The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR134297	Enterococcus hirae strain NCTC12368 genome assembly, chromosome: 1	2741688	726780	734496	2741688		Streptococcus_phage(66.67%)	10	NA	NA
VEE77556.1|726780_728529_+	DNA polymerase III subunits gamma and tau	NA	A0A1U9WR94	Streptococcus_virus	41.9	9.3e-52
VEE77558.1|728553_728865_+	transcriptional regulator	NA	NA	NA	NA	NA
VEE77560.1|728888_729485_+	recombination protein RecR	NA	NA	NA	NA	NA
VEE77562.1|729548_730193_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	52.2	3.5e-57
VEE77564.1|730207_730537_+	protein from nitrogen regulatory protein P-II (GLNB) family	NA	NA	NA	NA	NA
VEE77566.1|730545_731487_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	32.3	3.4e-32
VEE77568.1|731522_732347_+	signal peptidase-like protein	NA	NA	NA	NA	NA
VEE77570.1|732339_732684_+	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	41.4	2.9e-18
VEE77572.1|733224_734091_+	tetrapyrrole methylase family protein	NA	M1PLC5	Streptococcus_phage	63.0	8.6e-91
VEE77574.1|734235_734496_+	Uncharacterised protein	NA	A0A0S2MYI8	Enterococcus_phage	52.6	6.9e-12
>prophage 2
LR134297	Enterococcus hirae strain NCTC12368 genome assembly, chromosome: 1	2741688	1002784	1043323	2741688	transposase,terminase,portal,integrase,holin	Enterococcus_phage(36.36%)	53	1001719:1001734	1028492:1028507
1001719:1001734	attL	GTCAGCAAATCATTTC	NA	NA	NA	NA
VEE79856.1|1002784_1003246_-|transposase	IS1251-like transposase	transposase	A0A1S5SBP9	Streptococcus_phage	39.1	1.4e-18
VEE79859.1|1003742_1004147_+	transcriptional regulator	NA	NA	NA	NA	NA
VEE79862.1|1004174_1004813_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
VEE79865.1|1004828_1005116_+	antibiotic biosynthesis monooxygenase family protein	NA	NA	NA	NA	NA
VEE79868.1|1005615_1007505_+	LPXTG-domain-containing protein cell wall anchor domain protein	NA	NA	NA	NA	NA
VEE79871.1|1007722_1007863_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE79874.1|1007862_1008342_-	LysM domain lipoprotein	NA	NA	NA	NA	NA
VEE79877.1|1008957_1009179_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE79880.1|1010245_1011019_-	HAD superfamily hydrolase	NA	NA	NA	NA	NA
VEE79883.1|1011161_1011497_+	integral membrane protein	NA	NA	NA	NA	NA
VEE79886.1|1011493_1012210_+	response regulator receiver domain-containing protein	NA	W8CYM9	Bacillus_phage	36.2	1.4e-33
VEE79889.1|1012209_1012485_+	sensor histidine kinase	NA	NA	NA	NA	NA
VEE79892.1|1012459_1013653_+	sensor histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	31.3	4.9e-20
VEE79894.1|1013869_1014376_-	ABC superfamily ATP binding cassette transporter, ABC protein	NA	NA	NA	NA	NA
VEE79897.1|1014362_1015094_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE79900.1|1015419_1017561_-	sulfatase	NA	W6LM83	Streptococcus_phage	56.1	9.9e-213
VEE79903.1|1017790_1018963_+	SAM-dependent methyltransferase	NA	W6LLI2	Streptococcus_phage	52.6	1.4e-104
VEE79905.1|1018976_1019726_+	3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	35.2	4.2e-25
VEE79908.1|1019749_1020238_+	EbsC protein	NA	NA	NA	NA	NA
VEE79911.1|1020335_1021589_-	HI0933-like protein	NA	A0A2H4PQX1	Staphylococcus_phage	52.9	2.5e-22
VEE79914.1|1021702_1023052_+	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
