The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR134314	Streptococcus pyogenes strain NCTC8302 genome assembly, chromosome: 1	1834173	87699	159025	1834173	tRNA,head,protease,transposase	Streptococcus_phage(20.0%)	66	NA	NA
VEF01119.1|87699_89910_-	phosphoglycerol transferase	NA	W6LM83	Streptococcus_phage	68.9	6.5e-268
VEF01122.1|90017_91181_+	SAM-dependent methyltransferase	NA	W6LLI2	Streptococcus_phage	64.9	1.3e-142
VEF01125.1|91177_91864_+	3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	68.9	7.0e-88
VEF01128.1|91957_93124_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.8	5.8e-34
VEF01131.1|93184_93526_+	hypothetical cytosolic protein	NA	A0A1X9I5Y8	Streptococcus_phage	40.2	5.9e-19
VEF01134.1|93746_95099_+	glutathione reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	24.0	1.0e-29
VEF01137.1|95186_96455_-	folylpolyglutamate synthase	NA	NA	NA	NA	NA
VEF01140.1|96484_96925_-	membrane protein	NA	NA	NA	NA	NA
VEF01143.1|97159_98302_+	aminotransferase class-V family protein	NA	A0A1X6WFP1	Pacmanvirus	27.3	1.4e-24
VEF01146.1|98313_99528_+	thiamine biosynthesis protein thiI	NA	NA	NA	NA	NA
VEF01149.1|99565_100858_+	metallophosphatase	NA	A0A2H4JC87	uncultured_Caudovirales_phage	30.8	6.5e-34
VEF01152.1|100869_101853_-|transposase	transposase	transposase	H7BW61	unidentified_phage	35.0	2.1e-32
VEF01154.1|102157_102472_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
VEF01156.1|102483_102810_+	hypothetical ribosome-associated protein	NA	NA	NA	NA	NA
VEF01159.1|102837_103131_+	LSU ribosomal protein L27p	NA	NA	NA	NA	NA
VEF01162.1|103278_103389_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEF01165.1|103489_104404_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
VEF01167.1|104400_104859_+	signal peptidase II	NA	NA	NA	NA	NA
VEF01170.1|104860_105739_+	ribosomal large subunit pseudouridine synthase D	NA	A0A2H4UV25	Bodo_saltans_virus	25.3	3.5e-07
VEF01173.1|106134_106656_+	Uracil phosphoribosyltransferase / Pyrimidine operon regulatory protein pyrR	NA	NA	NA	NA	NA
VEF01176.1|106671_107931_+	uracil permease	NA	Q9KX94	Enterobacteria_phage	36.2	3.5e-61
VEF01179.1|107940_108927_+	aspartate carbamoyltransferase catalytic subunit	NA	M1HGA5	Paramecium_bursaria_Chlorella_virus	32.6	3.2e-25
VEF01182.1|108970_110053_+	carbamoyl phosphate synthase small subunit	NA	R4TGJ8	Halovirus	36.9	4.7e-62
VEF01185.1|110298_113475_+	carbamoyl-phosphate synthase large chain	NA	NA	NA	NA	NA
VEF01188.1|113681_114953_+	RND family efflux transporter MFP subunit	NA	NA	NA	NA	NA
VEF01191.1|114952_115663_+	bacitracin ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.5	1.7e-36
VEF01194.1|115674_116895_+	permease family protein	NA	NA	NA	NA	NA
VEF01197.1|117148_118882_+	glycerophosphodiester phosphodiesterase	NA	NA	NA	NA	NA
VEF01201.1|119008_119281_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
VEF01204.1|119290_119530_+	RNA binding protein	NA	NA	NA	NA	NA
VEF01207.1|120461_123488_+	LPXTG-motif cell wall anchor domain protein	NA	NA	NA	NA	NA
VEF01210.1|123507_123909_+	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
VEF01212.1|124088_124964_-	cation diffusion facilitator transporter family protein	NA	NA	NA	NA	NA
VEF01215.1|125099_125621_+	transcriptional regulator, TetR family	NA	NA	NA	NA	NA
VEF01218.1|125835_126354_+	16S rRNA-processing protein	NA	NA	NA	NA	NA
VEF01225.1|126343_127063_+|tRNA	tRNA (guanine-N(1)-)-methyltransferase	tRNA	NA	NA	NA	NA
VEF01228.1|127074_128067_+	thioredoxin reductase	NA	Q9JRK7	Streptococcus_phage	54.9	8.2e-29
VEF01231.1|128244_129303_+	regulatory protein	NA	NA	NA	NA	NA
VEF01234.1|129315_130239_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
VEF01237.1|130539_131208_+	deoR-like helix-turn-helix domain-containing protein	NA	A0A077SK06	Escherichia_phage	32.2	6.3e-17
VEF01240.1|131204_132116_+	1-phosphofructokinase	NA	NA	NA	NA	NA
VEF01243.1|132112_134059_+	PTS system fructose-specific transporter subunit IIABC	NA	NA	NA	NA	NA
VEF01246.1|134157_134751_+	N-acetylmuramidase	NA	A0A249Y0X5	Enterococcus_phage	33.8	3.5e-11
VEF01249.1|134903_135611_+	mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein	NA	Q332B8	Clostridium_botulinum_C_phage	36.4	1.9e-11
VEF01254.1|135766_135886_-|transposase	degenerate transposase	transposase	NA	NA	NA	NA
VEF01257.1|136567_137581_-|protease	igG-degrading protease	protease	NA	NA	NA	NA
VEF01260.1|138084_138261_+	nucleoside diphosphate kinase	NA	NA	NA	NA	NA
VEF01263.1|138489_138870_+|transposase	transposase	transposase	NA	NA	NA	NA
VEF01266.1|138869_139718_+	degV family protein	NA	NA	NA	NA	NA
VEF01269.1|139842_141051_+|head	poly A polymerase head domain-containing protein	head	H7BUW3	unidentified_phage	45.0	6.9e-38
VEF01272.1|141047_142925_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	31.5	1.5e-63
VEF01275.1|143816_144227_+	polypeptide deformylase family protein	NA	E3SLL2	Synechococcus_phage	30.6	6.9e-06
VEF01278.1|144307_146320_-	5'-nucleotidase	NA	NA	NA	NA	NA
VEF01280.1|146539_147190_+	GTP pyrophosphokinase	NA	NA	NA	NA	NA
VEF01283.1|147192_147861_+	two-component response regulator	NA	W8CYM9	Bacillus_phage	28.8	2.3e-19
VEF01286.1|147869_149102_+	two component system histidine kinase	NA	NA	NA	NA	NA
VEF01289.1|149395_150274_+	mevalonate kinase	NA	NA	NA	NA	NA
VEF01292.1|150255_151200_+	diphosphomevalonate decarboxylase	NA	NA	NA	NA	NA
VEF01295.1|151192_152206_+	phosphomevalonate kinase	NA	NA	NA	NA	NA
