phage	69.8	2.4e-13
VEE98839.1|3431056_3431512_-	DLP12 prophage; DNA base-flipping protein	NA	I6PD71	Cronobacter_phage	66.9	9.2e-60
VEE98841.1|3431702_3432155_-	17 kDa surface antigen	NA	NA	NA	NA	NA
VEE98843.1|3432151_3432712_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE98845.1|3432968_3433160_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE98847.1|3433197_3433491_-	ren protein from phage origin	NA	A0A0N6WES4	Escherichia_phage	95.7	1.1e-42
VEE98849.1|3433487_3434189_-	replication protein P of bacteriophage	NA	A0A0K2FIT1	Enterobacteria_phage	97.4	1.2e-127
VEE98851.1|3434185_3435190_-	replication protein O	NA	M1FN81	Enterobacteria_phage	67.6	1.7e-111
VEE98853.1|3435201_3435741_-	bacteriophage regulatory protein CII	NA	K7PJT7	Enterobacteria_phage	67.0	6.8e-62
VEE98855.1|3435771_3435999_-	represror Cro	NA	Q76H55	Enterobacteria_phage	69.0	3.8e-22
VEE98857.1|3436316_3436802_+	Regulatory protein CI from bacteriophage origin	NA	Q76H56	Enterobacteria_phage	84.5	3.1e-74
VEE98859.1|3436883_3437357_+	Uncharacterised protein	NA	K7PLT9	Enterobacteria_phage	61.6	1.3e-53
VEE98861.1|3437353_3438286_+	Uncharacterised protein	NA	K7PGT0	Enterobacteria_phage	54.4	2.8e-87
VEE98863.1|3438770_3438977_+	prophage Kil protein	NA	K7P6H3	Enterobacteria_phage	85.3	3.2e-28
VEE98865.1|3439052_3439349_+	host-nuclease inhibitor protein Gam	NA	A0A1I9LJN1	Stx_converting_phage	99.0	1.1e-48
VEE98867.1|3439354_3440140_+	bacteriophage recombination protein	NA	A0A1I9LJN0	Stx_converting_phage	99.6	1.1e-148
VEE98869.1|3440136_3440817_+	exonuclease	NA	B6DZ61	Enterobacteria_phage	98.2	5.1e-131
VEE98871.1|3440813_3440975_+	phage protein	NA	A0A0N7CHV0	Escherichia_phage	96.0	7.7e-22
VEE98873.1|3440967_3441525_+	DNA N-6-adenine-methyltransferase from phage origin	NA	E5AGF8	Erwinia_phage	62.3	2.0e-61
VEE98875.1|3441601_3441817_+	ybl17	NA	A0A1I9LJM7	Stx_converting_phage	100.0	1.0e-32
VEE98877.1|3441915_3442134_+	ybl16	NA	M1FQT7	Enterobacteria_phage	100.0	7.5e-36
VEE98879.1|3442181_3442460_+	bacteriophage protein	NA	M1FPC8	Enterobacteria_phage	97.8	4.9e-48
VEE98881.1|3442658_3443822_+|integrase	site-specific recombinase, phage integrase family protein	integrase	A0A088CD23	Shigella_phage	86.3	3.4e-199
VEE98883.1|3444156_3444789_+	two component transcriptional regulator, LuxR family	NA	NA	NA	NA	NA
3443836:3443882	attR	AATGGCGCGCCCTGCAGGATTCGAACCTGCGGCCCACGACTTAGAAG	NA	NA	NA	NA
VEE98885.1|3444791_3445307_-	fimbrial protein	NA	NA	NA	NA	NA
VEE98887.1|3445317_3446325_-	fimbrial protein	NA	NA	NA	NA	NA
VEE98889.1|3446337_3448947_-	fimbrial outer membrane usher protein	NA	NA	NA	NA	NA
VEE98891.1|3448977_3449670_-	fimbrial chaperone	NA	NA	NA	NA	NA
VEE98893.1|3449889_3450432_-	fimbrial-like protein	NA	NA	NA	NA	NA
VEE98895.1|3450912_3451779_+	5,10-methylene-tetrahydrofolate dehydrogenase	NA	A0A249XZQ2	Enterococcus_phage	37.5	1.7e-30
VEE98897.1|3451780_3451993_+	putative RNA-binding protein	NA	NA	NA	NA	NA
VEE98899.1|3452100_3452622_+	putative membrane-bound metal-dependent hydrolase	NA	NA	NA	NA	NA
VEE98901.1|3452657_3454043_-|tRNA	cysteinyl-tRNA synthetase	tRNA	M1PG92	Moumouvirus	34.8	3.9e-45
>prophage 8
LR134311	Escherichia coli strain NCTC9113 genome assembly, chromosome: 1	4853909	3741754	3760939	4853909	transposase	Enterobacteria_phage(50.0%)	18	NA	NA
VEE99390.1|3741754_3742549_-|transposase	Putative transposase	transposase	U5N3V8	Enterobacteria_phage	97.4	1.3e-138
VEE99392.1|3742754_3743762_-|transposase	IS21 family transposase	transposase	U5N3F9	Enterobacteria_phage	97.3	4.2e-190
VEE99394.1|3743749_3743914_-|transposase	transposase	transposase	U5N3F9	Enterobacteria_phage	94.1	5.7e-20
