assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900636785.1_44257_F01	LR134311	Escherichia coli strain NCTC9113 genome assembly, chromosome: 1	1	615623-615740	1	CRISPRCasFinder	no		cas3,csa3,PD-DExK,c2c4_V-U1,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	40	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,c2c4_V-U1,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA|180aa|up_9|LR134311.1_602549_603089_-,NA|55aa|down_0|LR134311.1_615813_615978_-	NA|180aa|up_9|LR134311.1_602549_603089_-	NA	NA|313aa|up_8|LR134311.1_603877_604816_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|up_7|LR134311.1_604914_605904_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|up_6|LR134311.1_605925_607257_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|up_5|LR134311.1_607282_608491_+	PRK12379, PRK12379, propionate kinase	NA|765aa|up_4|LR134311.1_608524_610819_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|up_3|LR134311.1_610832_611222_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|up_2|LR134311.1_611293_612658_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|up_1|LR134311.1_612932_614264_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|up_0|LR134311.1_614291_615602_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_0|LR134311.1_615813_615978_-	NA	NA|234aa|down_1|LR134311.1_616000_616702_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|299aa|down_2|LR134311.1_616806_617703_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|119aa|down_3|LR134311.1_617753_618110_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|122aa|down_4|LR134311.1_618351_618717_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|329aa|down_5|LR134311.1_619009_619996_-	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|161aa|down_6|LR134311.1_620065_620548_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|100aa|down_7|LR134311.1_620643_620943_-	pfam13997, YqjK, YqjK-like protein	NA|135aa|down_8|LR134311.1_620932_621337_-	COG5393, COG5393, Predicted membrane protein [Function unknown]	NA|102aa|down_9|LR134311.1_621339_621645_-	COG4575, ElaB, Uncharacterized conserved protein [Function unknown]
GCA_900636785.1_44257_F01	LR134311	Escherichia coli strain NCTC9113 genome assembly, chromosome: 1	2	1134012-1135199	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,PD-DExK,c2c4_V-U1,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	18,19,19	19	TypeI-E	cas3,csa3,PD-DExK,c2c4_V-U1,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA|121aa|up_3|LR134311.1_1130908_1131271_-,NA	NA|745aa|up_9|LR134311.1_1123844_1126079_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_8|LR134311.1_1126156_1126405_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_7|LR134311.1_1126404_1126740_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_6|LR134311.1_1126810_1127602_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_5|LR134311.1_1127829_1129467_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_4|LR134311.1_1129554_1130853_+	PRK00077, eno, enolase; Provisional	NA|121aa|up_3|LR134311.1_1130908_1131271_-	NA	NA|302aa|up_2|LR134311.1_1131306_1132212_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|201aa|up_1|LR134311.1_1132225_1132828_-	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|224aa|up_0|LR134311.1_1133000_1133672_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|174aa|down_0|LR134311.1_1135837_1136359_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|122aa|down_1|LR134311.1_1136431_1136797_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|LR134311.1_1137112_1138912_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|LR134311.1_1138911_1140624_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|LR134311.1_1140697_1141432_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3|900aa|down_5|LR134311.1_1142042_1144742_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|down_6|LR134311.1_1144839_1146402_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|down_7|LR134311.1_1146398_1146935_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|down_8|LR134311.1_1146949_1148005_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|down_9|LR134311.1_1148015_1148762_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5
GCA_900636785.1_44257_F01	LR134311	Escherichia coli strain NCTC9113 genome assembly, chromosome: 1	3	1150701-1151340	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,PD-DExK,c2c4_V-U1,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	10,10,10	10	TypeI-E	cas3,csa3,PD-DExK,c2c4_V-U1,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|571aa|up_9|LR134311.1_1138911_1140624_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|LR134311.1_1140697_1141432_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3|900aa|up_7|LR134311.1_1142042_1144742_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|LR134311.1_1144839_1146402_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|LR134311.1_1146398_1146935_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|up_4|LR134311.1_1146949_1148005_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|LR134311.1_1148015_1148762_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|LR134311.1_1148743_1149394_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|LR134311.1_1149390_1150314_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|LR134311.1_1150310_1150604_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|LR134311.1_1151422_1152460_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|LR134311.1_1152711_1153620_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|LR134311.1_1153621_1155049_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|LR134311.1_1155048_1155654_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|LR134311.1_1155703_1156027_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|LR134311.1_1156220_1156532_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|LR134311.1_1156550_1157261_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|LR134311.1_1157260_1157740_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|LR134311.1_1157736_1158786_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|LR134311.1_1158766_1159528_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_900636785.1_44257_F01	LR134311	Escherichia coli strain NCTC9113 genome assembly, chromosome: 1	4	2258698-2258821	4	CRISPRCasFinder	no	DEDDh	cas3,csa3,PD-DExK,c2c4_V-U1,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,c2c4_V-U1,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|79aa|up_9|LR134311.1_2247604_2247841_-	PRK15396, PRK15396, major outer membrane lipoprotein	NA|471aa|up_8|LR134311.1_2248151_2249564_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_7|LR134311.1_2250120_2250330_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_6|LR134311.1_2250785_2251412_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_5|LR134311.1_2251432_2253535_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_4|LR134311.1_2253547_2254186_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_3|LR134311.1_2254249_2254918_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_2|LR134311.1_2254914_2255700_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|255aa|up_1|LR134311.1_2255751_2256516_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_0|LR134311.1_2256527_2258132_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|419aa|down_0|LR134311.1_2259135_2260392_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|LR134311.1_2260432_2261806_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|LR134311.1_2262020_2262662_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|LR134311.1_2262701_2263850_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|LR134311.1_2264140_2265352_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|LR134311.1_2265464_2266397_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|LR134311.1_2266393_2267419_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|390aa|down_7|LR134311.1_2267972_2269142_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_8|LR134311.1_2269287_2269869_-	PRK10543, PRK10543, superoxide dismutase [Fe]	NA|272aa|down_9|LR134311.1_2269996_2270812_-	pfam00877, NLPC_P60, NlpC/P60 family
GCA_900636785.1_44257_F01	LR134311	Escherichia coli strain NCTC9113 genome assembly, chromosome: 1	7	3457192-3457288	6	CRISPRCasFinder	no		cas3,csa3,PD-DExK,c2c4_V-U1,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,c2c4_V-U1,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|231aa|up_9|LR134311.1_3448977_3449670_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|LR134311.1_3449889_3450432_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|LR134311.1_3450912_3451779_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|LR134311.1_3451780_3451993_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|LR134311.1_3452100_3452622_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|LR134311.1_3452657_3454043_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|LR134311.1_3454216_3454711_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|LR134311.1_3454713_3455436_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|LR134311.1_3455553_3456063_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|LR134311.1_3456059_3457127_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|LR134311.1_3457321_3458215_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|LR134311.1_3458211_3459027_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|LR134311.1_3459037_3460297_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|LR134311.1_3460306_3461974_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|LR134311.1_3462290_3463340_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|LR134311.1_3463361_3464597_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|LR134311.1_3464607_3465393_+	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|382aa|down_7|LR134311.1_3465521_3466667_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|LR134311.1_3466688_3467990_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|LR134311.1_3468046_3469408_-	PRK08044, PRK08044, allantoinase AllB