VEF01298.1|152192_153182_+	isopentenyl pyrophosphate isomerase	NA	NA	NA	NA	NA
VEF01301.1|153411_154689_-	hydroxymethylglutaryl-CoA reductase, degradative	NA	NA	NA	NA	NA
VEF01304.1|154675_155851_-	hydroxymethylglutaryl-CoA synthase	NA	NA	NA	NA	NA
VEF01307.1|156059_156899_+	thymidylate synthase	NA	U5J9N5	Bacillus_phage	53.2	1.7e-83
VEF01310.1|156978_157476_+	dihydrofolate reductase	NA	W5QU76	Bacillus_phage	34.4	1.1e-10
VEF01313.1|157495_157666_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
VEF01316.1|157795_159025_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	60.5	1.7e-137
>prophage 2
LR134314	Streptococcus pyogenes strain NCTC8302 genome assembly, chromosome: 1	1834173	186342	194294	1834173	transposase	Streptococcus_phage(66.67%)	10	NA	NA
VEF01391.1|186342_187347_+|transposase	transposase	transposase	A0A1B1P773	Bacillus_phage	50.8	2.6e-62
VEF01394.1|187451_188228_-	Domain of uncharacterised function DUF1828	NA	NA	NA	NA	NA
VEF01397.1|188253_188724_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEF01400.1|188783_189527_-	Phage transcriptional repressor	NA	J7KJ52	Streptococcus_phage	58.3	1.1e-70
VEF01403.1|189873_190665_-	phage protein	NA	A0A1S5SAN8	Streptococcus_phage	36.8	3.6e-35
VEF01406.1|190720_190972_+	phage protein	NA	A0A141E1R7	Streptococcus_phage	50.7	3.3e-11
VEF01415.1|190958_191216_-	Uncharacterised protein	NA	M1PRU3	Streptococcus_phage	61.1	2.4e-09
VEF01424.1|191522_191819_+	enterotoxin	NA	NA	NA	NA	NA
VEF01429.1|191842_191974_+	exotoxin H precursor	NA	NA	NA	NA	NA
VEF01432.1|193538_194294_-	SpeA variant	NA	A0A097PAT7	Streptococcus_pyogenes_phage	89.2	2.9e-127
>prophage 3
LR134314	Streptococcus pyogenes strain NCTC8302 genome assembly, chromosome: 1	1834173	274578	339083	1834173	tRNA,transposase	Streptococcus_phage(23.08%)	59	NA	NA
VEF01655.1|274578_275934_+|tRNA	tRNA (uracil-5-)-methyltransferase	tRNA	D0R096	Streptococcus_phage	98.2	8.0e-253
VEF01657.1|275972_276083_+	phosphorylase Pnp/Udp family protein	NA	NA	NA	NA	NA
VEF01660.1|276226_276739_+	phosphorylase superfamily protein	NA	F5CA76	Streptococcus_phi-m46.1-like_phage	96.5	6.6e-91
VEF01663.1|276823_277225_+	phenylacetic acid degradation protein PaaI	NA	NA	NA	NA	NA
VEF01666.1|277329_278814_-	hypothetical cytosolic protein	NA	NA	NA	NA	NA
VEF01669.1|279187_280408_+	sugar (and other) transporter family protein	NA	NA	NA	NA	NA
VEF01672.1|280527_280893_-	thioesterase superfamily protein	NA	NA	NA	NA	NA
VEF01675.1|281007_281739_+	16S pseudouridylate synthase	NA	NA	NA	NA	NA
VEF01678.1|282112_282226_-	Transposase	NA	NA	NA	NA	NA
VEF01681.1|282303_283614_-	membrane protein	NA	NA	NA	NA	NA
VEF01684.1|283837_284710_+	nicotinate-nucleotide pyrophosphorylase	NA	NA	NA	NA	NA
VEF01686.1|284972_285785_-|transposase	transposase	transposase	A0A1B1P773	Bacillus_phage	48.4	1.1e-58
VEF01688.1|285805_286321_-|transposase	transposase	transposase	NA	NA	NA	NA
VEF01690.1|286562_286691_+	membrane protein	NA	NA	NA	NA	NA
VEF01692.1|286747_288061_+	GTPase ObgE	NA	NA	NA	NA	NA
VEF01694.1|288129_288288_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
VEF01696.1|288292_288988_-	nicotinamide mononucleotide transporter	NA	NA	NA	NA	NA
VEF01698.1|289212_290613_+	beta-glucosidase	NA	NA	NA	NA	NA
VEF01700.1|290621_291716_+	outer surface protein	NA	NA	NA	NA	NA
VEF01702.1|291821_293816_+	PTS system mannitol (cryptic)-specific transporter subunit IIA	NA	NA	NA	NA	NA
VEF01704.1|293838_294150_+	PTS system cellobiose-specific component IIB	NA	NA	NA	NA	NA
VEF01707.1|294152_294488_+	PTS system cellobiose-specific transporter subunit IIA	NA	NA	NA	NA	NA
VEF01709.1|294484_294919_+	Domain of uncharacterised function (DUF3284)	NA	NA	NA	NA	NA
VEF01711.1|295111_296491_+	PTS system cellobiose-specific transporter subunit IIC	NA	NA	NA	NA	NA
VEF01713.1|296487_296640_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEF01715.1|296787_297528_-	glutamine transport ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	42.1	1.2e-35
VEF01717.1|297527_299702_-	glutamine-binding protein/glutamine transpor tsystem permease protein	NA	NA	NA	NA	NA
VEF01719.1|299893_301885_+	excinuclease ABC subunit B	NA	NA	NA	NA	NA
VEF01721.1|302147_302291_+	D-alanyl-lipoteichoic acid biosynthesis protein DltX	NA	NA	NA	NA	NA
VEF01723.1|302302_303841_+	D-alanine--poly(phosphoribitol) ligase subunit 1	NA	A0A2K9KZV5	Tupanvirus	28.2	6.5e-41
VEF01725.1|303837_305094_+	Protein dltB	NA	NA	NA	NA	NA
VEF01727.1|305111_305351_+	D-alanine-poly(phosphoribitol) ligase subunit 2	NA	NA	NA	NA	NA
VEF01729.1|305343_306594_+	D-alanine transfer from undecaprenol-phosphate to the poly(Glycerophosphate) chain	NA	NA	NA	NA	NA
VEF01731.1|306624_307608_+	alpha/beta fold family hydrolase	NA	NA	NA	NA	NA
VEF01733.1|308122_308710_-|transposase	truncated transposase	transposase	Q9MBM9	Staphylococcus_prophage	40.8	4.1e-28
VEF01735.1|308651_308903_-|transposase	transposase	transposase	NA	NA	NA	NA
VEF01737.1|309083_309920_-	maltose transport system permease	NA	NA	NA	NA	NA
VEF01739.1|309919_311281_-	maltose/maltodextrin ABC transport system permease	NA	NA	NA	NA	NA
VEF01741.1|311554_312802_-	maltose/maltodextrin-binding protein	NA	NA	NA	NA	NA
VEF01743.1|313045_314065_+	LacI family transcription regulator	NA	C6ZCU4	Enterobacteria_phage	27.7	4.3e-17
VEF01745.1|314178_315672_+	4-alpha-glucanotransferase	NA	NA	NA	NA	NA
VEF01747.1|315706_317971_+	glycogen phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	43.7	1.2e-11
