The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR134296	Escherichia coli strain NCTC9041 genome assembly, chromosome: 1	4693367	999734	1010250	4693367	tRNA	Escherichia_phage(55.56%)	11	NA	NA
VEE30398.1|999734_1000496_+	stationary phase survival protein SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	48.0	3.4e-59
VEE30401.1|1000489_1001116_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	49.7	5.7e-36
VEE30404.1|1001255_1002395_+	lipoprotein NlpD	NA	D7RWE0	Brochothrix_phage	35.6	1.7e-06
VEE30407.1|1002457_1003450_+	RNA polymerase sigma factor RpoS	NA	F4YCU2	Synechococcus_phage	31.4	3.7e-29
VEE30410.1|1003543_1004908_-	inner membrane permease YgbN	NA	NA	NA	NA	NA
VEE30413.1|1004996_1005773_-	hydroxypyruvate isomerase	NA	NA	NA	NA	NA
VEE30416.1|1005777_1006416_-	aldolase	NA	A0A077SK32	Escherichia_phage	75.0	1.4e-82
VEE30419.1|1006412_1007675_-|tRNA	paral putative tRNA synthase	tRNA	A0A077SLJ7	Escherichia_phage	61.4	1.7e-135
VEE30422.1|1007671_1008580_-	oxidoreductase YgbJ	NA	A0A077SLF7	Escherichia_phage	76.5	3.0e-118
VEE30424.1|1008775_1009543_+	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	56.3	7.4e-70
VEE30427.1|1009593_1010250_-	serine/threonine-specific protein phosphatase 2	NA	A0A222YWF0	Escherichia_phage	46.3	6.2e-49
>prophage 2
LR134296	Escherichia coli strain NCTC9041 genome assembly, chromosome: 1	4693367	1629610	1639054	4693367		Enterobacteria_phage(85.71%)	10	NA	NA
VEE31978.1|1629610_1630537_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.8	2.8e-23
VEE31981.1|1630541_1631273_+	ABC transporter permease	NA	NA	NA	NA	NA
VEE31984.1|1631253_1631361_-	putative inner membrane protein	NA	NA	NA	NA	NA
VEE31985.1|1631420_1632152_-	MerR family transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	99.5	9.7e-112
VEE31987.1|1632373_1634059_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	99.6	2.5e-304
VEE31989.1|1634055_1634775_+	two-component response-regulatory protein YehT	NA	NA	NA	NA	NA
VEE31991.1|1634821_1635292_+	conserved protein, DUF1456 family	NA	Q9EYF4	Enterobacteria_phage	100.0	5.2e-82
VEE31993.1|1635331_1635793_-	lipoprotein yehR	NA	Q9EYF5	Enterobacteria_phage	98.7	1.6e-75
VEE31995.1|1635917_1637945_-	zinc finger SWIM domain-containing protein	NA	Q9EYF6	Enterobacteria_phage	96.2	0.0e+00
VEE31997.1|1637893_1639054_-	von Willebrand factor type A domain protein YehP	NA	Q9EYF7	Enterobacteria_phage	97.7	6.6e-163
>prophage 3
LR134296	Escherichia coli strain NCTC9041 genome assembly, chromosome: 1	4693367	1772859	1835157	4693367	transposase,integrase	Stx2-converting_phage(40.0%)	43	1768509:1768523	1835427:1835441
1768509:1768523	attL	GGTTTGCTGCAGGGT	NA	NA	NA	NA
VEE32226.1|1772859_1773243_+|transposase	putative transposase	transposase	Q6H9S5	Enterobacteria_phage	50.0	3.0e-11
VEE32228.1|1773239_1773587_+	prophage CP-933O IS protein	NA	A0A0P0ZDM8	Stx2-converting_phage	94.8	4.5e-59
VEE32230.1|1773636_1774683_+|transposase	transposase ORF 1, IS66 family	transposase	A0A0P0ZBS5	Stx2-converting_phage	91.6	5.9e-179
VEE32232.1|1774622_1775171_+|transposase	transposase ORF 1, IS66 family	transposase	A0A0P0ZEB3	Stx2-converting_phage	82.4	5.5e-75
VEE32234.1|1776129_1776732_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE32236.1|1776825_1777032_-	InterPro motifs Prophage CP4-57 regulatory protein (AlpA)	NA	NA	NA	NA	NA
VEE32238.1|1778158_1778359_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE32240.1|1778558_1779128_+	malate transporter	NA	NA	NA	NA	NA
VEE32242.1|1779387_1779789_+	ybl85	NA	NA	NA	NA	NA
VEE32244.1|1779776_1780160_+	DNA-directed RNA polymerase, beta subunit/140 kD subunit	NA	NA	NA	NA	NA
VEE32246.1|1780470_1781850_+|transposase	transposase	transposase	NA	NA	NA	NA
VEE32248.1|1782501_1783536_-	phosphotriesterase	NA	NA	NA	NA	NA
VEE32250.1|1783538_1783802_-	Putative inner membrane protein	NA	NA	NA	NA	NA
VEE32252.1|1783895_1784504_-	Putative inner membrane protein	NA	NA	NA	NA	NA
VEE32254.1|1784560_1785319_-	cytoplasmic protein	NA	NA	NA	NA	NA
VEE32256.1|1785332_1786547_-	carbohydrate kinase	NA	NA	NA	NA	NA
VEE32258.1|1786742_1786859_-|transposase	putative transposase, ISEc23	transposase	A0A0P0ZBS5	Stx2-converting_phage	71.4	1.2e-08
VEE32260.1|1788604_1789147_+	bifunctional adenosylcobalamin biosynthesis protein [includes adenosylcobinamide kinase; adenosylcobinamide-phosphate guanylyltransferase]	NA	NA	NA	NA	NA
VEE32262.1|1789143_1789887_+	cobalamin synthase	NA	NA	NA	NA	NA
VEE32264.1|1789898_1790978_+	Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	NA	NA	NA	NA	NA
VEE32266.1|1791039_1791975_+	ErfK/YbiS/YcfS/YnhG family protein	NA	NA	NA	NA	NA
VEE32268.1|1792432_1793350_+	Nitrogen assimilation regulatory protein nac	NA	NA	NA	NA	NA
VEE32270.1|1793451_1794402_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
VEE32272.1|1794708_1796163_+	multidrug efflux system	NA	NA	NA	NA	NA
VEE32274.1|1796789_1797506_-	putative cytoplasmic protein	NA	NA	NA	NA	NA
