assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900636605.1_42912_F02	LR134296	Escherichia coli strain NCTC9041 genome assembly, chromosome: 1	1	963284-963617	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	28,29,29	0	0	NA	NA	I-E:I-E:I-E	5,5,5	5	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA|47aa|up_1|LR134296.1_961993_962134_-,NA|47aa|down_1|LR134296.1_964807_964948_+	NA|434aa|up_9|LR134296.1_952690_953992_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|LR134296.1_954039_956274_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|LR134296.1_956351_956600_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|LR134296.1_956599_956935_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|LR134296.1_957005_957797_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|LR134296.1_958024_959662_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|LR134296.1_959749_961048_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|LR134296.1_961107_961980_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|LR134296.1_961993_962134_-	NA	NA|224aa|up_0|LR134296.1_962272_962944_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|371aa|down_0|LR134296.1_963672_964785_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|47aa|down_1|LR134296.1_964807_964948_+	NA	NA|245aa|down_2|LR134296.1_965394_966129_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_3|LR134296.1_966202_967915_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|down_4|LR134296.1_967914_969714_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|122aa|down_5|LR134296.1_970029_970395_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|424aa|down_6|LR134296.1_970472_971744_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|down_7|LR134296.1_971734_971995_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|down_8|LR134296.1_972011_972587_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|down_9|LR134296.1_972734_973595_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
GCA_900636605.1_42912_F02	LR134296	Escherichia coli strain NCTC9041 genome assembly, chromosome: 1	2	991000-992308	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	21,21,21	21	TypeI-E	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA|47aa|up_9|LR134296.1_981907_982048_-,NA	NA|47aa|up_9|LR134296.1_981907_982048_-	NA	NA|371aa|up_8|LR134296.1_982070_983183_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	cas3|845aa|up_7|LR134296.1_983421_985956_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|257aa|up_6|LR134296.1_985933_986704_+	cd09669, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|179aa|up_5|LR134296.1_986700_987237_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|352aa|up_4|LR134296.1_987248_988304_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|LR134296.1_988314_989061_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|LR134296.1_989042_989693_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|LR134296.1_989689_990613_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|LR134296.1_990609_990903_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|LR134296.1_992390_993428_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|LR134296.1_993679_994588_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|LR134296.1_994589_996017_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|LR134296.1_996016_996622_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|LR134296.1_996671_996995_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|LR134296.1_997188_997500_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|LR134296.1_997518_998229_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|LR134296.1_998228_998708_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|LR134296.1_998704_999754_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|LR134296.1_999734_1000496_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_900636605.1_42912_F02	LR134296	Escherichia coli strain NCTC9041 genome assembly, chromosome: 1	3	1501007-1501124	3	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|300aa|up_9|LR134296.1_1490490_1491390_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_8|LR134296.1_1491582_1492773_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_7|LR134296.1_1492769_1494029_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_6|LR134296.1_1494018_1495647_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_5|LR134296.1_1495919_1497278_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_4|LR134296.1_1497282_1498359_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|69aa|up_3|LR134296.1_1498400_1498607_-	PRK09729, PRK09729, hypothetical protein; Provisional	NA|217aa|up_2|LR134296.1_1498821_1499472_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|LR134296.1_1499525_1499780_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|LR134296.1_1499779_1500910_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|LR134296.1_1501143_1503429_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|LR134296.1_1504124_1507877_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|LR134296.1_1508004_1508727_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|LR134296.1_1508873_1511501_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|LR134296.1_1511649_1513338_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|LR134296.1_1513334_1513958_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_6|LR134296.1_1514101_1518496_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|LR134296.1_1518496_1520146_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|LR134296.1_1520150_1520927_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|LR134296.1_1521000_1522185_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCA_900636605.1_42912_F02	LR134296	Escherichia coli strain NCTC9041 genome assembly, chromosome: 1	4	2142784-2142907	4	CRISPRCasFinder	no	DEDDh	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|79aa|up_9|LR134296.1_2131691_2131928_-	