The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR134307	Streptococcus milleri strain NCTC10708 genome assembly, chromosome: 1	1890902	366882	374378	1890902		environmental_halophage(16.67%)	8	NA	NA
VEE80187.1|366882_368115_+	cysteine desulfurase, SufS subfamily	NA	Q2XUY6	environmental_halophage	44.1	8.2e-103
VEE80190.1|368101_368551_+	SUF system FeS assembly protein	NA	A0A218MKD1	uncultured_virus	29.9	1.8e-07
VEE80193.1|368640_369882_-	penicillin-binding protein 3	NA	B6DZZ7	Stx2-converting_phage	25.4	6.2e-18
VEE80196.1|370034_371378_+	ATP-dependent RNA helicase	NA	A0A1V0SIR5	Klosneuvirus	31.5	1.9e-49
VEE80199.1|371537_372347_+	inner membrane amino-acid ABC transporter permease protein	NA	NA	NA	NA	NA
VEE80201.1|372346_373090_+	ABC transport system, ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.1	8.0e-29
VEE80204.1|373179_373404_+	membrane associated protein	NA	NA	NA	NA	NA
VEE80206.1|373466_374378_+	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	53.1	2.9e-89
>prophage 2
LR134307	Streptococcus milleri strain NCTC10708 genome assembly, chromosome: 1	1890902	414501	467788	1890902	protease,transposase,tRNA	Streptococcus_phage(35.71%)	50	NA	NA
VEE80316.1|414501_417150_+|tRNA	valyl-tRNA synthetase	tRNA	A0A1V0S951	Catovirus	39.9	9.2e-144
VEE80319.1|417260_417680_+	very short patch repair endonuclease	NA	V5UTF4	Oenococcus_phage	54.2	1.3e-28
VEE80322.1|417683_418277_+|transposase	transposase IS3/IS911 family protein	transposase	A0A1B1P776	Bacillus_phage	32.0	6.9e-07
VEE80325.1|418252_419092_+|transposase	insertion sequence transposase	transposase	A0A1B1P773	Bacillus_phage	49.8	1.3e-62
VEE80328.1|419268_419673_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE80332.1|419802_421023_+	cytosine-specific methyltransferase	NA	V5URQ5	Oenococcus_phage	58.4	1.8e-131
VEE80335.1|421046_422684_+	Uncharacterised protein	NA	V5US45	Oenococcus_phage	29.1	2.3e-20
VEE80338.1|422992_423922_-	cysteine synthase	NA	A0A1X9I5K7	Streptococcus_phage	79.9	4.2e-136
VEE80341.1|424020_424656_-	Xaa-Pro dipeptidase	NA	A0A1X9I5T8	Streptococcus_phage	65.2	7.2e-71
VEE80344.1|424712_426014_+	putative ATP-dependent RNA helicase	NA	A0A1X9I5S6	Streptococcus_phage	64.6	8.2e-162
VEE80347.1|426010_426676_+	putative competence protein FC	NA	NA	NA	NA	NA
VEE80350.1|426754_427297_+	putative 30S ribosomal interface protein S30EA	NA	NA	NA	NA	NA
VEE80353.1|427494_428034_+	methyltransferase	NA	NA	NA	NA	NA
VEE80356.1|428023_428521_+	phosphopantetheine adenylyltransferase	NA	NA	NA	NA	NA
VEE80359.1|428501_429557_+|protease	Lon-like protease containing a PDZ domain	protease	NA	NA	NA	NA
VEE80362.1|429843_430401_+	transcriptional regulator	NA	NA	NA	NA	NA
VEE80365.1|430434_431517_+	ribosomal RNA large subunit methyltransferase N	NA	NA	NA	NA	NA
VEE80368.1|431509_432028_+	VanZ family protein	NA	NA	NA	NA	NA
VEE80370.1|432022_432697_-	putative type 4 prepilin peptidase	NA	NA	NA	NA	NA
VEE80373.1|432847_433375_+	putative DNA-binding ferritin-like protein	NA	NA	NA	NA	NA