VEF01749.1|318227_318848_-	phage protein	NA	NA	NA	NA	NA
VEF01751.1|319587_320202_+	membrane protein	NA	M1Q152	Streptococcus_phage	52.3	6.2e-51
VEF01753.1|320328_321114_-	ABC transporter permease protein	NA	NA	NA	NA	NA
VEF01755.1|321123_321822_-	ABC transporter family protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	27.3	6.6e-09
VEF01757.1|321821_322193_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
VEF01759.1|322377_325488_+	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	29.9	6.4e-120
VEF01761.1|325567_326581_+	6-phosphofructokinase	NA	NA	NA	NA	NA
VEF01763.1|326643_328146_+	pyruvate kinase	NA	NA	NA	NA	NA
VEF01765.1|328275_328833_+	Signal peptidase I	NA	NA	NA	NA	NA
VEF01767.1|328845_330294_-	Phage-associated cell wall hydrolase	NA	A0A1X9I5T2	Streptococcus_phage	91.7	1.6e-254
VEF01769.1|330565_332380_+	glutamine-fructose-6-phosphate transaminase (isomerizing)	NA	A0A1J0F994	Only_Syngen_Nebraska_virus	37.5	7.3e-100
VEF01771.1|332502_334269_+	PTS system, mannitol-specific IIBC component	NA	NA	NA	NA	NA
VEF01773.1|334276_336247_+	Mannitol operon activator	NA	NA	NA	NA	NA
VEF01775.1|336248_336686_+	PTS system, mannitol-specific IIA component, MtlA	NA	NA	NA	NA	NA
VEF01777.1|336713_337862_+	Mannitol-1-phosphate 5-dehydrogenase, MtlD	NA	NA	NA	NA	NA
VEF01779.1|338014_338311_+|transposase	transposase	transposase	NA	NA	NA	NA
VEF01781.1|338294_339083_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 4
LR134314	Streptococcus pyogenes strain NCTC8302 genome assembly, chromosome: 1	1834173	517709	609413	1834173	holin,tRNA,transposase,protease,tail,terminase,head,integrase	Streptococcus_phage(56.92%)	110	572083:572102	606798:606817
VEF02135.1|517709_517928_+	glutaredoxin	NA	A0A249XUR7	Enterococcus_phage	49.3	1.1e-13
VEF02137.1|517947_520107_+	ribonucleotide-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	63.9	5.6e-264
VEF02139.1|520310_521270_+	ribonucleoside-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	70.2	1.8e-126
VEF02141.1|521244_522558_+	chloride channel protein	NA	NA	NA	NA	NA
VEF02143.1|522695_522989_+|transposase	transposase	transposase	NA	NA	NA	NA
VEF02145.1|523021_523375_+	DNA-binding protein	NA	A0A0C5AEB1	Paenibacillus_phage	30.8	4.5e-06
VEF02147.1|523420_523591_+|integrase	integrase	integrase	A0A1P8CWQ3	Bacillus_phage	46.3	2.6e-07
VEF02149.1|523630_523846_+	Transposase	NA	U5P429	Shigella_phage	43.9	2.0e-09
VEF02151.1|523942_524638_-|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
VEF02153.1|524656_525418_-	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
VEF02156.1|525414_525636_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
VEF02158.1|525670_525805_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEF02160.1|525990_528609_-|tRNA	Alanyl-tRNA synthetase	tRNA	A0A1V0SK38	Klosneuvirus	34.3	4.6e-63
VEF02163.1|528995_530051_-	foldase protein prsA 1	NA	NA	NA	NA	NA
VEF02165.1|530113_530785_-	O-methyltransferase	NA	A0A2P1JQT7	Mycobacterium_phage	27.2	2.4e-08
VEF02167.1|530886_532083_-	major facilitator superfamily protein	NA	NA	NA	NA	NA
VEF02169.1|532458_534264_-	oligoendopeptidase F	NA	NA	NA	NA	NA
VEF02171.1|534276_535239_-	competence CoiA-like family protein	NA	NA	NA	NA	NA
VEF02173.1|535534_536251_-	16S pseudouridylate synthetase	NA	NA	NA	NA	NA
VEF02175.1|536369_537074_-	glucosamine-6-phosphate deaminase	NA	NA	NA	NA	NA
VEF02177.1|537275_538304_+|tRNA	S-adenosylmethionine-tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
VEF02179.1|538343_539531_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
VEF02181.1|539644_540235_-	S11 family peptidase	NA	NA	NA	NA	NA
VEF02183.1|540231_540471_-	lipoprotein	NA	NA	NA	NA	NA
VEF02185.1|540526_540673_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEF02187.1|540839_541445_-	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	53.2	2.3e-58
VEF02189.1|541541_542582_-	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
VEF02192.1|542662_543217_-	ComE operon protein 3	NA	M1PSD2	Streptococcus_phage	59.2	3.4e-56
VEF02194.1|543274_543733_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEF02196.1|543988_544456_-	site-specific recombinase	NA	Q6DMS5	Streptococcus_phage	86.3	1.4e-66
VEF02198.1|544621_545023_-	Zinc-finger protein	NA	NA	NA	NA	NA
VEF02200.1|545283_549579_-	LPXTG anchored adhesin	NA	NA	NA	NA	NA
VEF02202.1|549998_550589_+|transposase	transposase	transposase	NA	NA	NA	NA
VEF02204.1|550390_551965_-	competence protein ComE	NA	NA	NA	NA	NA
VEF02206.1|551945_552608_-	comE operon 1 domain-containing protein	NA	NA	NA	NA	NA
VEF02208.1|552806_553547_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
VEF02210.1|553586_554441_+	methyltransferase	NA	NA	NA	NA	NA
VEF02212.1|554430_554709_+	GIY-YIG catalytic domain-containing protein	NA	W8W2G4	Invertebrate_iridovirus	36.0	7.9e-06
VEF02214.1|554732_556733_-	Kup system potassium uptake protein	NA	M1IBC2	Acanthocystis_turfacea_Chlorella_virus	34.0	1.3e-65
VEF02216.1|556860_558480_-	DEAD-box ATP-dependent RNA helicase CshA	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	36.5	2.5e-59
VEF02218.1|558786_560331_-	peptide chain release factor 3	NA	A0A1B0RXH7	Streptococcus_phage	29.1	1.1e-35
VEF02219.1|560578_561274_-	integral membrane family protein	NA	NA	NA	NA	NA
VEF02221.1|561353_562745_-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA	NA
VEF02223.1|562943_563990_-	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