PRK15396, PRK15396, major outer membrane lipoprotein	NA|471aa|up_8|LR134296.1_2132238_2133651_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_7|LR134296.1_2134207_2134417_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_6|LR134296.1_2134871_2135498_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_5|LR134296.1_2135518_2137621_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_4|LR134296.1_2137633_2138272_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_3|LR134296.1_2138335_2139004_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_2|LR134296.1_2139000_2139786_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|255aa|up_1|LR134296.1_2139837_2140602_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_0|LR134296.1_2140613_2142218_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|419aa|down_0|LR134296.1_2143221_2144478_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|LR134296.1_2144518_2145892_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|LR134296.1_2146106_2146748_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|LR134296.1_2146787_2147936_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|LR134296.1_2148226_2149438_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|LR134296.1_2149550_2150483_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|LR134296.1_2150479_2151505_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|390aa|down_7|LR134296.1_2152058_2153228_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_8|LR134296.1_2153462_2154044_-	PRK10543, PRK10543, superoxide dismutase [Fe]	NA|272aa|down_9|LR134296.1_2154171_2154987_-	pfam00877, NLPC_P60, NlpC/P60 family
GCA_900636605.1_42912_F02	LR134296	Escherichia coli strain NCTC9041 genome assembly, chromosome: 1	6	3116864-3117008	6	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA|64aa|up_9|LR134296.1_3110408_3110600_+,NA|205aa|up_5|LR134296.1_3112120_3112735_+,NA|40aa|up_4|LR134296.1_3113028_3113148_+,NA|56aa|up_2|LR134296.1_3113906_3114074_+,NA	NA|64aa|up_9|LR134296.1_3110408_3110600_+	NA	NA|140aa|up_8|LR134296.1_3110786_3111206_+	TIGR01913, Uncharacterized_protein_UU154, phage recombination protein Bet	NA|74aa|up_7|LR134296.1_3111352_3111574_+	PHA00080, PHA00080, DksA-like zinc finger domain containing protein	NA|84aa|up_6|LR134296.1_3111570_3111822_+	pfam13935, Ead_Ea22, Ead/Ea22-like protein	NA|205aa|up_5|LR134296.1_3112120_3112735_+	NA	NA|40aa|up_4|LR134296.1_3113028_3113148_+	NA	NA|143aa|up_3|LR134296.1_3113395_3113824_+	pfam10711, DUF2513, Hypothetical protein (DUF2513)	NA|56aa|up_2|LR134296.1_3113906_3114074_+	NA	NA|357aa|up_1|LR134296.1_3114309_3115380_+	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|428aa|up_0|LR134296.1_3115514_3116798_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|LR134296.1_3117031_3119293_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|LR134296.1_3119475_3120909_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|LR134296.1_3120984_3122037_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|LR134296.1_3122220_3123174_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|LR134296.1_3123214_3124210_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|LR134296.1_3124364_3125183_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|LR134296.1_3125183_3126242_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|LR134296.1_3126244_3126934_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|LR134296.1_3126933_3127707_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|LR134296.1_3127873_3128023_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCA_900636605.1_42912_F02	LR134296	Escherichia coli strain NCTC9041 genome assembly, chromosome: 1	7	3348723-3348819	7	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|231aa|up_9|LR134296.1_3340509_3341202_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|LR134296.1_3341421_3341964_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|321aa|up_7|LR134296.1_3342347_3343310_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|LR134296.1_3343311_3343524_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|LR134296.1_3343631_3344153_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|LR134296.1_3344188_3345574_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|LR134296.1_3345747_3346242_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|LR134296.1_3346244_3346967_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|LR134296.1_3347084_3347594_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|LR134296.1_3347590_3348658_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|LR134296.1_3348852_3349746_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|LR134296.1_3349742_3350558_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|LR134296.1_3350568_3351828_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|LR134296.1_3351837_3353505_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|LR134296.1_3353821_3354871_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|LR134296.1_3354892_3356128_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|LR134296.1_3356138_3356924_+	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|382aa|down_7|LR134296.1_3357151_3358297_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|LR134296.1_3358318_3359620_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|LR134296.1_3359676_3361038_-	PRK08044, PRK08044, allantoinase AllB