VEE80376.1|433639_433864_+	hypothetical cytosolic protein	NA	NA	NA	NA	NA
VEE80379.1|433857_434238_+	rhodanese family protein	NA	NA	NA	NA	NA
VEE80382.1|434258_434984_-	synthase protein	NA	NA	NA	NA	NA
VEE80385.1|435160_437002_+	GTP-binding protein TypA	NA	A0A2K9L6L3	Tupanvirus	39.6	2.6e-20
VEE80388.1|437066_437345_+	membrane protein	NA	NA	NA	NA	NA
VEE80391.1|437424_438777_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase	NA	NA	NA	NA	NA
VEE80394.1|438778_439849_+	N-acetylglucosaminyl transferase	NA	NA	NA	NA	NA
VEE80397.1|439845_440904_+	putative cell division protein	NA	NA	NA	NA	NA
VEE80400.1|441026_442412_+	cell division protein FtsA	NA	NA	NA	NA	NA
VEE80403.1|442430_443705_+	cell division protein FtsZ	NA	NA	NA	NA	NA
VEE80406.1|443706_444378_+	pyridoxal 5'-phosphate-dependent enzymes class III	NA	NA	NA	NA	NA
VEE80409.1|444387_444930_+	YlmF protein	NA	NA	NA	NA	NA
VEE80412.1|444934_445198_+	membrane protein	NA	NA	NA	NA	NA
VEE80415.1|445202_445994_+	S4 domain-containing protein	NA	NA	NA	NA	NA
VEE80418.1|446003_446789_+	putative cell division protein DivIVA	NA	NA	NA	NA	NA
VEE80421.1|447052_449845_+|tRNA	isoleucyl-tRNA synthetase	tRNA	A0A2H4UVG0	Bodo_saltans_virus	26.3	6.7e-68
VEE80424.1|450326_451451_+	permease	NA	NA	NA	NA	NA
VEE80427.1|451697_453344_+	putative phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	23.3	6.6e-07
VEE80430.1|453457_454798_+	putative hemolysin	NA	NA	NA	NA	NA
VEE80433.1|454833_455595_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	79.0	8.6e-111
VEE80436.1|455622_456126_-|transposase	transposase	transposase	A0A1S5SBP9	Streptococcus_phage	65.9	1.1e-50
VEE80440.1|456274_456988_-	trehalose operon repressor	NA	NA	NA	NA	NA
VEE80443.1|457142_459176_+	putative PTS system, enzyme II	NA	NA	NA	NA	NA
VEE80446.1|459356_460988_+	putative trehalose-6-phosphate hydrolase	NA	NA	NA	NA	NA
VEE80449.1|461146_463345_+	putative nuclease	NA	NA	NA	NA	NA
VEE80452.1|463502_464300_+	pyruvate formate lyase activating enzyme	NA	NA	NA	NA	NA
VEE80455.1|464443_465379_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
VEE80458.1|465429_465942_+	UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase	NA	NA	NA	NA	NA
VEE80461.1|465934_466633_+	Domain of uncharacterised function (DUF1803)	NA	NA	NA	NA	NA
VEE80464.1|467029_467788_+|protease	CAAX amino protease family protein	protease	NA	NA	NA	NA
>prophage 3
LR134307	Streptococcus milleri strain NCTC10708 genome assembly, chromosome: 1	1890902	480827	489428	1890902		Streptococcus_phage(81.82%)	12	NA	NA
VEE80500.1|480827_481592_+	putative branched-chain amino acid transport protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.5	1.2e-16
VEE80503.1|481591_482302_+	branched-chain amino acid transport protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.6	2.2e-15
VEE80507.1|482449_483106_+	putative acetoin utilization protein AcuB	NA	M1NSC5	Streptococcus_phage	71.3	7.2e-82
VEE80510.1|483162_484026_-	YitT family protein	NA	M1Q1P6	Streptococcus_phage	56.4	8.6e-91
VEE80512.1|484178_484817_+	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	66.2	1.3e-75