VEF02225.1|564090_564687_-	recombination protein	NA	NA	NA	NA	NA
VEF02227.1|565475_566255_-	formate transporter	NA	NA	NA	NA	NA
VEF02229.1|566378_566921_-	membrane protein	NA	NA	NA	NA	NA
VEF02231.1|567081_567603_-	3H domain-containing protein	NA	NA	NA	NA	NA
VEF02233.1|567709_568405_-	phosphoglyceromutase	NA	NA	NA	NA	NA
VEF02235.1|568643_569579_+	dihydroorotate dehydrogenase 1A	NA	A0A1V0SH91	Hokovirus	44.8	1.3e-65
VEF02237.1|569878_571741_-	putative heavy metal-transporting ATPase	NA	E4ZFI9	Streptococcus_phage	33.8	5.4e-90
572083:572102	attL	AATTATTTAACAGCGTCTTT	NA	NA	NA	NA
VEF02239.1|572271_572454_-	paratox	NA	A3F673	Streptococcus_phage	81.7	2.0e-21
VEF02241.1|572693_573452_+	DNA/RNA non-specific endonuclease family protein	NA	NA	NA	NA	NA
VEF02243.1|573562_574270_+	exotoxin type C	NA	A0A097PAT7	Streptococcus_pyogenes_phage	27.1	3.9e-09
VEF02245.1|574338_575091_-	phage-associated cell wall hydrolase	NA	A3F665	Streptococcus_phage	96.4	3.9e-140
VEF02247.1|575096_575207_-	putative phage membrane protein	NA	NA	NA	NA	NA
VEF02249.1|575208_575664_-|holin	holin	holin	A0A0M4R3G6	Streptococcus_phage	81.5	2.3e-63
VEF02251.1|575673_576285_-	phage protein	NA	Q938J7	Temperate_phage	88.7	4.1e-79
VEF02253.1|576287_576716_-	phage protein	NA	A3F661	Streptococcus_phage	92.9	2.8e-66
VEF02255.1|576724_578506_-	gp58-like family protein	NA	Q938J9	Temperate_phage	41.7	3.4e-73
VEF02257.1|578520_579630_-	hyaluronoglucosaminidase	NA	Q938K0	Temperate_phage	66.7	5.6e-127
VEF02259.1|579629_581588_-	phage endopeptidase	NA	M1PKG3	Streptococcus_phage	48.7	3.4e-95
VEF02261.1|581584_582280_-	phage protein	NA	A0A1B1P761	Bacillus_phage	32.2	4.7e-07
VEF02263.1|582276_584640_-|tail	minor tail protein GP26	tail	M1NRG5	Streptococcus_phage	50.2	2.1e-131
VEF02265.1|584639_585011_-	phage protein	NA	M1PL84	Streptococcus_phage	62.4	1.7e-35
VEF02267.1|585025_585289_-	phage protein	NA	A0A0B5A2F3	Streptococcus_phage	55.8	1.0e-18
VEF02269.1|585299_585890_-|tail	major tail protein	tail	M1PKG8	Streptococcus_phage	62.5	1.1e-60
VEF02271.1|585905_586241_-	phage protein	NA	A0A1P8BMR5	Lactococcus_phage	64.9	9.8e-35
VEF02273.1|586241_586478_-	phage protein	NA	A0A1P8BMT2	Lactococcus_phage	66.7	2.5e-21
VEF02275.1|586470_586809_-	phage protein	NA	A0A0B5A086	Streptococcus_phage	75.0	8.1e-45
VEF02277.1|586768_587191_-	phage Gp19/Gp15/Gp42 family protein	NA	A0A0B5A2F6	Streptococcus_phage	67.2	8.2e-47
VEF02279.1|587200_587401_-	phage protein	NA	NA	NA	NA	NA
VEF02281.1|587400_588312_-|head	phage, major head protein	head	M1PFL0	Streptococcus_phage	67.0	2.9e-113
VEF02283.1|588336_588798_-	phage protein	NA	M1Q1L0	Streptococcus_phage	53.2	4.5e-38
VEF02285.1|588878_590294_-|terminase	phage terminase	terminase	A0A0B5A091	Streptococcus_phage	74.0	1.5e-212
VEF02287.1|590375_590591_-	phage protein	NA	M1IRA5	Streptococcus_phage	72.4	4.1e-26
VEF02289.1|590592_590859_-	secreted phage protein	NA	Q938K9	Temperate_phage	95.5	6.4e-37
VEF02291.1|590851_591004_-	phage protein	NA	NA	NA	NA	NA
VEF02293.1|591080_591305_-	phage protein	NA	NA	NA	NA	NA
VEF02295.1|591310_592804_-	phage protein	NA	M1Q184	Streptococcus_phage	55.0	2.0e-87
VEF02297.1|592796_594065_-	structural phage protein	NA	M1PFL4	Streptococcus_phage	75.6	2.2e-188
VEF02299.1|594061_594418_-	phage protein	NA	M1PRL3	Streptococcus_phage	57.8	2.4e-07
VEF02301.1|595017_595437_-	phage protein	NA	A0A1X9I5B5	Streptococcus_phage	79.1	1.9e-56
VEF02303.1|595512_595764_-	phage protein	NA	M1PF60	Streptococcus_phage	59.0	1.6e-18
VEF02305.1|595760_595916_-	phage protein	NA	NA	NA	NA	NA
VEF02307.1|595912_596230_-	phage protein	NA	A1EAD7	Streptococcus_phage	71.4	9.0e-30
VEF02309.1|596265_596778_-	lactococcus phage M3 family protein	NA	M1PFM2	Streptococcus_phage	85.9	1.7e-78
VEF02311.1|596774_597107_-	phage protein	NA	M1NS23	Streptococcus_phage	67.0	8.8e-36
VEF02313.1|597117_598464_-	PcfJ	NA	A8ATM0	Listeria_phage	49.4	1.0e-122
VEF02315.1|598460_598856_-	phage protein	NA	A8ATL9	Listeria_phage	52.3	1.4e-19
VEF02317.1|599006_599099_-	phage protein	NA	A0A1S5SCN4	Streptococcus_phage	70.0	3.7e-05
VEF02319.1|599220_600018_-	phage protein	NA	J7KGZ1	Streptococcus_phage	83.8	1.3e-130
VEF02321.1|600010_600211_-	phage protein	NA	NA	NA	NA	NA
VEF02323.1|600207_601134_-	recombinase, phage RecT family protein	NA	M1NRN6	Streptococcus_phage	71.8	1.2e-90
VEF02325.1|601136_601466_-	phage protein	NA	J7KGX3	Streptococcus_phage	82.6	3.5e-45
VEF02327.1|601521_601728_-	phage protein	NA	NA	NA	NA	NA
VEF02329.1|601736_601877_-	phage protein	NA	A0A1X9I6Y1	Streptococcus_phage	54.5	3.4e-05
VEF02331.1|601873_602107_-	phage protein	NA	Q938N1	Temperate_phage	94.8	1.8e-35
VEF02333.1|602087_602474_-	phage DNA replication protein	NA	Q938N2	Temperate_phage	47.3	1.1e-24
VEF02335.1|602977_603163_-	phage protein	NA	Q938N3	Temperate_phage	83.6	1.3e-20
VEF02337.1|603164_603476_-	excisionase	NA	A0A1S5SA25	Streptococcus_phage	77.7	5.3e-43
VEF02339.1|603573_603705_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEF02341.1|603745_603958_-	helix-turn-helix family protein	NA	A0A1X9I583	Streptococcus_phage	56.7	1.1e-10
VEF02343.1|604159_604915_+	Cro/CI family transcriptional regulator	NA	A0A1S5S8S8	Streptococcus_phage	60.8	2.8e-77
VEF02345.1|604926_605445_+	HIRAN domain protein	NA	E8ZDN5	Streptococcus_phage	45.9	9.2e-32
VEF02347.1|605568_606711_+|integrase	phage integrase family protein	integrase	M1NRJ9	Streptococcus_phage	77.4	2.4e-173
VEF02349.1|606799_607075_-	DNA-binding protein HU 1	NA	A7KV42	Bacillus_phage	73.0	2.6e-25
