The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR134299	Pseudomonas putida strain NCTC13186 genome assembly, chromosome: 1	6134366	1087673	1095452	6134366		Thermobifida_phage(16.67%)	10	NA	NA
VEE39664.1|1087673_1088528_-	glmZ(sRNA)-inactivating NTPase	NA	A0A0R8VB27	Thermobifida_phage	32.8	8.1e-09
VEE39665.1|1088530_1088995_-	phosphotransferase system, nitrogen regulatory IIA protein	NA	NA	NA	NA	NA
VEE39666.1|1089007_1089316_-	sigma N (sigma 54) modulator RpoX	NA	A0A0K1LP60	Escherichia_phage	34.1	4.4e-05
VEE39667.1|1089395_1090865_-	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
VEE39668.1|1091064_1091790_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.5	8.4e-23
VEE39669.1|1091790_1092315_-	cell envelope biogenesis YhbN	NA	NA	NA	NA	NA
VEE39670.1|1092301_1092874_-	lipopolysaccharide ABC transporter permease LptC	NA	NA	NA	NA	NA
VEE39671.1|1092882_1093407_-	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase	NA	A0A140XBD6	Dickeya_phage	48.1	5.3e-27
VEE39672.1|1093419_1094394_-	KpsF/GutQ family protein	NA	A0A2P0VNK5	Tetraselmis_virus	33.1	2.1e-37
VEE39673.1|1094642_1095452_+	ABC transporter-like protein	NA	G9BWD6	Planktothrix_phage	32.5	5.9e-25
>prophage 2
LR134299	Pseudomonas putida strain NCTC13186 genome assembly, chromosome: 1	6134366	1575119	1658540	6134366	transposase,integrase,tRNA	Shigella_phage(23.53%)	79	1622829:1622843	1662491:1662505
VEE40111.1|1575119_1577813_+|tRNA	alanyl-tRNA synthetase	tRNA	A0A1V0SK38	Klosneuvirus	38.5	1.2e-74
VEE40112.1|1577915_1579151_+	aspartate kinase	NA	NA	NA	NA	NA
VEE40113.1|1579318_1579507_+	regulator of secondary metabolites	NA	A0A2I7RT00	Vibrio_phage	61.5	8.0e-10
VEE40114.1|1580698_1582141_+	magnesium transporter	NA	NA	NA	NA	NA
VEE40115.1|1582248_1582566_-	DNA-binding protein	NA	A0A1Y0SXL4	Pseudomonas_phage	64.6	6.9e-14
VEE40116.1|1582919_1583513_+	phosphonate metabolism protein/1,5-bisphosphokinase PhnN	NA	NA	NA	NA	NA
VEE40117.1|1584217_1584709_-	Cro/CI family transcriptional regulator	NA	NA	NA	NA	NA
VEE40118.1|1584890_1585283_+	Uncharacterised protein	NA	A0A2H4J161	uncultured_Caudovirales_phage	42.0	8.0e-20
VEE40119.1|1585332_1585779_+	Uncharacterised protein	NA	A0A2H4J163	uncultured_Caudovirales_phage	48.0	3.9e-39
VEE40120.1|1585838_1586222_+	Uncharacterised protein	NA	A0A2H4J8C3	uncultured_Caudovirales_phage	70.1	4.7e-49
VEE40121.1|1586489_1587173_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE40122.1|1587419_1588322_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
VEE40123.1|1588567_1589440_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
VEE40124.1|1590158_1591502_+	porin	NA	NA	NA	NA	NA
VEE40125.1|1591917_1592823_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
VEE40126.1|1592809_1593685_+	carbon-nitrogen hydrolase	NA	NA	NA	NA	NA
VEE40127.1|1593681_1594347_+	4-hydroxy-4-methyl-2-oxoglutarate aldolase	NA	NA	NA	NA	NA
VEE40128.1|1594457_1595750_+	major facilitator family transporter	NA	Q6JIH2	Burkholderia_virus	35.7	4.0e-60
VEE40129.1|1595908_1596835_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
VEE40130.1|1597032_1597794_-|transposase	transposase	transposase	NA	NA	NA	NA
VEE40131.1|1598620_1600201_+	opine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
VEE40132.1|1600201_1601329_+	nopaline dehydrogenase	NA	NA	NA	NA	NA
VEE40133.1|1601297_1601606_+	Opine oxidase subunit C	NA	NA	NA	NA	NA
VEE40134.1|1601602_1602997_+	nopaline dehydrogenase	NA	NA	NA	NA	NA
VEE40135.1|1602999_1603131_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE40136.1|1603127_1604069_+	opine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
VEE40137.1|1604065_1604938_+	opine ABC transporter permease	NA	NA	NA	NA	NA
VEE40138.1|1604985_1606836_+	opine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.2	6.5e-19
VEE40139.1|1606946_1608020_+	NAD/NADP octopine/nopaline dehydrogenase	NA	NA	NA	NA	NA
VEE40140.1|1608393_1609038_+	Major Facilitator Superfamily	NA	NA	NA	NA	NA
VEE40141.1|1609042_1609672_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE40142.1|1610095_1611181_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE40143.1|1611774_1611987_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE40144.1|1612062_1612230_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE40145.1|1612434_1612671_-	phosphoglycerate mutase family protein	NA	NA	NA	NA	NA
VEE40146.1|1612784_1613411_-	phosphoglycerate mutase	NA	NA	NA	NA	NA
VEE40147.1|1613820_1614075_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE40148.1|1614759_1616523_-	ATPase	NA	NA	NA	NA	NA
VEE40149.1|1616519_1617770_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE40150.1|1619247_1620072_+	RNA-directed DNA polymerase	NA	NA	NA	NA	NA
VEE40151.1|1619995_1620754_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	62.4	1.0e-63
VEE40152.1|1620744_1620999_-|transposase	IS3 family transposase	transposase	U5P4I9	Shigella_phage	54.4	3.0e-12
VEE40153.1|1621009_1622545_-|transposase	ISPpu14-like transposase, Orf3	transposase	A0A218MNE7	uncultured_virus	46.4	4.3e-117
VEE40154.1|1622608_1622944_-|transposase	transposase	transposase	NA	NA	NA	NA
1622829:1622843	attL	GCGCAGTGCGGCTTC	NA	NA	NA	NA
VEE40155.1|1622940_1623261_-|transposase	ISPpu14-like transposase, Orf1	transposase	NA	NA	NA	NA
VEE40156.1|1623957_1625493_-|transposase	ISPpu14-like transposase, Orf3	transposase	A0A218MNE7	uncultured_virus	46.1	6.6e-118
VEE40157.1|1625556_1625892_-|transposase	transposase	transposase	NA	NA	NA	NA
VEE40158.1|1625888_1626209_-|transposase	ISPpu14, transposase Orf1	transposase	NA	NA	NA	NA
VEE40159.1|1626618_1626972_-	endoribonuclease L-PSP	NA	NA	NA	NA	NA
VEE40160.1|1626946_1628245_-	D-amino acid dehydrogenase small subunit	NA	NA	NA	NA	NA
VEE40161.1|1628739_1630032_-	amino acid MFS transporter	NA	Q6JIH2	Burkholderia_virus	31.0	1.5e-51
VEE40162.1|1630530_1631721_-	peptidase, M24 family protein	NA	NA	NA	NA	NA
VEE40163.1|1631770_1632646_-	ectoine utilization protein EutC	NA	NA	NA	NA	NA
VEE40164.1|1632774_1633767_-	threonine dehydratase	NA	NA	NA	NA	NA
VEE40165.1|1633874_1635275_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
VEE40166.1|1635518_1636373_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
