The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR134306	Yersinia pseudotuberculosis strain NCTC3571 genome assembly, chromosome: 1	4938759	444555	485916	4938759	transposase,bacteriocin,protease	Bacillus_phage(40.0%)	37	NA	NA
VEE70157.1|444555_445527_+|transposase	transposase	transposase	Q2A0A7	Sodalis_phage	55.6	1.2e-72
VEE70158.1|446088_446991_+	ferrous iron efflux protein F	NA	NA	NA	NA	NA
VEE70159.1|447208_448192_+	6-phosphofructokinase	NA	NA	NA	NA	NA
VEE70160.1|448412_449402_+	sulfate transporter subunit	NA	NA	NA	NA	NA
VEE70161.1|449398_449671_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE70162.1|449651_450428_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
VEE70163.1|450545_451973_-	transporter, divalent anion:Na+ symporter (DASS) family	NA	NA	NA	NA	NA
VEE70164.1|452038_452752_-	putative transferase	NA	NA	NA	NA	NA
VEE70165.1|452748_453486_-	GlcNAc-PI de-N-acetylase family	NA	NA	NA	NA	NA
VEE70166.1|453679_454858_+	transcriptional regulator	NA	NA	NA	NA	NA
VEE70167.1|455088_455856_-	triosephosphate isomerase	NA	NA	NA	NA	NA
VEE70168.1|455984_456620_-	Protein of uncharacterised function (DUF1454)	NA	NA	NA	NA	NA
VEE70169.1|456767_457202_+	Inner membrane protein yhaH	NA	NA	NA	NA	NA
VEE70170.1|457635_458382_-	ferredoxin-NADP reductase	NA	NA	NA	NA	NA
VEE70171.1|458536_459547_-	fructose 1,6-bisphosphatase II	NA	NA	NA	NA	NA
VEE70172.1|459799_461323_-	glycerol kinase	NA	NA	NA	NA	NA
VEE70173.1|461499_462348_-	glycerol uptake facilitator protein	NA	M1HWZ0	Paramecium_bursaria_Chlorella_virus	27.5	3.2e-13
VEE70174.1|463087_463327_+	putative cytoplasmic protein	NA	NA	NA	NA	NA
VEE70175.1|463667_465782_-|bacteriocin	bacteriocin ABC transporter ATP-binding protein/permease	bacteriocin	W8CYL7	Bacillus_phage	26.5	2.8e-34
VEE70176.1|465774_467067_-	putative secretion permease	NA	NA	NA	NA	NA
VEE70177.1|467279_467519_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE70178.1|468148_468733_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE70179.1|468849_469335_-	ribonuclease activity regulator protein RraA	NA	NA	NA	NA	NA
VEE70180.1|469476_470406_-	1,4-dihydroxy-2-naphthoate octaprenyltransferase	NA	NA	NA	NA	NA
VEE70181.1|470628_471960_-|protease	ATP-dependent protease ATP-binding subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.8	1.2e-43
VEE70182.1|472030_472555_-|protease	ATP-dependent protease peptidase subunit	protease	NA	NA	NA	NA
VEE70183.1|472654_473401_-	cell division protein FtsN	NA	NA	NA	NA	NA
VEE70184.1|473565_474594_-	DNA-binding transcriptional regulator CytR	NA	NA	NA	NA	NA
VEE70185.1|474947_477146_-	primosome assembly protein PriA	NA	NA	NA	NA	NA
VEE70186.1|477398_477614_+	50S ribosomal protein L31	NA	NA	NA	NA	NA
VEE70187.1|478138_478594_-	YiaAB two helix domain-containing protein	NA	NA	NA	NA	NA
VEE70188.1|478942_479260_-	transcriptional repressor protein MetJ	NA	NA	NA	NA	NA
VEE70189.1|479637_480798_+	cystathionine gamma-synthase	NA	NA	NA	NA	NA
VEE70190.1|480800_483236_+	bifunctional aspartate kinase II/homoserine dehydrogenase II	NA	NA	NA	NA	NA
VEE70191.1|483468_484353_+	5,10-methylenetetrahydrofolate reductase	NA	NA	NA	NA	NA
VEE70192.1|484561_485347_-|transposase	transposase for insertion sequence IS1661	transposase	A0A1B1P773	Bacillus_phage	45.3	2.4e-55
VEE70193.1|485400_485916_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 2
LR134306	Yersinia pseudotuberculosis strain NCTC3571 genome assembly, chromosome: 1	4938759	812142	854520	4938759	capsid,head,tRNA,integrase,plate,holin,transposase,terminase,tail	Erwinia_phage(50.0%)	54	812012:812060	844845:844893
812012:812060	attL	ATTTGGTGGCCCCTACTGGACTTGAACCAGTGACCAAGCGATTATGAGT	NA	NA	NA	NA
VEE70452.1|812142_813165_-|integrase	integrase family protein	integrase	A0A218M4I3	Erwinia_phage	77.1	1.1e-156
VEE70453.1|813164_813755_-	CI repressor	NA	A0A218M4J1	Erwinia_phage	62.8	2.0e-67
VEE70454.1|813884_814145_+	Uncharacterised protein	NA	A0A218M4I5	Erwinia_phage	68.8	3.5e-24
VEE70455.1|814175_814685_+	regulatory protein CII	NA	A0A1S6L008	Salmonella_phage	50.6	3.0e-43
VEE70456.1|814694_814880_+	Protein of uncharacterised function (DUF2724)	NA	NA	NA	NA	NA
VEE70457.1|814891_815203_+	gpB bacteriophage P2	NA	NA	NA	NA	NA
VEE70458.1|815268_815541_+	Protein of uncharacterised function (DUF2732)	NA	NA	NA	NA	NA
VEE70459.1|815552_815816_+	putative relication initiation protein	NA	A0A218M4I8	Erwinia_phage	45.0	1.7e-13
VEE70460.1|815812_818092_+	replication gene A	NA	Q858T4	Yersinia_virus	56.5	1.9e-238
VEE70461.1|818114_818474_+	putative GP46 protein	NA	H9C172	Pectobacterium_phage	42.5	1.8e-18
VEE70462.1|818677_818863_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE70463.1|819179_820445_+	Predicted ATPase	NA	NA	NA	NA	NA
VEE70464.1|820446_821157_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE70465.1|821404_821623_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE70466.1|821742_822009_+|transposase	putative transposase	transposase	NA	NA	NA	NA
VEE70467.1|822029_822830_+|transposase	IS1400 transposase B	transposase	S5WIU1	Leptospira_phage	38.0	1.5e-44
VEE70468.1|822884_823922_-|capsid	phage-related capsid packaging protein	capsid	F1BUR7	Erwinia_phage	78.4	1.8e-159
VEE70469.1|823918_824683_-|terminase	phage terminase, ATPase subunit	terminase	O80303	Escherichia_phage	46.6	2.1e-56
VEE70470.1|824679_826377_-|terminase	phage terminase, ATPase subunit	terminase	F1BUR2	Erwinia_phage	80.7	3.0e-273
VEE70471.1|826600_827455_+	V protein bacteriophage 186	NA	Q01088	Escherichia_phage	60.7	1.1e-90
VEE70472.1|827531_828770_+|capsid	major capsid protein	capsid	F1BUQ8	Erwinia_phage	74.9	3.2e-147
VEE70473.1|828773_829433_+|terminase	phage terminase, endonuclease subunit	terminase	F1BUQ7	Erwinia_phage	69.9	7.2e-82
VEE70474.1|829532_830006_+|head	phage head completion-stabilization protein	head	M1SNN6	Escherichia_phage	58.1	2.6e-41
VEE70475.1|830005_830209_+|tail	phage-related tail protein	tail	E5G6M9	Salmonella_phage	64.2	3.5e-19
VEE70476.1|830211_830421_+|holin	prophage Hp1 family holin	holin	A0A218M4L5	Erwinia_phage	44.9	1.7e-08
VEE70477.1|830404_830911_+	prophage lysozyme; Phage lysin	NA	A0A218M4K3	Erwinia_phage	63.5	3.1e-56
VEE70478.1|830912_831329_+	putative regulatory protein	NA	F1BUQ1	Erwinia_phage	49.6	8.7e-25
VEE70479.1|831424_831880_+|tail	phage tail protein	tail	F1BUP9	Erwinia_phage	63.3	4.0e-47
VEE70480.1|831876_832332_+|tail	prophage tail completion protein	tail	O80313	Escherichia_phage	63.1	4.4e-46
VEE70481.1|832377_832485_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE70482.1|832610_832706_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE70483.1|832715_833342_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE70484.1|833537_834179_+|plate	phage-related baseplate assembly protein	plate	A0A0M4S6F6	Salmonella_phage	60.6	2.6e-68
VEE70485.1|834175_834526_+|plate	phage baseplate assembly protein	plate	F1BUP4	Erwinia_phage	68.1	1.2e-38
VEE70486.1|834530_835439_+|plate	baseplate assembly protein J	plate	F1BUP3	Erwinia_phage	80.1	5.1e-126
VEE70487.1|835431_836040_+|tail	phage tail fibers	tail	F1BUP2	Erwinia_phage	78.6	3.9e-90
VEE70488.1|836036_837476_+|tail	tail fiber protein	tail	F1BUP1	Erwinia_phage	78.9	9.9e-76
VEE70489.1|837487_837970_+|tail	putative tail fiber assembly protein	tail	F1BUP0	Erwinia_phage	41.3	2.6e-28
VEE70490.1|838097_839267_+|tail	phage tail sheath monomer	tail	F1BUU3	Erwinia_phage	79.9	3.1e-184
VEE70491.1|839280_839796_+|tail	major tail tube protein	tail	S4TNZ0	Salmonella_phage	73.1	2.3e-67
VEE70492.1|839846_840158_+|tail	tail protein gpE P2 bacteriophage	tail	F1BUU0	Erwinia_phage	62.0	1.0e-25
VEE70493.1|840052_840274_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE70494.1|840305_842732_+|tail	bacteriophage P2 tail protein gpT	tail	U5N0T4	Enterobacteria_phage	44.5	8.4e-160