VEE99396.1|3743979_3744222_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE99398.1|3744223_3744796_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE99400.1|3744881_3745088_-	putative phage-related regulatory protein	NA	NA	NA	NA	NA
VEE99402.1|3745473_3746265_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE99404.1|3747521_3748121_+	Protein of uncharacterised function (DUF3296)	NA	NA	NA	NA	NA
VEE99406.1|3748492_3748876_+	DNA-directed RNA polymerase, beta subunit/140 kD subunit	NA	NA	NA	NA	NA
VEE99409.1|3748872_3749298_+	DNA-directed RNA polymerase, beta subunit/140 kD subunit	NA	NA	NA	NA	NA
VEE99411.1|3750708_3750900_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE99413.1|3750988_3751627_+	putative DNA-binding protein	NA	NA	NA	NA	NA
VEE99415.1|3751963_3753583_+	Putative type I restriction-modification system, DNA-methyltransferase subunit M	NA	A0A2H4UVW8	Bodo_saltans_virus	21.9	1.1e-06
VEE99417.1|3753572_3754988_+	type I restriction modification DNA specificity domain-containing protein	NA	NA	NA	NA	NA
VEE99419.1|3755082_3758337_+	type I restriction-modification system (hsdR-like)	NA	A0A220A398	Liberibacter_phage	26.8	1.3e-46
VEE99421.1|3758520_3758946_+|transposase	putative transposase	transposase	Q6H9S5	Enterobacteria_phage	74.2	9.5e-35
VEE99423.1|3758942_3759284_+|transposase	transposase	transposase	A0A0P0ZDM8	Stx2-converting_phage	61.6	1.7e-21
VEE99425.1|3759325_3760939_+|transposase	transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	65.4	8.9e-166
>prophage 9
LR134311	Escherichia coli strain NCTC9113 genome assembly, chromosome: 1	4853909	4192284	4210532	4853909	transposase	Stx2-converting_phage(45.45%)	18	NA	NA
VEF00196.1|4192284_4192665_+|transposase	transposase	transposase	A0A0P0ZBP6	Stx2-converting_phage	97.6	2.3e-64
VEF00198.1|4192661_4193009_+|transposase	transposase	transposase	A0A0P0ZBY2	Stx2-converting_phage	98.3	1.4e-60
VEF00200.1|4193058_4194444_+|transposase	transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	89.3	2.0e-259
VEF00202.1|4194682_4196041_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VEF00204.1|4196773_4197031_-	Biofilm development protein YmgB/AriR	NA	NA	NA	NA	NA
VEF00206.1|4197975_4198293_-	IS1 protein InsB	NA	U5P0U6	Shigella_phage	87.6	7.6e-45
VEF00208.1|4198778_4199300_+	RNA polymerase sigma factor	NA	NA	NA	NA	NA
VEF00210.1|4199296_4200250_+	iron(III) dicitrate sensor protein	NA	NA	NA	NA	NA
VEF00212.1|4200336_4202661_+	iron(III) dicitrate TonB-dependent receptor	NA	NA	NA	NA	NA
VEF00214.1|4202705_4203608_+	iron-dicitrate transporter substrate-binding subunit	NA	NA	NA	NA	NA
VEF00216.1|4203604_4204603_+	iron(III) dicitrate transport system, permease protein	NA	NA	NA	NA	NA
VEF00218.1|4204599_4205556_+	iron-dicitrate transporter subunit FecD	NA	A0A2H4IY97	uncultured_Caudovirales_phage	26.1	1.1e-17
VEF00220.1|4205556_4206324_+	iron(III) dicitrate transport system, ATP-binding protein	NA	G3M9Y6	Bacillus_virus	24.8	6.4e-13
VEF00222.1|4206970_4207354_+|transposase	putative transposase	transposase	Q6H9S5	Enterobacteria_phage	50.0	3.0e-11
VEF00224.1|4207350_4207698_+	prophage CP-933O IS protein	NA	A0A0P0ZDM8	Stx2-converting_phage	95.7	2.7e-59
VEF00226.1|4207747_4209283_+|transposase	transposase ORF 1, IS66 family	transposase	A0A0P0ZBS5	Stx2-converting_phage	88.1	4.8e-262
VEF00228.1|4209320_4209539_-|transposase	transposase	transposase	Q716C2	Shigella_phage	100.0	1.2e-38
VEF00230.1|4209800_4210532_-|transposase	transposase, IS30	transposase	W5R8L2	Staphylococcus_phage	36.7	8.1e-34