VEE40167.1|1636443_1637100_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
VEE40168.1|1637099_1637756_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
VEE40169.1|1637755_1638622_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	41.7	5.0e-30
VEE40170.1|1638672_1639140_-	AsnC family transcriptional regulator	NA	NA	NA	NA	NA
VEE40171.1|1639342_1640338_+	EutE ectoine utilization protein	NA	NA	NA	NA	NA
VEE40172.1|1640597_1642070_+	succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
VEE40173.1|1642091_1643483_+	aminotransferase	NA	NA	NA	NA	NA
VEE40174.1|1643716_1643929_+	DNA-directed DNA polymerase	NA	NA	NA	NA	NA
VEE40175.1|1644101_1644764_-|integrase	putative integrase	integrase	Q716C2	Shigella_phage	57.7	2.7e-68
VEE40176.1|1644955_1645264_-|transposase	putative transposase	transposase	Q716C1	Shigella_phage	50.5	1.0e-17
VEE40177.1|1645565_1645889_-	phosphoglycerate mutase family protein	NA	NA	NA	NA	NA
VEE40178.1|1645983_1646274_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE40179.1|1646815_1647034_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE40180.1|1647045_1647447_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE40181.1|1647536_1647761_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE40182.1|1647862_1648963_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE40183.1|1649813_1650392_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE40184.1|1650388_1650937_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE40185.1|1651835_1652435_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE40186.1|1652505_1655805_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE40187.1|1655807_1657238_-|integrase	phage integrase site specific recombinase	integrase	NA	NA	NA	NA
VEE40188.1|1657684_1658125_-|transposase	transposase ISPs1	transposase	NA	NA	NA	NA
VEE40189.1|1658183_1658540_-|transposase	transposase IS5	transposase	A0A0N9SHJ4	Paenibacillus_phage	40.0	1.5e-17
1662491:1662505	attR	GCGCAGTGCGGCTTC	NA	NA	NA	NA
>prophage 3
LR134299	Pseudomonas putida strain NCTC13186 genome assembly, chromosome: 1	6134366	2121435	2166255	6134366	protease,tRNA,integrase,transposase	uncultured_Caudovirales_phage(33.33%)	41	2129782:2129797	2165385:2165400
VEE40577.1|2121435_2122968_-|transposase	ISPpu15, transposase Orf2	transposase	S5VTD3	Leptospira_phage	34.9	7.6e-82
VEE40578.1|2122986_2123346_-	ISPsy5, Orf1	NA	S5VXZ8	Leptospira_phage	41.2	9.9e-17
VEE40579.1|2124160_2124892_-	YD repeat protein	NA	NA	NA	NA	NA
VEE40580.1|2125071_2125902_-	alpha/beta hydrolase fold family protein	NA	A0A249XTE1	Mycobacterium_phage	29.8	3.4e-12
VEE40581.1|2126075_2127365_-	FAD dependent oxidoreductase	NA	NA	NA	NA	NA
VEE40582.1|2127510_2129505_-	DNA topoisomerase III	NA	A0A1X9I6W8	Streptococcus_phage	30.3	2.0e-29
VEE40583.1|2129639_2130068_-	N-acetyltransferase GCN5	NA	NA	NA	NA	NA
2129782:2129797	attL	TTCTGCGCTTCGACGA	NA	NA	NA	NA
VEE40584.1|2130060_2131227_-	cupin	NA	NA	NA	NA	NA
VEE40585.1|2131308_2132679_-	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.1	1.0e-109
VEE40586.1|2132816_2133443_-	HflD-like high frequency lysogenization protein	NA	NA	NA	NA	NA
VEE40587.1|2133439_2134564_-|tRNA	tRNA-specific 2-thiouridylase MnmA	tRNA	NA	NA	NA	NA
VEE40588.1|2134623_2135064_-	NUDIX hydrolase	NA	NA	NA	NA	NA
VEE40589.1|2135256_2137482_-	isocitrate dehydrogenase	NA	NA	NA	NA	NA
VEE40590.1|2137896_2139153_+	isocitrate dehydrogenase (NADP(+))	NA	Q77Z09	Phage_21	79.6	3.5e-16
VEE40591.1|2139224_2139491_-	cold-shock DNA-binding domain-containing protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	56.1	1.7e-13
VEE40592.1|2139838_2140084_+|protease	ATP-dependent Clp protease adaptor protein ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.6	2.7e-10
VEE40593.1|2140114_2142385_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	43.4	1.7e-167
VEE40594.1|2142470_2142689_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
VEE40595.1|2142790_2143498_-|tRNA	arginyl-tRNA-protein transferase	tRNA	NA	NA	NA	NA
VEE40596.1|2143554_2144235_-|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	tRNA	NA	NA	NA	NA
VEE40597.1|2144726_2147147_+	FtsK	NA	A0A218M9A2	Mycobacterium_phage	50.6	9.5e-87
VEE40598.1|2147209_2147833_+	outer-membrane lipoprotein carrier protein	NA	NA	NA	NA	NA
VEE40599.1|2147845_2149171_+	recombination factor protein RarA	NA	G3MBE0	Bacillus_virus	39.8	4.0e-79
VEE40600.1|2149167_2149542_+	camphor resistance protein CrcB	NA	A0A2H4J148	uncultured_Caudovirales_phage	45.8	7.1e-10
VEE40601.1|2149572_2150853_+|tRNA	seryl-tRNA synthetase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	54.4	1.6e-96
VEE40602.1|2150853_2152245_+	uroporphyrin-III C-methyltransferase	NA	NA	NA	NA	NA
VEE40603.1|2152351_2153311_-	glutathione S-transferase domain-containing protein	NA	NA	NA	NA	NA
VEE40604.1|2153405_2154407_-	anthranilate phosphoribosyltransferase like protein	NA	A0A2H4JBY5	uncultured_Caudovirales_phage	80.8	3.6e-157
VEE40605.1|2154403_2154739_-	DsrC family protein	NA	A0A2H4J8B6	uncultured_Caudovirales_phage	75.7	7.5e-43
VEE40606.1|2154735_2155032_-	DsrH family protein	NA	A0A2H4JG28	uncultured_Caudovirales_phage	58.6	2.0e-23
VEE40607.1|2155031_2155391_-	Sulfur relay protein TusC	NA	A0A2H4J8C0	uncultured_Caudovirales_phage	66.7	8.6e-37
VEE40608.1|2155392_2155869_-	sulfur transfer complex subunit TusD	NA	A0A2H4JA39	uncultured_Caudovirales_phage	79.1	9.3e-55
VEE40609.1|2155882_2157262_-	uracil-xanthine permease	NA	H9YQ34	environmental_Halophage	51.1	1.6e-27
VEE40610.1|2157425_2158097_-	membrane protein	NA	A0A2H4JFM9	uncultured_Caudovirales_phage	91.0	2.1e-105
VEE40611.1|2158572_2159619_+	DNA-cytosine methyltransferase	NA	Q83VT0	Escherichia_phage	29.5	5.1e-21
VEE40612.1|2159630_2161679_+	DNA mismatch repair protein	NA	NA	NA	NA	NA
VEE40613.1|2161675_2162932_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE40614.1|2162983_2163943_-|integrase	phage integrase site specific recombinase	integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	74.9	2.5e-131
VEE40615.1|2164015_2164375_+	ISPsy5, Orf1	NA	S5VXZ8	Leptospira_phage	37.3	4.9e-16