VEE79917.1|1023165_1024512_+	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
VEE79920.1|1024613_1025837_-|integrase	phage integrase family site specific recombinase	integrase	A0A0P0I3D2	Lactobacillus_phage	42.8	3.3e-80
VEE79923.1|1025993_1026599_-	prophage superinfection immunity protein	NA	A0A0P0IXE0	Lactobacillus_phage	45.8	5.9e-38
VEE79926.1|1026661_1027090_-	prophage Lp1 protein 7	NA	NA	NA	NA	NA
VEE79929.1|1027096_1027477_-	prophage Lp2 protein 9	NA	O03970	Lactobacillus_phage	35.7	5.5e-18
VEE79932.1|1027640_1027892_+	Lj965 prophage Cro-repressor	NA	NA	NA	NA	NA
VEE79936.1|1028103_1028658_+	Uncharacterised protein	NA	NA	NA	NA	NA
1028492:1028507	attR	GTCAGCAAATCATTTC	NA	NA	NA	NA
VEE79939.1|1028654_1028885_+	vrlI protein	NA	NA	NA	NA	NA
VEE79942.1|1028901_1029087_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE79945.1|1029127_1029265_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE79948.1|1029444_1030386_+	gp47	NA	D2IZK1	Enterococcus_phage	70.9	2.1e-127
VEE79951.1|1030387_1031323_+	recombination and repair protein RecT	NA	D2IYT9	Enterococcus_phage	56.3	2.0e-93
VEE79954.1|1031362_1031824_+	Restriction endonuclease	NA	A0A0R6PHK1	Moraxella_phage	41.4	3.0e-10
VEE79956.1|1031816_1032533_+	Replication initiation and membrane attachment	NA	F0PII1	Enterococcus_phage	73.8	5.7e-48
VEE79959.1|1032529_1032832_+	YopX protein	NA	A0A060ABA9	Staphylococcus_phage	38.3	5.8e-10
VEE79962.1|1032832_1033294_+	methyltransferase	NA	D2IZK8	Enterococcus_phage	78.3	3.3e-73
VEE79965.1|1033315_1033693_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE79969.1|1033812_1034010_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE79972.1|1034006_1034168_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE79975.1|1034154_1034994_-	Uncharacterised protein	NA	A0A0R6PH66	Moraxella_phage	30.4	1.1e-31
VEE79978.1|1035215_1035683_+	ArpU family transcriptional regulator	NA	D7RWH7	Brochothrix_phage	29.1	8.4e-08
VEE79980.1|1036812_1037016_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE79983.1|1037068_1037644_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE79986.1|1037824_1038658_+|terminase	Phage terminase small subunit	terminase	D2J000	Enterococcus_phage	61.8	2.0e-76
VEE79989.1|1038650_1040066_+|terminase	phage terminase large subunit domain protein	terminase	C9E2I7	Enterococcus_phage	79.9	3.6e-219
VEE79992.1|1040077_1040566_+|portal	phage portal protein	portal	NA	NA	NA	NA
VEE79995.1|1040580_1041471_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE79998.1|1041792_1042317_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE80001.1|1042329_1042722_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE80004.1|1042723_1042852_+	Phage uncharacterized protein XkdX	NA	NA	NA	NA	NA
VEE80007.1|1042898_1043120_+	putative secreted protein	NA	C9E2K9	Enterococcus_phage	60.3	1.3e-16
VEE80009.1|1043119_1043323_+|holin	holin	holin	A0A0S2MYF6	Enterococcus_phage	89.6	1.7e-26
>prophage 3
LR134297	Enterococcus hirae strain NCTC12368 genome assembly, chromosome: 1	2741688	1306883	1313541	2741688		Enterococcus_phage(50.0%)	8	NA	NA
VEE80663.1|1306883_1307378_-	Nucleoside 2-deoxyribosyltransferase	NA	A0A1W6JK28	Lactococcus_phage	60.7	7.2e-42
VEE80666.1|1307394_1308615_-	acetyltransferase	NA	NA	NA	NA	NA