VEE70495.1|842731_843217_+|tail	phage-related tail protein	tail	S4TUC3	Salmonella_phage	60.4	1.5e-47
VEE70496.1|843213_844377_+	gene D protein	NA	A0A0M5M5V5	Salmonella_phage	66.7	4.3e-146
VEE70497.1|844483_844702_+	prophage p2 ogr protein	NA	Q37973	Salmonella_virus	70.8	1.2e-25
VEE70498.1|845119_846958_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	33.3	1.9e-34
844845:844893	attR	ATTTGGTGGCCCCTACTGGACTTGAACCAGTGACCAAGCGATTATGAGT	NA	NA	NA	NA
VEE70499.1|847115_848864_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	38.2	8.7e-74
VEE70500.1|848999_849215_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
VEE70501.1|849627_850641_+	putative DNA-binding/iron metalloprotein/AP endonuclease	NA	A0A0R6PI74	Moraxella_phage	57.7	6.5e-106
VEE70502.1|850837_851488_-	putative glycerol-3-phosphate acyltransferase PlsY	NA	NA	NA	NA	NA
VEE70503.1|851595_851955_+	bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase	NA	NA	NA	NA	NA
VEE70504.1|852228_853047_+	undecaprenyl pyrophosphate phosphatase	NA	NA	NA	NA	NA
VEE70505.1|853281_854520_-|tRNA	multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase	tRNA	A0A076G5T8	Escherichia_phage	43.1	4.7e-82
>prophage 3
LR134306	Yersinia pseudotuberculosis strain NCTC3571 genome assembly, chromosome: 1	4938759	2047744	2068857	4938759	integrase	Burkholderia_phage(36.84%)	28	2048976:2048988	2055047:2055059
VEE71518.1|2047744_2048998_+	isocitrate dehydrogenase	NA	Q77Z09	Phage_21	88.9	5.2e-20
2048976:2048988	attL	ACGCCATTATTCA	NA	NA	NA	NA
VEE71519.1|2049121_2050246_-|integrase	integrase	integrase	Q77Z04	Phage_21	56.4	4.2e-122
VEE71520.1|2050229_2050472_-	putative excisionase	NA	NA	NA	NA	NA
VEE71521.1|2050496_2051432_-	RecT family	NA	A0A193GYL3	Enterobacter_phage	62.2	4.1e-107
VEE71522.1|2051711_2052089_+	putative late gene antiterminator protein	NA	A0A1R3Y5U9	Salmonella_virus	77.4	3.3e-23
VEE71523.1|2052088_2052352_+	Uncharacterised protein	NA	A0A0U2CI04	Pseudomonas_phage	56.6	1.2e-19
VEE71524.1|2052351_2052849_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE71525.1|2052848_2053232_+	Uncharacterised protein	NA	Q6IWV0	Burkholderia_phage	38.1	1.9e-13
VEE71526.1|2053221_2053761_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE71527.1|2053773_2055288_+	Protein of uncharacterised function (DUF3383)	NA	I7B2P4	Escherichia_phage	41.1	2.2e-94
2055047:2055059	attR	TGAATAATGGCGT	NA	NA	NA	NA
VEE71528.1|2055299_2055740_+	Uncharacterised protein	NA	A0A0F6SJB3	Pseudomonas_phage	50.0	2.0e-35
VEE71529.1|2055739_2055979_+	Uncharacterised protein	NA	Q6IWV4	Burkholderia_phage	49.3	1.7e-12
VEE71530.1|2056078_2056411_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE71531.1|2056414_2057254_+	Uncharacterised protein	NA	Q6IWQ0	Burkholderia_phage	42.8	3.1e-53
VEE71532.1|2057235_2057913_+	Uncharacterised protein	NA	Q6IWQ1	Burkholderia_phage	50.6	2.2e-41
VEE71533.1|2057909_2058269_+	Uncharacterised protein	NA	Q6IWQ2	Burkholderia_phage	47.8	1.9e-20
VEE71534.1|2058252_2059452_+	Uncharacterized homolog of phage Mu protein gp47	NA	Q6IWQ3	Burkholderia_phage	45.5	2.5e-80
VEE71535.1|2059510_2060338_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE71536.1|2060397_2062209_+	Protein of uncharacterised function (DUF2612)	NA	Q6IWQ4	Burkholderia_phage	36.8	1.5e-33
VEE71537.1|2062212_2062434_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE71538.1|2062426_2064208_+	Ig-like domain-containing protein	NA	H9C1B7	Pectobacterium_phage	59.3	5.0e-194
VEE71539.1|2064589_2064835_-	DinI family protein	NA	K7PLW4	Enterobacteria_phage	45.0	1.5e-11
VEE71540.1|2064848_2065091_-	DinI family protein	NA	K7PKR6	Enterobacteria_phage	70.1	2.5e-24
VEE71541.1|2065271_2065448_+	isocitrate dehydrogenase	NA	Q77Z09	Phage_21	88.9	5.5e-21
VEE71542.1|2065593_2066262_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
VEE71543.1|2066331_2066637_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
VEE71544.1|2066896_2067157_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE71545.1|2067276_2068857_-	methyl-accepting chemotaxis protein	NA	A0A1B0V854	Salmonella_phage	50.7	2.5e-35
>prophage 4
LR134306	Yersinia pseudotuberculosis strain NCTC3571 genome assembly, chromosome: 1	4938759	2076175	2091859	4938759	tail	Burkholderia_virus(33.33%)	26	NA	NA
VEE71554.1|2076175_2076613_-	Mu-like prophage protein gp16	NA	Q6QIE7	Burkholderia_phage	50.0	4.7e-29
VEE71555.1|2076646_2077264_-	Protein of uncharacterised function (DUF3164)	NA	A4JWM8	Burkholderia_virus	65.7	7.3e-76
VEE71556.1|2077336_2077600_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE71557.1|2077639_2078794_-	ABC-type oligopeptide transport system, ATPase component	NA	Q6QIE1	Burkholderia_phage	55.6	5.8e-111
VEE71558.1|2078805_2080551_-	Integrase core domain	NA	Q6QIE0	Burkholderia_phage	63.6	6.4e-210
VEE71559.1|2080564_2081488_-	Uncharacterised protein	NA	A4JWN3	Burkholderia_virus	52.9	5.4e-75
VEE71560.1|2081507_2081816_-	IclR helix-turn-helix domain	NA	Q5ZR02	Pseudomonas_phage	63.5	5.8e-26
VEE71561.1|2081818_2082052_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE71562.1|2082048_2082531_-	Uncharacterised protein	NA	A4JWN5	Burkholderia_virus	57.4	1.4e-50
VEE71563.1|2082643_2082889_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE71564.1|2083037_2083223_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE71565.1|2083272_2083479_-	phage-associated protein, BcepMu gp16 family	NA	NA	NA	NA	NA
VEE71566.1|2083574_2084006_+	XRE family transcriptional regulator	NA	K4NXA8	Burkholderia_phage	56.7	1.2e-13
VEE71567.1|2084031_2084577_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE71568.1|2084707_2085076_+	Uncharacterised protein	NA	A4JWP3	Burkholderia_virus	59.1	1.1e-23
VEE71569.1|2085072_2085684_+	membrane-bound lytic transglycosylase F	NA	J9SHG5	Pseudomonas_phage	65.4	3.8e-69
VEE71570.1|2085674_2086097_+	Uncharacterised protein	NA	X4Y6P1	Pseudomonas_phage	37.8	1.2e-10
VEE71571.1|2086199_2086526_+	Uncharacterised protein	NA	A4JWP6	Burkholderia_virus	49.5	1.6e-18
VEE71572.1|2086467_2086830_+	Uncharacterised protein	NA	A0A0S4L0A3	Pseudomonas_phage	60.6	1.2e-30
VEE71573.1|2086829_2087384_+	Protein of uncharacterised function (DUF3486)	NA	Q6QIC2	Burkholderia_phage	55.4	3.5e-45
VEE71574.1|2087383_2088640_+	Mu-like prophage FluMu protein gp28	NA	A0A219VH72	Ochrobactrum_phage	47.3	1.4e-94
VEE71575.1|2088605_2089289_+|tail	phage tail fibers	tail	A4JWL7	Burkholderia_virus	49.5	3.8e-17
VEE71576.1|2089285_2089795_+	Uncharacterised protein	NA	A2I2X8	Vibrio_virus	40.4	1.7e-22
VEE71577.1|2089805_2090597_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE71578.1|2090605_2090944_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE71579.1|2091094_2091859_+	D12 class N6 adenine-specific DNA methyltransferase	NA	A2I2Y7	Vibrio_virus	65.7	1.5e-99
>prophage 5
LR134306	Yersinia pseudotuberculosis strain NCTC3571 genome assembly, chromosome: 1	4938759	2136542	2189324	4938759	protease,capsid,portal,coat,tRNA,integrase,plate,transposase,tail	Escherichia_phage(18.75%)	80	2131822:2131835	2154947:2154960
2131822:2131835	attL	TTGATATGGCGCAA	NA	NA	NA	NA
VEE71618.1|2136542_2136755_-	Uncharacterised protein	NA	A0A0K1LMB5	Caulobacter_phage	42.0	9.9e-09
VEE71619.1|2137287_2138490_+|integrase	integrase family protein	integrase	I6R9B6	Salmonella_phage	56.8	1.2e-135
VEE71620.1|2138453_2138696_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE71621.1|2138777_2138936_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE71622.1|2139026_2139569_-	phage N-6-adenine-methyltransferase	NA	G9L688	Escherichia_phage	66.5	4.9e-60
VEE71623.1|2139565_2139769_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE71624.1|2139768_2139945_-	Uncharacterised protein	NA	A0A2H4A350	Salmonella_phage	47.6	7.2e-05