VEE40616.1|2164402_2165926_+|transposase	ISPpu13, transposase Orf2	transposase	S5VTD3	Leptospira_phage	37.1	3.2e-88
2165385:2165400	attR	TCGTCGAAGCGCAGAA	NA	NA	NA	NA
VEE40617.1|2165940_2166255_+|transposase	ISPpu13, transposase Orf3	transposase	NA	NA	NA	NA
>prophage 4
LR134299	Pseudomonas putida strain NCTC13186 genome assembly, chromosome: 1	6134366	2170986	2231888	6134366	protease,holin,transposase	uncultured_virus(16.67%)	57	NA	NA
VEE40620.1|2170986_2172522_-|transposase	ISPpu14-like transposase, Orf3	transposase	A0A218MNE7	uncultured_virus	46.1	6.6e-118
VEE40621.1|2172585_2172921_-|transposase	transposase	transposase	NA	NA	NA	NA
VEE40622.1|2172917_2173238_-|transposase	ISPpu14, transposase Orf1	transposase	NA	NA	NA	NA
VEE40623.1|2173507_2174692_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE40624.1|2174962_2175112_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
VEE40625.1|2175277_2175964_-	isochorismatase hydrolase	NA	NA	NA	NA	NA
VEE40626.1|2176171_2176633_+	endoribonuclease L-PSP	NA	NA	NA	NA	NA
VEE40627.1|2176652_2177639_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
VEE40628.1|2177784_2178165_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE40629.1|2178176_2179502_-	short-chain dehydrogenase	NA	W8CYX9	Bacillus_phage	36.1	2.2e-05
VEE40630.1|2179534_2179768_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE40631.1|2179781_2180984_-	alcohol dehydrogenase	NA	E3SJ82	Synechococcus_phage	28.6	6.7e-09
VEE40632.1|2181132_2181495_-	response regulator	NA	NA	NA	NA	NA
VEE40633.1|2181642_2182761_+	Sensor histidine kinase	NA	A0A1B0VMK3	Pseudomonas_phage	50.7	4.1e-101
VEE40634.1|2182766_2183168_-	MutT/nudix family protein	NA	A0A0G2SS60	Proteus_phage	39.7	5.7e-05
VEE40635.1|2183382_2183703_+|transposase	ISPpu14, transposase Orf1	transposase	NA	NA	NA	NA
VEE40636.1|2183699_2184035_+|transposase	transposase	transposase	NA	NA	NA	NA
VEE40637.1|2184098_2185634_+|transposase	ISPpu14-like transposase, Orf3	transposase	A0A218MNE7	uncultured_virus	48.0	1.7e-118
VEE40638.1|2185847_2186174_-	stress-induced protein	NA	NA	NA	NA	NA
VEE40639.1|2186840_2187635_-	lipoprotein	NA	NA	NA	NA	NA
VEE40640.1|2188444_2189653_+	major facilitator transporter	NA	NA	NA	NA	NA
VEE40641.1|2189809_2190415_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
VEE40642.1|2190516_2191788_-	chloride channel core protein	NA	NA	NA	NA	NA
VEE40643.1|2192014_2193376_-	Na+/H+ antiporter NhaA	NA	A0A2H4J5W3	uncultured_Caudovirales_phage	40.2	8.3e-64
VEE40644.1|2193679_2195653_+|holin	Choline/carnitine/betaine transporter family protein	holin	A0A2I7QNT1	Vibrio_phage	29.1	3.4e-26
VEE40645.1|2195680_2196097_-	Uncharacterized conserved protein	NA	NA	NA	NA	NA
VEE40646.1|2196093_2198121_-	Transporter	NA	NA	NA	NA	NA
VEE40647.1|2198148_2199099_-	Periplasmic binding protein, putative	NA	NA	NA	NA	NA
VEE40648.1|2199203_2200658_-	cation transporter	NA	NA	NA	NA	NA
VEE40649.1|2200925_2201567_-	3-oxoadipate CoA-transferase, subunit B	NA	NA	NA	NA	NA
VEE40650.1|2201575_2202271_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
VEE40651.1|2202649_2204827_+	methyl-accepting chemotaxis transducer	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.5	2.1e-16
VEE40652.1|2205031_2205670_+	putative TetR family transcriptional regulator	NA	NA	NA	NA	NA
VEE40653.1|2205673_2209237_-	aldehyde oxidase and xanthine dehydrogenase molybdopterin-binding protein	NA	NA	NA	NA	NA
VEE40654.1|2209233_2209707_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
VEE40655.1|2210148_2210625_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
VEE40656.1|2210695_2211748_-	peptidase M29 family	NA	NA	NA	NA	NA
VEE40657.1|2212069_2213218_+	monooxygenase, FAD-binding protein	NA	NA	NA	NA	NA
VEE40658.1|2213214_2214021_+	Alpha/beta fold family hydrolase	NA	NA	NA	NA	NA
VEE40659.1|2214034_2214787_+	maleate cis-trans isomerase	NA	NA	NA	NA	NA
VEE40660.1|2214802_2215444_+	isochorismatase family protein	NA	NA	NA	NA	NA
VEE40661.1|2215652_2216966_+	major facilitator superfamily transporter	NA	NA	NA	NA	NA
VEE40662.1|2217103_2218396_+	outer membrane porin	NA	NA	NA	NA	NA
VEE40663.1|2218567_2218753_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE40664.1|2219601_2220507_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
VEE40665.1|2220605_2221367_+	membrane protein	NA	NA	NA	NA	NA
VEE40666.1|2221368_2222778_-	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	34.4	2.9e-19
VEE40667.1|2222930_2224760_-	sodium/sulfate symporter family protein	NA	NA	NA	NA	NA
VEE40668.1|2224886_2225279_-	17 kDa surface antigen	NA	NA	NA	NA	NA
VEE40669.1|2225781_2226072_-	putative lipoprotein	NA	NA	NA	NA	NA
VEE40670.1|2226189_2226540_+	putative lipoprotein	NA	NA	NA	NA	NA
VEE40671.1|2226709_2227531_+	methyltransferase type 12	NA	NA	NA	NA	NA
VEE40672.1|2227531_2228299_-	short chain dehydrogenase/reductase family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.3	5.0e-18
VEE40673.1|2228335_2229403_-	Aminoglycoside phosphotransferase	NA	NA	NA	NA	NA
VEE40674.1|2229586_2229904_-	sterol-binding	NA	NA	NA	NA	NA
VEE40675.1|2229960_2230671_-	phosphoglycerate mutase	NA	NA	NA	NA	NA
VEE40676.1|2230868_2231888_+|protease	Putative periplasmic protease	protease	A0A2H4UUF9	Bodo_saltans_virus	26.0	6.9e-23
>prophage 5
LR134299	Pseudomonas putida strain NCTC13186 genome assembly, chromosome: 1	6134366	2630780	2666424	6134366	transposase	uncultured_virus(25.0%)	33	NA	NA
VEE41032.1|2630780_2631746_-|transposase	ISPpu10, transposase	transposase	NA	NA	NA	NA
VEE41033.1|2632125_2633661_-|transposase	ISPpu14-like transposase, Orf3	transposase	A0A218MNE7	uncultured_virus	46.1	6.6e-118
VEE41034.1|2633724_2634060_-|transposase	transposase	transposase	NA	NA	NA	NA
VEE41035.1|2634056_2634377_-|transposase	ISPpu14, transposase Orf1	transposase	NA	NA	NA	NA
VEE41036.1|2634691_2635870_-|transposase	ISPpu11, transposase	transposase	NA	NA	NA	NA
VEE41037.1|2635934_2637935_-	peptidase U32	NA	Q6DW11	Phage_TP	29.1	2.8e-20
VEE41038.1|2638148_2638529_-	endoribonuclease L-PSP	NA	NA	NA	NA	NA
VEE41039.1|2638665_2639358_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
VEE41040.1|2639359_2639620_-	topoisomerase II	NA	NA	NA	NA	NA
VEE41041.1|2639739_2640672_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