VEE32276.1|1797848_1799303_-	AMP nucleosidase	NA	NA	NA	NA	NA
VEE32278.1|1799404_1800721_-	shikimate transporter	NA	NA	NA	NA	NA
VEE32280.1|1801035_1802088_+	ADP-heptose--LPS heptosyltransferase-like protein	NA	NA	NA	NA	NA
VEE32282.1|1802215_1802863_-	putative invasin	NA	NA	NA	NA	NA
VEE32284.1|1802911_1804174_-	putative invasin/adhesin protein	NA	NA	NA	NA	NA
VEE32286.1|1804306_1805056_-	adhesin	NA	NA	NA	NA	NA
VEE32288.1|1805705_1807727_-	pesticin/yersiniabactin TonB-dependent receptor	NA	NA	NA	NA	NA
VEE32290.1|1807857_1809435_-	yersiniabactin siderophore biosynthetic protein	NA	NA	NA	NA	NA
VEE32292.1|1809438_1810242_-	yersiniabactin siderophore biosynthetic protein	NA	NA	NA	NA	NA
VEE32294.1|1810238_1811339_-	Thiazolinyl-S-HMWP1 reductase YbtU	NA	NA	NA	NA	NA
VEE32296.1|1811335_1820827_-	non-ribosomal peptide synthase (yersiniabactin siderophore biosynthetic protein)	NA	D0R7J2	Paenibacillus_phage	36.8	1.6e-49
VEE32298.1|1820914_1827022_-	phenyloxazoline synthase MbtB	NA	A0A2K9L3I8	Tupanvirus	27.3	3.1e-33
VEE32300.1|1827212_1828172_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
VEE32302.1|1828428_1830141_+	ABC transporter ATP-binding/permease rpotein	NA	W8CYL7	Bacillus_phage	27.6	3.1e-31
VEE32304.1|1830127_1831930_+	permease and ATP-binding protein of yersiniabactin-iron ABC transporter YbtQ	NA	W8CYL7	Bacillus_phage	26.5	6.1e-22
VEE32306.1|1831922_1833203_+	yersiniabactin-iron transporter permease YbtX	NA	NA	NA	NA	NA
VEE32308.1|1833230_1834535_+	putative chorismate binding protein	NA	NA	NA	NA	NA
VEE32309.1|1834728_1835157_-|integrase	phage integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	48.0	2.9e-23
1835427:1835441	attR	GGTTTGCTGCAGGGT	NA	NA	NA	NA
>prophage 4
LR134296	Escherichia coli strain NCTC9041 genome assembly, chromosome: 1	4693367	2216479	2263581	4693367	transposase,tail,integrase,lysis,protease	Escherichia_phage(25.0%)	51	2244836:2244850	2248125:2248139
VEE33053.1|2216479_2217301_-|protease	putative protease	protease	NA	NA	NA	NA
VEE33055.1|2217576_2217885_-	acid shock protein	NA	NA	NA	NA	NA
VEE33057.1|2218308_2219562_-	major facilitator superfamily protein	NA	NA	NA	NA	NA
VEE33059.1|2219668_2220562_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
VEE33061.1|2220696_2221917_+	protein Mlc (making large colonies protein)	NA	NA	NA	NA	NA
VEE33063.1|2222041_2222737_+	dithiobiotin synthetase	NA	NA	NA	NA	NA
VEE33065.1|2222689_2223946_-	voltage-gated ClC-type chloride channel	NA	NA	NA	NA	NA
VEE33067.1|2224140_2224755_-	anaerobic dimethyl sulfoxide reductase maturation protein (twin-arginine leader-binding protein)	NA	A0A077SLS7	Escherichia_phage	36.3	8.7e-29
VEE33069.1|2224797_2225652_-	putative dimethyl sulfoxide reductase, anchor subunit	NA	NA	NA	NA	NA
VEE33071.1|2225653_2226271_-	anaerobic dimethyl sulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	59.6	9.5e-76
VEE33073.1|2226281_2228678_-	putative dimethyl sulfoxide reductase, olydopterin dinucleotide binding subunit	NA	A0A077SK27	Escherichia_phage	48.6	4.8e-208
VEE33075.1|2228765_2231192_-	putative dimethyl sulfoxide reductase, oxidoreductase subunit	NA	A0A077SK27	Escherichia_phage	49.2	7.7e-214
VEE33077.1|2231390_2231696_-	protein	NA	NA	NA	NA	NA
VEE33079.1|2231767_2232514_+	lipoprotein	NA	NA	NA	NA	NA
VEE33081.1|2232516_2233077_-	spermidine N1-acetyltransferase	NA	NA	NA	NA	NA
VEE33083.1|2233111_2233453_-	protein	NA	NA	NA	NA	NA
VEE33085.1|2233587_2233914_+	inner membrane protein	NA	A0A218MNG8	uncultured_virus	55.6	9.9e-24
VEE33087.1|2234119_2235334_+	starvation sensing protein RspA	NA	Q6A202	Oenococcus_phage	29.0	1.4e-46
VEE33089.1|2235345_2236365_+	dehydrogenase	NA	E3SJ82	Synechococcus_phage	26.2	4.3e-17
VEE33091.1|2236552_2237833_-|integrase	defective integrase; Qin prophage	integrase	B6DZ48	Enterobacteria_phage	62.1	3.3e-155
VEE33093.1|2237867_2238104_-	putative excisionase	NA	S4TND0	Salmonella_phage	50.7	6.1e-15
VEE33095.1|2238191_2239823_-	Exonuclease RNase T and DNA polymerase III	NA	A0A192Y6E0	Salmonella_phage	56.7	5.6e-59
VEE33097.1|2239861_2240230_+|transposase	transposase IS3/IS911 family protein	transposase	NA	NA	NA	NA
VEE33099.1|2240186_2241338_+|transposase	IS30 transposase encoded within prophage CP-933T	transposase	W5R8L2	Staphylococcus_phage	36.0	2.6e-42
VEE33101.1|2241422_2242241_+|transposase	IS600 orfAB' transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.2	1.2e-65
VEE33103.1|2242265_2242580_-	Exonuclease RNase T and DNA polymerase III	NA	NA	NA	NA	NA
VEE33105.1|2242901_2243258_+	putative methyltransferase	NA	H9C170	Pectobacterium_phage	69.6	1.6e-38
VEE33107.1|2244410_2244590_+	membrane protein	NA	NA	NA	NA	NA
2244836:2244850	attL	GGAGAAGCAGGCTAT	NA	NA	NA	NA
VEE33109.1|2244924_2246238_+|integrase,transposase	putative integrase/transposase	integrase,transposase	NA	NA	NA	NA
VEE33111.1|2246674_2247007_-	Qin prophage protein	NA	NA	NA	NA	NA