606798:606817	attR	AATTATTTAACAGCGTCTTT	NA	NA	NA	NA
VEF02351.1|607173_607761_-	membrane protein	NA	NA	NA	NA	NA
VEF02353.1|607738_608599_-	GDSL family lipase	NA	NA	NA	NA	NA
VEF02355.1|608573_609413_-	degV family protein	NA	A0A0N9SI50	Staphylococcus_phage	35.7	7.0e-13
>prophage 5
LR134314	Streptococcus pyogenes strain NCTC8302 genome assembly, chromosome: 1	1834173	671640	747859	1834173	tRNA,tail,terminase,capsid,head,integrase	Temperate_phage(54.1%)	88	697294:697309	762605:762620
VEF02481.1|671640_674289_-|tRNA	valyl-tRNA synthetase	tRNA	A0A1V0S951	Catovirus	40.4	8.6e-150
VEF02483.1|674290_674854_-	shikimate kinase	NA	NA	NA	NA	NA
VEF02485.1|675455_675851_-	hypothetical cytosolic protein	NA	NA	NA	NA	NA
VEF02487.1|675871_676126_-	Aldose 1-epimerase	NA	NA	NA	NA	NA
VEF02489.1|676603_677356_+	2-dehydro-3-deoxyphosphoheptonate aldolase	NA	NA	NA	NA	NA
VEF02491.1|677411_678485_+	3-dehydroquinate synthase	NA	E5ERI4	Ostreococcus_lucimarinus_virus	31.6	7.3e-31
VEF02493.1|678920_679226_-	cupin domain-containing protein	NA	NA	NA	NA	NA
VEF02495.1|679227_679566_-	cupin domain-containing protein	NA	NA	NA	NA	NA
VEF02497.1|679618_680374_-	ubiE/COQ5 methyltransferase family protein	NA	NA	NA	NA	NA
VEF02499.1|680625_681504_-	shikimate 5-dehydrogenase	NA	NA	NA	NA	NA
VEF02501.1|681641_685058_-	beta-galactosidase	NA	NA	NA	NA	NA
VEF02503.1|685077_686562_-	two-component response regulator	NA	NA	NA	NA	NA
VEF02505.1|686561_688286_-	ATPase	NA	Q9EYF3	Enterobacteria_phage	24.9	4.5e-14
VEF02507.1|688275_688881_-	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
VEF02509.1|689186_690632_-	sugar-binding protein	NA	NA	NA	NA	NA
VEF02511.1|690712_691639_-	Protein lplC	NA	NA	NA	NA	NA
VEF02513.1|691648_692599_-	sugar transport system permease	NA	NA	NA	NA	NA
VEF02515.1|692815_693694_+	N-acetylmannosamine kinase	NA	NA	NA	NA	NA
VEF02517.1|694304_695747_-	6-phospho-beta-glucosidase gmuD	NA	NA	NA	NA	NA
VEF02519.1|695772_697467_-	hyaluronoglucosaminidase	NA	NA	NA	NA	NA
697294:697309	attL	TTCTTCAATCCACTGA	NA	NA	NA	NA
VEF02521.1|697517_698558_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
VEF02523.1|698690_699977_+	glycosyl hydrolase	NA	NA	NA	NA	NA
VEF02525.1|699991_702697_+	alpha-mannosidase	NA	NA	NA	NA	NA
VEF02527.1|702901_704152_-	histidine kinase	NA	NA	NA	NA	NA
VEF02529.1|704817_706173_-	RNA methyltransferase	NA	A0A2K5B251	Erysipelothrix_phage	33.0	2.0e-73
VEF02531.1|706363_706546_-	phage protein	NA	A3F673	Streptococcus_phage	81.7	1.7e-20
VEF02533.1|706785_707784_+	Sda	NA	A7J2B8	Streptococcus_phage	53.5	4.5e-83
VEF02535.1|707924_708518_-	phage protein	NA	A0A0A8WFI2	Clostridium_phage	38.2	2.4e-23
VEF02537.1|708517_708682_-	phage protein	NA	NA	NA	NA	NA
VEF02539.1|708830_710036_-	N-acetylmuramoyl-L-alanine amidase	NA	A7J2B5	Streptococcus_phage	83.3	4.7e-204
VEF02541.1|710023_710146_-	phage membrane protein	NA	NA	NA	NA	NA
VEF02543.1|710148_710334_-	phage protein	NA	Q938J5	Temperate_phage	98.4	6.6e-25
VEF02545.1|710330_710630_-	phage protein	NA	Q938J6	Temperate_phage	92.7	4.3e-42
VEF02547.1|710640_711258_-	phage protein	NA	Q938J7	Temperate_phage	88.3	4.5e-78
VEF02549.1|711260_711689_-	phage protein	NA	Q938J8	Temperate_phage	77.9	1.2e-53
VEF02551.1|711700_713716_-	Phage infection protein	NA	Q938J9	Temperate_phage	72.5	1.0e-171
VEF02553.1|713730_714843_-	hyaluronoglucosaminidase	NA	A7J2A8	Streptococcus_phage	64.6	1.8e-104
VEF02555.1|714842_716990_-	Phage endopeptidase	NA	Q938K1	Temperate_phage	94.0	0.0e+00
VEF02557.1|716986_717703_-	phage protein	NA	Q938K2	Temperate_phage	99.2	5.5e-136
VEF02559.1|717699_720960_-	phage protein	NA	Q938K3	Temperate_phage	99.2	0.0e+00
VEF02561.1|720949_721531_-	bacteriophage Gp15 family protein	NA	Q938K4	Temperate_phage	92.2	2.9e-98
VEF02563.1|721534_721969_-	phage protein	NA	Q938K5	Temperate_phage	97.2	1.8e-68
VEF02565.1|722012_722474_-|tail	tail shaft protein	tail	Q938K6	Temperate_phage	78.8	1.9e-60
VEF02567.1|722473_722872_-|capsid	minor capsid protein	capsid	Q79S87	Temperate_phage	99.2	1.3e-70
VEF02569.1|722868_723225_-	phage protein	NA	Q79S88	Temperate_phage	100.0	4.5e-62
VEF02571.1|723224_723584_-|capsid	minor capsid protein - phage associated	capsid	Q79S86	Temperate_phage	100.0	1.0e-58
VEF02573.1|723546_723963_-	phage protein	NA	Q938K7	Temperate_phage	99.1	4.3e-56
VEF02575.1|724016_724835_-|head	putative major head protein	head	Q79S85	Temperate_phage	100.0	4.0e-146
VEF02577.1|724838_725447_-	phage protein	NA	Q938K8	Temperate_phage	95.0	4.0e-95
VEF02579.1|725578_725845_-	secreted phage protein	NA	Q938K9	Temperate_phage	95.5	8.3e-37
VEF02581.1|725931_726159_-	phage protein	NA	NA	NA	NA	NA
VEF02583.1|726158_727652_-|capsid	phage minor capsid 2 family protein	capsid	Q938L1	Temperate_phage	80.6	1.1e-213
VEF02585.1|727656_729159_-|capsid	Minor capsid protein	capsid	Q938L2	Temperate_phage	96.8	1.4e-274
VEF02587.1|729172_730384_-|terminase	phage terminase	terminase	Q938L3	Temperate_phage	98.1	5.0e-222
VEF02589.1|730466_730940_-	phage protein	NA	Q938L4	Temperate_phage	98.1	2.8e-75
VEF02591.1|730990_731368_-	phage transcriptional regulator	NA	Q938L5	Temperate_phage	100.0	1.7e-67
VEF02593.1|731820_732498_-	hypothetical amino acid ABC transporter ATP-binding protein	NA	Q938L6	Temperate_phage	99.6	4.3e-130
VEF02595.1|732476_732995_-	Chromosome partitioning protein parB	NA	Q938L7	Temperate_phage	97.1	1.3e-86