VEE41042.1|2640788_2641940_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
VEE41043.1|2641956_2643030_-	enoyl-CoA hydratase/isomerase	NA	NA	NA	NA	NA
VEE41044.1|2643358_2649202_+	multicopper oxidase	NA	NA	NA	NA	NA
VEE41045.1|2649220_2651197_+	YVTN beta-propeller repeat-containing protein	NA	NA	NA	NA	NA
VEE41046.1|2651193_2651850_+	electron transport protein SCO1/SenC	NA	NA	NA	NA	NA
VEE41047.1|2651846_2652512_+	Electron transport protein SCO1/SenC	NA	NA	NA	NA	NA
VEE41048.1|2652706_2654197_+	branched chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
VEE41049.1|2654209_2654851_+	SurA domain-containing protein	NA	NA	NA	NA	NA
VEE41050.1|2655103_2655634_+	Response regulator receiver protein	NA	NA	NA	NA	NA
VEE41051.1|2655817_2657491_+	type II secretion system protein E	NA	NA	NA	NA	NA
VEE41052.1|2657474_2658254_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE41053.1|2658255_2658798_+	pilus protein	NA	NA	NA	NA	NA
VEE41054.1|2658784_2659348_+	pilus assembly protein PilO	NA	NA	NA	NA	NA
VEE41055.1|2659347_2659854_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE41056.1|2659850_2661716_+	type II and III secretion system protein	NA	NA	NA	NA	NA
VEE41057.1|2661712_2662192_+	Type II secretory pathway pseudopilin PulG-like protein	NA	NA	NA	NA	NA
VEE41058.1|2662197_2662572_+	type II secretion system protein G	NA	NA	NA	NA	NA
VEE41059.1|2662546_2663074_+	type II secretory pathway, pseudopilin PulG	NA	NA	NA	NA	NA
VEE41060.1|2663070_2663472_+	curli assembly protein CsgE	NA	NA	NA	NA	NA
VEE41061.1|2663468_2663882_+	curli fiber protein CsgF	NA	NA	NA	NA	NA
VEE41062.1|2663916_2664765_+	Curli production assembly/transport component CsgG	NA	M1ICK2	Pelagibacter_phage	43.9	2.7e-41
VEE41063.1|2664946_2665744_-	YD repeat protein	NA	NA	NA	NA	NA
VEE41064.1|2666043_2666424_-|transposase	IS4, transposase	transposase	Q38213	Escherichia_phage	55.3	1.1e-34
>prophage 6
LR134299	Pseudomonas putida strain NCTC13186 genome assembly, chromosome: 1	6134366	3158584	3184537	6134366	protease,holin,plate,terminase,portal,tail	uncultured_Caudovirales_phage(73.08%)	30	NA	NA
VEE41502.1|3158584_3159145_-	phage protein	NA	A0A2H4JBH9	uncultured_Caudovirales_phage	50.6	4.2e-30
VEE41503.1|3159141_3159693_-	pyocin R2 PP, lytic enzyme	NA	A0A2H4JHX4	uncultured_Caudovirales_phage	68.1	7.4e-64
VEE41504.1|3159729_3160773_-|tail	pyocin R2 PP, tail formation	tail	A0A2H4JBF6	uncultured_Caudovirales_phage	72.0	2.1e-144
VEE41505.1|3160832_3161039_-|tail	pyocin R2 PP, tail component protein	tail	A0A2H4J9Z9	uncultured_Caudovirales_phage	62.7	2.5e-17
VEE41506.1|3161013_3161859_-|tail	pyocin R2 PP, tail formation protein	tail	A0A2H4J875	uncultured_Caudovirales_phage	55.4	1.9e-79
VEE41507.1|3161868_3165138_-|tail	pyocin R2_PP, tail length determination protein	tail	A0A2H4JG00	uncultured_Caudovirales_phage	34.5	1.3e-70
VEE41508.1|3165270_3165567_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE41509.1|3165612_3166122_-|tail	pyocin R2 PP, tail tube protein	tail	Q7M2A5	Pseudomonas_phage	68.5	3.4e-63
VEE41510.1|3166134_3167301_-|tail	pyocin R2 PP, tail sheath protein	tail	A0A2H4J869	uncultured_Caudovirales_phage	84.2	2.5e-186
VEE41511.1|3167395_3167857_-|tail	putative tail fiber assembly-like protein	tail	A0A077K9S5	Ralstonia_phage	47.4	2.6e-17
VEE41512.1|3167879_3168620_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE41513.1|3168626_3169505_-|tail	tail fiber protein	tail	A2I2X8	Vibrio_virus	37.6	6.8e-19
VEE41514.1|3169501_3170314_-|tail	pyocin R2 PP, tail formation protein	tail	V5YTN0	Pseudomonas_phage	37.3	5.3e-18
VEE41515.1|3170310_3171291_-|plate,tail	pyocin R2 PP, baseplate/tail fiber protein	plate,tail	Q37840	Escherichia_phage	38.9	2.4e-49
VEE41516.1|3171287_3171614_-|plate	pyocin R2 PP, baseplate protein	plate	A0A2H4JA09	uncultured_Caudovirales_phage	65.7	8.1e-34
VEE41517.1|3171616_3171886_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE41518.1|3171928_3172531_-	pyocin R2 PP	NA	A0A2H4JG06	uncultured_Caudovirales_phage	66.4	3.5e-51
VEE41519.1|3172527_3173058_-	phage protein	NA	A0A2H4J881	uncultured_Caudovirales_phage	48.7	1.9e-32
VEE41520.1|3173050_3173713_-	phage-like protein	NA	A0A2H4JBV1	uncultured_Caudovirales_phage	63.0	2.3e-72
VEE41521.1|3173709_3174024_-	Uncharacterised protein	NA	A0A2H4J879	uncultured_Caudovirales_phage	59.6	2.9e-28
VEE41522.1|3174026_3175022_-	elements of external origin	NA	A0A2H4J890	uncultured_Caudovirales_phage	70.3	1.6e-133
VEE41523.1|3175083_3175431_-	Uncharacterised protein	NA	A0A2H4JF15	uncultured_Caudovirales_phage	62.4	1.7e-29
VEE41524.1|3175433_3176597_-|protease	ClpP protease	protease	A0A2H4JDI2	uncultured_Caudovirales_phage	69.1	3.4e-135
VEE41525.1|3176593_3178087_-|portal	portal protein	portal	A0A2H4JFL5	uncultured_Caudovirales_phage	75.5	4.8e-214
VEE41526.1|3178083_3178290_-	Uncharacterised protein	NA	A0A2H4JA19	uncultured_Caudovirales_phage	70.6	1.6e-19
VEE41527.1|3178291_3180328_-|terminase	terminase large subunit	terminase	A0A2H4J898	uncultured_Caudovirales_phage	78.2	2.1e-297
VEE41528.1|3180332_3180944_-|terminase	terminase small subunit	terminase	A0A2H4JG15	uncultured_Caudovirales_phage	50.5	5.2e-42
VEE41529.1|3181108_3181456_-|holin	pyocin R2 PP, holin	holin	B5TK61	Pseudomonas_phage	71.3	3.3e-41
VEE41530.1|3181967_3182330_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE41531.1|3182326_3184537_-	TraC domain-containing protein	NA	A0A2D1GN57	Marinobacter_phage	45.9	1.4e-182
>prophage 7
LR134299	Pseudomonas putida strain NCTC13186 genome assembly, chromosome: 1	6134366	3496199	3503566	6134366		uncultured_Caudovirales_phage(66.67%)	10	NA	NA
VEE41846.1|3496199_3497057_+	short chain dehydrogenase/reductase family oxido	NA	A0A2N9QUX2	Trichoplusia_ni_ascovirus	50.5	3.7e-70
VEE41847.1|3497225_3497690_+	hemerythrin HHE cation binding domain-containing protein	NA	NA	NA	NA	NA
VEE41848.1|3497764_3498100_+	amino acid transporter	NA	NA	NA	NA	NA
VEE41849.1|3498277_3498451_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE41850.1|3498663_3499011_+	regulatory protein ArsR	NA	A0A2H4J145	uncultured_Caudovirales_phage	61.1	8.6e-34