VEE80669.1|1308761_1310597_+	GTP-binding protein LepA	NA	E4ZFJ7	Streptococcus_phage	24.4	1.2e-20
VEE80672.1|1310959_1311232_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE80675.1|1311388_1312198_+	glycerophosphoryl diester phosphodiesterase	NA	M1HTS7	Paramecium_bursaria_Chlorella_virus	29.5	7.7e-09
VEE80678.1|1312262_1312484_+	putative secreted protein	NA	A0A0S2MYL7	Enterococcus_phage	58.9	1.5e-15
VEE80681.1|1312686_1312803_+	endolysin	NA	D2IYY2	Enterococcus_phage	72.2	1.1e-06
VEE80684.1|1313061_1313541_+	endolysin	NA	D2J021	Enterococcus_phage	67.3	2.5e-55
>prophage 4
LR134297	Enterococcus hirae strain NCTC12368 genome assembly, chromosome: 1	2741688	1767601	1819800	2741688	tail,capsid,protease,terminase,tRNA,integrase	Enterococcus_phage(23.26%)	79	1798486:1798505	1822977:1822996
VEE81977.1|1767601_1768150_-|protease	ATP-dependent protease HslVU	protease	NA	NA	NA	NA
VEE81980.1|1768189_1769089_-|integrase	phage integrase family site specific recombinase	integrase	A0A0K2CP59	Brevibacillus_phage	30.7	1.4e-35
VEE81983.1|1769371_1770694_-|tRNA	tRNA (uracil-5-)-methyltransferase	tRNA	NA	NA	NA	NA
VEE81986.1|1770713_1772792_-	DNA topoisomerase I	NA	A0A2P1EID3	Megavirus	37.2	1.1e-96
VEE81988.1|1772912_1773770_-	rossmann fold nucleotide-binding protein Smf	NA	NA	NA	NA	NA
VEE81991.1|1773831_1774599_-	ribonuclease HII	NA	E3T5H8	Cafeteria_roenbergensis_virus	42.2	1.0e-26
VEE81994.1|1774591_1775452_-	ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
VEE81997.1|1776121_1776553_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE82000.1|1776549_1776951_-	two-component response regulator	NA	NA	NA	NA	NA
VEE82003.1|1777326_1777734_+	glyoxalase family protein	NA	NA	NA	NA	NA
VEE82006.1|1777816_1778287_-	lipoate-protein ligase A	NA	NA	NA	NA	NA
VEE82009.1|1778283_1778829_-	lipoate-protein ligase A	NA	NA	NA	NA	NA
VEE82012.1|1779053_1779605_-	signal peptidase I	NA	NA	NA	NA	NA
VEE82015.1|1779726_1779948_-	DUF1250 family protein	NA	NA	NA	NA	NA
VEE82018.1|1779944_1780280_-	methionine sulfoxide reductase A	NA	NA	NA	NA	NA
VEE82021.1|1780954_1781464_+	Uncharacterized phage-associated protein	NA	M9QX37	Staphylococcus_phage	42.9	1.3e-33
VEE82024.1|1781464_1781839_+	Uncharacterised protein	NA	M9QRV7	Staphylococcus_phage	35.0	4.1e-05
VEE82027.1|1782193_1783210_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A0S2MYH4	Enterococcus_phage	65.8	4.3e-49
VEE82030.1|1783202_1783619_-	phage Holin 4 family protein	NA	A0A097QQ04	Enterococcus_phage	59.5	7.1e-35
VEE82033.1|1783657_1783918_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE82036.1|1783914_1784361_-	Uncharacterised protein	NA	A0A1I9KKA6	Lactobacillus_phage	34.1	1.3e-13
VEE82039.1|1784372_1784759_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE82042.1|1784801_1787939_-	phage minor structural protein N-terminal domain protein	NA	A0A2H4JEQ6	uncultured_Caudovirales_phage	38.2	4.5e-81
VEE82045.1|1787935_1788658_-|tail	phage putative tail component protein	tail	A0A1J1JA76	Escherichia_phage	27.9	2.7e-21
VEE82048.1|1788657_1792158_-	ABC superfamily ATP binding cassette transporter permease subunit	NA	Q938K3	Temperate_phage	40.7	3.2e-11
VEE82051.1|1792150_1792732_-	phage Gp15 protein	NA	Q5YA62	Bacillus_phage	49.5	3.2e-41
VEE82055.1|1792740_1793190_-	Uncharacterised protein	NA	B3GW11	Streptococcus_phage	31.5	2.7e-11
