assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900636665.1_43781_G01	LR134303	Shewanella putrefaciens strain NCTC12093 genome assembly, chromosome: 1	1	972053-972187	1	CRISPRCasFinder	no		DEDDh,DinG,WYL,RT,cas3,csa3,csx1,cas2,cas1,csx16,cas6,csm3gr7,csx10gr5,cas10	Orphan	AACAAAACCGGACACCCAACCTCAATAGCGCGGTAGCTAACCTC	44	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,WYL,RT,cas3,csa3,csx1,cas2,cas1,csx16,cas6,csm3gr7,csx10gr5,cas10	NA|158aa|up_5|LR134303.1_963802_964276_-,NA|766aa|up_1|LR134303.1_969078_971376_+,NA|149aa|up_0|LR134303.1_971561_972008_+,NA|326aa|down_0|LR134303.1_972247_973225_+,NA|141aa|down_2|LR134303.1_974970_975393_+,NA|238aa|down_3|LR134303.1_976082_976796_-,NA|49aa|down_4|LR134303.1_976926_977073_+,NA|345aa|down_6|LR134303.1_977711_978746_+	NA|336aa|up_9|LR134303.1_959188_960196_+	COG4150, CysP, ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|282aa|up_8|LR134303.1_960379_961225_+	TIGR02139, permease_CysT, sulfate ABC transporter, permease protein CysT	NA|290aa|up_7|LR134303.1_961234_962104_+	COG4208, CysW, ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]	NA|377aa|up_6|LR134303.1_962100_963231_+	COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]	NA|158aa|up_5|LR134303.1_963802_964276_-	NA	NA|523aa|up_4|LR134303.1_964493_966062_-	CHL00195, ycf46, Ycf46; Provisional	NA|392aa|up_3|LR134303.1_966197_967373_+	PRK09288, purT, formate-dependent phosphoribosylglycinamide formyltransferase	NA|505aa|up_2|LR134303.1_967574_969089_+	pfam11340, DUF3142, Protein of unknown function (DUF3142)	NA|766aa|up_1|LR134303.1_969078_971376_+	NA	NA|149aa|up_0|LR134303.1_971561_972008_+	NA	NA|326aa|down_0|LR134303.1_972247_973225_+	NA	NA|463aa|down_1|LR134303.1_973561_974950_+	TIGR03696, tRNA_nuclease_WapA, RHS repeat-associated core domain	NA|141aa|down_2|LR134303.1_974970_975393_+	NA	NA|238aa|down_3|LR134303.1_976082_976796_-	NA	NA|49aa|down_4|LR134303.1_976926_977073_+	NA	NA|59aa|down_5|LR134303.1_977194_977371_-	cd00801, INT_P4_C, Bacteriophage P4 integrase, C-terminal catalytic domain	NA|345aa|down_6|LR134303.1_977711_978746_+	NA	NA|123aa|down_7|LR134303.1_979253_979622_-	TIGR02794, Protein_TolA, TolA protein	NA|319aa|down_8|LR134303.1_979639_980596_-	cd12162, 2-Hacid_dh_4, Putative D-isomer specific 2-hydroxyacid dehydrogenases	NA|215aa|down_9|LR134303.1_980641_981286_-	pfam13505, OMP_b-brl, Outer membrane protein beta-barrel domain
GCA_900636665.1_43781_G01	LR134303	Shewanella putrefaciens strain NCTC12093 genome assembly, chromosome: 1	3	4614027-4616302	3,1,1	CRISPRCasFinder,CRT,PILER-CR	no	csx1,cas2,cas1,DinG,csx16,cas6,csm3gr7	DEDDh,DinG,WYL,RT,cas3,csa3,csx1,cas2,cas1,csx16,cas6,csm3gr7,csx10gr5,cas10	Type III-A	GTCTTAATCCCCTTAAATGGCGGGGCGTCTTTCAGAG,GTCTTAATCCCCTTAAATGGCGGGGCGTCTTTCAGAG,GTCTTAATCCCCTTAAATGGCGGGGCGTCTTTCAGAG	37,37,37	0	0	NA	NA	NA:NA:NA	32,32,28	32	TypeIII-A	DEDDh,DinG,WYL,RT,cas3,csa3,csx1,cas2,cas1,csx16,cas6,csm3gr7,csx10gr5,cas10	NA|193aa|up_5|LR134303.1_4604762_4605341_+,NA|846aa|up_4|LR134303.1_4605337_4607875_+,NA|232aa|up_2|LR134303.1_4611135_4611831_-,NA|97aa|down_6|LR134303.1_4621864_4622155_-	NA|363aa|up_9|LR134303.1_4599258_4600347_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|148aa|up_8|LR134303.1_4600414_4600858_-	COG4925, COG4925, Uncharacterized conserved protein [Function unknown]	NA|393aa|up_7|LR134303.1_4600874_4602053_-	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|386aa|up_6|LR134303.1_4602594_4603752_+	COG1979, COG1979, Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]	NA|193aa|up_5|LR134303.1_4604762_4605341_+	NA	NA|846aa|up_4|LR134303.1_4605337_4607875_+	NA	NA|1035aa|up_3|LR134303.1_4607844_4610949_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|232aa|up_2|LR134303.1_4611135_4611831_-	NA	csx1|429aa|up_1|LR134303.1_4611866_4613153_-	cd09686, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	