VEE41851.1|3499032_3500316_+	arsenical pump membrane protein	NA	A0A2H4J144	uncultured_Caudovirales_phage	75.1	4.9e-175
VEE41852.1|3500344_3500815_+	protein tyrosine phosphatase	NA	A0A2H4J8A6	uncultured_Caudovirales_phage	69.2	5.7e-57
VEE41853.1|3500828_3501530_+	arsenate resistance ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	79.4	1.1e-104
VEE41854.1|3501542_3502907_-	integral membrane sensor signal transduction histidine kinase	NA	NA	NA	NA	NA
VEE41855.1|3502903_3503566_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	37.1	4.2e-29
>prophage 8
LR134299	Pseudomonas putida strain NCTC13186 genome assembly, chromosome: 1	6134366	3909285	3967623	6134366	terminase,coat	Feldmannia_irregularis_virus(14.29%)	55	NA	NA
VEE42210.1|3909285_3910257_-|coat	spore coat U domain protein	coat	NA	NA	NA	NA
VEE42211.1|3910253_3912647_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA	NA
VEE42212.1|3912659_3913436_-	type 1 pili usher pathway chaperone CsuC	NA	NA	NA	NA	NA
VEE42213.1|3913476_3913980_-|coat	Spore coat U domain-containing protein	coat	NA	NA	NA	NA
VEE42214.1|3913983_3914517_-|coat	Spore coat U domain-containing protein	coat	NA	NA	NA	NA
VEE42215.1|3914535_3915072_-|coat	spore coat U domain-containing protein	coat	NA	NA	NA	NA
VEE42216.1|3915102_3915618_-|coat	spore coat U domain-containing protein	coat	NA	NA	NA	NA
VEE42217.1|3915898_3918145_+	multi-sensor signal transduction histidine kinase	NA	Q6XLU9	Feldmannia_irregularis_virus	25.1	1.6e-16
VEE42218.1|3918160_3918622_+	response regulator receiver protein	NA	NA	NA	NA	NA
VEE42219.1|3918635_3921023_+	multi-sensor hybrid histidine kinase	NA	Q8QNA2	Ectocarpus_siliculosus_virus	26.5	4.9e-11
VEE42220.1|3921474_3921717_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VEE42221.1|3921849_3922920_+	AFG1 family ATPase	NA	NA	NA	NA	NA
VEE42222.1|3923032_3924922_-	AMP-dependent synthetase and ligase	NA	A0A2H4PQU7	Staphylococcus_phage	29.7	9.7e-55
VEE42223.1|3925102_3925969_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
VEE42224.1|3925942_3927097_-	CBS domain-containing protein	NA	NA	NA	NA	NA
VEE42225.1|3927377_3928697_-	integral membrane sensor signal transduction histidine kinase	NA	NA	NA	NA	NA
VEE42226.1|3928693_3929362_-	DNA-binding response regulator	NA	NA	NA	NA	NA
VEE42227.1|3929362_3929677_-	peptidase	NA	NA	NA	NA	NA
VEE42228.1|3929676_3929985_-	peptidase	NA	NA	NA	NA	NA
VEE42229.1|3930222_3931302_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE42230.1|3931413_3931611_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE42231.1|3931607_3932339_-	zeta toxin	NA	NA	NA	NA	NA
VEE42232.1|3932546_3932720_+	DNA-binding protein	NA	NA	NA	NA	NA
VEE42233.1|3932784_3933141_+	6-pyruvoyl tetrahydrobiopterin synthase	NA	NA	NA	NA	NA
VEE42234.1|3933151_3933670_-	Fe-S protein	NA	NA	NA	NA	NA
VEE42235.1|3934024_3936649_+	aconitase B	NA	NA	NA	NA	NA
VEE42236.1|3936723_3938208_-	2-methylcitrate dehydratase	NA	NA	NA	NA	NA
VEE42237.1|3938374_3939577_-	Putative AcnD-accessory protein PrpF	NA	NA	NA	NA	NA
VEE42238.1|3939630_3942222_-	aconitate hydratase	NA	NA	NA	NA	NA
VEE42239.1|3942381_3943509_-	methylcitrate synthase	NA	NA	NA	NA	NA
VEE42240.1|3943569_3944460_-	2-methylisocitrate lyase	NA	NA	NA	NA	NA
VEE42241.1|3944456_3945173_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
VEE42242.1|3945461_3946016_+	putative major facilitator superfamily transporter	NA	NA	NA	NA	NA
VEE42243.1|3946021_3947557_+	membrane protein	NA	NA	NA	NA	NA
VEE42244.1|3947556_3948537_+	alpha-L-glutamate ligase-like protein	NA	NA	NA	NA	NA
VEE42245.1|3948745_3950086_+	para-aminobenzoate synthase subunit I	NA	S4VT78	Pandoravirus	32.6	4.1e-47
VEE42246.1|3950166_3950901_+	phosphoadenosine phosphosulfate reductase	NA	NA	NA	NA	NA
VEE42247.1|3951070_3952045_-	transcriptional regulator CysB	NA	NA	NA	NA	NA
VEE42248.1|3952173_3952671_-	universal stress protein	NA	NA	NA	NA	NA
VEE42249.1|3952795_3953743_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
VEE42250.1|3953975_3955052_+	phospho-2-dehydro-3-deoxyheptonate aldolase	NA	A0A2I6UFP9	Klebsiella_phage	50.8	2.2e-83
VEE42251.1|3955121_3955403_-	acetyltransferase-like protein	NA	NA	NA	NA	NA
VEE42252.1|3955910_3956162_+	outer membrane lipoprotein OprI	NA	NA	NA	NA	NA
VEE42253.1|3956295_3957273_-	ErfK/YbiS/YcfS/YnhG family protein	NA	NA	NA	NA	NA
VEE42254.1|3957386_3957677_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE42255.1|3957735_3958341_-	arylesterase	NA	NA	NA	NA	NA
VEE42256.1|3958351_3959038_+	ABC transporter-like protein	NA	G9BWD6	Planktothrix_phage	38.4	3.1e-35
VEE42257.1|3959034_3961542_+	ABC transporter permease	NA	NA	NA	NA	NA
VEE42258.1|3961605_3962094_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
VEE42259.1|3962105_3962414_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE42260.1|3962662_3963100_-	DoxX family protein	NA	NA	NA	NA	NA
VEE42261.1|3963212_3964619_-	Lytic transglycosylase, catalytic	NA	NA	NA	NA	NA
VEE42262.1|3964776_3965574_+	TatD-related deoxyribonuclease	NA	NA	NA	NA	NA
VEE42263.1|3965700_3967179_+	methyl-accepting chemotaxis sensory transducer	NA	A0A2H4J162	uncultured_Caudovirales_phage	32.0	5.0e-30
VEE42264.1|3967254_3967623_+|terminase	terminase	terminase	NA	NA	NA	NA
>prophage 9
LR134299	Pseudomonas putida strain NCTC13186 genome assembly, chromosome: 1	6134366	3975984	4021717	6134366	protease,capsid,head,integrase,tail	Ralstonia_phage(64.29%)	49	3980156:3980215	4020396:4020483
VEE42272.1|3975984_3977268_-|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	58.3	3.7e-138
VEE42273.1|3977376_3978018_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	60.6	6.4e-59
VEE42274.1|3978109_3979423_-	trigger factor	NA	NA	NA	NA	NA
VEE42275.1|3979671_3979971_-	DNA repair ATPase	NA	NA	NA	NA	NA
3980156:3980215	attL	AATATGGGGTGGACGATGGGAATCGAACCCACGACAACTGGAATCACAATCCAGCGCTCT	NA	NA	NA	NA
VEE42276.1|3980534_3981617_-|integrase	integrative genetic element Ppu40, integrase	integrase	A0A2D2W4Z2	Ralstonia_phage	51.4	3.9e-93
VEE42277.1|3981591_3981948_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE42278.1|3982362_3982947_-	antirestriction protein	NA	A0A222YZE5	Mycobacterium_phage	30.1	5.9e-11