VEE82058.1|1793226_1793673_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE82061.1|1793749_1794208_-|tail	major tail shaft protein	tail	Q5YA64	Bacillus_phage	49.7	3.4e-30
VEE82064.1|1794204_1794606_-	phage protein	NA	Q5YA65	Bacillus_phage	55.7	7.1e-40
VEE82067.1|1794605_1794932_-|capsid	minor capsid protein, putative	capsid	Q5YA66	Bacillus_phage	54.4	1.1e-27
VEE82070.1|1794931_1795273_-|capsid	minor capsid protein, putative	capsid	Q5YA67	Bacillus_phage	59.3	1.7e-34
VEE82073.1|1795266_1795683_-	protein gp8	NA	Q5YA68	Bacillus_phage	55.6	9.0e-30
VEE82076.1|1795679_1796618_-	HeH/LEM domain	NA	NA	NA	NA	NA
VEE82079.1|1796688_1797549_-|capsid	major capsid protein	capsid	U3PDP8	Lactobacillus_phage	61.6	1.2e-97
VEE82082.1|1797551_1798121_-	scaffolding protein	NA	X2CYF9	Lactobacillus_phage	33.9	2.3e-15
VEE82085.1|1798233_1799394_-|capsid	minor capsid protein	capsid	Q5YA73	Bacillus_phage	59.3	1.6e-132
1798486:1798505	attL	TTTATTTTCTTTTTCGTTGA	NA	NA	NA	NA
VEE82088.1|1799393_1800893_-|capsid	phage minor capsid protein	capsid	A0A1S5SAH6	Streptococcus_phage	42.5	1.5e-106
VEE82091.1|1800908_1802201_-|terminase	phage terminase, large subunit, PBSX family	terminase	A0A0B5CYJ6	Listeria_phage	58.7	1.1e-147
VEE82094.1|1802166_1803033_-|terminase	Phage terminase small subunit	terminase	D2IYW0	Enterococcus_phage	61.6	7.3e-82
VEE82097.1|1803630_1804029_-	phage transcriptional regulator, ArpU family	NA	C9E2P5	Enterococcus_phage	46.7	2.6e-26
VEE82100.1|1804126_1804822_-	antirepressor	NA	R9QMT9	Lactococcus_phage	51.8	4.4e-37
VEE82103.1|1804793_1804931_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE82106.1|1805087_1805303_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE82109.1|1805309_1805540_-	Uncharacterised protein	NA	A0A0S2MYD2	Enterococcus_phage	54.9	2.1e-12
VEE82112.1|1805555_1805753_-	Uncharacterised protein	NA	A0A0C5K8R7	Enterococcus_phage	67.3	7.0e-17
VEE82115.1|1805730_1805952_-	Uncharacterised protein	NA	D2IYV2	Enterococcus_phage	47.1	6.7e-08
VEE82118.1|1805951_1806182_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE82121.1|1806168_1806573_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE82124.1|1806575_1807073_-	phage protein, putative	NA	W6LMV2	Streptococcus_phage	46.2	2.1e-09
VEE82127.1|1807069_1807231_-	YopX protein	NA	NA	NA	NA	NA
VEE82130.1|1807227_1807674_-	YopX protein	NA	B5SP14	Lactococcus_phage	40.3	2.7e-16
VEE82133.1|1807670_1807880_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE82136.1|1807876_1808191_-	MazG nucleotide pyrophosphohydrolase domain protein	NA	D2IZY1	Enterococcus_phage	72.7	3.9e-33
VEE82139.1|1808178_1808499_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE82142.1|1808644_1808827_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE82145.1|1808891_1809743_-	DNA replication protein DnaC	NA	A0A0U4K4W7	Exiguobacterium_phage	29.2	1.1e-16
VEE82148.1|1809757_1809928_-	Phage replication initiation	NA	Q6J1V6	Lactobacillus_phage	50.0	4.1e-05
VEE82151.1|1810148_1810547_-	DnaD domain protein	NA	A8YQM0	Lactobacillus_phage	55.1	1.8e-35
VEE82154.1|1810633_1811176_-	Protein of uncharacterised function (DUF669)	NA	E9LUU2	Lactobacillus_phage	49.1	3.2e-35
