The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR134312	Enterococcus faecalis strain NCTC8745 genome assembly, chromosome: 1	2719199	1072470	1090243	2719199	tail,holin	Enterococcus_phage(42.86%)	21	NA	NA
VEE95568.1|1072470_1074867_+	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	24.1	1.3e-19
VEE95571.1|1074891_1075242_+	ribosome-binding factor A	NA	NA	NA	NA	NA
VEE95573.1|1075324_1075555_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE95575.1|1075614_1076088_-	Uncharacterised protein	NA	A0A097BY56	Enterococcus_phage	71.2	1.1e-60
VEE95577.1|1076134_1076617_-	cI-like repressor, S. pneumoniae bacteriophage EJ-1	NA	R9QTP6	Staphylococcus_phage	48.6	1.2e-20
VEE95579.1|1076833_1076968_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE95581.1|1076998_1077769_+	putative DNA replication protein	NA	A0A0K0MX39	Streptococcus_phage	57.0	2.5e-33
VEE95583.1|1077950_1078631_+	putative phage replication protein	NA	A0A0P0I3L9	Lactobacillus_phage	31.7	1.1e-24
VEE95585.1|1078633_1078726_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE95587.1|1078718_1079090_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE95589.1|1079109_1079517_+	phage transcriptional regulator, RinA family	NA	NA	NA	NA	NA
VEE95591.1|1079762_1080155_+	phage protein	NA	NA	NA	NA	NA
VEE95593.1|1080167_1080680_+|tail	Phage tail protein	tail	W6LP72	Streptococcus_phage	49.4	8.8e-35
VEE95595.1|1080712_1081072_+	phage protein	NA	A0A0F6N4J9	Staphylococcus_phage	32.2	7.6e-09
VEE95597.1|1081089_1081458_+	phage protein	NA	A0A1P8BLR3	Lactococcus_phage	39.7	4.6e-09
VEE95599.1|1081447_1084381_+	phage protein	NA	W8EBC4	Geobacillus_phage	41.2	6.9e-15
VEE95601.1|1084382_1085309_+|tail	phage tail protein	tail	C9E2K5	Enterococcus_phage	78.6	9.0e-147
VEE95603.1|1085321_1086779_+	phage minor structural protein, N-terminal region	NA	C9E2K6	Enterococcus_phage	47.7	9.5e-175
VEE95605.1|1086811_1088581_+	Uncharacterised protein	NA	A0A097BYA8	Enterococcus_phage	72.3	1.8e-143
VEE95607.1|1088604_1089000_+|holin	holin	holin	F0PIJ6	Enterococcus_phage	48.9	2.8e-33
VEE95609.1|1089145_1090243_+	autolysin	NA	A0A139ZVY1	Enterococcus_phage	44.3	2.6e-76
>prophage 2
LR134312	Enterococcus faecalis strain NCTC8745 genome assembly, chromosome: 1	2719199	1341202	1397356	2719199	integrase,protease,transposase	Bacillus_virus(33.33%)	51	1380399:1380414	1404963:1404978
VEE96048.1|1341202_1341325_+|transposase	transposase	transposase	NA	NA	NA	NA
VEE96049.1|1341374_1342199_+|integrase	putative integrase protein	integrase	Q9MBM9	Staphylococcus_prophage	41.8	2.0e-49
VEE96051.1|1342493_1343927_-	deoxyribodipyrimidine photolyase	NA	A0A1V0SGL1	Hokovirus	34.3	4.2e-66
VEE96053.1|1344060_1344906_-	transcriptional regulator	NA	NA	NA	NA	NA
VEE96055.1|1345214_1347143_-	PTS system sucrose-specific IIBC component	NA	NA	NA	NA	NA
VEE96057.1|1347159_1348833_-	oligo-1,6-glucosidase	NA	NA	NA	NA	NA
VEE96059.1|1349063_1350536_+	glycosyl hydrolases family 32	NA	NA	NA	NA	NA
VEE96061.1|1350551_1351535_+	sucrose operon repressor	NA	NA	NA	NA	NA
