assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900636655.1_43781_D01	LR134301	Stenotrophomonas maltophilia strain NCTC13014 genome assembly, chromosome: 1	1	615163-615264	1	CRISPRCasFinder	no	csa3,DEDDh	DinG,Cas9_archaeal,csa3,DEDDh,cas3,WYL	Type I-A	GGTAGTTGCCAACCTTGGTTGGCGC	25	0	0	NA	NA	NA	1	1	Orphan	DinG,Cas9_archaeal,csa3,DEDDh,cas3,WYL	NA|97aa|up_6|LR134301.1_602376_602667_+,NA|105aa|down_8|LR134301.1_622797_623112_-,NA|100aa|down_9|LR134301.1_623119_623419_-	NA|365aa|up_9|LR134301.1_598906_600001_-	PRK09490, metH, B12-dependent methionine synthase; Provisional	csa3|310aa|up_8|LR134301.1_600014_600944_-	pfam08241, Methyltransf_11, Methyltransferase domain	NA|383aa|up_7|LR134301.1_601097_602246_+	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|97aa|up_6|LR134301.1_602376_602667_+	NA	NA|1058aa|up_5|LR134301.1_602842_606016_-	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family	NA|423aa|up_4|LR134301.1_606031_607300_-	PRK09578, PRK09578, MexX/AxyX family multidrug efflux RND transporter periplasmic adaptor subunit	NA|219aa|up_3|LR134301.1_607299_607956_-	pfam14246, TetR_C_7, AefR-like transcriptional repressor, C-terminal region	NA|1659aa|up_2|LR134301.1_608206_613183_+	pfam05088, Bac_GDH, Bacterial NAD-glutamate dehydrogenase	NA|258aa|up_1|LR134301.1_613391_614165_+	PRK04761, ppnK, inorganic polyphosphate/ATP-NAD kinase; Reviewed	NA|315aa|up_0|LR134301.1_614212_615157_+	pfam06189, 5-nucleotidase, 5'-nucleotidase	NA|184aa|down_0|LR134301.1_615331_615883_-	pfam11159, DUF2939, Protein of unknown function (DUF2939)	NA|229aa|down_1|LR134301.1_615938_616625_-	TIGR02453, conserved_hypothetical_protein, TIGR02453 family protein	DEDDh|480aa|down_2|LR134301.1_616621_618061_-	PRK11779, sbcB, exonuclease I; Provisional	NA|456aa|down_3|LR134301.1_618060_619428_-	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]	NA|425aa|down_4|LR134301.1_619459_620734_-	TIGR01814, kynureninase, kynureninase	NA|174aa|down_5|LR134301.1_620872_621394_-	PRK13264, PRK13264, 3-hydroxyanthranilate 3,4-dioxygenase; Provisional	NA|221aa|down_6|LR134301.1_621414_622077_-	cd00883, beta_CA_cladeA, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site	NA|213aa|down_7|LR134301.1_622151_622790_-	pfam04299, FMN_bind_2, Putative FMN-binding domain	NA|105aa|down_8|LR134301.1_622797_623112_-	NA	NA|100aa|down_9|LR134301.1_623119_623419_-	NA
GCA_900636655.1_43781_D01	LR134301	Stenotrophomonas maltophilia strain NCTC13014 genome assembly, chromosome: 1	2	2482609-2482698	2	CRISPRCasFinder	no		DinG,Cas9_archaeal,csa3,DEDDh,cas3,WYL	Orphan	CCAACCAAGGTTGGCACCCACCA	23	0	0	NA	NA	NA	1	1	Orphan	DinG,Cas9_archaeal,csa3,DEDDh,cas3,WYL	NA|89aa|up_2|LR134301.1_2480842_2481109_+,NA	NA|151aa|up_9|LR134301.1_2474124_2474577_+	pfam00359, PTS_EIIA_2, Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2	NA|317aa|up_8|LR134301.1_2474573_2475524_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|295aa|up_7|LR134301.1_2475551_2476436_+	PRK05416, PRK05416, RNase adapter RapZ	NA|131aa|up_6|LR134301.1_2476857_2477250_+	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|90aa|up_5|LR134301.1_2477242_2477512_+	TIGR01003, Phosphocarrier_protein_HPr, Phosphotransferase System HPr (HPr) Family	NA|590aa|up_4|LR134301.1_2477514_2479284_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|454aa|up_3|LR134301.1_2479417_2480779_+	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]	NA|89aa|up_2|LR134301.1_2480842_2481109_+	NA	NA|266aa|up_1|LR134301.1_2481180_2481978_+	COG4099, COG4099, Predicted peptidase [General function prediction only]	NA|168aa|up_0|LR134301.1_2482047_2482551_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|317aa|down_0|LR134301.1_2482704_2483655_-	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit	NA|165aa|down_1|LR134301.1_2483671_2484166_-	PRK00109, PRK00109, Holliday junction resolvase RuvX	NA|189aa|down_2|LR134301.1_2484158_2484725_-	PRK00228, PRK00228, YqgE/AlgH family protein	