VEF02597.1|733458_733899_-	phage encoded transcriptional regulator, ArpU family	NA	Q938L8	Temperate_phage	98.6	4.2e-78
VEF02599.1|734172_734439_-	phage protein	NA	NA	NA	NA	NA
VEF02601.1|734435_734807_-	phage protein	NA	Q938L9	Temperate_phage	48.0	2.0e-20
VEF02603.1|734927_735560_-	phage protein	NA	L0P368	Streptococcus_phage	68.6	2.3e-85
VEF02605.1|735561_735846_-	phage membrane protein	NA	A0A097PAV1	Streptococcus_pyogenes_phage	87.2	8.9e-37
VEF02607.1|735842_736013_-	phage protein	NA	Q938M0	Temperate_phage	100.0	8.5e-11
VEF02609.1|736009_736414_-	phage protein	NA	Q938M1	Temperate_phage	93.3	9.9e-66
VEF02611.1|736410_736695_-	phage protein	NA	A0A1P8VVP5	Streptococcus_phage	97.9	2.7e-49
VEF02613.1|736688_736940_-	phage protein	NA	A0A1P8VVV4	Streptococcus_phage	92.8	3.4e-40
VEF02615.1|736936_737293_-	phage protein	NA	A0A1P8VVP9	Streptococcus_phage	100.0	5.0e-61
VEF02617.1|737289_737730_-	phage protein	NA	A0A097PAS0	Streptococcus_pyogenes_phage	98.6	1.6e-80
VEF02619.1|737938_738358_-	single-stranded DNA-binding protein ssb	NA	Q938M7	Temperate_phage	99.3	2.1e-71
VEF02621.1|738350_739025_-	Single-stranded DNA-binding protein	NA	Q938M8	Temperate_phage	99.6	9.6e-106
VEF02623.1|739025_739508_-	phage protein	NA	Q938M9	Temperate_phage	100.0	8.2e-51
VEF02625.1|739529_739784_-	phage protein	NA	Q938N0	Temperate_phage	98.8	3.7e-42
VEF02627.1|739764_740121_-	phage protein	NA	A0A097PAU3	Streptococcus_pyogenes_phage	98.3	2.0e-49
VEF02629.1|740131_740269_-	phage protein	NA	J7KBQ4	Streptococcus_phage	78.4	2.7e-07
VEF02631.1|740268_741111_-	phage DNA replication protein	NA	A0A1S5S7L9	Streptococcus_phage	40.7	1.3e-48
VEF02633.1|741120_742041_-	DNA replication protein dnaD	NA	J7KBV5	Streptococcus_phage	86.0	3.7e-116
VEF02635.1|742054_742369_-	Transcriptional regulator, Cro/CI family	NA	A0A1P8VVN6	Streptococcus_phage	94.2	5.9e-50
VEF02637.1|742384_742519_-	phage protein	NA	A0A1P8VVR9	Streptococcus_phage	97.7	3.3e-18
VEF02639.1|742549_742801_-	phage protein	NA	A0A1P8VVV6	Streptococcus_phage	96.4	4.4e-40
VEF02641.1|742900_743113_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEF02643.1|743039_743207_-	phage protein	NA	NA	NA	NA	NA
VEF02645.1|743210_743930_-	phage antirepressor family protein	NA	A0A141E1D3	Streptococcus_phage	69.2	2.8e-87
VEF02647.1|743957_744170_-	phage family protein	NA	J7KBP9	Streptococcus_phage	94.3	3.5e-30
VEF02649.1|744367_744709_+	phage repressor protein	NA	J7KJZ4	Streptococcus_phage	85.8	1.2e-48
VEF02651.1|744692_745079_+	cI-like repressor	NA	A0A1P8VVK5	Streptococcus_phage	77.6	8.3e-54
VEF02653.1|745093_746515_+	phage membrane protein	NA	M1PLF9	Streptococcus_phage	74.5	7.4e-140
VEF02655.1|746692_747859_+|integrase	phage integrase	integrase	C5J953	Streptococcus_phage	42.4	2.4e-80
762605:762620	attR	TTCTTCAATCCACTGA	NA	NA	NA	NA
>prophage 6
LR134314	Streptococcus pyogenes strain NCTC8302 genome assembly, chromosome: 1	1834173	920379	979085	1834173	portal,terminase,tail,transposase	Streptococcus_phage(79.25%)	69	NA	NA
VEF02972.1|920379_921432_+|transposase	transposase	transposase	H7BW61	unidentified_phage	35.0	2.2e-32
VEF02974.1|921393_922347_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
VEF02976.1|922441_923326_-	Fructokinase	NA	NA	NA	NA	NA
VEF02978.1|923589_926589_-	endo-beta-N-acetylglucosaminidase F2 precursor	NA	NA	NA	NA	NA
VEF02980.1|926819_928703_-	PTS system sucrose-specific transporter subunit IIABC	NA	NA	NA	NA	NA
VEF02982.1|928944_930384_+	sucrose-6-phosphate hydrolase	NA	NA	NA	NA	NA
VEF02984.1|930388_931354_+	sucrose operon repressor	NA	C6ZCU4	Enterobacteria_phage	27.7	8.0e-21
VEF02986.1|931494_931947_-	transcription antitermination protein NusB	NA	NA	NA	NA	NA
VEF02988.1|931939_932329_-	Gls24 family general stress protein	NA	NA	NA	NA	NA
VEF02990.1|932374_932932_-	elongation factor P	NA	NA	NA	NA	NA
VEF02992.1|933027_933489_-	ComE operon protein 2	NA	F8WPT6	Bacillus_phage	55.1	1.1e-33
VEF02994.1|933523_934597_-	Xaa-Pro dipeptidase	NA	A0A0P0I8D7	Acinetobacter_phage	32.2	1.7e-16
VEF02996.1|934712_937541_-	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	55.7	1.0e-305
VEF02998.1|937767_937950_-	Paratox	NA	A3F673	Streptococcus_phage	73.3	1.7e-17
VEF03000.1|938269_938368_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEF03002.1|938646_939852_-	N-acetylmuramoyl-L-alanine amidase	NA	A7J2B5	Streptococcus_phage	83.0	5.2e-203
VEF03004.1|939839_939962_-	phage membrane protein	NA	NA	NA	NA	NA
VEF03006.1|939974_940202_-	phage protein	NA	A7J2B3	Streptococcus_phage	97.3	2.2e-30
VEF03008.1|940198_940471_-	phage membrane protein	NA	A7J2B2	Streptococcus_phage	91.0	5.5e-36
VEF03010.1|940482_941121_-	phage protein	NA	A3F662	Streptococcus_phage	52.7	2.0e-44
VEF03012.1|941123_941552_-	phage protein	NA	Q938J8	Temperate_phage	84.3	8.1e-58
VEF03014.1|941563_943468_-	Phage infection protein	NA	Q938J9	Temperate_phage	83.5	6.9e-210
VEF03016.1|943482_944598_-	hyaluronoglucosaminidase	NA	Q938K0	Temperate_phage	74.9	1.6e-142
VEF03019.1|944594_946574_-	phage protein	NA	A7J2A7	Streptococcus_phage	92.8	0.0e+00
VEF03021.1|946583_947426_-	phage protein	NA	A7J2A6	Streptococcus_phage	97.9	8.8e-157
VEF03023.1|947437_951820_-|tail	phage minor tail protein	tail	A7J2A5	Streptococcus_phage	74.2	1.2e-225
VEF03025.1|951834_952068_-	phage protein	NA	A7J2A4	Streptococcus_phage	98.7	1.3e-33
VEF03027.1|952142_952598_-	phage protein	NA	A7J2A3	Streptococcus_phage	99.3	5.3e-76
VEF03029.1|952651_953251_-|tail	phage major tail protein	tail	A7J2A2	Streptococcus_phage	97.1	1.7e-90