VEE71625.1|2140011_2140263_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE71626.1|2140246_2140357_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE71627.1|2140356_2140830_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE71628.1|2140819_2141254_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE71629.1|2141311_2141836_-	Uncharacterised protein	NA	A0A060D5A6	Salmonella_phage	59.9	1.3e-49
VEE71630.1|2141857_2142244_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE71631.1|2142264_2142861_-	Uncharacterised protein	NA	K7PHD7	Enterobacteria_phage	50.0	7.8e-43
VEE71632.1|2142857_2143538_-	phage ATP/GTP-binding protein	NA	A0A2D1GLT5	Escherichia_phage	69.9	5.2e-91
VEE71633.1|2143509_2143758_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE71634.1|2143754_2143934_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE71635.1|2143930_2144062_-	Lambda Phage CIII	NA	NA	NA	NA	NA
VEE71636.1|2144341_2144575_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE71637.1|2144587_2145214_-	pentapeptide repeat-containing protein	NA	A0A220NQW1	Salmonella_phage	56.3	2.6e-28
VEE71638.1|2145327_2145900_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE71639.1|2145938_2146562_-	Uncharacterised protein	NA	A0A220NQT7	Salmonella_phage	53.2	3.3e-60
VEE71640.1|2146566_2146833_-	Uncharacterised protein	NA	A0A248SL63	Klebsiella_phage	87.3	2.1e-32
VEE71641.1|2146835_2147120_-	Uncharacterised protein	NA	K7PMI4	Enterobacteria_phage	42.1	8.9e-05
VEE71642.1|2147643_2147853_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE71643.1|2147915_2148926_-	P63C domain	NA	Q8HA04	Enterobacteria_phage	73.5	1.0e-119
VEE71644.1|2149067_2149799_-	repressor protein CI	NA	A0A2D1GM27	Escherichia_phage	61.0	4.3e-83
VEE71645.1|2149909_2150134_+	phage transcriptional regulator	NA	G8C7U2	Escherichia_phage	83.8	2.8e-30
VEE71646.1|2150245_2150539_+	phage transcriptional regulator	NA	A2SY75	Escherichia_phage	63.9	6.1e-25
VEE71647.1|2150563_2151304_+	Sigma-70, region 4	NA	NA	NA	NA	NA
VEE71648.1|2151300_2152200_+	putative DNA-binding phage protein	NA	A5VW95	Enterobacteria_phage	56.9	1.6e-55
VEE71649.1|2152196_2152883_+	DNA replication protein	NA	A0A2H4J1B6	uncultured_Caudovirales_phage	59.1	4.7e-68
VEE71650.1|2152887_2153337_+	Uncharacterised protein	NA	G8C7V0	Escherichia_phage	36.6	1.7e-05
VEE71651.1|2153333_2153573_+	Uncharacterised protein	NA	T1S9K2	Salmonella_phage	60.0	1.8e-19
VEE71652.1|2153576_2154026_+	Protein of uncharacterised function (DUF1367)	NA	A0A096XEN2	Escherichia_phage	63.1	9.7e-54
VEE71653.1|2154102_2154402_+	Protein of uncharacterised function (DUF2591)	NA	A0A1C9LVU5	Vibrio_phage	46.7	9.1e-08
VEE71654.1|2154394_2154523_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE71655.1|2154515_2154857_+	Uncharacterised protein	NA	K7P7P8	Enterobacteria_phage	43.8	1.5e-14
VEE71656.1|2154828_2155197_+	Uncharacterised protein	NA	NA	NA	NA	NA
2154947:2154960	attR	TTGATATGGCGCAA	NA	NA	NA	NA
VEE71657.1|2155171_2155765_+	phage ninG-like protein	NA	A0A2R2Z332	Escherichia_phage	44.1	2.6e-38
VEE71658.1|2155761_2155956_+	Phage NinH protein	NA	A0A0P0ZGE1	Escherichia_phage	61.1	4.8e-10
VEE71659.1|2155952_2156795_+	antitermination protein	NA	M9NZB0	Enterobacteria_phage	51.8	1.5e-71
VEE71660.1|2157224_2157746_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE71661.1|2157915_2158107_+	Uncharacterised protein	NA	B6SD15	Bacteriophage	61.0	4.0e-17
VEE71662.1|2158137_2158650_+	putative phage lysozyme	NA	I6PBN2	Cronobacter_phage	61.6	2.8e-49
VEE71663.1|2158634_2159096_+	putative prophage endopeptidase	NA	A5LH84	Enterobacteria_phage	43.2	5.9e-22
VEE71664.1|2159448_2160093_+	Uncharacterised protein	NA	A0A1B0Z000	Pseudomonas_phage	33.7	7.5e-07
VEE71665.1|2160314_2160926_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE71666.1|2160867_2162976_+|tail	Bacteriophage tail assembly protein	tail	A0A2K9V3X4	Faecalibacterium_phage	36.5	1.8e-97
VEE71667.1|2162984_2163248_+	gpW	NA	NA	NA	NA	NA
VEE71668.1|2163316_2164885_+|portal	phage portal protein, lambda family	portal	A0A291AUL8	Sinorhizobium_phage	37.7	6.5e-97
VEE71669.1|2164881_2165736_+|protease	protease 4	protease	A0A248XD65	Klebsiella_phage	47.2	3.8e-51
VEE71670.1|2165735_2166293_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE71671.1|2166292_2166694_+	antitermination protein	NA	A0A2I7QJJ6	Vibrio_phage	35.4	6.7e-06
VEE71672.1|2166802_2167849_+|capsid	major capsid protein E	capsid	A0A059WRQ2	Vibrio_phage	29.2	1.7e-37
VEE71673.1|2167850_2168243_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE71674.1|2168242_2168587_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE71675.1|2168583_2169129_+|tail	Mu tail sheath family protein	tail	NA	NA	NA	NA
VEE71676.1|2169134_2169326_+	putative bacteriophage protein	NA	NA	NA	NA	NA
VEE71677.1|2169325_2170834_+|tail	putative bacteriophage tail sheath protein	tail	B5TK67	Pseudomonas_phage	45.2	1.5e-106
VEE71678.1|2170846_2171221_+|tail	Phage tail tube protein	tail	NA	NA	NA	NA
VEE71679.1|2171222_2171522_+	putative bacteriophage protein	NA	NA	NA	NA	NA
VEE71680.1|2171644_2173585_+|coat	putative bacteriophage coat protein	coat	A0A2R3UAN6	Myoviridae_environmental_samples	24.0	2.3e-14
VEE71681.1|2173648_2174353_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE71682.1|2174416_2175823_+	DNA circulation family protein	NA	A0A192Y5U9	Salmonella_phage	27.7	8.6e-24
VEE71683.1|2175819_2176890_+	Mu P family protein	NA	M1PVV2	Vibrio_phage	30.3	2.2e-40
VEE71684.1|2176889_2177483_+	Mu Gp45 domain-containing protein	NA	NA	NA	NA	NA
VEE71685.1|2177479_2177917_+	GP46 family protein	NA	A0A0C4UR04	Shigella_phage	46.2	2.3e-20
VEE71686.1|2177920_2179057_+|plate	baseplate J family protein	plate	B5TK75	Pseudomonas_phage	32.2	2.2e-33
VEE71687.1|2179053_2179650_+	bacteriophage protein GP48	NA	A0A2P9JZK7	Alteromonadaceae_phage	38.3	1.5e-33
VEE71688.1|2179700_2180534_+|tail	bacteriophage tail fiber protein	tail	A0A1J0GW57	Streptomyces_phage	48.2	5.5e-10
VEE71689.1|2180543_2181089_+|tail	tail assembly chaperone gp38	tail	F1BUK2	Cronobacter_phage	42.9	4.2e-27
VEE71690.1|2181324_2183253_+|tRNA	threonyl-tRNA synthetase	tRNA	A0A2K9L297	Tupanvirus	37.1	1.1e-127
VEE71691.1|2183457_2183808_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	31.0	5.0e-05
VEE71692.1|2183904_2184102_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
VEE71693.1|2184139_2184496_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
VEE71694.1|2184994_2185978_+|tRNA	phenylalanyl-tRNA synthetase subunit alpha	tRNA	A0A2K9L3A8	Tupanvirus	38.5	1.7e-34
VEE71695.1|2185991_2188379_+|tRNA	phenylalanyl-tRNA synthetase subunit beta	tRNA	NA	NA	NA	NA
VEE71696.1|2188383_2188680_+	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	40.0	4.2e-13
VEE71697.1|2188865_2189324_+|transposase	insertion sequence transposase	transposase	I4AZI8	Saccharomonospora_phage	31.5	8.5e-13
>prophage 6
LR134306	Yersinia pseudotuberculosis strain NCTC3571 genome assembly, chromosome: 1	4938759	2425460	2469296	4938759	protease,transposase	Acinetobacter_phage(23.08%)	42	NA	NA
VEE71894.1|2425460_2426492_-|protease	putative periplasmic protease	protease	A0A2H4UUF9	Bodo_saltans_virus	32.0	1.6e-22
VEE71895.1|2426678_2427440_+	short chain dehydrogenase	NA	NA	NA	NA	NA
VEE71896.1|2427456_2428047_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
VEE71897.1|2428169_2429204_-	23S rRNA pseudouridylate synthase B	NA	NA	NA	NA	NA
VEE71898.1|2429533_2430154_-	ycio family	NA	NA	NA	NA	NA
VEE71899.1|2430170_2431097_-	phosphotransferase domain-containing protein	NA	NA	NA	NA	NA
VEE71900.1|2431524_2433087_+	anthranilate synthase component I	NA	NA	NA	NA	NA
VEE71901.1|2433086_2433665_+	anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	37.3	7.4e-30
VEE71902.1|2433679_2434678_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	38.7	7.7e-51