VEE96063.1|1351594_1351756_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE96065.1|1351865_1353275_-	glycosyl transferase family protein	NA	NA	NA	NA	NA
VEE96067.1|1353274_1355155_-	PTS system beta-glucoside-specific transporter subunit IIABC	NA	NA	NA	NA	NA
VEE96069.1|1355436_1356897_-	phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase-like protein	NA	NA	NA	NA	NA
VEE96071.1|1357077_1357629_+	Uncharacterized protein conserved in bacteria (DUF2179)	NA	NA	NA	NA	NA
VEE96073.1|1357687_1358572_-	Domain of uncharacterised function (DUF1803)	NA	NA	NA	NA	NA
VEE96075.1|1358643_1359570_-	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
VEE96077.1|1359665_1360430_-	pyruvate formate-lyase activating enzyme	NA	NA	NA	NA	NA
VEE96079.1|1360506_1362753_-	pyruvate formate-lyase	NA	A0A2P0VNR5	Tetraselmis_virus	41.3	2.1e-165
VEE96081.1|1363042_1365505_-	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	30.7	2.9e-99
VEE96083.1|1365517_1367575_-	topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	41.3	4.5e-114
VEE96085.1|1367779_1368208_-	CoA-binding protein	NA	NA	NA	NA	NA
VEE96087.1|1368295_1368739_-	ethanolamine utilization protein EutQ	NA	NA	NA	NA	NA
VEE96089.1|1368751_1369852_-	ethanolamine transporter	NA	NA	NA	NA	NA
VEE96091.1|1369864_1370128_-	ethanolamine utilization protein	NA	NA	NA	NA	NA
VEE96093.1|1370140_1370740_-	ethanolamine utilization protein	NA	NA	NA	NA	NA
VEE96095.1|1370754_1371381_-	propanediol utilization protein PduL	NA	NA	NA	NA	NA
VEE96097.1|1371393_1371963_-	Ethanolamine utilization cobalamin adenosyltransferase	NA	NA	NA	NA	NA
VEE96099.1|1372030_1372321_-	microcompartment protein	NA	NA	NA	NA	NA
VEE96101.1|1372444_1373923_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
VEE96103.1|1373913_1374432_-	ethanolamine utilization protein	NA	NA	NA	NA	NA
VEE96105.1|1374445_1375099_-	ethanolamine utilization protein EutL	NA	NA	NA	NA	NA
VEE96107.1|1375112_1376024_-	ethanolamine ammonia-lyase small subunit	NA	NA	NA	NA	NA
VEE96109.1|1376041_1377406_-	ethanolamine ammonia-lyase large subunit	NA	NA	NA	NA	NA
VEE96111.1|1377423_1378848_-	reactivating factor for ethanolamine ammonia lyase	NA	NA	NA	NA	NA
VEE96113.1|1378938_1380372_-	sensor histidine kinase	NA	NA	NA	NA	NA
VEE96115.1|1380372_1380954_-	two-component response regulator	NA	NA	NA	NA	NA
1380399:1380414	attL	CTGCAATTTCACTCAT	NA	NA	NA	NA
VEE96117.1|1380972_1381320_-	propanediol utilization protein PduU	NA	NA	NA	NA	NA
VEE96119.1|1381479_1382610_-	PduQ protein	NA	NA	NA	NA	NA
VEE96121.1|1383096_1383678_-	ATP:cob(I)alamin adenosyltransferase	NA	NA	NA	NA	NA
VEE96123.1|1383674_1384118_-	propanediol utilization protein	NA	NA	NA	NA	NA
VEE96125.1|1384259_1385027_-	ferrichrome ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	27.6	2.2e-13
VEE96127.1|1385023_1386031_-	Fe3+-siderophore ABC transporter permease	NA	NA	NA	NA	NA
VEE96129.1|1386023_1386983_-	Hemin-binding periplasmic protein hmuT precursor	NA	NA	NA	NA	NA
VEE96131.1|1387535_1388165_+	putative glycerol-3-phosphate aceyltransferase	NA	NA	NA	NA	NA
VEE96133.1|1388206_1389082_-	aldose 1-epimerase	NA	NA	NA	NA	NA