VEE33113.1|2247539_2247779_+	antitoxin of the RelE-RelB toxin-antitoxin system and transcriptional repressor of relBEF	NA	A0A2H4JBG1	uncultured_Caudovirales_phage	54.4	1.6e-18
VEE33115.1|2247778_2248066_+	toxin of the RelE-RelB toxin-antitoxin system	NA	A0A2H4JBF4	uncultured_Caudovirales_phage	66.0	1.4e-29
VEE33117.1|2248137_2248293_+	putative host cell-killing modulation protein	NA	A0A0U2QV81	Escherichia_phage	96.1	1.5e-17
2248125:2248139	attR	GGAGAAGCAGGCTAT	NA	NA	NA	NA
VEE33119.1|2248509_2248761_+	putative prophage protein	NA	NA	NA	NA	NA
VEE33121.1|2249107_2250157_+	putative prophage protein	NA	A0A291AWV9	Escherichia_phage	57.3	1.3e-112
VEE33123.1|2250170_2250923_+	lambdoid prophage Qin antitermination protein Q-like protein	NA	A0A192Y5X6	Salmonella_phage	92.8	7.1e-134
VEE33125.1|2251344_2251557_-	cold shock-like protein CspF	NA	NA	NA	NA	NA
VEE33127.1|2252674_2252794_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE33129.1|2252835_2253042_+|lysis	phage lysis protein	lysis	A5LH82	Enterobacteria_phage	94.1	4.5e-30
VEE33131.1|2253046_2253358_+	Qin prophage protein	NA	K7PGU6	Enterobacteria_phage	64.6	2.0e-26
VEE33133.1|2253354_2253888_+	prophage lysozyme (endolysin)	NA	K7PLY1	Enterobacteria_phage	93.2	6.4e-97
VEE33135.1|2253884_2254382_+	Qin prophage protein	NA	A0A291LBG9	Klebsiella_phage	29.5	2.9e-06
VEE33137.1|2255630_2255804_+	GnsA/GnsB family transcriptional regulator	NA	NA	NA	NA	NA
VEE33139.1|2255955_2256366_-	Qin prophage	NA	C6ZCX4	Enterobacteria_phage	79.4	2.5e-56
VEE33141.1|2257045_2257591_+	DNA packaging protein	NA	A0A0K2FIG2	Enterobacteria_phage	98.2	9.5e-88
VEE33143.1|2257587_2257875_+|tail	Putative tail component of prophage	tail	A0A291AWT4	Escherichia_phage	98.9	1.4e-42
VEE33145.1|2257871_2258150_+|tail	Prophage tail fiber domain protein	tail	NA	NA	NA	NA
VEE33147.1|2258822_2259413_-	putative DNA-invertase	NA	A0A0A7NPV4	Enterobacteria_phage	39.3	1.5e-25
VEE33149.1|2259729_2259963_-	Qin prophage DNA-binding transcriptional regulator	NA	A0A192Y6D5	Salmonella_phage	88.3	1.1e-32
VEE33151.1|2260748_2262032_+	metabolite transport protein YdfJ	NA	NA	NA	NA	NA
VEE33153.1|2262120_2263581_+	putative sugar dehydrogenase	NA	H8ZJP8	Ostreococcus_tauri_virus	29.6	1.5e-42
>prophage 5
LR134296	Escherichia coli strain NCTC9041 genome assembly, chromosome: 1	4693367	2392600	2460688	4693367	transposase,tail,lysis	Enterobacteria_phage(35.71%)	54	NA	NA
VEE33366.1|2392600_2393749_-|transposase	transposase	transposase	A0A1W6JP07	Morganella_phage	97.1	1.2e-204
VEE33368.1|2394340_2395009_-	putative lipoprotein	NA	NA	NA	NA	NA
VEE33370.1|2395310_2395904_-	tellurite resistance protein	NA	NA	NA	NA	NA
VEE33372.1|2395900_2396893_-	potassium-tellurite ethidium and proflavin transporter	NA	NA	NA	NA	NA
VEE33374.1|2397016_2397997_+	putative transferase	NA	NA	NA	NA	NA
VEE33376.1|2397988_2398528_-	ribosomal-protein-serine acetyltransferase	NA	NA	NA	NA	NA
VEE33378.1|2398590_2398815_-	protein	NA	NA	NA	NA	NA
VEE33380.1|2398954_2400574_-	glucans biosynthesis protein D	NA	NA	NA	NA	NA
VEE33382.1|2400834_2402178_-	putative cytoplasmic protein	NA	NA	NA	NA	NA
VEE33384.1|2402394_2403318_+	transcriptional regulator	NA	NA	NA	NA	NA
VEE33386.1|2403355_2404996_-	methyl-accepting chemotaxis protein III (ribose an galactose chemoreceptor protein)	NA	NA	NA	NA	NA
VEE33388.1|2405615_2405789_-	Uncharacterised protein	NA	A0A0R6PKG1	Moraxella_phage	67.4	4.4e-07
VEE33390.1|2406033_2406564_-	cytochrome b561	NA	A0A0U2QLA7	Escherichia_phage	44.9	3.1e-19
VEE33392.1|2406752_2406869_+	glyceraldehyde-3-phosphate dehydrogenase C GapC	NA	NA	NA	NA	NA
VEE33394.1|2407127_2407505_+	glyceraldehyde-3-phosphate dehydrogenase C GapC	NA	NA	NA	NA	NA
VEE33396.1|2407501_2407753_+	glyceraldehyde-3-phosphate dehydrogenase C GapC	NA	NA	NA	NA	NA
VEE33398.1|2407794_2409234_-	aldehyde dehydrogenase A	NA	NA	NA	NA	NA
VEE33400.1|2409430_2410231_-	conserved SAM-binding protein, DUF218 family	NA	NA	NA	NA	NA
VEE33402.1|2410502_2414405_-	ATP-dependent helicase HrpA	NA	A0A1V0SIV3	Klosneuvirus	29.5	2.2e-53
VEE33404.1|2414605_2415211_+	FMN-dependent NADH-azoreductase	NA	NA	NA	NA	NA
VEE33406.1|2415264_2416581_-	Putative enzyme YnbD	NA	NA	NA	NA	NA
VEE33408.1|2416570_2418328_-	putative hydrolase	NA	NA	NA	NA	NA
VEE33410.1|2418343_2419240_-	membrane associated CTP-phosphosubstrate transferase	NA	NA	NA	NA	NA
VEE33412.1|2419239_2419845_-	phosphatidylglycerophosphate synthase	NA	NA	NA	NA	NA
VEE33414.1|2420015_2422322_-	protein involved in detoxification of methylglyoxal	NA	NA	NA	NA	NA
VEE33416.1|2422384_2423245_-	putative oxidoreductase	NA	NA	NA	NA	NA
VEE33418.1|2423452_2429515_-	autotransporter (AT) family porin	NA	NA	NA	NA	NA
VEE33420.1|2429845_2430436_-	phenylacetic acid degradation protein	NA	NA	NA	NA	NA
VEE33422.1|2430417_2431368_-	DNA-binding transcriptional repressor of phenylacetic acid degradation, aryl-CoA responsive	NA	NA	NA	NA	NA
VEE33424.1|2431468_2432782_-	phenylacetyl-CoA ligase	NA	NA	NA	NA	NA