VEE42279.1|3983192_3983525_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE42280.1|3983545_3983677_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE42281.1|3984147_3984390_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE42282.1|3984730_3985171_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE42283.1|3985207_3986896_-	DNA maturase B	NA	A0A2D2W5F3	Ralstonia_phage	74.4	1.3e-252
VEE42284.1|3987059_3987815_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE42285.1|3987822_3988110_-	Uncharacterised protein	NA	A0A2R2ZGB7	Ralstonia_phage	68.9	1.1e-29
VEE42286.1|3988096_3988333_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE42287.1|3988379_3988883_-|tail	tail fiber assembly domain protein	tail	A0A219YB15	Aeromonas_phage	49.2	1.7e-06
VEE42288.1|3988882_3990523_-|tail	phage tail fiber protein	tail	L7TLW7	Rhizobium_phage	37.7	4.2e-22
VEE42289.1|3990585_3995295_-	phage internal core protein	NA	A0A2R2ZGA5	Ralstonia_phage	60.8	0.0e+00
VEE42290.1|3995307_3997497_-	Uncharacterised protein	NA	A0A2D2W5A9	Ralstonia_phage	50.7	4.6e-181
VEE42291.1|3997506_3998067_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE42292.1|3998051_3998465_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE42293.1|3998520_4000866_-|tail	tail tubular protein B	tail	A0A2D2W513	Ralstonia_phage	54.7	6.3e-245
VEE42294.1|4000869_4001457_-|tail	tail tubular protein A	tail	A0A2R2ZGD2	Ralstonia_phage	50.8	4.7e-48
VEE42295.1|4001518_4002487_-|capsid	minor capsid protein 10	capsid	L7TJ83	Rhizobium_phage	57.0	1.1e-91
VEE42296.1|4002648_4002858_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE42297.1|4002872_4003313_-	Protein of uncharacterised function (DUF1353)	NA	A0A2K9VHJ4	Pseudomonas_phage	50.8	2.4e-25
VEE42298.1|4003340_4004120_-|capsid	capsid assembly protein	capsid	A0A2D2W594	Ralstonia_phage	44.5	4.7e-48
VEE42299.1|4004119_4004281_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE42300.1|4004258_4005833_-|head,tail	head-to-tail joining protein	head,tail	A0A2R2ZGG8	Ralstonia_phage	60.3	9.6e-165
VEE42301.1|4006060_4006255_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE42302.1|4006309_4007695_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE42303.1|4007705_4007960_-	Protein of unknwon function (DUF3310)	NA	Q774Z7	Bordetella_phage	55.2	4.8e-10
VEE42304.1|4007978_4008731_-	phage exonuclease	NA	A0A2R2ZGE9	Ralstonia_phage	59.6	1.7e-82
VEE42305.1|4008679_4008889_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE42306.1|4008923_4009139_-	Uncharacterised protein	NA	A0A2R2ZGG1	Ralstonia_phage	67.2	1.6e-17
VEE42307.1|4009152_4011204_-	DNA polymerase	NA	A0A2R2ZGG6	Ralstonia_phage	58.9	1.0e-219
VEE42308.1|4011215_4011410_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE42309.1|4011399_4012002_-	Uncharacterised protein	NA	A0A2D2W501	Ralstonia_phage	55.6	1.1e-44
VEE42310.1|4012020_4012188_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE42311.1|4012245_4012440_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE42312.1|4012443_4012854_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE42313.1|4012857_4013085_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE42314.1|4013099_4014551_-	DNA primase/helicase	NA	L7TLT7	Rhizobium_phage	62.7	2.4e-178
VEE42315.1|4014822_4015272_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2R2ZGC0	Ralstonia_phage	73.6	6.7e-63
VEE42316.1|4015274_4015757_-	phage endodeoxyribonuclease I	NA	A0A2R2ZGE6	Ralstonia_phage	69.4	2.0e-52
VEE42317.1|4015722_4016436_-	phage single-stranded DNA-binding protein	NA	A0A2R2ZGF7	Ralstonia_phage	62.7	3.5e-66
VEE42318.1|4016463_4016640_-	Uncharacterised protein	NA	A0A2D2W4Y9	Ralstonia_phage	58.3	1.8e-08
VEE42319.1|4017162_4019721_-	DNA-directed RNA polymerase, bacteriophage and mitochondrial type	NA	A0A2R2ZGE5	Ralstonia_phage	65.0	0.0e+00
VEE42320.1|4020862_4021717_+	bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	34.6	2.4e-29
4020396:4020483	attR	AATATGGGGTGGACGATGGGAATCGAACCCACGACAACTGGAATCACAATCCAGCGCTCTACCAACTGAGCTACGCCCACCATATTGC	NA	NA	NA	NA
>prophage 10
LR134299	Pseudomonas putida strain NCTC13186 genome assembly, chromosome: 1	6134366	4429428	4434489	6134366		uncultured_Caudovirales_phage(100.0%)	7	NA	NA
VEE42667.1|4429428_4429785_+	arsenic resistance transcriptional regulator	NA	A0A2H4J145	uncultured_Caudovirales_phage	64.9	1.6e-38
VEE42668.1|4429814_4431098_+	arsenite efflux transporter	NA	A0A2H4J144	uncultured_Caudovirales_phage	85.0	1.1e-198
VEE42669.1|4431112_4431583_+	arsenate reductase	NA	A0A2H4J8A6	uncultured_Caudovirales_phage	81.4	1.0e-66
VEE42670.1|4431606_4432320_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	89.9	1.0e-118
VEE42671.1|4432330_4432828_+	phosphatase	NA	NA	NA	NA	NA
VEE42672.1|4432853_4433936_+	monooxygenase	NA	A0A2H4J2Q2	uncultured_Caudovirales_phage	64.7	1.1e-103
VEE42673.1|4433928_4434489_+	phosphinothricin N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	68.4	1.5e-56
>prophage 11
LR134299	Pseudomonas putida strain NCTC13186 genome assembly, chromosome: 1	6134366	4781096	4871032	6134366	protease,capsid,tRNA,holin,head,integrase,terminase,portal,tail	Pseudomonas_phage(32.76%)	102	4826212:4826240	4875154:4875182
VEE42975.1|4781096_4783670_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	23.3	9.9e-26
VEE42976.1|4783810_4784134_+	ferredoxin I	NA	NA	NA	NA	NA
VEE42977.1|4784690_4786112_-	group II intron-encoding maturase	NA	H7BVN7	unidentified_phage	27.6	7.2e-18
VEE42978.1|4786586_4787594_-	RNA polymerase sigma factor	NA	G8CLC7	Synechococcus_phage	35.8	5.0e-34
VEE42979.1|4787702_4788560_-	Peptidase M23B	NA	I3PV79	Clostridium_phage	36.2	1.9e-13
VEE42980.1|4788797_4789472_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	52.0	6.8e-43
VEE42981.1|4789471_4790221_-	stationary phase survival protein SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	52.6	7.5e-67
VEE42982.1|4790208_4791267_-|tRNA	tRNA pseudouridine synthase D	tRNA	NA	NA	NA	NA
VEE42983.1|4791263_4791737_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
VEE42984.1|4791849_4792704_-	S-formylglutathione hydrolase	NA	NA	NA	NA	NA
VEE42985.1|4792712_4793825_-	D-isomer specific 2-hydroxyacid dehydrogenase	NA	E3SJ82	Synechococcus_phage	28.5	8.0e-33