VEE96135.1|1389115_1389898_-	transcriptional repressor CodY	NA	NA	NA	NA	NA
VEE96137.1|1389918_1391322_-|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	A0A191ZC11	Erwinia_phage	29.7	7.5e-44
VEE96139.1|1391336_1391885_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
VEE96141.1|1391913_1392813_-|integrase	integrase family protein	integrase	A0A0K2CP59	Brevibacillus_phage	31.2	6.3e-36
VEE96143.1|1393024_1394332_-	glucose inhibited division protein	NA	NA	NA	NA	NA
VEE96145.1|1394439_1396518_-	DNA topoisomerase I	NA	A0A1V0SCS0	Indivirus	35.8	3.8e-100
VEE96147.1|1396702_1397356_-|protease	Membrane-bound protease, CAAX family	protease	NA	NA	NA	NA
1404963:1404978	attR	CTGCAATTTCACTCAT	NA	NA	NA	NA
>prophage 3
LR134312	Enterococcus faecalis strain NCTC8745 genome assembly, chromosome: 1	2719199	1517126	1525770	2719199		Synechococcus_phage(50.0%)	9	NA	NA
VEE96389.1|1517126_1517699_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.1	4.1e-25
VEE96391.1|1517695_1518727_-	phosphoribosylaminoimidazole synthetase	NA	A0A1D8KMR0	Synechococcus_phage	45.2	2.2e-56
VEE96393.1|1518728_1520168_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.1	6.1e-49
VEE96395.1|1520143_1522363_-	phosphoribosylformylglycinamidine synthase protein	NA	A6N228	Microbacterium_phage	39.9	1.3e-146
VEE96397.1|1522359_1523034_-	phosphoribosylformylglycinamidine synthase	NA	NA	NA	NA	NA
VEE96399.1|1523034_1523286_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
VEE96401.1|1523299_1524013_-	phosphoribosylaminoimidazole-succinocarboxamide synthase	NA	A0A0E3ELR0	Synechococcus_phage	43.0	4.3e-48
VEE96403.1|1524164_1525289_-	phosphoribosylaminoimidazole carboxylase II	NA	NA	NA	NA	NA
VEE96405.1|1525281_1525770_-	phosphoribosylaminoimidazole carboxylase, catalytic subunit	NA	A0A2P0VNU7	Tetraselmis_virus	42.7	1.3e-19
>prophage 4
LR134312	Enterococcus faecalis strain NCTC8745 genome assembly, chromosome: 1	2719199	2225162	2234902	2719199		Streptococcus_phage(57.14%)	11	NA	NA
VEE97600.1|2225162_2227346_+	anaerobic ribonucleoside triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	66.8	3.1e-286
VEE97602.1|2227378_2227975_+	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A0C5K925	Enterococcus_phage	56.4	6.0e-51
VEE97604.1|2228019_2229138_-	DNA polymerase IV	NA	NA	NA	NA	NA
VEE97606.1|2229263_2230022_-	YbbM seven transmembrane helix protein	NA	NA	NA	NA	NA
VEE97608.1|2230005_2230668_-	YbbL ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.1	6.7e-19
VEE97610.1|2230682_2231555_-	putative S-adenosyl-methionine-dependent methyl transferase, YraL family	NA	M1PLC5	Streptococcus_phage	57.6	6.2e-81
VEE97612.1|2231666_2232014_-	regulator of replication initiation timing	NA	M1PFV3	Streptococcus_phage	36.7	8.1e-16
VEE97614.1|2232006_2232846_-	signal peptidase II	NA	NA	NA	NA	NA
VEE97616.1|2232962_2233913_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	33.0	6.2e-34
VEE97618.1|2233914_2234244_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VEE97620.1|2234263_2234902_-	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	53.8	2.1e-54