VEF03031.1|953262_953622_-	phage protein	NA	A7J2A1	Streptococcus_phage	98.3	1.2e-57
VEF03033.1|953625_953970_-	phage protein	NA	A7J2A0	Streptococcus_phage	98.2	5.1e-55
VEF03035.1|953966_954245_-	phage protein	NA	A7J299	Streptococcus_phage	100.0	1.9e-47
VEF03037.1|954255_954612_-	phage protein	NA	A7J298	Streptococcus_phage	99.2	7.9e-59
VEF03039.1|954623_955511_-	phage protein	NA	A7J297	Streptococcus_phage	100.0	2.1e-161
VEF03041.1|955523_956093_-	phage protein	NA	A7J296	Streptococcus_phage	100.0	1.9e-83
VEF03043.1|956254_956521_-	putative phage associated protein	NA	Q938K9	Temperate_phage	96.6	2.9e-37
VEF03045.1|956525_956642_-	phage membrane protein	NA	A7J294	Streptococcus_phage	100.0	2.0e-08
VEF03047.1|956741_958190_-	phage protein	NA	A7J293	Streptococcus_phage	99.8	1.2e-278
VEF03049.1|958149_959682_-|portal	phage portal protein	portal	A7J292	Streptococcus_phage	99.8	4.5e-292
VEF03051.1|959697_960975_-|terminase	terminase large subunit	terminase	A7J291	Streptococcus_phage	100.0	1.1e-246
VEF03053.1|960964_961417_-|terminase	phage terminase small subunit	terminase	A7J290	Streptococcus_phage	100.0	6.9e-76
VEF03055.1|961506_961923_-	phage protein	NA	A7J289	Streptococcus_phage	99.3	3.3e-72
VEF03057.1|961906_962053_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEF03059.1|962055_962328_-	phage membrane protein	NA	A7J287	Streptococcus_phage	73.3	5.7e-25
VEF03061.1|962320_962491_-	phage protein	NA	A7J285	Streptococcus_phage	94.2	3.1e-21
VEF03063.1|962491_963814_-	SNF2 family phage protein	NA	A7J284	Streptococcus_phage	96.8	1.1e-249
VEF03065.1|963810_964086_-	phage protein	NA	A7J283	Streptococcus_phage	96.7	2.9e-45
VEF03067.1|964471_966856_-	phage DNA primase/helicase protein	NA	A7J282	Streptococcus_phage	94.2	1.6e-275
VEF03069.1|966860_968783_-	phage DNA polymerase	NA	A7J280	Streptococcus_phage	99.1	0.0e+00
VEF03071.1|968825_969383_-	phage protein	NA	D2J040	Enterococcus_phage	58.5	3.3e-51
VEF03073.1|969397_970555_-	phage protein	NA	A7J278	Streptococcus_phage	98.2	1.0e-216
VEF03075.1|970554_970764_-	phage protein	NA	A7J277	Streptococcus_phage	89.7	1.2e-22
VEF03077.1|970735_970855_-	phage protein	NA	A7J277	Streptococcus_phage	97.2	7.7e-11
VEF03079.1|970942_971146_-	phage protein	NA	A7J276	Streptococcus_phage	89.6	3.7e-29
VEF03081.1|971142_971295_-	phage protein	NA	A7J275	Streptococcus_phage	88.0	6.0e-16
VEF03083.1|971291_971636_-	phage protein	NA	A7J274	Streptococcus_phage	86.0	7.2e-49
VEF03085.1|971675_971879_-	phage protein	NA	NA	NA	NA	NA
VEF03087.1|971871_972042_-	phage protein	NA	A7J273	Streptococcus_phage	87.5	2.9e-19
VEF03089.1|972070_972328_-	phage protein	NA	NA	NA	NA	NA
VEF03091.1|972415_972616_-	phage protein	NA	A7J271	Streptococcus_phage	92.3	4.9e-26
VEF03093.1|972666_972858_-	phage protein	NA	A7J270	Streptococcus_phage	100.0	7.3e-27
VEF03095.1|973498_973849_+	repressor - phage associated	NA	M1I9X0	Streptococcus_phage	85.3	1.2e-48
VEF03097.1|973862_974246_+	phage protein	NA	A7J268	Streptococcus_phage	98.4	1.5e-68
VEF03099.1|974256_974808_+	phage protein	NA	A7J267	Streptococcus_phage	92.3	9.0e-86
VEF03101.1|974983_976081_+	DNA integration/recombination/inversion protein	NA	Q938N9	Temperate_phage	94.8	1.7e-197
VEF03103.1|976324_977269_+	magnesium and cobalt transport protein	NA	NA	NA	NA	NA
VEF03105.1|977400_978057_+	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
VEF03107.1|978189_978429_-	SSU ribosomal protein S18p @ SSU ribosomal protein S18p, zinc-independent	NA	NA	NA	NA	NA
VEF03109.1|978593_979085_-	single strand binding protein	NA	A0A286QNX2	Streptococcus_phage	74.2	1.7e-59
>prophage 7
LR134314	Streptococcus pyogenes strain NCTC8302 genome assembly, chromosome: 1	1834173	1480101	1492536	1834173		Synechococcus_phage(28.57%)	8	NA	NA
VEF03846.1|1480101_1480713_-	phosphoribosyl carboxyaminoimidazole mutase	NA	A0A2P0VNU7	Tetraselmis_virus	43.8	1.1e-18
VEF03847.1|1480870_1482136_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
VEF03848.1|1482388_1483513_+	bacterial SH3 domain protein	NA	F8HGP2	Streptococcus_phage	28.6	1.0e-06
VEF03849.1|1483571_1485119_-	IMP cyclohydrolase / Phosphoribosylaminoimidazolecarboxamide formyltransferase	NA	E3SNU8	Prochlorococcus_phage	51.8	2.8e-44
VEF03850.1|1485302_1485857_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	36.1	2.4e-25
VEF03851.1|1486024_1487047_-	phosphoribosylaminoimidazole synthetase	NA	A0A0E3FGG1	Synechococcus_phage	41.7	2.4e-63
VEF03852.1|1487074_1488529_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.7	3.7e-54
VEF03853.1|1488762_1492536_-	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	26.9	2.7e-40
>prophage 8
LR134314	Streptococcus pyogenes strain NCTC8302 genome assembly, chromosome: 1	1834173	1625243	1681884	1834173	tRNA,protease,bacteriocin,transposase	Streptococcus_phage(31.58%)	59	NA	NA
VEF03963.1|1625243_1625834_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	55.7	2.6e-54
VEF03964.1|1626325_1626601_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
VEF03965.1|1626849_1627485_+	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	63.9	9.2e-66
VEF03966.1|1627502_1628378_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	46.6	2.1e-68
VEF03967.1|1628396_1628636_+	Tpl protein	NA	NA	NA	NA	NA
VEF03968.1|1629039_1629363_+	DNA replication initiation control protein	NA	M1PFV3	Streptococcus_phage	59.4	1.3e-28