VEE82157.1|1811177_1811843_-	phage nucleotide-binding protein	NA	O03911	Lactobacillus_phage	68.1	1.3e-83
VEE82160.1|1811839_1812358_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE82163.1|1812408_1812600_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE82166.1|1812596_1812932_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE82169.1|1812915_1813260_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE82172.1|1813287_1813512_-	transcriptional regulator, y4mF family	NA	NA	NA	NA	NA
VEE82175.1|1813616_1813820_+	helix-turn-helix domain-containing protein	NA	X2CXD8	Lactobacillus_phage	49.2	7.3e-09
VEE82178.1|1813859_1814045_-	Uncharacterised protein	NA	D2IZW5	Enterococcus_phage	95.1	6.2e-23
VEE82181.1|1814124_1814658_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE82184.1|1814949_1815174_+	Uncharacterised protein	NA	E8ZD70	Streptococcus_phage	81.1	2.2e-27
VEE82187.1|1815170_1815326_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE82190.1|1815383_1815701_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE82193.1|1815945_1816101_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE82196.1|1816113_1816353_-	Predicted transcriptional regulator	NA	NA	NA	NA	NA
VEE82199.1|1816514_1817096_+	Cro/CI family transcriptional regulator	NA	A0A139ZPI6	Marinitoga_camini_virus	42.3	5.2e-07
VEE82202.1|1817246_1817447_+	Uncharacterised protein	NA	D2J022	Enterococcus_phage	66.7	5.0e-18
VEE82204.1|1817512_1817827_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE82207.1|1817847_1818342_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE82210.1|1818669_1819800_+|integrase	integrase	integrase	A0A1S5S7K9	Streptococcus_phage	41.3	3.3e-74
1822977:1822996	attR	TTTATTTTCTTTTTCGTTGA	NA	NA	NA	NA
>prophage 5
LR134297	Enterococcus hirae strain NCTC12368 genome assembly, chromosome: 1	2741688	2376706	2392461	2741688	holin,plate,tail	Enterococcus_phage(36.36%)	14	NA	NA
VEE83684.1|2376706_2377939_+	fic family protein	NA	Q9AZ49	Lactococcus_phage	37.7	1.6e-66
VEE83687.1|2377973_2378990_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1G5SA77	Enterococcus_phage	65.9	9.8e-62
VEE83690.1|2379000_2379198_-|holin	holin	holin	A0A0S2MYF6	Enterococcus_phage	87.5	3.5e-24
VEE83694.1|2379221_2379515_-	phage protein	NA	NA	NA	NA	NA
VEE83697.1|2379552_2379690_-	Phage uncharacterized protein XkdX	NA	NA	NA	NA	NA
VEE83700.1|2379691_2380138_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE83702.1|2380149_2382294_-	phage pre-neck appendage-like protein	NA	A0A096XSZ6	Enterococcus_phage	42.3	8.7e-60
VEE83705.1|2382293_2383343_-|plate,tail	Putative tail or base plate protein gp19, Bacteriophage	plate,tail	A0A059T661	Listeria_phage	33.3	1.6e-19
VEE83708.1|2383342_2384362_-	protein gp18	NA	Q9T1A5	Listeria_phage	55.0	5.0e-106
VEE83711.1|2384370_2385201_-	protein gp17	NA	A8ASK7	Listeria_phage	40.8	5.8e-52
VEE83714.1|2385211_2389852_-|tail	phage tail tape measure protein TP901	tail	A0A0M5M3L4	Enterococcus_phage	73.3	0.0e+00
VEE83717.1|2389823_2390483_-	phage nucleotide-binding protein	NA	A8YQL5	Lactobacillus_phage	67.0	3.4e-79
VEE83720.1|2390520_2391282_+	site-specific tyrosine recombinase XerC-family	NA	A0A0B5CTW8	Listeria_phage	36.1	5.9e-27
VEE83723.1|2391873_2392461_+	DUF159 family protein	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	24.4	4.7e-08