GCA_900636605.1_42912_F02	LR134296	Escherichia coli strain NCTC9041 genome assembly, chromosome: 1	8	3650130-3650385	3	PILER-CR	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	CATCAGGCACCGTGCACCGGACGCCGGATGCGGCGTAAACGCCTTATCCGGCCT	54	1	1	3650301-3650364	LR134296.1_3650386-3650449	NA	2	2	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA|326aa|up_2|LR134296.1_3646737_3647715_-,NA	NA|156aa|up_9|LR134296.1_3640565_3641033_-	pfam03748, FliL, Flagellar basal body-associated protein FliL	NA|354aa|up_8|LR134296.1_3641040_3642102_-	cd17470, T3SS_Flik_C, C-terminal domain of flagellar hook-length control protein FliK and similar domains	NA|104aa|up_7|LR134296.1_3642098_3642410_-	PRK06064, PRK06064, thiolase domain-containing protein	NA|131aa|up_6|LR134296.1_3642414_3642807_-	pfam02561, FliS, Flagellar protein FliS	NA|439aa|up_5|LR134296.1_3642829_3644146_-	PRK08032, fliD, flagellar capping protein; Reviewed	NA|305aa|up_4|LR134296.1_3644436_3645351_-	NF033376, flg_lateral_LafA, lateral flagellin LafA	NA|281aa|up_3|LR134296.1_3645836_3646679_+	COG3710, CadC, DNA-binding winged-HTH domains [Transcription]	NA|326aa|up_2|LR134296.1_3646737_3647715_-	NA	NA|310aa|up_1|LR134296.1_3647731_3648661_-	PRK07192, flgL, flagellar hook-associated protein FlgL; Reviewed	NA|459aa|up_0|LR134296.1_3648675_3650052_-	PRK07191, flgK, flagellar hook-associated protein FlgK; Validated	NA|100aa|down_0|LR134296.1_3650473_3650773_-	PRK12708, flgJ, peptidoglycan hydrolase; Reviewed	NA|222aa|down_1|LR134296.1_3651887_3652553_-	PRK12407, flgH, flagellar basal body L-ring protein FlgH	NA|262aa|down_2|LR134296.1_3652756_3653542_-	PRK12693, flgG, flagellar basal body rod protein FlgG; Provisional	NA|246aa|down_3|LR134296.1_3653620_3654358_-	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed	NA|401aa|down_4|LR134296.1_3654357_3655560_-	PRK06803, flgE, flagellar basal body protein FlaE	NA|238aa|down_5|LR134296.1_3655703_3656417_-	PRK09619, flgD, flagellar hook assembly protein FlgD	NA|144aa|down_6|LR134296.1_3656416_3656848_-	PRK06802, flgC, flagellar basal body rod protein FlgC; Reviewed	NA|112aa|down_7|LR134296.1_3656850_3657186_-	PRK12685, flgB, flagellar basal body rod protein FlgB; Reviewed	NA|246aa|down_8|LR134296.1_3657267_3658005_+	PRK06804, flgA, flagellar basal body P-ring formation protein FlgA	NA|93aa|down_9|LR134296.1_3658085_3658364_+	TIGR03824, FlgM_jcvi, flagellar biosynthesis anti-sigma factor FlgM
GCA_900636605.1_42912_F02	LR134296	Escherichia coli strain NCTC9041 genome assembly, chromosome: 1	9	3893386-3893527	8	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	GCTGGAGAGCAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGA	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|96aa|up_9|LR134296.1_3882377_3882665_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_8|LR134296.1_3882661_3883948_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_7|LR134296.1_3883998_3884940_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_6|LR134296.1_3884954_3885725_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|up_5|LR134296.1_3886197_3887712_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|up_4|LR134296.1_3887742_3888885_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|up_3|LR134296.1_3889013_3890231_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|up_2|LR134296.1_3890304_3891858_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|up_1|LR134296.1_3891966_3892752_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|up_0|LR134296.1_3892757_3893348_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_0|LR134296.1_3893556_3893952_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_1|LR134296.1_3894213_3897435_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_2|LR134296.1_3897452_3898601_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_3|LR134296.1_3899056_3899878_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|305aa|down_4|LR134296.1_3900044_3900959_-	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional	NA|317aa|down_5|LR134296.1_3901024_3901975_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|150aa|down_6|LR134296.1_3901976_3902426_-	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional	NA|165aa|down_7|LR134296.1_3902550_3903045_-	PRK00376, lspA, lipoprotein signal peptidase	NA|939aa|down_8|LR134296.1_3903044_3905861_-	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|314aa|down_9|LR134296.1_3905903_3906845_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase
GCA_900636605.1_42912_F02	LR134296	Escherichia coli strain NCTC9041 genome assembly, chromosome: 1	10	4086729-4086878	9	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	54	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA|551aa|down_6|LR134296.1_4093992_4095645_-	NA|340aa|up_9|LR134296.1_4074919_4075939_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|188aa|up_8|LR134296.1_4075942_4076506_-	PRK09825, idnK, gluconokinase	NA|344aa|up_7|LR134296.1_4076722_4077754_+	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|255aa|up_6|LR134296.1_4077777_4078542_+	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|440aa|up_5|LR134296.1_4078606_4079926_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|333aa|up_4|LR134296.1_4079992_4080991_+	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|501aa|up_3|LR134296.1_4081068_4082571_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|LR134296.1_4082731_4083814_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|360aa|up_1|LR134296.1_4083813_4084893_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|LR134296.1_4085180_4086692_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|LR134296.1_4087045_4087489_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|LR134296.1_4087488_4090344_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|399aa|down_2|LR134296.1_4090399_4091596_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|168aa|down_3|LR134296.1_4091788_4092292_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_4|LR134296.1_4092337_4092754_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_5|LR134296.1_4092915_4093920_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|551aa|down_6|LR134296.1_4093992_4095645_-	NA	NA|151aa|down_7|LR134296.1_4095767_4096220_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|198aa|down_8|LR134296.1_4096364_4096958_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|238aa|down_9|LR134296.1_4097028_4097742_+	PRK12742, PRK12742, SDR family oxidoreductase