VEE71903.1|2434681_2436109_+	bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase	NA	A0A0P0IR83	Acinetobacter_phage	39.0	2.9e-35
VEE71904.1|2436265_2437456_+	tryptophan synthase subunit beta	NA	NA	NA	NA	NA
VEE71905.1|2437455_2438262_+	tryptophan synthase subunit alpha	NA	NA	NA	NA	NA
VEE71906.1|2438604_2438919_+	putative lipoprotein	NA	NA	NA	NA	NA
VEE71907.1|2439065_2439701_-	outer membrane protein W	NA	NA	NA	NA	NA
VEE71908.1|2440186_2440957_+	putative inner membrane protein	NA	NA	NA	NA	NA
VEE71909.1|2441077_2442817_-	putative sulfate permease	NA	A0A2H4J153	uncultured_Caudovirales_phage	26.6	2.4e-15
VEE71910.1|2443047_2443590_+	intracellular septation protein A	NA	NA	NA	NA	NA
VEE71911.1|2443669_2444182_+	putative acyl-CoA thioester hydrolase	NA	NA	NA	NA	NA
VEE71912.1|2444147_2444948_-|transposase	IS1400 transposase B	transposase	S5WIU1	Leptospira_phage	38.0	1.5e-44
VEE71913.1|2444968_2445235_-|transposase	putative transposase	transposase	NA	NA	NA	NA
VEE71914.1|2445387_2446146_-	transporter	NA	NA	NA	NA	NA
VEE71915.1|2446177_2446300_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE71916.1|2446497_2446743_+	YciI-like protein	NA	NA	NA	NA	NA
VEE71917.1|2446980_2447226_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VEE71918.1|2447342_2447606_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE71919.1|2447826_2448366_-	attachment invasion locus protein	NA	A0A1B0VBR9	Salmonella_phage	42.4	2.1e-26
VEE71920.1|2449412_2450873_+	cardiolipin synthetase	NA	NA	NA	NA	NA
VEE71921.1|2451007_2451361_+	dsDNA-mimic protein	NA	NA	NA	NA	NA
VEE71922.1|2451658_2451874_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE71923.1|2452444_2453446_-	oligopeptide transport ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.2	1.8e-15
VEE71924.1|2453442_2454444_-	oligopeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.2e-14
VEE71925.1|2454455_2455361_-	oligopeptide transport system permease	NA	NA	NA	NA	NA
VEE71926.1|2455379_2456300_-	oligopeptide transporter permease	NA	NA	NA	NA	NA
VEE71927.1|2456386_2458024_-	periplasmic oligopeptide-binding protein	NA	NA	NA	NA	NA
VEE71928.1|2458667_2458934_+|transposase	putative transposase	transposase	NA	NA	NA	NA
VEE71929.1|2458954_2459755_+|transposase	IS1400 transposase B	transposase	S5WIU1	Leptospira_phage	38.0	1.5e-44
VEE71930.1|2460061_2460706_-	multiple drug resistance protein MarC	NA	NA	NA	NA	NA
VEE71931.1|2461534_2464210_+	bifunctional acetaldehyde-CoA/alcohol dehydrogenase	NA	NA	NA	NA	NA
VEE71932.1|2464960_2465551_-	thymidine kinase	NA	A0A1Z1LYD5	Serratia_phage	55.8	1.5e-54
VEE71933.1|2466300_2466708_+	global DNA-binding transcriptional dual regulator H-NS	NA	NA	NA	NA	NA
VEE71934.1|2467143_2468439_-	nucleotide sugar dehydrogenase	NA	A0A127AXI2	Bacillus_phage	38.1	4.7e-77
VEE71935.1|2468495_2469296_-|transposase	IS1400 transposase B	transposase	S5WIU1	Leptospira_phage	38.0	1.5e-44
>prophage 7
LR134306	Yersinia pseudotuberculosis strain NCTC3571 genome assembly, chromosome: 1	4938759	2709339	2757896	4938759	capsid,portal,integrase,plate,holin,transposase,terminase,tail	Salmonella_phage(42.86%)	67	2723937:2723996	2758049:2758171
VEE72144.1|2709339_2709444_-|transposase	transposase	transposase	NA	NA	NA	NA
VEE72145.1|2710121_2710556_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE72146.1|2710567_2711074_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE72147.1|2711325_2711499_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE72148.1|2711555_2711894_-|transposase	transposase	transposase	NA	NA	NA	NA
VEE72149.1|2711893_2712754_-|transposase	putative transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	27.9	7.1e-21
VEE72150.1|2712801_2713878_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE72151.1|2713943_2714234_-	Uncharacterized protein conserved in bacteria	NA	K4NZP3	Burkholderia_phage	39.4	1.8e-05
VEE72152.1|2714214_2714487_-	Protein of uncharacterised function (DUF497)	NA	NA	NA	NA	NA
VEE72153.1|2714517_2714877_+	phage-like protein	NA	F1BUP5	Erwinia_phage	62.5	8.9e-18
VEE72154.1|2714873_2715173_+	phage-like protein	NA	A0A218M4K8	Erwinia_phage	64.9	2.6e-23
VEE72155.1|2715911_2716442_+	membrane protein	NA	NA	NA	NA	NA
VEE72156.1|2716422_2716701_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE72157.1|2716825_2717995_+|tail	major tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	79.0	2.8e-177
VEE72158.1|2718006_2718522_+|tail	tail tube protein	tail	A0A218M4J0	Erwinia_phage	67.4	3.8e-62
VEE72159.1|2718575_2718923_+|tail	tail protein	tail	E5G6P9	Salmonella_phage	51.6	8.6e-18
VEE72160.1|2719049_2721965_+|tail	tail fiber component T of bacteriophage P2	tail	Q9ZXK0	Pseudomonas_virus	52.6	9.8e-155
VEE72161.1|2721979_2722441_+	phage P2 GpU	NA	E5G6Q2	Salmonella_phage	56.0	1.6e-43
VEE72162.1|2722437_2723526_+	late control gene D protein	NA	E5G6Q3	Salmonella_phage	64.2	1.8e-130
VEE72163.1|2723680_2723938_-	Uncharacterised protein	NA	NA	NA	NA	NA
2723937:2723996	attL	ACAAAAAAACCGCCTCTCGGCGGTTAACGACATACTCGTACTACTTTGTTTTACTTAGAA	NA	NA	NA	NA
VEE72164.1|2724166_2725174_-|integrase	integrase family protein	integrase	P79671	Haemophilus_phage	59.3	3.4e-107
VEE72165.1|2725173_2725554_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE72166.1|2725859_2726402_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE72167.1|2726436_2726805_-	prophage transcriptional regulator	NA	NA	NA	NA	NA
VEE72168.1|2726865_2727057_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE72169.1|2727069_2727273_+	DNA-binding protein	NA	U3PFJ1	Vibrio_phage	41.1	9.8e-06
VEE72170.1|2727284_2727491_+	phage-like protein	NA	NA	NA	NA	NA
VEE72171.1|2727487_2727793_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE72172.1|2727786_2727933_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE72173.1|2727943_2728204_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE72174.1|2728234_2728540_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE72175.1|2728622_2729315_+	putative exported phage-related protein	NA	A0A059T699	Listeria_phage	57.4	3.2e-11
VEE72176.1|2729311_2729956_+	Orf81 bacteriophage 186	NA	A0A1D9C9N8	Salinivibrio_phage	64.5	7.6e-60
VEE72177.1|2729952_2730771_+	DNA adenine methylase	NA	A0A1S6L011	Salmonella_phage	55.1	5.3e-74
VEE72178.1|2730767_2731763_+	C-5 cytosine-specific DNA methylase	NA	W0LM09	Edwardsiella_phage	53.6	4.7e-93
VEE72179.1|2731759_2734315_+	phage replication protein	NA	E5G6L9	Salmonella_phage	37.8	7.6e-127
VEE72180.1|2734295_2734526_+	phage-like protein	NA	NA	NA	NA	NA
VEE72181.1|2734522_2734867_+	bacteriophage protein gp46	NA	NA	NA	NA	NA
VEE72182.1|2735549_2736581_-|portal	PBSX family phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	66.2	2.0e-131
VEE72183.1|2736577_2737303_-|terminase	phage terminase, ATPase subunit	terminase	F1BUR2	Erwinia_phage	31.4	2.4e-25
VEE72184.1|2737302_2739066_-|terminase	gpP phage P2 terminase	terminase	A0A1S6KZW3	Salmonella_phage	63.9	3.6e-229
VEE72185.1|2739242_2740058_+	V protein phage 186	NA	E5G6M5	Salmonella_phage	71.1	1.3e-75
VEE72186.1|2740094_2741150_+|capsid	major capsid protein	capsid	E5G6M6	Salmonella_phage	62.8	1.9e-124
VEE72187.1|2741156_2741810_+	R protein bacteriophage 186 gb|AAC34151.1|	NA	F1BUQ7	Erwinia_phage	47.7	7.8e-44
VEE72188.1|2742044_2742536_+	orf4 of phage P2 (gene L)	NA	A0A1S5NNA6	Burkholderia_phage	50.3	7.4e-31
VEE72189.1|2742535_2742739_+|tail	WPhiphage-related tail protein	tail	E5G6M9	Salmonella_phage	70.1	1.8e-23
VEE72190.1|2742768_2743155_+|holin	putative phage holin	holin	NA	NA	NA	NA
VEE72191.1|2743141_2743537_+	bacteriophage P7-like protein	NA	A9DET4	Yersinia_phage	71.8	3.5e-47
VEE72192.1|2743541_2743964_+	putative LysB protein-like protein	NA	E5G6N2	Salmonella_phage	48.6	4.9e-23