VEE42986.1|4793932_4794829_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
VEE42987.1|4794956_4795664_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
VEE42988.1|4795660_4795942_-	septum formation initiator	NA	NA	NA	NA	NA
VEE42989.1|4796110_4797400_-	phosphopyruvate hydratase	NA	A0A1X9I5Z8	Streptococcus_phage	59.6	1.9e-139
VEE42990.1|4797554_4798400_-	2-dehydro-3-deoxyphosphooctonate aldolase	NA	E3T537	Cafeteria_roenbergensis_virus	42.0	1.1e-50
VEE42991.1|4798403_4800032_-	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	53.3	4.0e-158
VEE42992.1|4800299_4801583_-|tRNA	tRNA-lysidine synthetase	tRNA	NA	NA	NA	NA
VEE42993.1|4801754_4802702_-	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA	NA
VEE42994.1|4802808_4806333_-	DNA polymerase III subunit alpha	NA	A0A1C9LWZ5	Streptomyces_phage	35.8	3.8e-193
VEE42995.1|4806519_4807143_-	ribonuclease HII	NA	E3T5H8	Cafeteria_roenbergensis_virus	41.5	8.0e-22
VEE42996.1|4807144_4808272_-	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
VEE42997.1|4808273_4809050_-	UDP-N-acetylglucosamine acyltransferase	NA	NA	NA	NA	NA
VEE42998.1|4809046_4809487_-	(3R)-hydroxymyristoyl-ACP dehydratase	NA	NA	NA	NA	NA
VEE42999.1|4809601_4810645_-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA	NA	NA	NA	NA
VEE43000.1|4810658_4811162_-	outer membrane protein OmpH-like	NA	NA	NA	NA	NA
VEE43001.1|4811206_4813567_-	surface antigen family outer membrane protein	NA	NA	NA	NA	NA
VEE43002.1|4813640_4814993_-|protease	Putative zinc metalloprotease	protease	NA	NA	NA	NA
VEE43003.1|4815064_4816267_-	1-deoxy-D-xylulose 5-phosphate reductoisomerase	NA	NA	NA	NA	NA
VEE43004.1|4816251_4817067_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
VEE43005.1|4817066_4817822_-	undecaprenyl diphosphate synthase	NA	R9W0U9	Flavobacterium_phage	38.8	3.4e-19
VEE43006.1|4817837_4818395_-	ribosome recycling factor	NA	NA	NA	NA	NA
VEE43007.1|4818391_4819135_-	uridylate kinase	NA	NA	NA	NA	NA
VEE43008.1|4819316_4820180_-	elongation factor Ts	NA	NA	NA	NA	NA
VEE43009.1|4820365_4821103_-	30S ribosomal protein S2	NA	NA	NA	NA	NA
VEE43010.1|4821449_4822232_+	methionine aminopeptidase	NA	NA	NA	NA	NA
VEE43011.1|4822273_4824976_+	PII uridylyl-transferase	NA	NA	NA	NA	NA
VEE43012.1|4825006_4826203_+	succinyldiaminopimelate transaminase	NA	NA	NA	NA	NA
4826212:4826240	attL	TTCGCGGGCACGCCCGCTCCCACAGGTAC	NA	NA	NA	NA
VEE43013.1|4826308_4827955_-	Na+/H+ antiporter	NA	NA	NA	NA	NA
VEE43014.1|4828307_4828484_+	plasmid maintenance system killer protein	NA	A0A222YWE2	Escherichia_phage	56.8	1.3e-06
VEE43015.1|4828492_4828792_+	XRE family plasmid maintenance system antidote protein	NA	NA	NA	NA	NA
VEE43016.1|4829083_4829386_-	Uncharacterised protein	NA	A0A2H4JGS3	uncultured_Caudovirales_phage	47.9	6.8e-11
VEE43017.1|4829451_4829952_-	Protein of uncharacterised function (DUF2514)	NA	A0A2H4J3Q6	uncultured_Caudovirales_phage	57.3	2.2e-30
VEE43018.1|4829948_4830392_-	structural protein P5	NA	A0A2R3UAM8	Myoviridae_environmental_samples	52.4	6.4e-34
VEE43019.1|4830452_4831529_-	Streptogramin lyase	NA	NA	NA	NA	NA
VEE43020.1|4831540_4833532_-	BNR repeat-containing protein	NA	A0A2R3UAY9	Myoviridae_environmental_samples	52.0	3.8e-166
VEE43021.1|4833632_4834088_-	membrane protein	NA	B5WZT5	Pseudomonas_phage	59.1	4.4e-46
VEE43022.1|4834097_4837097_-	Uncharacterised protein	NA	A0A286S259	Klebsiella_phage	41.8	4.7e-221
VEE43023.1|4837093_4837474_-	Uncharacterised protein	NA	A0A286S2A6	Klebsiella_phage	45.6	6.1e-25
VEE43024.1|4837470_4837950_-	ArsR family transcriptional regulator	NA	A0A286S2B1	Klebsiella_phage	54.7	4.4e-44
VEE43025.1|4837946_4840388_-|tail	lambda family phage tail tape measure protein	tail	D4FUM0	Pseudomonas_phage	42.7	9.4e-135
VEE43026.1|4840819_4840981_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE43027.1|4841043_4841514_-	lambda gpG-like protein	NA	K7PJU9	Enterobacteria_phage	61.4	7.6e-33
VEE43028.1|4841522_4842257_-|tail	major tail subunit	tail	Q9MCA5	Pseudomonas_phage	50.2	1.5e-51
VEE43029.1|4842322_4842691_-	Protein of uncharacterised function (DUF3168)	NA	Q9MCA6	Pseudomonas_phage	61.5	1.8e-37
VEE43030.1|4842687_4843173_-	HK97 family phage protein	NA	Q9MCA7	Pseudomonas_phage	76.2	3.3e-55
VEE43031.1|4843165_4843507_-|head,tail	head-tail adaptor	head,tail	A0A1J0GUY4	Halomonas_phage	49.1	4.5e-19
VEE43032.1|4843506_4843983_-	Gp7	NA	G3ENA1	Psychrobacter_phage	35.7	2.9e-16
VEE43033.1|4843986_4844211_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE43034.1|4844252_4845509_-|capsid	HK97 family phage major capsid protein	capsid	Q6JIM7	Burkholderia_virus	48.8	3.9e-92
VEE43035.1|4845518_4846220_-	primosome assembly protein PriA	NA	Q6JIM8	Burkholderia_virus	62.4	3.2e-72
VEE43036.1|4846216_4847551_-|portal	HK97 family phage portal protein	portal	Q6JIM9	Burkholderia_virus	56.1	6.9e-132
VEE43037.1|4847543_4847708_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE43038.1|4847719_4849429_-|terminase	terminase	terminase	A0A0R6PKH7	Moraxella_phage	68.2	5.2e-233
VEE43039.1|4849428_4849812_-|terminase	phage terminase small subunit	terminase	Q9XJT7	Pseudomonas_phage	44.2	3.9e-19
VEE43040.1|4849939_4850308_-|holin	phage holin	holin	H2BDK0	Pseudomonas_virus	59.8	4.9e-19
VEE43041.1|4850298_4850481_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE43042.1|4850541_4850865_-|holin	holin	holin	A0A1W6JTC7	Pseudomonas_phage	63.2	7.7e-29
VEE43043.1|4851064_4851406_-	antitermination protein Q	NA	A0A2D1GNB4	Pseudomonas_phage	80.7	1.0e-47
VEE43044.1|4851416_4851734_-	Uncharacterised protein	NA	A0A2D1GNG3	Pseudomonas_phage	61.0	2.4e-30
VEE43045.1|4851730_4852051_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE43046.1|4852047_4853337_-|integrase	phage integrase	integrase	A0A2D1GND4	Pseudomonas_phage	53.4	6.1e-117
VEE43047.1|4853333_4853756_-	VRR-NUC domain-containing protein	NA	A0A2D1GNH3	Pseudomonas_phage	67.9	2.9e-44
VEE43048.1|4853752_4854049_-	82 prophage-derived uncharacterized protein ybcO	NA	A0A220NQY2	Salmonella_phage	69.7	2.9e-30
VEE43049.1|4854051_4854864_-	IstB domain-containing protein ATP-binding protein	NA	A0A2H4J3E5	uncultured_Caudovirales_phage	67.9	2.3e-98
