The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR134303	Shewanella putrefaciens strain NCTC12093 genome assembly, chromosome: 1	5049396	1915328	1927825	5049396		Bacillus_phage(33.33%)	8	NA	NA
VEE61951.1|1915328_1920212_-	Signal transduction histidine-protein kinase BarA	NA	A0A1V0SGX0	Hokovirus	30.6	2.9e-66
VEE61952.1|1920580_1921306_+	Transcriptional regulatory protein OmpR	NA	W8CYM9	Bacillus_phage	34.7	4.9e-31
VEE61953.1|1921345_1922662_+	Osmolarity sensor protein EnvZ	NA	W8CYF6	Bacillus_phage	22.5	7.8e-11
VEE61954.1|1922778_1924755_+	H3	NA	A0A2H4J162	uncultured_Caudovirales_phage	54.3	6.0e-15
VEE61955.1|1924811_1925285_-	Hybrid peroxiredoxin hyPrx5	NA	M1I839	Pelagibacter_phage	49.1	1.4e-23
VEE61956.1|1925546_1926479_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE61957.1|1926837_1927140_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE61958.1|1927141_1927825_+	Transcriptional regulatory protein phoP	NA	Q6XM27	Feldmannia_irregularis_virus	26.5	1.4e-06
>prophage 2
LR134303	Shewanella putrefaciens strain NCTC12093 genome assembly, chromosome: 1	5049396	3469263	3476707	5049396		Staphylococcus_phage(50.0%)	7	NA	NA
VEE63268.1|3469263_3470931_-	Uncharacterized ABC transporter ATP-binding protein HI_1252	NA	A0A1V0SKJ1	Klosneuvirus	27.6	8.6e-39
VEE63269.1|3471121_3472375_+	Pyridoxal-phosphate-dependent serine hydroxymethyltransferase	NA	A0A219Y950	Aeromonas_phage	53.1	4.6e-101
VEE63270.1|3472585_3473035_+	Transcriptional repressor NrdR	NA	NA	NA	NA	NA
VEE63271.1|3473110_3474256_+	Riboflavin biosynthesis protein RibD	NA	A0A1V0SE20	Indivirus	34.9	5.7e-50
VEE63272.1|3474263_3474920_+	Riboflavin synthase alpha chain	NA	A0A2H4PQS5	Staphylococcus_phage	34.0	8.7e-27
VEE63273.1|3474987_3476091_+	Riboflavin biosynthesis protein ribBA	NA	A0A2H4PQS2	Staphylococcus_phage	39.7	5.8e-68
VEE63274.1|3476230_3476707_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	45.7	1.0e-29
>prophage 3
LR134303	Shewanella putrefaciens strain NCTC12093 genome assembly, chromosome: 1	5049396	3498282	3510042	5049396	tRNA	uncultured_Mediterranean_phage(28.57%)	11	NA	NA
VEE63291.1|3498282_3499578_+	Enolase	NA	A0A1X9I5Z8	Streptococcus_phage	58.7	4.0e-132
VEE63292.1|3499621_3499978_+	Cell division protein FtsB	NA	NA	NA	NA	NA
VEE63293.1|3499988_3500738_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
VEE63294.1|3500789_3501269_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
VEE63295.1|3501298_3502426_+|tRNA	tRNA pseudouridine synthase D	tRNA	NA	NA	NA	NA
VEE63296.1|3502422_3503172_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	52.7	5.9e-72
VEE63297.1|3503168_3503804_+	Protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	51.2	9.9e-36
VEE63298.1|3503902_3504799_+	Murein hydrolase activator NlpD precursor	NA	I3PV79	Clostridium_phage	31.0	2.6e-10
VEE63299.1|3504879_3505860_+	RNA polymerase sigma factor rpoS	NA	F4YCU2	Synechococcus_phage	32.9	1.4e-33