VEE72193.1|2744062_2744530_+|tail	P2 phage tail completion protein R	tail	F1BUP9	Erwinia_phage	57.2	1.8e-42
VEE72194.1|2744526_2744973_+	O protein	NA	A0A1S6L001	Salmonella_phage	51.4	3.4e-35
VEE72195.1|2744991_2745222_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE72196.1|2745304_2746006_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE72197.1|2746093_2746216_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE72198.1|2746336_2746972_+|plate	phage baseplate assembly protein V	plate	O80314	Escherichia_phage	62.0	7.8e-65
VEE72199.1|2746968_2747322_+|plate	phage baseplate assembly protein W	plate	A0A218M4K8	Erwinia_phage	59.3	2.4e-31
VEE72200.1|2747324_2748233_+	bacteriophage P2-like protein	NA	F1BUP3	Erwinia_phage	73.2	1.3e-118
VEE72201.1|2748225_2748834_+	bacteriophage P2 protein	NA	F1BUP2	Erwinia_phage	75.0	1.7e-85
VEE72202.1|2748830_2750270_+|tail	tail fiber protein	tail	F1BUP1	Erwinia_phage	77.8	3.8e-75
VEE72203.1|2750280_2750760_+|tail	putative tail fiber assembly protein	tail	F1BUP0	Erwinia_phage	41.9	2.0e-28
VEE72204.1|2750893_2752069_+|tail	major tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	79.6	2.3e-179
VEE72205.1|2752080_2752596_+|tail	tail tube protein	tail	A0A218M4J0	Erwinia_phage	67.4	2.9e-62
VEE72206.1|2752649_2752997_+|tail	tail protein	tail	E5G6P9	Salmonella_phage	51.6	8.6e-18
VEE72207.1|2753123_2756039_+|tail	tail fiber component T of bacteriophage P2	tail	Q9ZXK0	Pseudomonas_virus	46.2	2.6e-155
VEE72208.1|2756053_2756515_+	phage P2 GpU	NA	E5G6Q2	Salmonella_phage	56.0	1.6e-43
VEE72209.1|2756511_2757606_+	late control gene D protein	NA	A0A1S6KZZ5	Salmonella_phage	66.3	2.5e-127
VEE72210.1|2757680_2757896_+	Phage transcriptional activator, Ogr/Delta	NA	S4TNZ3	Salmonella_phage	62.0	4.8e-19
2758049:2758171	attR	ACAAAAAAACCGCCTCTCGGCGGTTAACGACATACTCGTACTACTTTGTTTTACTTAGAATATTTTCCATGGTGCCCGGGGCGGGACTTGAACCCGCACAGCCATAAGCCGAGGGATTTTAAA	NA	NA	NA	NA
>prophage 8
LR134306	Yersinia pseudotuberculosis strain NCTC3571 genome assembly, chromosome: 1	4938759	3272899	3305247	4938759	protease,coat,plate,transposase,terminase,tail	Shigella_phage(21.05%)	38	NA	NA
VEE72647.1|3272899_3273358_-|transposase	transposase for IS1541	transposase	I4AZI8	Saccharomonospora_phage	31.5	8.5e-13
VEE72648.1|3273558_3274563_-	nucleoid-associated protein NdpA	NA	A0A1V0E8C0	Vibrio_phage	48.0	6.3e-85
VEE72649.1|3274740_3274968_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VEE72650.1|3274995_3276792_+	sulfatase family protein	NA	NA	NA	NA	NA
VEE72651.1|3277762_3278839_+	HNH endonuclease domain-containing protein	NA	NA	NA	NA	NA
VEE72652.1|3278840_3279098_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE72653.1|3279126_3279411_+	putative colicin immunity protein	NA	NA	NA	NA	NA
VEE72654.1|3279567_3279660_+|terminase	phage terminase small subunit	terminase	NA	NA	NA	NA
VEE72655.1|3279996_3280359_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE72656.1|3280484_3281921_-	6-phospho-beta-glucosidase	NA	NA	NA	NA	NA
VEE72657.1|3281917_3282043_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE72658.1|3282211_3282952_-	LacI family regulatory protein	NA	NA	NA	NA	NA
VEE72659.1|3283249_3284029_-|tail	putative bacteriophage tail fiber protein	tail	Q9MCR6	Enterobacteria_phage	52.4	7.1e-52
VEE72660.1|3284125_3284728_-	bacteriophage protein GP48	NA	A0A2P9JZK7	Alteromonadaceae_phage	38.6	2.0e-33
VEE72661.1|3284724_3285861_-	putative bacteriophage protein	NA	B5TK75	Pseudomonas_phage	30.5	3.5e-31
VEE72662.1|3285864_3286320_-	putative bacteriophage protein GP46	NA	A0A0C4UR04	Shigella_phage	43.8	4.3e-17
VEE72663.1|3286316_3286913_-|plate	putative bacteriophage (baseplate assembly) protein	plate	NA	NA	NA	NA
VEE72664.1|3286928_3287984_-|tail	putative bacteriophage tail protein	tail	A0A2I7S9G1	Vibrio_phage	27.5	7.9e-38
VEE72665.1|3287980_3289387_-	putative bacteriophage protein	NA	Q8SBG8	Shigella_phage	33.7	2.1e-17
VEE72666.1|3289653_3291147_-|coat	putative bacteriophage coat protein	coat	NA	NA	NA	NA
VEE72667.1|3291267_3291567_-	bacteriophage protein	NA	NA	NA	NA	NA
VEE72668.1|3291568_3291937_-|tail	Phage tail tube protein	tail	NA	NA	NA	NA
VEE72669.1|3291958_3293467_-|tail	putative bacteriophage tail sheath protein	tail	B5TK67	Pseudomonas_phage	44.6	1.3e-105
VEE72670.1|3293463_3293658_-	putative bacteriophage protein	NA	B5TK66	Pseudomonas_phage	60.4	3.5e-08
VEE72671.1|3293662_3294280_-	putative ATP-binding protein	NA	NA	NA	NA	NA
VEE72672.1|3294325_3294616_-	putative bacteriophage protein	NA	H6WRZ3	Salmonella_phage	46.3	7.7e-12
VEE72673.1|3294890_3295685_-	hydroxypyruvate isomerase	NA	NA	NA	NA	NA
VEE72674.1|3295660_3296470_-	transcriptional regulator	NA	NA	NA	NA	NA
VEE72675.1|3296475_3297207_-	putative aldolase	NA	A0A077SK32	Escherichia_phage	55.2	8.9e-57
VEE72676.1|3297203_3298508_-	Hrp-dependent type III effector protein	NA	A0A077SLJ7	Escherichia_phage	46.2	2.6e-91
VEE72677.1|3298718_3299198_-	putative phage antitermination protein Q	NA	S5M7R9	Escherichia_phage	61.0	2.3e-37
VEE72678.1|3299471_3300194_+	putative prophage repressor protein	NA	F1C599	Cronobacter_phage	51.9	2.2e-63
VEE72679.1|3300399_3300642_+	putative stress response protein	NA	K7PKR6	Enterobacteria_phage	65.0	6.9e-22
VEE72680.1|3300813_3301749_+|protease	outer membrane protease	protease	NA	NA	NA	NA
VEE72681.1|3301720_3301897_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE72682.1|3301935_3302688_-|transposase	Putative transposase	transposase	Q716C2	Shigella_phage	74.2	2.5e-110
VEE72683.1|3302798_3303110_-|transposase	transposase and inactivated derivatives	transposase	Q716C1	Shigella_phage	73.2	2.1e-31
VEE72684.1|3303459_3305247_+	methyl-accepting chemotaxis transmembrane protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	63.5	4.0e-10
>prophage 9
LR134306	Yersinia pseudotuberculosis strain NCTC3571 genome assembly, chromosome: 1	4938759	3375494	3434596	4938759	transposase,protease,holin	Planktothrix_phage(13.33%)	54	NA	NA
VEE72741.1|3375494_3375728_-|transposase	transposase	transposase	NA	NA	NA	NA
VEE72742.1|3375783_3376044_-|transposase	putative transposase	transposase	NA	NA	NA	NA
VEE72743.1|3376173_3377529_-	ATP-dependent RNA helicase RhlE	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	35.6	4.1e-55
VEE72744.1|3377919_3378630_+	putative DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
VEE72745.1|3378681_3379668_+	putative membrane fusion protein (MFP) component of efflux pump, membrane anchor protein YbhG	NA	NA	NA	NA	NA
VEE72746.1|3379681_3381424_+	putative ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	34.6	6.3e-24
VEE72747.1|3381428_3382604_+	multidrug ABC transporter permease	NA	NA	NA	NA	NA
VEE72748.1|3382616_3383723_+	ABC transport system, permease component YbhR	NA	NA	NA	NA	NA
VEE72749.1|3383761_3384088_-	ethyl tert-butyl ether degradation EthD	NA	NA	NA	NA	NA
VEE72750.1|3384880_3385792_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
VEE72751.1|3385792_3386902_-	NADH:flavin oxidoreductase	NA	NA	NA	NA	NA
VEE72752.1|3387251_3388616_-	helix-turn-helix, Fis-type	NA	Q6XM27	Feldmannia_irregularis_virus	29.1	1.3e-05
VEE72753.1|3388602_3390417_-	Sensor protein of zinc sigma-54-dependenttwo-component system	NA	W8CYF6	Bacillus_phage	28.4	5.9e-17
VEE72754.1|3390774_3391248_+	zinc resistance protein	NA	NA	NA	NA	NA
VEE72755.1|3391335_3392592_-	xanthosine transporter XapB	NA	NA	NA	NA	NA
VEE72756.1|3392730_3393594_-	purine nucleoside phosphorylase	NA	Q5YBA4	Grouper_iridovirus	40.7	1.7e-51
VEE72757.1|3393906_3394788_+	membrane protein	NA	NA	NA	NA	NA
VEE72758.1|3394825_3395719_-	DNA-binding transcriptional activator XapR	NA	NA	NA	NA	NA
VEE72759.1|3395950_3397999_-|holin	choline transport protein BetT	holin	A0A2I7QNT1	Vibrio_phage	28.5	1.4e-19
VEE72760.1|3398364_3398961_+	transcriptional regulator BetI	NA	NA	NA	NA	NA