VEF03969.1|1629367_1630231_+	corrin/porphyrin methyltransferase	NA	M1PLC5	Streptococcus_phage	73.6	3.6e-113
VEF03970.1|1630257_1630650_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
VEF03971.1|1630696_1631326_-	copper homeostasis protein	NA	NA	NA	NA	NA
VEF03972.1|1631624_1631981_+	arsenate reductase	NA	M1PLC0	Streptococcus_phage	65.8	6.3e-40
VEF03973.1|1632054_1632882_-	3'-exo-deoxyribonuclease	NA	M1PSC0	Streptococcus_phage	78.9	3.8e-128
VEF03974.1|1633115_1634297_+	L-lactate oxidase	NA	NA	NA	NA	NA
VEF03975.1|1634562_1639509_+	LPXTG-motif cell wall anchor domain protein	NA	NA	NA	NA	NA
VEF03976.1|1640280_1640988_+	permease	NA	NA	NA	NA	NA
VEF03977.1|1641230_1643228_+|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SHR2	Klosneuvirus	35.0	1.3e-86
VEF03978.1|1643721_1644735_+	ribonucleotide-diphosphate reductase subunit beta	NA	R4TBI6	Mycobacterium_phage	53.4	5.5e-97
VEF03979.1|1644738_1645227_+	nrdI protein	NA	R4JF54	Bacillus_phage	37.5	1.3e-11
VEF03980.1|1645193_1647374_+	ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	43.2	6.2e-170
VEF03981.1|1647579_1648332_-	ADP-ribosyltransferase	NA	NA	NA	NA	NA
VEF03982.1|1648788_1649229_+	hypothetical membrane associated protein	NA	NA	NA	NA	NA
VEF03983.1|1649416_1649668_+	hypothetical membrane spanning protein	NA	NA	NA	NA	NA
VEF03984.1|1650316_1650493_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEF03985.1|1650569_1650722_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEF03986.1|1650853_1651090_+	Protein of uncharacterised function (DUF2829)	NA	NA	NA	NA	NA
VEF03987.1|1651082_1651781_+	3-ketoacyl-ACP reductase	NA	A0A0N9R355	Chrysochromulina_ericina_virus	25.2	1.2e-10
VEF03988.1|1651856_1652816_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
VEF03989.1|1653148_1654486_+	phosphoglycerate transporter protein	NA	NA	NA	NA	NA
VEF03990.1|1654659_1656042_+	bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase	NA	A0A2K9L4K9	Tupanvirus	36.0	6.5e-32
VEF03991.1|1656072_1656627_+	ADP-ribose pyrophosphatase	NA	NA	NA	NA	NA
VEF03992.1|1656626_1656878_+	membrane protein	NA	NA	NA	NA	NA
VEF03993.1|1656897_1657593_+	MTA/SAH nucleosidase	NA	NA	NA	NA	NA
VEF03994.1|1657743_1658085_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEF03995.1|1658183_1658831_-	metalloregulator ScaR	NA	NA	NA	NA	NA
VEF03996.1|1658976_1659909_+	manganese-binding protein	NA	NA	NA	NA	NA
VEF03997.1|1659972_1660698_+	manganese transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	32.6	1.1e-17
VEF03998.1|1660698_1661553_+	ABC 3 transport family protein	NA	NA	NA	NA	NA
VEF03999.1|1661699_1662506_-	cyclophilin type peptidyl-prolyl cis-trans isomerase	NA	A0A2H4UTF4	Bodo_saltans_virus	36.6	1.5e-20
VEF04000.1|1662722_1665128_+	cell division protein FtsK	NA	S5VNE3	Mycobacterium_phage	51.4	4.2e-87
VEF04001.1|1665197_1665551_-	integral membrane protein	NA	NA	NA	NA	NA
VEF04002.1|1665772_1666432_+|transposase	transposase	transposase	NA	NA	NA	NA
VEF04003.1|1666976_1667402_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
VEF04004.1|1667507_1668197_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
VEF04005.1|1668526_1669525_+|transposase	transposase	transposase	H7BW61	unidentified_phage	35.0	2.1e-32
VEF04006.1|1669603_1670332_+	uridylate kinase	NA	NA	NA	NA	NA
VEF04007.1|1670360_1670918_+	ribosome recycling factor	NA	NA	NA	NA	NA
VEF04008.1|1671026_1671884_+	s1 RNA binding domain	NA	NA	NA	NA	NA
VEF04009.1|1671956_1672466_+	methionine sulfoxide reductase A	NA	NA	NA	NA	NA
VEF04010.1|1672462_1672678_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
VEF04011.1|1672833_1674009_+	lysM domain protein	NA	A0A0E3XB61	Gordonia_phage	40.5	5.5e-16
VEF04012.1|1674323_1676096_+	myosin-cross-reactive antigen	NA	NA	NA	NA	NA
VEF04013.1|1676254_1677307_+	phosphate starvation-induced protein	NA	W8D063	Erwinia_phage	49.5	6.0e-46
VEF04014.1|1677352_1677928_+	uracil DNA glycosylase superfamily protein	NA	NA	NA	NA	NA
VEF04015.1|1678086_1678584_+|protease	metalloprotease	protease	NA	NA	NA	NA
VEF04016.1|1678564_1678972_+	diacylglycerol kinase	NA	NA	NA	NA	NA
VEF04017.1|1679091_1679988_+	GTP-binding protein Era	NA	NA	NA	NA	NA
VEF04018.1|1680007_1680484_+	phosphohydrolase	NA	NA	NA	NA	NA
VEF04019.1|1680789_1681044_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEF04020.1|1681441_1681687_+|bacteriocin	bacteriocin class II with double-glycine leader peptide family protein	bacteriocin	NA	NA	NA	NA
VEF04021.1|1681701_1681884_+|bacteriocin	bacteriocin class II with double-glycine leader peptide family protein	bacteriocin	NA	NA	NA	NA
>prophage 9
LR134314	Streptococcus pyogenes strain NCTC8302 genome assembly, chromosome: 1	1834173	1810200	1819869	1834173	tRNA,transposase	Streptococcus_phage(50.0%)	7	NA	NA
VEF04149.1|1810200_1812696_+	helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	48.4	3.1e-202
VEF04150.1|1812632_1813613_-|transposase	transposase	transposase	H7BW61	unidentified_phage	35.0	2.7e-32
VEF04151.1|1814122_1815316_+	aspartate aminotransferase	NA	NA	NA	NA	NA
VEF04152.1|1815336_1816683_+|tRNA	asparaginyl-tRNA synthetase	tRNA	A0A2P1EMB4	Moumouvirus	30.7	6.3e-56
VEF04153.1|1817096_1817987_+	P-loop ATPase protein family protein	NA	A0A0R8VB27	Thermobifida_phage	29.8	8.8e-06
VEF04154.1|1817983_1818961_+	transporter	NA	A1IMD5	Streptococcus_phage	74.2	1.2e-138
VEF04155.1|1818957_1819869_+	sporulation Regulator WhiA C terminal domain-containing protein	NA	Q7AWZ3	Streptococcus_phage	64.4	2.9e-105