VEE63300.1|3506000_3508586_-	DNA mismatch repair protein mutS	NA	A0A1V0SC35	Catovirus	23.1	2.5e-29
VEE63301.1|3508968_3510042_+	Recombinase A	NA	A0A2D1GPX2	Mycobacterium_phage	62.2	2.9e-112
>prophage 4
LR134303	Shewanella putrefaciens strain NCTC12093 genome assembly, chromosome: 1	5049396	4687569	4698866	5049396	tRNA,protease	uncultured_Caudovirales_phage(28.57%)	12	NA	NA
VEE64310.1|4687569_4690314_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	47.7	4.2e-83
VEE64311.1|4690383_4691004_+	P20	NA	NA	NA	NA	NA
VEE64312.1|4691012_4692344_+	Replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	39.6	1.4e-76
VEE64313.1|4692336_4692711_+	camphor resistance protein CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	37.4	3.5e-09
VEE64314.1|4692729_4694016_+|tRNA	Serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	45.3	9.8e-99
VEE64315.1|4694224_4694563_-	Sulfurtransferase TusE	NA	NA	NA	NA	NA
VEE64316.1|4694556_4694838_-|tRNA	tRNA 2-thiouridine synthesizing protein B	tRNA	NA	NA	NA	NA
VEE64317.1|4694837_4695194_-|tRNA	tRNA 2-thiouridine synthesizing protein C	tRNA	NA	NA	NA	NA
VEE64318.1|4695208_4695601_-	Sulfurtransferase TusD	NA	A0A2H4JA39	uncultured_Caudovirales_phage	43.3	1.5e-21
VEE64319.1|4695657_4696317_-|protease	Modulator of FtsH protease YccA	protease	A0A2H4JFM9	uncultured_Caudovirales_phage	44.3	1.1e-34
VEE64320.1|4696576_4697479_-	HTH-type transcriptional activator AllS	NA	NA	NA	NA	NA
VEE64321.1|4697594_4698866_+	Inner membrane transport protein ydhC	NA	S4TR35	Salmonella_phage	22.8	2.9e-18
>prophage 5
LR134303	Shewanella putrefaciens strain NCTC12093 genome assembly, chromosome: 1	5049396	4943792	4954010	5049396		Yellowstone_lake_phycodnavirus(12.5%)	13	NA	NA
VEE64539.1|4943792_4945511_+	Acetolactate synthase isozyme 3 large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	30.2	2.8e-56
VEE64540.1|4945510_4946005_+	Acetolactate synthase isozyme 3 small subunit	NA	NA	NA	NA	NA
VEE64541.1|4946137_4946581_-	16 kDa heat shock protein A	NA	A0A2L0V0Y9	Agrobacterium_phage	49.5	1.8e-20
VEE64542.1|4946884_4947316_-	Nucleoside diphosphate kinase	NA	K7YW26	Megavirus	40.9	2.8e-18
VEE64543.1|4947536_4947704_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE64544.1|4947901_4948099_-	FeS assembly protein IscX	NA	NA	NA	NA	NA
VEE64545.1|4948167_4949067_-	Alpha-aminoadipate--lysW ligase lysX	NA	I3ULC9	Synechococcus_phage	33.2	3.2e-40
VEE64546.1|4949222_4949558_-	2Fe-2S ferredoxin	NA	NA	NA	NA	NA
VEE64547.1|4949566_4951429_-	Hsc66	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	39.0	5.0e-104
VEE64548.1|4951496_4952021_-	Co-chaperone protein hscB homolog	NA	NA	NA	NA	NA
VEE64549.1|4952036_4952360_-	Iron-sulfur cluster assembly protein	NA	A0A2H4N7N5	Lake_Baikal_phage	43.0	4.1e-22
VEE64550.1|4952374_4952758_-	NifU-like protein	NA	A0A218MKD1	uncultured_virus	77.4	1.0e-51
VEE64551.1|4952795_4954010_-	Cysteine desulfurase	NA	A0A0H3TPH2	Faustovirus	31.1	6.7e-33