VEE72761.1|3399018_3400491_+	betaine aldehyde dehydrogenase	NA	NA	NA	NA	NA
VEE72762.1|3400513_3402217_+|holin	choline dehydrogenase	holin	A0A1V0S9M4	Catovirus	31.5	1.6e-56
VEE72763.1|3402427_3403138_-	membrane protein	NA	NA	NA	NA	NA
VEE72764.1|3403280_3403736_-	molybdopterin guanine dinucleotide biosynthesis protein MoaE	NA	NA	NA	NA	NA
VEE72765.1|3403735_3403981_-	molybdopterin synthase small subunit	NA	NA	NA	NA	NA
VEE72766.1|3403977_3404457_-	molybdenum cofactor biosynthesis protein MoaC	NA	NA	NA	NA	NA
VEE72767.1|3406031_3406178_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE72768.1|3406311_3407235_+	putative transferase with NAD(P)-binding Rossmann-fold domain	NA	A1IMD5	Streptococcus_phage	27.8	3.7e-23
VEE72769.1|3407361_3407607_-	Uncharacterized conserved protein (DUF2132)	NA	NA	NA	NA	NA
VEE72770.1|3407898_3409914_-	excinuclease ABC subunit B	NA	NA	NA	NA	NA
VEE72771.1|3411004_3411715_+	putative amino acid transporter	NA	G9BWD6	Planktothrix_phage	25.3	3.5e-13
VEE72772.1|3411866_3412604_-	dithiobiotin synthetase	NA	NA	NA	NA	NA
VEE72773.1|3412581_3413385_-	biotin synthesis protein BioC	NA	NA	NA	NA	NA
VEE72774.1|3413368_3414520_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
VEE72775.1|3414519_3415557_-	biotin synthase	NA	NA	NA	NA	NA
VEE72776.1|3415655_3416948_+	adenosylmethionine-8-amino-7-oxononanoate aminotransferase	NA	A0A1V0SKB7	Klosneuvirus	32.1	2.5e-17
VEE72777.1|3417133_3418138_-	6-phosphogluconolactonase	NA	NA	NA	NA	NA
VEE72778.1|3418428_3419250_+	pyridoxal phosphate (PLP) phosphatase	NA	NA	NA	NA	NA
VEE72779.1|3419305_3420385_-	molybdate transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.6	2.1e-22
VEE72780.1|3420378_3421074_-	molybdate ABC transporter permease	NA	NA	NA	NA	NA
VEE72781.1|3421073_3421853_-	molybdate transporter periplasmic protein	NA	NA	NA	NA	NA
VEE72782.1|3422087_3422240_-	Uncharacterized membrane protein ybhT	NA	NA	NA	NA	NA
VEE72783.1|3422490_3423282_+	DNA-binding transcriptional regulator ModE	NA	NA	NA	NA	NA
VEE72784.1|3423391_3424882_+	putative molybdenum transport ATP-binding protein ModF	NA	A0A1M7XV31	Cedratvirus	26.8	2.8e-12
VEE72785.1|3424915_3425044_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE72786.1|3425098_3425917_+|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
VEE72787.1|3426276_3427293_+	UDP-galactose-4-epimerase	NA	A0A2K9L1R4	Tupanvirus	45.1	1.0e-79
VEE72788.1|3427302_3428355_+	galactose-1-phosphate uridylyltransferase	NA	NA	NA	NA	NA
VEE72789.1|3428351_3429503_+	galactokinase	NA	NA	NA	NA	NA
VEE72790.1|3429496_3430567_+	aldose 1-epimerase	NA	NA	NA	NA	NA
VEE72791.1|3430859_3431195_+	PsiF repeat-containing protein	NA	NA	NA	NA	NA
VEE72792.1|3431541_3432294_+	phosphoglyceromutase	NA	NA	NA	NA	NA
VEE72793.1|3432475_3433528_-	phospho-2-dehydro-3-deoxyheptonate aldolase	NA	A0A0B6VT43	Edwardsiella_phage	47.7	1.3e-80
VEE72794.1|3433843_3434596_-|transposase	Putative transposase	transposase	Q716C2	Shigella_phage	74.2	2.5e-110
>prophage 10
LR134306	Yersinia pseudotuberculosis strain NCTC3571 genome assembly, chromosome: 1	4938759	3466728	3527897	4938759	transposase,protease,integrase,tRNA	Escherichia_phage(30.77%)	52	3467912:3467928	3530003:3530019
VEE72827.1|3466728_3467958_+|integrase	putative prophage integrase	integrase	A0A1B5FPC6	Escherichia_phage	88.3	1.8e-211
3467912:3467928	attL	GGGGTGATTATGTTCAA	NA	NA	NA	NA
VEE72828.1|3468016_3469087_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE72829.1|3469447_3470371_-	Bpu10I restriction endonuclease	NA	NA	NA	NA	NA
VEE72830.1|3470370_3471513_-	DNA methylase	NA	S4VW41	Pandoravirus	39.0	1.1e-45
VEE72831.1|3471791_3472031_-	Conjugal transfer protein TraD	NA	NA	NA	NA	NA
VEE72832.1|3472185_3473502_-	Large exoprotein involved in heme utilization or adhesion	NA	NA	NA	NA	NA
VEE72833.1|3473698_3473983_-	putative transcriptional regulator	NA	NA	NA	NA	NA
VEE72834.1|3473991_3474234_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE72835.1|3474308_3474413_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE72836.1|3474936_3476340_+	putative Conjugal transfer protein	NA	NA	NA	NA	NA
VEE72837.1|3476559_3478677_+	Predicted ATPase	NA	NA	NA	NA	NA
VEE72838.1|3478843_3479947_+	Retron-type reverse transcriptase	NA	NA	NA	NA	NA
VEE72839.1|3480321_3480876_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE72840.1|3480890_3481472_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE72841.1|3482896_3483403_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE72842.1|3483492_3483795_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE72843.1|3483928_3484228_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE72844.1|3484316_3484520_-	Regulatory protein	NA	A0A2H4J8C8	uncultured_Caudovirales_phage	36.0	8.3e-05
VEE72845.1|3485429_3486734_+|integrase	integrase	integrase	A0A1B5FPC6	Escherichia_phage	46.7	3.0e-103
VEE72846.1|3486730_3487711_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE72847.1|3487815_3488031_+	Predicted transcriptional regulator	NA	NA	NA	NA	NA
VEE72848.1|3488030_3488618_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE72849.1|3488610_3491316_+	Zinc-binding domain of primase-helicase family	NA	A0A1B0VP75	Pseudomonas_phage	32.7	3.9e-73
VEE72850.1|3491321_3491948_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE72851.1|3492076_3492439_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE72852.1|3492479_3493004_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE72853.1|3493104_3493425_+	DNA binding protein	NA	NA	NA	NA	NA
VEE72854.1|3493473_3494199_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE72855.1|3494471_3496664_-	Subtilase family	NA	NA	NA	NA	NA
VEE72856.1|3496656_3497739_-	cell division protein	NA	M4QMW8	Micromonas_pusilla_virus	32.4	4.3e-15
VEE72857.1|3499001_3499460_+|transposase	insertion sequence transposase	transposase	I4AZI8	Saccharomonospora_phage	31.5	8.5e-13
VEE72858.1|3499683_3500214_+|integrase	phage integrase family protein	integrase	A0A1B5FPC6	Escherichia_phage	46.9	3.5e-34
VEE72859.1|3500956_3501208_-	exported protein	NA	NA	NA	NA	NA
VEE72860.1|3501918_3502686_+	acyl-CoA esterase	NA	G1DB77	Mycobacterium_phage	35.1	3.4e-06
VEE72861.1|3502735_3502843_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE72862.1|3503017_3503305_+	LexA regulated protein	NA	NA	NA	NA	NA
VEE72863.1|3503721_3504249_+	flavodoxin FldA	NA	NA	NA	NA	NA
VEE72864.1|3504615_3505062_+	ferric uptake regulator	NA	NA	NA	NA	NA
VEE72865.1|3505502_3508178_-	chitobiase	NA	NA	NA	NA	NA
VEE72866.1|3508505_3509927_-	OprD family outer membrane porin	NA	NA	NA	NA	NA
VEE72867.1|3510632_3512300_-|tRNA	glutaminyl-tRNA synthetase	tRNA	A0A222YZ70	Escherichia_phage	86.9	8.9e-294
VEE72868.1|3512574_3513033_+|transposase	transposase for IS1541	transposase	I4AZI8	Saccharomonospora_phage	31.5	8.5e-13
VEE72869.1|3513225_3515259_-	PTS system N-acetylglucosamine-specific transporter subunit IIABC	NA	NA	NA	NA	NA
VEE72870.1|3515656_3516457_+	glucosamine-6-phosphate deaminase	NA	NA	NA	NA	NA
VEE72871.1|3516476_3517622_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
VEE72872.1|3517638_3518865_+	putative N-acetylglucosamine regulatory protein	NA	NA	NA	NA	NA
VEE72873.1|3518937_3519690_+	UMP phosphatase	NA	NA	NA	NA	NA
VEE72874.1|3520044_3521709_+	asparagine synthetase B	NA	H8ZJK1	Ostreococcus_tauri_virus	39.4	2.3e-84
VEE72875.1|3523178_3524360_-	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase	NA	NA	NA	NA	NA
VEE72876.1|3524496_3526026_+|tRNA	(dimethylallyl)adenosine tRNA methylthiotransferase	tRNA	NA	NA	NA	NA
VEE72877.1|3526353_3527427_+	phosphate starvation-inducible ATPase PhoH with RNA binding motif	NA	A0A0S0MVD6	Pseudomonas_phage	44.7	1.6e-46
VEE72878.1|3527423_3527897_+|protease	putative metalloprotease	protease	NA	NA	NA	NA