VEE33426.1|2432808_2434014_-	beta-ketoadipyl CoA thiolase	NA	NA	NA	NA	NA
VEE33428.1|2434013_2434436_-	phenylacetate pathway hotdog-fold thioesterase	NA	NA	NA	NA	NA
VEE33430.1|2434425_2435808_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
VEE33432.1|2435854_2436643_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
VEE33434.1|2436642_2437410_-	enoyl-CoA hydratase-isomerase	NA	NA	NA	NA	NA
VEE33436.1|2437406_2438477_-	subunit of the phenylacetly-CoA oxygenase/reductase	NA	NA	NA	NA	NA
VEE33437.1|2438484_2438982_-	Phenylacetic acid degradation protein paaD	NA	NA	NA	NA	NA
VEE33439.1|2438996_2439743_-	multicomponent oxygenase/reductase subunit for phenylacetic acid degradation	NA	NA	NA	NA	NA
VEE33440.1|2439751_2440039_-	phenylacetate-CoA oxygenase subunit PaaB	NA	NA	NA	NA	NA
VEE33442.1|2440050_2440980_-	phenylacetate-CoA oxygenase subunit PaaA	NA	NA	NA	NA	NA
VEE33444.1|2441264_2443310_+	bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase	NA	NA	NA	NA	NA
VEE33446.1|2443557_2445831_+	tyramine oxidase	NA	NA	NA	NA	NA
VEE33448.1|2445888_2447388_-	phenylacetaldehyde dehydrogenase	NA	NA	NA	NA	NA
VEE33449.1|2448216_2451162_-|tail	tail:host specificity protein	tail	K7PKJ2	Enterobacteria_phage	97.0	0.0e+00
VEE33451.1|2451222_2451771_-	Tail assembly protein I from prophage	NA	K7PH50	Enterobacteria_phage	93.4	1.0e-89
VEE33453.1|2451767_2452367_-|tail	putative tail fiber component K of prophage	tail	A5LH41	Enterobacteria_phage	97.0	2.2e-117
VEE33455.1|2452516_2452975_-|tail	phage minor tail protein	tail	A0A1B5FP81	Escherichia_phage	98.0	6.6e-82
VEE33457.1|2453055_2456289_-|tail	putative phage tail length tape measure protein	tail	A0A2H4J9A1	uncultured_Caudovirales_phage	33.3	1.3e-104
VEE33459.1|2456647_2457166_-	ParB-like nuclease	NA	A0A2I7RQE2	Vibrio_phage	53.7	1.5e-34
VEE33461.1|2457303_2458728_-	Rac prophage; potassium transporter subunit	NA	NA	NA	NA	NA
VEE33463.1|2458898_2459363_-|lysis	lysis protein	lysis	A0A0K2FJD0	Enterobacteria_phage	92.8	1.5e-70
VEE33465.1|2459359_2459836_-	phage endolysin	NA	K7PKV2	Enterobacteria_phage	96.2	2.3e-85
VEE33467.1|2459839_2460181_-	Holin	NA	Q8SBE1	Shigella_phage	90.1	6.2e-53
VEE33469.1|2460436_2460688_-	phage protein	NA	A0A0U2RT94	Escherichia_phage	96.3	6.2e-42
>prophage 6
LR134296	Escherichia coli strain NCTC9041 genome assembly, chromosome: 1	4693367	2465949	2483293	4693367	tRNA,integrase	Escherichia_phage(63.16%)	23	2459174:2459187	2479439:2479452
2459174:2459187	attL	GCGCAGCAACATCA	NA	NA	NA	NA
VEE33481.1|2465949_2466327_-	putative prophage protein	NA	A0A0U2QQN3	Escherichia_phage	88.8	1.6e-54
VEE33483.1|2466342_2467104_-	transcription regulatory protein	NA	A0A0U2SAW4	Escherichia_phage	88.1	1.2e-117
VEE33485.1|2467126_2467873_-	putative phage DNA replication protein	NA	V5UQI5	Shigella_phage	78.9	3.8e-111
VEE33487.1|2467879_2468737_-	phage protein	NA	A0A0U2RT81	Escherichia_phage	84.5	8.3e-70
VEE33489.1|2468749_2469172_-	Protein of uncharacterised function (DUF1019)	NA	A0A0U2RXZ9	Escherichia_phage	95.0	1.5e-69
VEE33491.1|2469194_2469491_-	Rac prophage; putative DNA-binding transcriptional regulator	NA	A0A0R6PH31	Moraxella_phage	44.9	9.6e-10
VEE33493.1|2469614_2470091_+	Rac prophage; putative DNA-binding transcriptional regulator	NA	A0A2D1GNH0	Pseudomonas_phage	53.4	2.2e-11
VEE33495.1|2470399_2470534_+	Rac prophage protein	NA	NA	NA	NA	NA
VEE33497.1|2470544_2470700_+	Rac prophage; predicted protein	NA	M4QQ57	Salicola_phage	55.3	6.1e-08
VEE33499.1|2470696_2471308_-	prophage CP-933R superinfection exclusion protein	NA	NA	NA	NA	NA
VEE33501.1|2471626_2471848_+	FtsZ inhibitor protein	NA	A0A0U2RTC4	Escherichia_phage	97.3	4.9e-35
VEE33503.1|2471847_2472018_+	Rac prophage; zinc-binding protein	NA	A0A0U2SHB5	Escherichia_phage	71.4	3.6e-17
VEE33505.1|2472092_2472368_+	putative bacteriophage protein	NA	A0A0U2QW85	Escherichia_phage	96.7	1.4e-42
VEE33507.1|2472469_2475070_+	exonuclease VIII	NA	A0A0U2I1R6	Escherichia_phage	63.5	5.1e-248
VEE33508.1|2475062_2475872_+	recombination and repair protein RecT	NA	A0A1P8DTF2	Proteus_phage	71.5	8.8e-106
VEE33511.1|2476115_2476325_+	gydaC	NA	A0A0U2QL97	Escherichia_phage	98.4	6.1e-27
VEE33513.1|2476403_2476619_+	excisionase	NA	A0A0U2RY08	Escherichia_phage	100.0	1.8e-37
VEE33515.1|2476620_2477856_+|integrase	phage integrase	integrase	A0A0U2JGI6	Escherichia_phage	98.8	5.5e-240
VEE33517.1|2477907_2478843_+|tRNA	C32 tRNA thiolase	tRNA	A0A0U2S5Z2	Escherichia_phage	98.8	5.9e-146
VEE33519.1|2478971_2480345_-	ATP-independent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	33.1	6.6e-53
2479439:2479452	attR	GCGCAGCAACATCA	NA	NA	NA	NA
VEE33521.1|2480374_2480548_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE33523.1|2480822_2481806_-	zinc transport protein	NA	NA	NA	NA	NA
VEE33525.1|2482060_2483293_+	putative signaling protein	NA	A0A127AWB9	Bacillus_phage	39.5	3.1e-17
>prophage 7