VEE43050.1|4854853_4855648_-	phage replication protein O	NA	Q9MC55	Pseudomonas_phage	43.2	1.2e-19
VEE43051.1|4855849_4856026_-	Cro/CI family transcriptional regulator	NA	A0A0S2SYB8	Pseudomonas_phage	62.7	3.2e-13
VEE43052.1|4856114_4856966_+	Cro/CI family transcriptional regulator	NA	A0A0S2SYF7	Pseudomonas_phage	52.1	1.0e-75
VEE43053.1|4857030_4857351_-	Protein of uncharacterised function (DUF1654)	NA	A0A0S2SYC9	Pseudomonas_phage	46.3	5.7e-16
VEE43054.1|4857682_4858120_+	tciA	NA	A0A2H4P7E3	Pseudomonas_phage	56.9	2.2e-34
VEE43055.1|4858116_4858311_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE43056.1|4858841_4859060_+	LuxR family transcriptional regulator	NA	A0A2H4JA92	uncultured_Caudovirales_phage	66.7	9.5e-15
VEE43057.1|4859078_4859348_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE43058.1|4859344_4859803_+	Uncharacterised protein	NA	A0A2H4J101	uncultured_Caudovirales_phage	60.5	5.8e-46
VEE43059.1|4859884_4860271_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE43060.1|4860230_4860464_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE43061.1|4860589_4861135_+	Uncharacterised protein	NA	J9Q748	Salmonella_phage	36.2	1.3e-20
VEE43062.1|4861487_4862072_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE43063.1|4862138_4863059_+	methyltransferase	NA	Q6J1P4	Burkholderia_virus	59.7	8.2e-108
VEE43064.1|4863177_4863474_+	Uncharacterised protein	NA	A0A2H4J2C6	uncultured_Caudovirales_phage	80.0	4.4e-39
VEE43065.1|4863487_4864354_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE43066.1|4864437_4865190_+	Uncharacterised protein	NA	W6MWX6	Pseudomonas_phage	55.5	2.6e-67
VEE43067.1|4865186_4865444_+	Uncharacterised protein	NA	A0A2H4J399	uncultured_Caudovirales_phage	66.3	1.1e-20
VEE43068.1|4865446_4865668_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE43069.1|4865664_4866048_+	Uncharacterised protein	NA	A0A125RNP6	Pseudomonas_phage	37.8	1.2e-12
VEE43070.1|4866044_4866527_+	methyltransferase	NA	A0A0N7IRF6	Acinetobacter_phage	63.4	4.5e-57
VEE43071.1|4866583_4866901_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE43072.1|4866934_4867177_+	excisionase	NA	NA	NA	NA	NA
VEE43073.1|4867157_4868264_+|integrase	phage integrase	integrase	A0A0U4JIT5	Pseudomonas_phage	70.1	2.1e-142
VEE43074.1|4868253_4868679_+	arsenate reductase-like protein	NA	NA	NA	NA	NA
VEE43075.1|4868710_4869745_+	2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase	NA	NA	NA	NA	NA
VEE43076.1|4869826_4871032_+	class V aminotransferase	NA	Q2XUY6	environmental_halophage	36.8	2.9e-68
4875154:4875182	attR	GTACCTGTGGGAGCGGGCGTGCCCGCGAA	NA	NA	NA	NA
>prophage 12
LR134299	Pseudomonas putida strain NCTC13186 genome assembly, chromosome: 1	6134366	6068130	6109166	6134366	holin,transposase	Vibrio_phage(33.33%)	39	NA	NA
VEE44254.1|6068130_6069834_+|holin	choline/carnitine/betaine transporter family pro	holin	A0A2I7QNT1	Vibrio_phage	29.3	3.3e-25
VEE44256.1|6069900_6070809_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	34.4	1.2e-45
VEE44258.1|6071730_6072063_+	topoisomerase II	NA	NA	NA	NA	NA
VEE44260.1|6072129_6072585_-	metal-binding protein	NA	NA	NA	NA	NA
VEE44262.1|6072574_6073318_-	cytochrome c family protein	NA	NA	NA	NA	NA
VEE44264.1|6073366_6074446_-	copper resistance B	NA	NA	NA	NA	NA
VEE44266.1|6074435_6074753_-	CopA family copper resistance protein	NA	NA	NA	NA	NA
VEE44268.1|6074767_6076777_-	CopA family copper resistance protein	NA	NA	NA	NA	NA
VEE44269.1|6076960_6077167_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE44271.1|6077358_6077718_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE44273.1|6077910_6078588_+	two component heavy metal response transcriptional regulator	NA	W8CYM9	Bacillus_phage	32.6	3.3e-29
VEE44275.1|6078590_6079994_+	heavy metal sensor signal transduction histidine kinase	NA	NA	NA	NA	NA
VEE44277.1|6080470_6081724_+	CzcC family heavy metal RND efflux outer membrane protein	NA	NA	NA	NA	NA
VEE44279.1|6081720_6083193_+	CzcB family heavy metal RND efflux membrane fusion protein	NA	NA	NA	NA	NA
VEE44281.1|6083189_6086348_+	CzcA family heavy metal RND efflux protein	NA	NA	NA	NA	NA
VEE44283.1|6086344_6086686_+	heavy metal efflux system protein	NA	NA	NA	NA	NA
VEE44285.1|6087704_6088364_-	S-isoprenylcysteine methyltransferase-like protein	NA	NA	NA	NA	NA
VEE44287.1|6088360_6088636_-	Protein of uncharacterised function (DUF2933)	NA	NA	NA	NA	NA
VEE44289.1|6088661_6089117_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE44291.1|6089252_6090275_-	YVTN beta-propeller repeat-containing protein	NA	NA	NA	NA	NA
VEE44293.1|6090540_6090741_-	heavy metal transport/detoxification protein	NA	NA	NA	NA	NA
VEE44295.1|6091081_6093592_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.5	4.1e-69
VEE44297.1|6093920_6094760_+	Protein of uncharacterised function DUF43	NA	NA	NA	NA	NA
VEE44299.1|6094752_6095328_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE44301.1|6095344_6095833_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE44303.1|6095863_6097399_-|transposase	ISPpu14-like transposase, Orf3	transposase	A0A218MNE7	uncultured_virus	46.4	4.3e-117
VEE44305.1|6097462_6097798_-|transposase	transposase	transposase	NA	NA	NA	NA
VEE44307.1|6097794_6098115_-|transposase	ISPpu14-like transposase, Orf1	transposase	NA	NA	NA	NA
VEE44309.1|6098194_6098335_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE44311.1|6098320_6099076_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE44313.1|6099539_6100553_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE44315.1|6100561_6101203_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE44318.1|6101315_6101435_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE44320.1|6102455_6103244_-	Sir2 family transcriptional regulator	NA	A0A2I7S9Y2	Vibrio_phage	39.6	5.0e-13
VEE44322.1|6103451_6104108_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE44324.1|6104523_6104829_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE44326.1|6104851_6106087_-	transposition protein, TnsC-like protein	NA	NA	NA	NA	NA
VEE44328.1|6106194_6108207_-|transposase	transposase, TnsB-like protein	transposase	NA	NA	NA	NA
VEE44330.1|6108203_6109166_-|transposase	transposase, TnsA-like protein	transposase	NA	NA	NA	NA