3530003:3530019	attR	GGGGTGATTATGTTCAA	NA	NA	NA	NA
>prophage 11
LR134306	Yersinia pseudotuberculosis strain NCTC3571 genome assembly, chromosome: 1	4938759	3665579	3673043	4938759		Bacillus_phage(16.67%)	6	NA	NA
VEE73001.1|3665579_3666953_-	phosphomannomutase	NA	A0A127AWJ1	Bacillus_phage	29.1	4.8e-35
VEE73002.1|3667256_3668216_-	NAD-dependent epimerase/dehydratase	NA	A0A2D2W2D2	Stenotrophomonas_phage	29.3	4.7e-05
VEE73003.1|3668563_3669313_-	glycosyl transferase family protein	NA	A0A1V0SAH6	Catovirus	36.0	1.8e-07
VEE73004.1|3669347_3670736_-	mannose-1-phosphate guanylyltransferase	NA	A0A1V0SH58	Hokovirus	31.0	3.0e-53
VEE73005.1|3670950_3671916_-	GDP-L-fucose synthetase	NA	M1HWW2	Paramecium_bursaria_Chlorella_virus	47.9	1.6e-82
VEE73006.1|3671921_3673043_-	GDP-mannose 4,6-dehydratase	NA	M1HVG7	Acanthocystis_turfacea_Chlorella_virus	64.4	5.8e-132
>prophage 12
LR134306	Yersinia pseudotuberculosis strain NCTC3571 genome assembly, chromosome: 1	4938759	3723089	3749200	4938759	protease,head,plate,transposase,tail	Shigella_phage(29.63%)	33	NA	NA
VEE73050.1|3723089_3723440_+	Protein of uncharacterised function (DUF3486)	NA	M4MCT3	Vibrio_phage	36.3	2.1e-11
VEE73051.1|3723599_3724244_-	transcriptional repressor DicA	NA	NA	NA	NA	NA
VEE73052.1|3724396_3724627_+	putative transcriptional regulator Nlp	NA	A0A0M4UV99	Ralstonia_phage	57.6	9.1e-16
VEE73053.1|3724623_3724887_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE73054.1|3724828_3725008_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE73055.1|3725036_3727013_+|transposase	transposase	transposase	C9DGL1	Escherichia_phage	52.3	7.7e-196
VEE73056.1|3727026_3727842_+	XRE family transcriptional regulator	NA	M4M9P4	Vibrio_phage	48.8	2.3e-53
VEE73057.1|3727701_3727974_-	Mu B transposition protein, C terminal	NA	A0A2I7S9C3	Vibrio_phage	57.6	1.5e-17
VEE73058.1|3728207_3728429_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE73059.1|3728439_3729057_+	Protein of uncharacterised function (DUF3164)	NA	A0A2D1GNM4	Pseudomonas_phage	78.9	7.0e-87
VEE73060.1|3729058_3729250_+	Uncharacterised protein	NA	A0A2D1GNV5	Pseudomonas_phage	57.4	7.8e-13
VEE73061.1|3729327_3729882_+	Mu-like prophage protein gp16	NA	A0A0C4UQU3	Shigella_phage	36.1	6.8e-25
VEE73062.1|3729878_3730394_+	Uncharacterised protein	NA	F6MIJ5	Haemophilus_phage	46.9	2.7e-31
VEE73063.1|3730390_3730819_+	Uncharacterized conserved protein	NA	A0A0C4UQZ9	Shigella_phage	37.0	1.1e-14
VEE73064.1|3730922_3731429_+	Predicted lysozyme (DUF847)	NA	A0A2I7S9B9	Vibrio_phage	44.1	1.8e-32
VEE73065.1|3731428_3731602_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE73066.1|3731683_3733255_+	Mu-like prophage protein gp29	NA	A0A0C4UQR8	Shigella_phage	51.5	4.2e-144
VEE73067.1|3733238_3734561_+|head	phage head morphogenesis protein, SPP1 gp7 family	head	A0A0C4UQY9	Shigella_phage	48.5	6.3e-117
VEE73068.1|3734561_3735029_+	Mu-like prophage protein gpG	NA	C9DGN8	Escherichia_phage	42.9	2.1e-19
VEE73069.1|3735207_3736410_+	Mu-like prophage I protein	NA	C9DGP0	Escherichia_phage	43.3	2.1e-63
VEE73070.1|3736409_3736568_+|head	Mu-like prophage major head subunit gpT	head	C9DGP2	Escherichia_phage	58.0	2.8e-08
VEE73071.1|3736548_3737289_+|tail	putative bacteriophage tail sheath protein	tail	M4M9L9	Vibrio_phage	50.2	1.7e-55
VEE73072.1|3737439_3738756_+	putative bacteriophage protein	NA	A0A0C4UR32	Shigella_phage	34.8	1.2e-30
VEE73073.1|3738739_3739843_+	Mu P family protein	NA	C9DGQ3	Escherichia_phage	41.9	1.6e-73
VEE73074.1|3739833_3740388_+|plate	phage baseplate assembly protein V	plate	A0A0C4UQZ3	Shigella_phage	46.8	2.7e-37
VEE73075.1|3740384_3740825_+	putative bacteriophage protein GP46	NA	A0A0C4UR04	Shigella_phage	53.4	1.1e-33
VEE73076.1|3740825_3741905_+	putative bacteriophage protein	NA	A0A0C4UQU9	Shigella_phage	45.6	9.7e-84
VEE73077.1|3741895_3742480_+	bacteriophage protein GP48	NA	A0A2I7S9L6	Vibrio_phage	33.0	6.5e-26
VEE73078.1|3742482_3743337_+|tail	tail fiber repeat 2-containing protein	tail	C9DGQ8	Escherichia_phage	41.4	6.2e-25
VEE73079.1|3743346_3743859_+|tail	tail assembly chaperone gp38	tail	Q37843	Escherichia_phage	44.3	3.3e-26
VEE73080.1|3744168_3746055_-	chaperone	NA	NA	NA	NA	NA
VEE73081.1|3746355_3746628_-	transcriptional regulator HU subunit beta	NA	A4JWM7	Burkholderia_virus	59.6	3.5e-22
VEE73082.1|3746845_3749200_-|protease	DNA-binding ATP-dependent protease La	protease	A0A0R6PGP8	Moraxella_phage	52.9	4.5e-227
>prophage 13
LR134306	Yersinia pseudotuberculosis strain NCTC3571 genome assembly, chromosome: 1	4938759	4229919	4276785	4938759	transposase,terminase,integrase	Leptospira_phage(18.18%)	40	4268212:4268227	4277402:4277417
VEE73473.1|4229919_4230720_-|transposase	IS1400 transposase B	transposase	S5WIU1	Leptospira_phage	38.0	1.5e-44
VEE73474.1|4230740_4231007_-|transposase	putative transposase	transposase	NA	NA	NA	NA
VEE73475.1|4231305_4231638_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE73476.1|4231998_4235085_-	putative multi-drug efflux protein	NA	S5VL66	Leptospira_phage	19.0	7.0e-18
VEE73477.1|4235084_4236167_-	putative lipoprotein	NA	NA	NA	NA	NA
VEE73478.1|4236218_4236452_-	Uncharacterized integral membrane protein	NA	NA	NA	NA	NA
VEE73479.1|4237591_4238818_-	molybdopterin biosynthesis protein	NA	A0A291ATS8	Pandoravirus	31.9	7.6e-08
VEE73480.1|4238850_4239687_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE73481.1|4239688_4239964_-	sulfur transfer protein ThiS	NA	NA	NA	NA	NA
VEE73482.1|4239965_4241144_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
VEE73483.1|4241480_4242446_-	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	41.2	7.9e-53
VEE73484.1|4242811_4244038_-	putative O-antigen biosynthesis protein	NA	NA	NA	NA	NA
VEE73485.1|4244085_4245279_-	lipopolysaccharide biosynthesis protein	NA	NA	NA	NA	NA
VEE73486.1|4245577_4247170_-	autoinducer-2 (AI-2) kinase	NA	NA	NA	NA	NA
VEE73487.1|4247340_4248336_-	transcriptional repressor	NA	NA	NA	NA	NA
VEE73488.1|4248680_4250264_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.2	5.2e-25
VEE73489.1|4250257_4251313_+	putative ABC transporter permease	NA	NA	NA	NA	NA
VEE73490.1|4251309_4252311_+	autoinducer 2 import system permease LsrD	NA	NA	NA	NA	NA
VEE73491.1|4252425_4253445_+	LACI-type transcriptional regulator	NA	NA	NA	NA	NA
VEE73492.1|4253500_4254376_+	aldolase	NA	NA	NA	NA	NA
VEE73493.1|4254440_4254731_+	autoinducer-2 (AI-2) modifying protein LsrG	NA	NA	NA	NA	NA
VEE73494.1|4255053_4255545_+	putative glycoprotein/receptor precursor	NA	NA	NA	NA	NA
VEE73495.1|4255606_4258165_-	phosphoenolpyruvate-protein phosphotransferase	NA	A0A1V0SGR7	Hokovirus	27.3	1.4e-11
VEE73496.1|4258529_4259612_+	putative fructose-like permease EIIC subunit 2	NA	NA	NA	NA	NA
VEE73497.1|4259877_4260198_+	putative PTS system fructose-like transporter subunit EIIB	NA	NA	NA	NA	NA
VEE73498.1|4260290_4260635_+	putative PTS system fructose-like transporter subunit EIIB	NA	NA	NA	NA	NA
VEE73499.1|4260627_4261503_-	putative transcriptional regulator	NA	NA	NA	NA	NA
VEE73500.1|4261504_4262041_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE73501.1|4262746_4263943_+	thymidylate kinase	NA	NA	NA	NA	NA
VEE73502.1|4263971_4265018_+	M48 peptidase family protein	NA	NA	NA	NA	NA
VEE73503.1|4265198_4267952_+	type I restriction-modification system, M subunit	NA	A0A2H4PQP4	Staphylococcus_phage	40.7	7.7e-93
VEE73504.1|4267953_4269105_+	type I restriction enzyme, S subunit	NA	NA	NA	NA	NA
4268212:4268227	attL	ACAGTAGATACTCTTT	NA	NA	NA	NA
VEE73505.1|4269023_4269776_-|transposase	Putative transposase	transposase	Q716C2	Shigella_phage	74.2	2.5e-110
VEE73506.1|4269886_4270198_-|transposase	transposase and inactivated derivatives	transposase	Q716C1	Shigella_phage	73.2	2.1e-31
VEE73507.1|4270351_4273600_+	HsdR family type I site-specific deoxyribonuclease	NA	NA	NA	NA	NA