NA|226aa|up_0|LR134303.1_4613172_4613850_-	pfam14487, DUF4433, Domain of unknown function (DUF4433)	cas2|106aa|down_0|LR134303.1_4616439_4616757_-	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2	cas1|320aa|down_1|LR134303.1_4616743_4617703_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas2|93aa|down_2|LR134303.1_4617706_4617985_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|341aa|down_3|LR134303.1_4618008_4619031_-	COG4643, COG4643, Uncharacterized protein conserved in bacteria [Function unknown]	NA|196aa|down_4|LR134303.1_4619031_4619619_-	PRK06863, PRK06863, single-stranded DNA-binding protein; Provisional	DinG|744aa|down_5|LR134303.1_4619619_4621851_-	PRK11747, dinG, ATP-dependent DNA helicase DinG; Provisional	NA|97aa|down_6|LR134303.1_4621864_4622155_-	NA	csx16|101aa|down_7|LR134303.1_4622462_4622765_-	pfam09652, Cas_VVA1548, Putative CRISPR-associated protein (Cas_VVA1548)	NA|263aa|down_8|LR134303.1_4622761_4623550_-	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)	NA|294aa|down_9|LR134303.1_4623549_4624431_-	COG3596, COG3596, Predicted GTPase [General function prediction only]
GCA_900636665.1_43781_G01	LR134303	Shewanella putrefaciens strain NCTC12093 genome assembly, chromosome: 1	4	4625297-4626449	4,2,2	CRISPRCasFinder,CRT,PILER-CR	no	csx1,cas2,cas1,DinG,csx16,cas6,csm3gr7,csx10gr5,cas10,WYL	DEDDh,DinG,WYL,RT,cas3,csa3,csx1,cas2,cas1,csx16,cas6,csm3gr7,csx10gr5,cas10	Type III-A,Type III-C,Type III-D,Type III-B	GTCTTAATCCCCTTAAATGGCGGGGCGTCTTTCAGAG,GTCTTAATCCCCTTAAATGGCGGGGCGTCTTTCAGAG,GTCTTAATCCCCTTAAATGGCGGGGCGTCTTTCAGAG	37,37,37	0	0	NA	NA	NA:NA:NA	16,16,15	16	TypeIII-A,TypeIII-C,TypeIII-D,TypeIII-B	DEDDh,DinG,WYL,RT,cas3,csa3,csx1,cas2,cas1,csx16,cas6,csm3gr7,csx10gr5,cas10	NA|97aa|up_4|LR134303.1_4621864_4622155_-,NA|169aa|down_0|LR134303.1_4626828_4627335_-,NA|174aa|down_5|LR134303.1_4633484_4634006_-,cas10|575aa|down_9|LR134303.1_4637549_4639274_-	cas1|320aa|up_9|LR134303.1_4616743_4617703_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas2|93aa|up_8|LR134303.1_4617706_4617985_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|341aa|up_7|LR134303.1_4618008_4619031_-	COG4643, COG4643, Uncharacterized protein conserved in bacteria [Function unknown]	NA|196aa|up_6|LR134303.1_4619031_4619619_-	PRK06863, PRK06863, single-stranded DNA-binding protein; Provisional	DinG|744aa|up_5|LR134303.1_4619619_4621851_-	PRK11747, dinG, ATP-dependent DNA helicase DinG; Provisional	NA|97aa|up_4|LR134303.1_4621864_4622155_-	NA	csx16|101aa|up_3|LR134303.1_4622462_4622765_-	pfam09652, Cas_VVA1548, Putative CRISPR-associated protein (Cas_VVA1548)	NA|263aa|up_2|LR134303.1_4622761_4623550_-	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)	NA|294aa|up_1|LR134303.1_4623549_4624431_-	COG3596, COG3596, Predicted GTPase [General function prediction only]	NA|113aa|up_0|LR134303.1_4624494_4624833_-	COG3339, COG3339, Uncharacterized conserved protein [Function unknown]	NA|169aa|down_0|LR134303.1_4626828_4627335_-	NA	csx1|424aa|down_1|LR134303.1_4627641_4628913_-	cd09741, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	csx1|398aa|down_2|LR134303.1_4629041_4630235_-	pfam09002, DUF1887, Domain of unknown function (DUF1887)	cas6|293aa|down_3|LR134303.1_4630313_4631192_-	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6	csm3gr7|765aa|down_4|LR134303.1_4631188_4633483_-	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein	NA|174aa|down_5|LR134303.1_4633484_4634006_-	NA	csm3gr7|470aa|down_6|LR134303.1_4634009_4635419_-	pfam03787, RAMPs, RAMP superfamily	csx10gr5|511aa|down_7|LR134303.1_4635421_4636954_-	TIGR02674, cas_cyan_RAMP_2, CRISPR-associated RAMP protein, Csx10 family	csm3gr7|200aa|down_8|LR134303.1_4636953_4637553_-	pfam03787, RAMPs, RAMP superfamily	cas10|575aa|down_9|LR134303.1_4637549_4639274_-	NA