NA|596aa|down_3|LR134301.1_2484816_2486604_+	pfam13687, DUF4153, Domain of unknown function (DUF4153)	NA|181aa|down_4|LR134301.1_2486600_2487143_+	COG2818, Tag, 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]	NA|252aa|down_5|LR134301.1_2487216_2487972_-	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|71aa|down_6|LR134301.1_2488034_2488247_-	pfam14117, DUF4287, Domain of unknown function (DUF4287)	NA|342aa|down_7|LR134301.1_2488447_2489473_+	cd08474, PBP2_CrgA_like_5, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|328aa|down_8|LR134301.1_2489535_2490519_-	cd19078, AKR_AKR13C1_2, AKR13C family of aldo-keto reductase (AKR)	NA|388aa|down_9|LR134301.1_2490726_2491890_-	COG5008, PilU, Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
GCA_900636655.1_43781_D01	LR134301	Stenotrophomonas maltophilia strain NCTC13014 genome assembly, chromosome: 1	3	3039799-3039942	3	CRISPRCasFinder	no		DinG,Cas9_archaeal,csa3,DEDDh,cas3,WYL	Orphan	GCCGACCAAGGTCGGCCGCTACCAGAGCCGCGCATGGCGACCGCTGC	47	0	0	NA	NA	NA	1	1	Orphan	DinG,Cas9_archaeal,csa3,DEDDh,cas3,WYL	NA|88aa|up_3|LR134301.1_3036311_3036575_+,NA|52aa|down_3|LR134301.1_3043072_3043228_-,NA|163aa|down_8|LR134301.1_3046365_3046854_+	NA|365aa|up_9|LR134301.1_3030498_3031593_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|172aa|up_8|LR134301.1_3031784_3032300_+	PRK05174, PRK05174, bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA|403aa|up_7|LR134301.1_3032299_3033508_+	PRK07967, PRK07967, beta-ketoacyl-ACP synthase I	NA|228aa|up_6|LR134301.1_3033712_3034396_-	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only]	NA|234aa|up_5|LR134301.1_3034392_3035094_-	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like	NA|355aa|up_4|LR134301.1_3035090_3036155_-	pfam05175, MTS, Methyltransferase small domain	NA|88aa|up_3|LR134301.1_3036311_3036575_+	NA	NA|98aa|up_2|LR134301.1_3036645_3036939_-	pfam11607, DUF3247, Protein of unknown function (DUF3247)	NA|663aa|up_1|LR134301.1_3036959_3038948_-	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional	NA|188aa|up_0|LR134301.1_3039192_3039756_+	pfam11454, DUF3016, Protein of unknown function (DUF3016)	NA|356aa|down_0|LR134301.1_3040037_3041105_-	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases	NA|435aa|down_1|LR134301.1_3041083_3042388_-	PRK00711, PRK00711, D-amino acid dehydrogenase	NA|160aa|down_2|LR134301.1_3042537_3043017_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|52aa|down_3|LR134301.1_3043072_3043228_-	NA	NA|125aa|down_4|LR134301.1_3043399_3043774_-	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|156aa|down_5|LR134301.1_3043914_3044382_+	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|285aa|down_6|LR134301.1_3044473_3045328_+	PRK09110, PRK09110, flagellar motor stator protein MotA	NA|313aa|down_7|LR134301.1_3045331_3046270_+	PRK09041, motB, motility protein MotB	NA|163aa|down_8|LR134301.1_3046365_3046854_+	NA	NA|92aa|down_9|LR134301.1_3046867_3047143_+	pfam13223, DUF4031, Protein of unknown function (DUF4031)
GCA_900636655.1_43781_D01	LR134301	Stenotrophomonas maltophilia strain NCTC13014 genome assembly, chromosome: 1	4	3423848-3423954	4	CRISPRCasFinder	no		DinG,Cas9_archaeal,csa3,DEDDh,cas3,WYL	Orphan	GTGCCGACCGACGGTCGGCACCCAC	25	0	0	NA	NA	NA	1	1	Orphan	DinG,Cas9_archaeal,csa3,DEDDh,cas3,WYL	NA|294aa|up_5|LR134301.1_3418892_3419774_+,NA|130aa|up_4|LR134301.1_3420084_3420474_+,NA|94aa|up_3|LR134301.1_3420704_3420986_-,NA|105aa|up_2|LR134301.1_3421345_3421660_-,NA	NA|489aa|up_9|LR134301.1_3410037_3411504_+	pfam07693, KAP_NTPase, KAP family P-loop domain	NA|437aa|up_8|LR134301.1_3413487_3414798_-	pfam06527, TniQ, TniQ	NA|334aa|up_7|LR134301.1_3414865_3415867_-	cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold	NA|807aa|up_6|LR134301.1_3415866_3418287_-	pfam00665, rve, Integrase core domain	NA|294aa|up_5|LR134301.1_3418892_3419774_+	NA	NA|130aa|up_4|LR134301.1_3420084_3420474_+	NA	NA|94aa|up_3|LR134301.1_3420704_3420986_-	NA	