LR134296	Escherichia coli strain NCTC9041 genome assembly, chromosome: 1	4693367	2882332	2960401	4693367	tail,tRNA,integrase,protease,plate	Escherichia_phage(39.39%)	66	2904409:2904426	2955090:2955107
VEE34289.1|2882332_2883733_+|tRNA	asparaginyl-tRNA synthetase	tRNA	A0A2K9V902	Bandra_megavirus	36.1	5.3e-82
VEE34291.1|2884334_2885423_+	outer membrane protein F	NA	Q1MVN1	Enterobacteria_phage	54.3	1.8e-98
VEE34293.1|2885607_2886798_+	aspartate aminotransferase	NA	NA	NA	NA	NA
VEE34295.1|2887019_2887667_-	metal-binding hydrolase	NA	NA	NA	NA	NA
VEE34297.1|2887693_2888242_-	exported protein YcbK	NA	A0A0K1LKR7	Rhodobacter_phage	33.7	7.0e-06
VEE34299.1|2888422_2890270_-	putative peptidoglycan binding domain-containing protein	NA	NA	NA	NA	NA
VEE34301.1|2890530_2894991_-	chromosome partition protein	NA	NA	NA	NA	NA
VEE34303.1|2894990_2895695_-	condesin subunit E	NA	NA	NA	NA	NA
VEE34305.1|2895675_2896998_-	chromosome partition protein	NA	NA	NA	NA	NA
VEE34307.1|2896994_2897780_-	metallothionein SmtA	NA	NA	NA	NA	NA
VEE34309.1|2897915_2898695_+	inner membrane protein	NA	NA	NA	NA	NA
VEE34311.1|2898671_2899565_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE34313.1|2899718_2900465_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
VEE34315.1|2900461_2900644_-	peroxide and acid resistance protein, UPF0434 family	NA	NA	NA	NA	NA
VEE34317.1|2900695_2901928_-	putative cytoplasmic protein	NA	NA	NA	NA	NA
VEE34319.1|2901964_2902951_-	tetraacyldisaccharide 4'-kinase (lipid A 4'-kinase)	NA	NA	NA	NA	NA
VEE34321.1|2902947_2904696_-	lipid A export permease MsbA	NA	W8CYL7	Bacillus_phage	29.8	2.5e-57
2904409:2904426	attL	CACCTTTCCTGATACCCA	NA	NA	NA	NA
VEE34323.1|2904732_2906997_-	putative competence-related protein	NA	NA	NA	NA	NA
VEE34325.1|2907204_2907489_-	integration host factor	NA	A7KV42	Bacillus_phage	40.2	3.2e-10
VEE34327.1|2907648_2909322_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
VEE34329.1|2909432_2910116_-	cytidylate kinase	NA	NA	NA	NA	NA
VEE34331.1|2910288_2911053_-	peptidase, M48B family	NA	NA	NA	NA	NA
VEE34333.1|2911221_2912505_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
VEE34335.1|2912575_2913664_-	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	46.8	3.5e-81
VEE34336.1|2913862_2914555_-	membrane protein YcaP	NA	NA	NA	NA	NA
VEE34338.1|2914684_2916445_+	putative fatty acid binding protein	NA	NA	NA	NA	NA
VEE34340.1|2916850_2917708_+	formate transporter	NA	NA	NA	NA	NA
VEE34342.1|2917762_2920045_+	formate acetyltransferase 1	NA	A0A2P0VNR5	Tetraselmis_virus	41.5	1.0e-162
VEE34344.1|2920363_2920582_-	transcriptional activator Ogr/delta	NA	A0A0F7LDQ9	Escherichia_phage	100.0	4.7e-38
VEE34346.1|2920663_2921827_-	phage protein D	NA	U5N3V4	Enterobacteria_phage	99.5	1.8e-205
VEE34348.1|2921826_2922306_-	gpU phage protein	NA	A0A0F7LDE8	Escherichia_phage	100.0	6.6e-85
VEE34350.1|2922320_2924768_-|tail	phage related tail protein	tail	M1T2S3	Escherichia_phage	99.0	0.0e+00
VEE34352.1|2924912_2925188_-|tail	tail protein E (GpE)	tail	A0A0F7LDQ8	Escherichia_phage	100.0	5.7e-41
VEE34354.1|2925244_2925763_-|tail	phage major tail tube protein FII	tail	A0A0F7LDZ1	Escherichia_phage	100.0	1.4e-93
VEE34356.1|2925775_2926051_-|tail	major tail sheath protein FI	tail	A0A0F7LBW9	Escherichia_phage	100.0	7.0e-47
VEE34358.1|2926139_2926427_-|tail	tail protein	tail	U5N0U8	Enterobacteria_phage	100.0	9.9e-52
VEE34360.1|2926419_2927328_-|plate	baseplate assembly protein	plate	A0A0F7LCJ3	Escherichia_phage	100.0	1.2e-162
VEE34362.1|2927332_2927680_-|plate	phage baseplate protein	plate	A0A0F7L9X3	Escherichia_phage	99.1	6.5e-58
VEE34364.1|2927676_2928306_-|plate	Baseplate assembly protein V (GpV)	plate	U5N3F0	Enterobacteria_phage	94.8	9.6e-108
VEE34366.1|2928422_2929466_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE34368.1|2929569_2930106_-|tail	tail protein	tail	A0A0F7LBV9	Escherichia_phage	94.4	1.2e-69
VEE34370.1|2930283_2930640_-	Cox protein	NA	A0A0F7LDH4	Escherichia_phage	100.0	1.1e-63
VEE34372.1|2930807_2931056_+	Phage protein C	NA	Q1JS25	Enterobacteria_phage	100.0	1.2e-42
VEE34374.1|2931149_2932145_+|integrase	integrase	integrase	A0A0F7LBR0	Escherichia_phage	99.4	7.9e-189
VEE34376.1|2932176_2932974_+	pyruvate formate lyase-activating enzyme 1	NA	A0A2P0VNQ0	Tetraselmis_virus	26.6	1.3e-21
VEE34378.1|2933055_2933646_-	NAD(P)H dehydrogenase (quinone)	NA	NA	NA	NA	NA
VEE34380.1|2933745_2934654_+	DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
VEE34382.1|2934654_2936085_-	putative amino acid permease	NA	NA	NA	NA	NA
VEE34384.1|2936294_2937443_-	major facilitator superfamily protein	NA	NA	NA	NA	NA
VEE34386.1|2937756_2938029_+	protein YcaC	NA	NA	NA	NA	NA
VEE34388.1|2938092_2938383_+	protein YcaC	NA	NA	NA	NA	NA
VEE34390.1|2938417_2939281_-	anaerobic dimethyl sulfoxide reductase subunit C	NA	NA	NA	NA	NA
VEE34392.1|2939282_2939900_-	anaerobic dimethyl sulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	60.6	5.0e-77