VEE80515.1|484813_485707_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	56.8	1.4e-83
VEE80518.1|485735_486059_+	initiation-control protein	NA	M1PFV3	Streptococcus_phage	62.9	8.3e-31
VEE80521.1|486061_486925_+	tetrapyrrole methylase family protein	NA	M1PLC5	Streptococcus_phage	70.4	2.2e-107
VEE80524.1|486936_487446_+	methylated DNA-protein cysteine methyltransferase	NA	M1PFU9	Streptococcus_phage	63.0	1.4e-53
VEE80527.1|487462_487816_+	arsenate reductase	NA	M1PLC0	Streptococcus_phage	65.0	5.0e-37
VEE80530.1|487951_488575_+	putative endonuclease III	NA	NA	NA	NA	NA
VEE80533.1|488600_489428_-	putative exodeoxyribonuclease III	NA	M1PSC0	Streptococcus_phage	75.1	2.9e-120
>prophage 4
LR134307	Streptococcus milleri strain NCTC10708 genome assembly, chromosome: 1	1890902	993261	1000790	1890902		Streptococcus_phage(28.57%)	8	NA	NA
VEE81943.1|993261_994350_-	carbamoyl phosphate synthase small subunit	NA	R4TGJ8	Halovirus	36.7	7.1e-58
VEE81946.1|994392_995313_-	aspartate carbamoyltransferase catalytic subunit	NA	M1HGA5	Paramecium_bursaria_Chlorella_virus	31.0	6.0e-26
VEE81949.1|995373_996642_-	uracil permease	NA	Q9KX94	Enterobacteria_phage	35.1	6.3e-58
VEE81952.1|996646_997168_-	pyrimidine regulatory protein PyrR	NA	NA	NA	NA	NA
VEE81955.1|997440_998352_-	cytoplasmic protein	NA	Q7AWZ3	Streptococcus_phage	71.0	1.1e-115
VEE81958.1|998348_999326_-	transporter	NA	A1IMD5	Streptococcus_phage	84.9	2.4e-158
VEE81961.1|999322_1000213_-	glmZ(sRNA)-inactivating NTPase	NA	A0A2D1GP35	Streptomyces_phage	32.8	7.2e-08
VEE81964.1|1000367_1000790_-	nucleoside diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	8.3e-23
>prophage 5
LR134307	Streptococcus milleri strain NCTC10708 genome assembly, chromosome: 1	1890902	1015963	1024916	1890902	protease	Bacillus_phage(50.0%)	9	NA	NA
VEE82005.1|1015963_1017700_-	multidrug ABC transporter	NA	W8CYL7	Bacillus_phage	27.6	1.1e-44
VEE82008.1|1017912_1018710_-	formate-nitrate transporter	NA	NA	NA	NA	NA
VEE82010.1|1018885_1019593_-	putative autolysin/N-acetylmuramidase	NA	Q9ZXE4	Bacillus_phage	41.6	7.4e-16
VEE82013.1|1019917_1020505_-	putative ribosome biogenesis GTP-binding protein YsxC	NA	NA	NA	NA	NA
VEE82016.1|1020517_1021750_-|protease	ATP-dependent Clp protease, ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	58.2	4.9e-132
VEE82019.1|1021803_1021977_-	membrane associated protein	NA	NA	NA	NA	NA
VEE82022.1|1021976_1022489_-	dihydrofolate reductase	NA	G3MBI7	Bacillus_virus	38.5	1.2e-23
VEE82025.1|1022773_1023613_-	thymidylate synthase	NA	U5J9N5	Bacillus_phage	57.1	2.1e-86
VEE82028.1|1023698_1024916_-	putative permease, chloride channel	NA	A0A1X9I5Z9	Streptococcus_phage	50.1	1.7e-92
>prophage 6
LR134307	Streptococcus milleri strain NCTC10708 genome assembly, chromosome: 1	1890902	1116210	1124136	1890902		Escherichia_phage(33.33%)	8	NA	NA
VEE82289.1|1116210_1117215_-	catabolite control protein A	NA	C6ZCU4	Enterobacteria_phage	27.5	3.4e-22
VEE82292.1|1117479_1118562_+	putative proline dipeptidase	NA	NA	NA	NA	NA