VEE73508.1|4273612_4273735_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE73509.1|4273880_4275116_-|integrase	integrase	integrase	Q7M297	Enterobacteria_phage	39.4	2.8e-79
VEE73510.1|4275552_4275924_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE73511.1|4275940_4276153_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE73512.1|4276182_4276785_-|terminase	phage terminase small subunit	terminase	A0A2R3UAN5	Myoviridae_environmental_samples	49.2	1.4e-39
4277402:4277417	attR	AAAGAGTATCTACTGT	NA	NA	NA	NA
>prophage 14
LR134306	Yersinia pseudotuberculosis strain NCTC3571 genome assembly, chromosome: 1	4938759	4458083	4506837	4938759	transposase,integrase,head	Vibrio_phage(25.0%)	49	4452698:4452711	4461633:4461646
4452698:4452711	attL	GTGCCATCCGCTTT	NA	NA	NA	NA
VEE73677.1|4458083_4458974_-|integrase	putative phage integrase	integrase	NA	NA	NA	NA
VEE73678.1|4460111_4461287_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE73679.1|4461352_4461619_+|transposase	putative transposase	transposase	NA	NA	NA	NA
VEE73680.1|4461639_4462440_+|transposase	IS1400 transposase B	transposase	S5WIU1	Leptospira_phage	38.0	1.5e-44
4461633:4461646	attR	AAAGCGGATGGCAC	NA	NA	NA	NA
VEE73681.1|4462638_4462935_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE73682.1|4462966_4464490_-	TraG-like protein, N-terminal region	NA	NA	NA	NA	NA
VEE73683.1|4464489_4465896_-	integrating conjugative element protein, PFL_4711 family	NA	NA	NA	NA	NA
VEE73684.1|4465916_4466870_-	integrating conjugative element protein, PFL_4710 family	NA	NA	NA	NA	NA
VEE73685.1|4466866_4467271_-	integrating conjugative element protein, PFL_4709 family	NA	NA	NA	NA	NA
VEE73686.1|4467861_4471683_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE73687.1|4472033_4472915_+	Transposase	NA	NA	NA	NA	NA
VEE73688.1|4473014_4473350_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE73689.1|4473349_4473472_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE73690.1|4473515_4474064_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE73691.1|4474142_4474370_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE73692.1|4474443_4475682_-	Transposase	NA	NA	NA	NA	NA
VEE73693.1|4476220_4477573_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE73694.1|4477986_4478115_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE73695.1|4478335_4480534_-	DEAD-box ATP-dependent RNA helicase CshB	NA	NA	NA	NA	NA
VEE73696.1|4480530_4481844_-	P-loop Domain of uncharacterised function (DUF2791)	NA	NA	NA	NA	NA
VEE73697.1|4481847_4484160_-	Tellurite resistance protein	NA	NA	NA	NA	NA
VEE73698.1|4484692_4487539_-	conjugal transfer ATPase TrbE	NA	NA	NA	NA	NA
VEE73699.1|4487538_4487940_-	putative lipoprotein	NA	NA	NA	NA	NA
VEE73700.1|4487952_4489470_-	integrating conjugative element protein, PFL_4705 family	NA	NA	NA	NA	NA
VEE73701.1|4489470_4490334_-	integrating conjugative element protein, PFL_4704 family	NA	NA	NA	NA	NA
VEE73702.1|4490330_4490984_-	integrating conjugative element protein, PFL_4703 family	NA	NA	NA	NA	NA
VEE73703.1|4490980_4491355_-	putative inner membrane protein	NA	NA	NA	NA	NA
VEE73704.1|4491364_4491715_-	integrating conjugative element membrane protein, PFL_4702 family	NA	NA	NA	NA	NA
VEE73705.1|4491730_4491976_-	integrating conjugative element protein, PFL_4701 family	NA	NA	NA	NA	NA
VEE73706.1|4491975_4492284_-	integrative conjugative element protein, RAQPRD family	NA	NA	NA	NA	NA
VEE73707.1|4492420_4492543_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE73708.1|4492802_4493111_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE73709.1|4493413_4493731_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE73710.1|4493848_4495654_-	Type IV secretory pathway, VirB4 components	NA	NA	NA	NA	NA
VEE73711.1|4495650_4496889_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE73712.1|4497009_4497762_-	putative inner membrane protein	NA	NA	NA	NA	NA
VEE73713.1|4497761_4499501_-	TraG-family protein	NA	NA	NA	NA	NA
VEE73714.1|4499443_4499872_-	TraG-family protein	NA	NA	NA	NA	NA
VEE73715.1|4499930_4500377_-	integrating conjugative element protein, PFL_4695 family	NA	NA	NA	NA	NA
VEE73716.1|4500520_4500871_+	Protein of uncharacterised function (DUF3486)	NA	M4MCT3	Vibrio_phage	36.3	2.1e-11
VEE73717.1|4501030_4501681_-	Helix-turn-helix	NA	A0A076FRF7	Pseudomonas_phage	47.0	1.6e-09
VEE73718.1|4501821_4502052_+	putative transcriptional regulator Nlp	NA	A0A0M4UV99	Ralstonia_phage	57.6	9.1e-16
VEE73719.1|4502048_4502312_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE73720.1|4502253_4502433_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE73721.1|4502461_4503298_+|transposase	transposase	transposase	M4M9R2	Vibrio_phage	39.1	3.6e-46
VEE73722.1|4503558_4504761_+	Mu-like prophage I protein	NA	C9DGP0	Escherichia_phage	43.3	2.1e-63
VEE73723.1|4504760_4505147_+|head	Mu-like prophage major head subunit gpT	head	A0A1C6ZDN1	Pseudomonas_phage	62.5	7.8e-36
VEE73724.1|4505245_4505602_+	DNA binding protein	NA	NA	NA	NA	NA
VEE73725.1|4505916_4506837_-|transposase	transposase	transposase	Q2A0A7	Sodalis_phage	52.2	2.3e-73
>prophage 15
LR134306	Yersinia pseudotuberculosis strain NCTC3571 genome assembly, chromosome: 1	4938759	4682508	4696905	4938759	transposase	Vibrio_phage(37.5%)	26	NA	NA
VEE73886.1|4682508_4683309_+	hemin importer ATP-binding subunit	NA	W5SAS9	Pithovirus	27.5	1.9e-15
VEE73887.1|4683733_4684084_+	Protein of uncharacterised function (DUF3486)	NA	M4MCT3	Vibrio_phage	36.3	2.1e-11
VEE73888.1|4684243_4684885_-	Helix-turn-helix	NA	NA	NA	NA	NA
VEE73889.1|4685042_4685273_+	putative transcriptional regulator Nlp	NA	A0A0M4UV99	Ralstonia_phage	57.6	9.1e-16
VEE73890.1|4685269_4685533_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE73891.1|4685411_4685654_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE73892.1|4685682_4687656_+|transposase	transposase	transposase	A0A2I7S9A8	Vibrio_phage	52.4	1.3e-198
VEE73893.1|4687669_4688626_+	XRE family transcriptional regulator	NA	M4M9P4	Vibrio_phage	51.1	1.6e-82
VEE73894.1|4688622_4688847_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE73895.1|4688850_4689072_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE73896.1|4689082_4689700_+	Protein of uncharacterised function (DUF3164)	NA	A0A2D1GNM4	Pseudomonas_phage	78.9	7.0e-87
VEE73897.1|4689701_4689893_+	Uncharacterised protein	NA	A0A2D1GNV5	Pseudomonas_phage	57.4	7.8e-13
VEE73898.1|4689970_4690525_+	Mu-like prophage protein gp16	NA	A0A0C4UQU3	Shigella_phage	36.1	6.8e-25
VEE73899.1|4690521_4691037_+	Uncharacterised protein	NA	F6MIJ5	Haemophilus_phage	46.9	2.7e-31
VEE73900.1|4691033_4691462_+	Uncharacterized conserved protein	NA	A0A0C4UQZ9	Shigella_phage	37.0	1.1e-14
VEE73901.1|4691565_4692072_+	Predicted lysozyme (DUF847)	NA	A0A2I7S9B9	Vibrio_phage	44.1	1.8e-32
VEE73902.1|4692071_4692371_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE73903.1|4692360_4692594_+	Uncharacterised protein	NA	A0A2D1GNW8	Pseudomonas_phage	51.4	4.0e-11
VEE73904.1|4692586_4693180_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE73905.1|4693179_4693404_+	phage/conjugal plasmid C-4 type zinc finger protein, TraR family	NA	NA	NA	NA	NA
VEE73906.1|4693387_4693690_+	Protein of uncharacterised function (DUF2730)	NA	NA	NA	NA	NA
VEE73907.1|4693692_4693980_+	Uncharacterised protein	NA	A0A0C4UR00	Shigella_phage	60.6	2.7e-25
VEE73908.1|4693981_4694254_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE73909.1|4694246_4694819_+	Protein of uncharacterised function (DUF3486)	NA	M4MCR3	Vibrio_phage	63.9	1.1e-57
VEE73910.1|4694818_4696381_+	Mu-like prophage FluMu protein gp28	NA	A0A2I7S9C5	Vibrio_phage	61.3	2.0e-162
VEE73911.1|4696383_4696905_+	Mu-like prophage protein gp29	NA	A0A0C4UQR8	Shigella_phage	52.9	1.6e-31