VEE34394.1|2939910_2942355_-	anaerobic dimethyl sulfoxide reductase chain A	NA	A0A077SK27	Escherichia_phage	49.8	6.6e-221
VEE34396.1|2942593_2943886_-|tRNA	seryl-tRNA synthetase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	48.2	1.5e-94
VEE34398.1|2943976_2945320_-	putative ATPase	NA	G3MBE0	Bacillus_virus	40.8	2.1e-80
VEE34400.1|2945330_2945942_-	outer-membrane lipoprotein carrier protein	NA	NA	NA	NA	NA
VEE34402.1|2946100_2950090_-	cell division protein FtsK	NA	A0A218M9A2	Mycobacterium_phage	48.7	1.2e-86
VEE34404.1|2950224_2950719_-	leucine-responsive transcriptional regulator	NA	NA	NA	NA	NA
VEE34406.1|2951263_2952229_+	thioredoxin reductase	NA	A0A2I2L5E1	Orpheovirus	44.6	8.5e-63
VEE34408.1|2952351_2954118_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	24.3	7.0e-23
VEE34410.1|2954118_2955840_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	25.4	9.9e-22
2955090:2955107	attR	CACCTTTCCTGATACCCA	NA	NA	NA	NA
VEE34412.1|2955881_2956586_+|tRNA	leucyl/phenylalanyl-tRNA-protein transferase	tRNA	NA	NA	NA	NA
VEE34414.1|2956870_2957089_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
VEE34416.1|2957773_2960050_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A223W0B1	Agrobacterium_phage	42.5	1.9e-166
VEE34418.1|2960080_2960401_-|protease	ATP-dependent Clp protease adaptor protein	protease	A0A1B1IT64	uncultured_Mediterranean_phage	44.4	1.6e-13
>prophage 8
LR134296	Escherichia coli strain NCTC9041 genome assembly, chromosome: 1	4693367	2992560	3001934	4693367	portal,tail,capsid	Salmonella_phage(75.0%)	10	NA	NA
VEE34482.1|2992560_2992818_+	glutaredoxin	NA	A0A2I7SAE2	Vibrio_phage	61.9	8.6e-23
VEE34484.1|2992847_2993225_-	inner membrane protein YbjM	NA	NA	NA	NA	NA
VEE34486.1|2993494_2995180_+	putative transport protein with two RCK domains	NA	NA	NA	NA	NA
VEE34488.1|2995415_2995634_-	prophage P2 OGR-like protein	NA	Q53ZE7	Salmonella_virus	69.0	7.5e-20
VEE34490.1|2995724_2996825_-	Late control protein D protein	NA	A0A1S6KZZ5	Salmonella_phage	88.0	1.7e-176
VEE34492.1|2996821_2997307_-|tail	bacteriophage tail protein GpU	tail	E5G6Q2	Salmonella_phage	80.6	6.3e-67
VEE34494.1|2997303_2998194_-|tail	TP901 family phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	78.0	1.4e-123
VEE34496.1|2998220_2999000_-|capsid	capsid scaffolding	capsid	A0A1S6KZW9	Salmonella_phage	90.7	2.5e-113
VEE34498.1|2999142_3000909_+	Terminase, ATPase subunit	NA	A0A1S6KZW3	Salmonella_phage	99.7	0.0e+00
VEE34500.1|3000908_3001934_+|capsid,portal	capsid portal protein	capsid,portal	A0A1S6KZW5	Salmonella_phage	88.9	4.0e-172
>prophage 9
LR134296	Escherichia coli strain NCTC9041 genome assembly, chromosome: 1	4693367	3006656	3014454	4693367	integrase	Salmonella_phage(83.33%)	13	3010486:3010498	3015318:3015330
VEE34508.1|3006656_3006890_-	Prophage protein	NA	E5G6M1	Salmonella_phage	98.7	2.3e-35
VEE34510.1|3006900_3007089_-	Uncharacterised protein	NA	E5G6M0	Salmonella_phage	98.4	5.5e-27
VEE34512.1|3007241_3009656_-	putative replication protein for prophage	NA	E5G6L9	Salmonella_phage	97.6	0.0e+00
VEE34514.1|3009652_3010510_-	site-specific DNA-methyltransferase	NA	E5G6L8	Salmonella_phage	96.1	7.3e-159
3010486:3010498	attL	CCGCCCATTTCAG	NA	NA	NA	NA
VEE34516.1|3010506_3010734_-	TraR/DksA family transcriptional regulator	NA	E5G6L7	Salmonella_phage	100.0	2.7e-36
VEE34518.1|3010733_3010967_-	Protein of uncharacterised function (DUF2732)	NA	E5G6L6	Salmonella_phage	97.4	1.9e-32
VEE34520.1|3011034_3011376_-	Uncharacterised protein	NA	E5G6L5	Salmonella_phage	97.3	5.1e-55
VEE34522.1|3011339_3011540_-	Protein of uncharacterised function (DUF2724)	NA	E5G6L4	Salmonella_phage	98.5	7.1e-33
VEE34524.1|3011547_3012057_-	phage regulatory protein CII	NA	E5G6L3	Salmonella_phage	98.2	1.3e-86
VEE34527.1|3012089_3012311_-	ybl30	NA	NA	NA	NA	NA
VEE34529.1|3012436_3013006_+	repressor protein	NA	A0A1S6KZZ7	Salmonella_phage	43.9	2.9e-39
VEE34531.1|3013021_3013213_+	Uncharacterised protein	NA	A0A0R6PIH8	Moraxella_phage	65.9	6.8e-09
VEE34533.1|3013401_3014454_+|integrase	integrase	integrase	A0A218M4I3	Erwinia_phage	57.3	3.6e-107
3015318:3015330	attR	CTGAAATGGGCGG	NA	NA	NA	NA
>prophage 10
LR134296	Escherichia coli strain NCTC9041 genome assembly, chromosome: 1	4693367	3095792	3115380	4693367	terminase,lysis,integrase	Enterobacteria_phage(72.73%)	28	3088897:3088911	3123866:3123880
3088897:3088911	attL	CAGGCCATCTTCCAG	NA	NA	NA	NA
VEE34684.1|3095792_3096146_+	IS2 ORF2	NA	Q9ZXG3	Shigella_phage	69.0	2.4e-39
VEE34686.1|3096187_3096931_-	putative AraC-type regulatory protein encoded in prophage CP-933H	NA	NA	NA	NA	NA
VEE34688.1|3099016_3100201_-	Phage protein	NA	K7PHC9	Enterobacteria_phage	71.4	2.3e-38
VEE34690.1|3100202_3101264_-|terminase	terminase GpA	terminase	A0A0K2FJ14	Enterobacteria_phage	98.9	1.7e-213
VEE34692.1|3101238_3101784_-	prophage qsr' DNA packaging protein NU1-like protein	NA	A0A0K2FIG2	Enterobacteria_phage	99.4	4.7e-95