VEE82295.1|1119084_1119666_-	methyltransferase small domain superfamily protein	NA	NA	NA	NA	NA
VEE82298.1|1119924_1120944_-	UDP-glucose 4-epimerase	NA	A0A2K9L1R4	Tupanvirus	49.4	1.6e-91
VEE82300.1|1120978_1122025_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.5	5.4e-71
VEE82304.1|1122056_1122650_-	dTDP-4-keto-6-deoxyglucose-3,5-epimerase	NA	H9NC63	Sphingomonas_phage	33.1	5.1e-10
VEE82307.1|1122653_1123523_-	Glucose-1-phosphate thymidylyltransferase	NA	K7QKA7	Escherichia_phage	64.2	1.9e-101
VEE82311.1|1123665_1124136_-	putative phosphohydrolase	NA	A0A1W6DX89	Sphingobium_phage	31.8	1.6e-06
>prophage 7
LR134307	Streptococcus milleri strain NCTC10708 genome assembly, chromosome: 1	1890902	1539367	1551450	1890902		Streptococcus_phage(62.5%)	12	NA	NA
VEE83457.1|1539367_1539706_-	cadmium efflux system accessory protein	NA	E4ZFI8	Streptococcus_phage	32.4	4.9e-10
VEE83460.1|1539717_1540332_-	cadmium resistance protein	NA	NA	NA	NA	NA
VEE83463.1|1540783_1541146_+	lipoprotein	NA	NA	NA	NA	NA
VEE83466.1|1541534_1544213_-	Type III restriction-modification system DNA endonuclease res	NA	A0A2I7SC38	Paenibacillus_phage	24.1	2.0e-08
VEE83469.1|1544202_1545882_-	adenine specific DNA methylase Mod	NA	A0A0K1LNZ9	Escherichia_phage	37.2	6.6e-71
VEE83472.1|1545947_1546241_-	Uncharacterised protein	NA	Q6DMX6	Streptococcus_phage	59.2	6.6e-19
VEE83475.1|1546233_1546596_-	Uncharacterised protein	NA	M1PLN9	Streptococcus_phage	54.5	6.2e-27
VEE83478.1|1546592_1548008_-	SOS response UmuC protein	NA	M1Q231	Streptococcus_phage	72.8	1.2e-198
VEE83481.1|1548011_1548698_-	phage transcriptional repressor	NA	A0A1S5SAF1	Streptococcus_phage	49.0	2.4e-59
VEE83484.1|1548706_1549564_-	putative transcriptional regulator	NA	NA	NA	NA	NA
VEE83487.1|1549660_1551085_-	lmo0472	NA	NA	NA	NA	NA
VEE83490.1|1551108_1551450_-	Cro/CI family transcriptional regulator	NA	Q8LTJ3	Vibrio_virus	40.2	8.0e-08
>prophage 8
LR134307	Streptococcus milleri strain NCTC10708 genome assembly, chromosome: 1	1890902	1868348	1877195	1890902		Streptococcus_phage(33.33%)	9	NA	NA
VEE84389.1|1868348_1869188_-	cobalt import ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	33.0	6.7e-16
VEE84392.1|1869172_1870051_-	cobalt import ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.8	1.9e-21
VEE84395.1|1870001_1870541_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
VEE84398.1|1870551_1871373_-	transcriptional regulation protein	NA	NA	NA	NA	NA
VEE84401.1|1871431_1872727_-	putative zinc-dependent peptidase	NA	A0A1E1EST3	Acanthamoeba_castellanii_mimivirus	26.0	3.1e-20
VEE84404.1|1872726_1873974_-	putative zinc-dependent peptidase	NA	A0A1X9I714	Streptococcus_phage	51.4	1.5e-115
VEE84407.1|1874148_1874529_+	Uncharacterized conserved protein	NA	A0A1X9I5V8	Streptococcus_phage	62.7	3.5e-20
VEE84410.1|1874531_1875629_+	DNA replication and repair protein	NA	NA	NA	NA	NA
VEE84413.1|1875713_1877195_-	inosine-5-monophosphate dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.9	8.1e-97