NA|105aa|up_2|LR134301.1_3421345_3421660_-	NA	NA|392aa|up_1|LR134301.1_3421744_3422920_-	COG2821, MltA, Membrane-bound lytic murein transglycosylase [Cell envelope biogenesis, outer membrane]	NA|249aa|up_0|LR134301.1_3422987_3423734_-	COG3023, ampD, N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]	NA|477aa|down_0|LR134301.1_3423983_3425414_-	PRK10666, PRK10666, ammonium transporter AmtB	NA|113aa|down_1|LR134301.1_3425436_3425775_-	COG0347, GlnK, Nitrogen regulatory protein PII [Amino acid transport and metabolism]	NA|470aa|down_2|LR134301.1_3426122_3427532_-	PRK09469, glnA, glutamate--ammonia ligase	NA|265aa|down_3|LR134301.1_3427756_3428551_+	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase	NA|275aa|down_4|LR134301.1_3428624_3429449_+	pfam14302, DUF4377, Domain of unknown function (DUF4377)	NA|204aa|down_5|LR134301.1_3429601_3430213_-	cd00865, PEBP_bact_arch, PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea	NA|690aa|down_6|LR134301.1_3430223_3432293_-	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|345aa|down_7|LR134301.1_3432349_3433384_-	COG0429, COG0429, Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]	NA|264aa|down_8|LR134301.1_3433391_3434183_-	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|145aa|down_9|LR134301.1_3434304_3434739_-	PRK10293, PRK10293, 1,4-dihydroxy-2-naphthoyl-CoA hydrolase
GCA_900636655.1_43781_D01	LR134301	Stenotrophomonas maltophilia strain NCTC13014 genome assembly, chromosome: 1	5	4267685-4267762	5	CRISPRCasFinder	no		DinG,Cas9_archaeal,csa3,DEDDh,cas3,WYL	Orphan	GCTCTGGTGGGTGCCGACCTTGGT	24	0	0	NA	NA	NA	1	1	Orphan	DinG,Cas9_archaeal,csa3,DEDDh,cas3,WYL	NA,NA|144aa|down_0|LR134301.1_4267858_4268290_-,NA|113aa|down_2|LR134301.1_4269741_4270080_+,NA|79aa|down_7|LR134301.1_4272950_4273187_-	NA|125aa|up_9|LR134301.1_4251515_4251890_+	COG5652, COG5652, Predicted integral membrane protein [Function unknown]	NA|786aa|up_8|LR134301.1_4252007_4254365_-	cd06563, GH20_chitobiase-like, The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin	NA|888aa|up_7|LR134301.1_4254476_4257140_-	TIGR01782, TonB-dependent_receptor, TonB-dependent receptor	NA|340aa|up_6|LR134301.1_4257316_4258336_-	PRK12408, PRK12408, glucokinase; Provisional	NA|430aa|up_5|LR134301.1_4258711_4260001_+	cd17394, MFS_FucP_like, Fucose permease and similar proteins of the Major Facilitator Superfamily of transporters	NA|356aa|up_4|LR134301.1_4260040_4261108_+	cd01545, PBP1_SalR, ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators	NA|343aa|up_3|LR134301.1_4261115_4262144_+	COG2222, AgaS, Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane]	NA|383aa|up_2|LR134301.1_4262143_4263292_+	COG1820, NagA, N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]	NA|356aa|up_1|LR134301.1_4263291_4264359_+	COG4299, COG4299, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1009aa|up_0|LR134301.1_4264633_4267660_+	cd01344, PL2_Passenger_AT, Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 2, of autotransporter proteins of the type V secretion system of Gram-negative bacteria	NA|144aa|down_0|LR134301.1_4267858_4268290_-	NA	NA|348aa|down_1|LR134301.1_4268701_4269745_+	pfam03572, Peptidase_S41, Peptidase family S41	NA|113aa|down_2|LR134301.1_4269741_4270080_+	NA	NA|101aa|down_3|LR134301.1_4270129_4270432_+	pfam09907, HigB_toxin, HigB_toxin, RelE-like toxic component of a toxin-antitoxin system	NA|120aa|down_4|LR134301.1_4270428_4270788_+	COG5499, COG5499, Predicted transcription regulator containing HTH domain [Transcription]	NA|145aa|down_5|LR134301.1_4270875_4271310_+	pfam07179, SseB, SseB protein N-terminal domain	NA|407aa|down_6|LR134301.1_4271657_4272878_-	PRK10885, cca, multifunctional CCA addition/repair protein	NA|79aa|down_7|LR134301.1_4272950_4273187_-	NA	NA|658aa|down_8|LR134301.1_4273253_4275227_-	PRK11619, PRK11619, lytic murein transglycosylase; Provisional	NA|136aa|down_9|LR134301.1_4275390_4275798_+	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion]