VEE34694.1|3102531_3102738_-	DLP12 prophage; predicted protein	NA	A0A0K2FJ18	Enterobacteria_phage	100.0	5.8e-30
VEE34696.1|3103023_3103434_+	putative envelope protein	NA	C6ZCX4	Enterobacteria_phage	99.3	9.4e-72
VEE34698.1|3103724_3104018_+	lambdoid prophage DLP12 Bor-like protein	NA	K7PL54	Enterobacteria_phage	100.0	4.0e-48
VEE34700.1|3104049_3104511_-	Rz endopeptidase from lambdoid prophage DLP12	NA	A0A0K2FJD0	Enterobacteria_phage	98.7	4.6e-75
VEE34702.1|3104507_3105005_-	phage lysozome	NA	M1FJA0	Enterobacteria_phage	97.0	7.1e-90
VEE34704.1|3105004_3105220_-|lysis	phage lysis protein	lysis	A5LH82	Enterobacteria_phage	100.0	9.0e-34
VEE34706.1|3105807_3106890_+	outer membrane porin protein NmpC	NA	Q1MVN1	Enterobacteria_phage	76.3	8.9e-154
VEE34708.1|3107078_3107462_-	lambdoid prophage DLP12 antitermination protein Q	NA	A0A088CD47	Shigella_phage	83.3	4.4e-55
VEE34710.1|3107684_3108047_-	endodeoxyribonuclease RUS	NA	K7PM48	Enterobacteria_phage	96.5	7.3e-60
VEE34712.1|3108043_3108334_-	DLP12 prophage	NA	K7PGZ6	Enterobacteria_phage	93.8	4.3e-47
VEE34714.1|3108326_3108497_-	prophage protein NinE	NA	K7P7K0	Enterobacteria_phage	69.8	2.4e-13
VEE34716.1|3108496_3108952_-	DLP12 prophage; DNA base-flipping protein	NA	I6PD71	Cronobacter_phage	67.5	1.4e-60
VEE34718.1|3109142_3109595_-	17 kDa surface antigen	NA	NA	NA	NA	NA
VEE34720.1|3109591_3110152_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE34721.1|3110408_3110600_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE34723.1|3110786_3111206_+	Bet protein	NA	A0A1I9LJN0	Stx_converting_phage	100.0	3.9e-73
VEE34725.1|3111352_3111574_+	putative C4-type zinc finger protein	NA	A0A0N7C211	Escherichia_phage	98.6	6.4e-35
VEE34727.1|3111570_3111822_+	putative bacteriophage protein	NA	A0A0K2FJF6	Enterobacteria_phage	92.3	1.3e-31
VEE34729.1|3112120_3112735_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE34731.1|3113028_3113148_+	phage protein	NA	A0A0F6TJR3	Escherichia_coli_O157_typing_phage	79.5	8.0e-08
VEE34733.1|3113395_3113824_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE34735.1|3113906_3114074_+	Uncharacterised protein	NA	A0A0K2FJ46	Enterobacteria_phage	98.2	1.3e-27
VEE34737.1|3114309_3115380_+|integrase	putative integrase	integrase	K7P6P6	Enterobacteria_phage	99.4	3.3e-201
3123866:3123880	attR	CAGGCCATCTTCCAG	NA	NA	NA	NA
>prophage 11
LR134296	Escherichia coli strain NCTC9041 genome assembly, chromosome: 1	4693367	3605830	3630586	4693367	tail,holin,integrase	Shigella_phage(50.0%)	34	3624995:3625009	3628675:3628689
VEE35522.1|3605830_3606604_+	Uncharacterised protein	NA	G9IA57	Pseudomonas_phage	38.5	2.4e-36
VEE35523.1|3606661_3607216_-	DNA invertase from prophage CP-933H	NA	A0A1S6L009	Salmonella_phage	89.0	5.7e-88
VEE35524.1|3607658_3608075_+	CPS-53 (KpLE1) prophage protein	NA	A0A0M4S6V4	Salmonella_phage	53.9	4.1e-14
VEE35525.1|3608046_3608490_-|tail	tail fiber assembly protein	tail	A0A0F7LDZ0	Escherichia_phage	95.2	1.3e-79
VEE35526.1|3608510_3609173_-|tail	tail fiber protein	tail	U5P0I1	Shigella_phage	64.9	3.6e-65
VEE35527.1|3609501_3610056_-	Uncharacterised protein	NA	A0A192Y5Y1	Salmonella_phage	100.0	4.5e-101
VEE35528.1|3610296_3610689_-	putative phage lytic protein	NA	U5P0U9	Shigella_phage	83.8	2.3e-51
VEE35529.1|3610672_3611149_-	phage lysozyme	NA	S5FV07	Shigella_phage	96.8	4.1e-87
VEE35530.1|3611152_3611488_-|holin	putative transmembrane phage holin	holin	Q8SBE1	Shigella_phage	99.1	2.0e-59
VEE35531.1|3611565_3612618_-	DNA methylase	NA	A5LH81	Enterobacteria_phage	98.0	3.7e-205
VEE35532.1|3612767_3612962_-	lipoprotein	NA	Q8SBE3	Shigella_phage	100.0	1.8e-28
VEE35533.1|3613374_3614826_+	Predicted ATPase	NA	NA	NA	NA	NA
VEE35534.1|3614998_3615370_-	putative antitermination protein Q-like protein; DLP12 prophage	NA	Q777W5	Enterobacteria_phage	82.5	6.1e-54
VEE35535.1|3615387_3616377_-	putative prophage protein	NA	A0A291AWV9	Escherichia_phage	99.4	1.2e-194
VEE35536.1|3616384_3617182_-	putative KilA-N phage protein	NA	A0A0P0ZCS0	Stx2-converting_phage	99.6	1.2e-150
VEE35537.1|3617201_3617591_-	putative Crossover junction endodeoxyribonuclease	NA	A0A291AX14	Escherichia_phage	98.4	1.0e-67
VEE35538.1|3617587_3617914_-	putative LexA repressor	NA	A0A0N7KZF7	Stx2-converting_phage	99.1	2.7e-53
VEE35539.1|3617913_3618402_-	CPS-53 (KpLE1) prophage protein	NA	K7PJR0	Enterobacteria_phage	97.5	8.0e-86
VEE35540.1|3618404_3619346_-	phage O protein family	NA	U5P0A0	Shigella_phage	98.4	6.2e-151
VEE35541.1|3619355_3619694_-	Uncharacterised protein	NA	U5P0J9	Shigella_phage	98.2	7.8e-56
VEE35542.1|3619690_3620242_-	nucleic acid-binding protein; e14 prophage	NA	S5FXP0	Shigella_phage	99.5	3.4e-101
VEE35543.1|3620234_3620495_-	putative lambda repressor-like DNA-binding domains	NA	S5FKP1	Shigella_phage	100.0	7.1e-41
VEE35544.1|3620637_3621285_+	regulatory protein	NA	S5FUZ3	Shigella_phage	100.0	2.8e-118
VEE35545.1|3621624_3621831_+	putative prophage protein	NA	NA	NA	NA	NA
VEE35546.1|3621802_3622237_-	Uncharacterised protein	NA	U5P096	Shigella_phage	100.0	8.4e-79
VEE35547.1|3622705_3623068_+	CPS-53 (KpLE1) prophage protein	NA	U5P4J6	Shigella_phage	99.2	5.6e-60
VEE35548.1|3623133_3623958_+	CPS-53 (KpLE1) prophage protein	NA	U5P439	Shigella_phage	100.0	6.0e-150
VEE35549.1|3624085_3624622_+	CPS-53 (KpLE1) prophage protein	NA	K7PKJ9	Enterobacteria_phage	98.9	3.7e-100
VEE35550.1|3624612_3624975_+	CPS-53 (KpLE1) prophage protein	NA	U5P092	Shigella_phage	97.5	1.5e-65
VEE35551.1|3624974_3625280_+	CPS-53 (KpLE1) prophage protein	NA	U5P0J0	Shigella_phage	100.0	6.8e-51
3624995:3625009	attL	AGAACTGATTAAAGA	NA	NA	NA	NA
VEE35552.1|3625506_3626670_+|integrase	prophage integrase	integrase	U5P434	Shigella_phage	100.0	2.4e-229
VEE35553.1|3626874_3628128_-	gamma-glutamyl phosphate reductase	NA	A0A1X9I5D4	Streptococcus_phage	47.2	9.8e-96
VEE35554.1|3628139_3629243_-	gamma-glutamyl kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.1e-61
3628675:3628689	attR	TCTTTAATCAGTTCT	NA	NA	NA	NA
VEE35555.1|3629530_3630586_+	outer membrane phosphoporin protein E	NA	Q1MVN1	Enterobacteria_phage	61.1	9.1e-119
>prophage 12
LR134296	Escherichia coli strain NCTC9041 genome assembly, chromosome: 1	4693367	4041908	4074476	4693367	transposase,integrase	Enterobacteria_phage(33.33%)	35	4070377:4070392	4080062:4080077
VEE35994.1|4041908_4042289_+|transposase	transposase	transposase	A0A0P0ZBP6	Stx2-converting_phage	99.2	7.1e-66
VEE35995.1|4042285_4042633_+	prophage CP-933O IS protein	NA	A0A0P0ZBY2	Stx2-converting_phage	100.0	2.2e-61
VEE35996.1|4042682_4044068_+|transposase	transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	89.5	6.9e-260
VEE35997.1|4044306_4045665_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VEE35998.1|4046397_4046655_-	Biofilm development protein YmgB/AriR	NA	NA	NA	NA	NA
VEE35999.1|4046778_4046889_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE36000.1|4047416_4047626_-|transposase	IS1 transposase	transposase	U5P0U6	Shigella_phage	98.6	2.2e-32
VEE36001.1|4047626_4047920_-	IS1 protein InsB	NA	U5P0U6	Shigella_phage	89.0	4.2e-42
VEE36002.1|4048405_4048927_+	RNA polymerase sigma factor	NA	NA	NA	NA	NA
VEE36003.1|4048923_4049877_+	iron(III) dicitrate sensor protein	NA	NA	NA	NA	NA
VEE36004.1|4049963_4052288_+	iron(III) dicitrate TonB-dependent receptor	NA	NA	NA	NA	NA
VEE36005.1|4052332_4053235_+	iron-dicitrate transporter substrate-binding subunit	NA	NA	NA	NA	NA
VEE36006.1|4053231_4054230_+	iron(III) dicitrate transport system, permease protein	NA	NA	NA	NA	NA
VEE36007.1|4054226_4055183_+	iron-dicitrate transporter subunit FecD	NA	A0A2H4IY97	uncultured_Caudovirales_phage	26.1	1.1e-17
VEE36008.1|4055183_4055951_+	iron(III) dicitrate transport system, ATP-binding protein	NA	G3M9Y6	Bacillus_virus	24.8	6.4e-13
VEE36009.1|4056508_4056766_-	KpLE2 phage-like element	NA	NA	NA	NA	NA
VEE36010.1|4056848_4057502_-|transposase	putative transposase subunit	transposase	Q716C2	Shigella_phage	97.2	9.6e-127
VEE36011.1|4057763_4058915_-|transposase	IS30 transposase encoded within prophage CP-933T	transposase	W5R8L2	Staphylococcus_phage	35.6	2.0e-42
VEE36012.1|4059207_4059885_+|transposase	IS911 transposase orfB	transposase	Q716C2	Shigella_phage	61.0	1.2e-79
VEE36013.1|4059877_4060450_-|transposase	IS66 family transposase orfB	transposase	A0A0P0ZEB3	Stx2-converting_phage	65.9	4.5e-64
VEE36014.1|4060708_4061974_-|integrase	phage integrase family site specific recombinase	integrase	Q7M297	Enterobacteria_phage	38.0	2.2e-79
VEE36015.1|4062920_4063832_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE36016.1|4063813_4064680_-	phage regulatory protein	NA	NA	NA	NA	NA
VEE36017.1|4064940_4067274_-	putative P4-specific DNA primase	NA	Q7M2A8	Enterobacteria_phage	85.2	0.0e+00
VEE36018.1|4067288_4067609_-	P4 phage protein	NA	NA	NA	NA	NA
VEE36019.1|4067605_4067833_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE36020.1|4067829_4068024_-	putative phage regulatory protein	NA	Q7M2A7	Enterobacteria_phage	87.1	1.4e-22
VEE36021.1|4068375_4068642_-	putative phage regulatory protein	NA	Q7M299	Enterobacteria_phage	70.5	7.5e-30
VEE36022.1|4069181_4069925_+	glycoprotein 3	NA	NA	NA	NA	NA
VEE36023.1|4069928_4070147_+	putative prophage regulatory protein	NA	Q7M294	Enterobacteria_phage	66.7	5.1e-16
VEE36024.1|4070175_4070739_+	prophage polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	64.7	5.1e-60
4070377:4070392	attL	CGTTATATCCGCTCGC	NA	NA	NA	NA
VEE36025.1|4070744_4070888_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE36026.1|4071357_4072014_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE36027.1|4072013_4073090_+	sensor protein KdpD	NA	NA	NA	NA	NA
VEE36028.1|4073213_4074476_-|integrase	site-specific recombinase, phage integrase family	integrase	B7SYF8	Stenotrophomonas_phage	40.7	4.1e-73
4080062:4080077	attR	CGTTATATCCGCTCGC	NA	NA	NA	NA
