The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
LR134295	Escherichia coli strain NCTC9080 genome assembly, chromosome: 1	4722738	1029730	1042913	4722738	tRNA	Escherichia_phage(40.0%)	12	NA	NA
VEE27246.1|1029730_1030492_+	stationary phase survival protein SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	48.0	3.4e-59
VEE27248.1|1030485_1031112_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	49.7	5.7e-36
VEE27250.1|1031251_1032391_+	lipoprotein NlpD	NA	D7RWE0	Brochothrix_phage	35.6	1.7e-06
VEE27252.1|1032453_1033446_+	RNA polymerase sigma factor RpoS	NA	G8CLC7	Synechococcus_phage	37.3	6.7e-31
VEE27254.1|1033539_1034904_-	inner membrane permease YgbN	NA	NA	NA	NA	NA
VEE27256.1|1034992_1035769_-	hydroxypyruvate isomerase	NA	NA	NA	NA	NA
VEE27258.1|1035773_1036412_-	aldolase	NA	A0A077SK32	Escherichia_phage	75.0	1.4e-82
VEE27260.1|1036408_1037671_-|tRNA	paral putative tRNA synthase	tRNA	A0A077SLJ7	Escherichia_phage	61.2	6.3e-135
VEE27262.1|1037667_1038576_-	oxidoreductase YgbJ	NA	A0A077SLF7	Escherichia_phage	76.9	3.0e-118
VEE27264.1|1038771_1039539_+	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	56.7	2.5e-70
VEE27266.1|1039589_1040246_-	serine/threonine-specific protein phosphatase 2	NA	K7P7V3	Enterobacteria_phage	45.3	5.6e-50
VEE27268.1|1040351_1042913_-	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	20.6	3.9e-30
>prophage 2
LR134295	Escherichia coli strain NCTC9080 genome assembly, chromosome: 1	4722738	1648262	1657704	4722738		Enterobacteria_phage(85.71%)	10	NA	NA
VEE28746.1|1648262_1649189_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.8	1.7e-23
VEE28749.1|1649193_1649925_+	ABC transporter permease	NA	NA	NA	NA	NA
VEE28752.1|1649905_1650013_-	putative inner membrane protein	NA	NA	NA	NA	NA
VEE28755.1|1650072_1650804_-	MerR family transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	99.5	9.7e-112
VEE28758.1|1651025_1652711_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	99.6	2.5e-304
VEE28761.1|1652707_1653427_+	two-component response-regulatory protein YehT	NA	NA	NA	NA	NA
VEE28764.1|1653473_1653944_+	conserved protein, DUF1456 family	NA	Q9EYF4	Enterobacteria_phage	100.0	1.8e-82
VEE28768.1|1653984_1654446_-	lipoprotein yehR	NA	Q9EYF5	Enterobacteria_phage	98.7	1.6e-75
VEE28771.1|1654570_1656571_-	zinc finger SWIM domain-containing protein	NA	Q9EYF6	Enterobacteria_phage	96.6	0.0e+00
VEE28774.1|1656567_1657704_-	von Willebrand factor type A domain protein YehP	NA	Q9EYF7	Enterobacteria_phage	97.7	1.9e-162
>prophage 3
LR134295	Escherichia coli strain NCTC9080 genome assembly, chromosome: 1	4722738	1669336	1704049	4722738	integrase,protease,transposase,tRNA	Shigella_phage(22.22%)	40	1673829:1673888	1698313:1699080
VEE28792.1|1669336_1671370_-|tRNA	methionyl-tRNA synthetase	tRNA	A0A1V0SDF2	Indivirus	27.6	2.3e-54
VEE28795.1|1671501_1672611_+	ATPase	NA	NA	NA	NA	NA
VEE28798.1|1672873_1673155_+	fimbrial-like adhesin protein	NA	NA	NA	NA	NA
VEE28801.1|1673447_1673855_+	fimbrial protein	NA	NA	NA	NA	NA
1673829:1673888	attL	GGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGC	NA	NA	NA	NA
VEE28804.1|1673883_1674159_+|transposase	IS1 transposase	transposase	NA	NA	NA	NA
VEE28807.1|1674203_1674581_+|transposase	IS1 transposase	transposase	U5P0U6	Shigella_phage	100.0	1.3e-67
VEE28810.1|1674688_1674979_+	fimbrial-like adhesin protein StcD	NA	NA	NA	NA	NA
VEE28813.1|1675060_1675399_-	periplasmic modulator of Ni and Co efflux	NA	NA	NA	NA	NA
VEE28816.1|1675617_1676442_-	nickel/cobalt efflux protein RcnA	NA	NA	NA	NA	NA
VEE28819.1|1676562_1676835_+	transcriptional repressor RcnR	NA	NA	NA	NA	NA
VEE28822.1|1677088_1678393_+|integrase	integrase	integrase	NA	NA	NA	NA
VEE28825.1|1678791_1679742_+	Uncharacterised protein	NA	A0A1B1ITH5	uncultured_Mediterranean_phage	29.9	2.7e-29
VEE28828.1|1680072_1680420_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE28831.1|1680756_1680846_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE28834.1|1681159_1681711_-	resolvase domain-containing protein	NA	Q2A092	Sodalis_phage	43.3	4.6e-29
VEE28837.1|1683475_1683658_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE28840.1|1683804_1684524_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE28843.1|1684507_1684780_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE28846.1|1685530_1686319_+	hydroxyethylthiazole kinase	NA	NA	NA	NA	NA
VEE28849.1|1686315_1687116_+	phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
VEE28852.1|1687180_1687999_+	1,4-beta-N-acetylmuramidase	NA	D0R7H8	Paenibacillus_phage	38.5	2.9e-24
VEE28855.1|1688050_1688797_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
VEE28858.1|1688770_1689736_-	putative carbohydrate/pyrimidine kinase	NA	NA	NA	NA	NA
VEE28861.1|1689732_1690737_-	putative ADP-ribosylglycohydrolase	NA	A0A1S6UB21	Serratia_phage	29.4	7.5e-14
VEE28864.1|1690733_1692011_-	major facilitator superfamily protein	NA	NA	NA	NA	NA
VEE28867.1|1692267_1693320_+	fructose-bisphosphate aldolase	NA	NA	NA	NA	NA
VEE28870.1|1693628_1694114_+	tagatose-bisphosphate aldolase	NA	NA	NA	NA	NA
VEE28874.1|1694171_1694483_+	tagatose-bisphosphate aldolase	NA	NA	NA	NA	NA
VEE28877.1|1694511_1695774_+	putative tagatose 6-phosphate kinase	NA	NA	NA	NA	NA
VEE28880.1|1695783_1696236_+	galactitol-specific PTS system EIIA component	NA	NA	NA	NA	NA
VEE28883.1|1696266_1696551_+	galactitol-specific PTS system EIIB component	NA	NA	NA	NA	NA
VEE28886.1|1696554_1697910_+	galactitol-specific PTS system EIIC component	NA	NA	NA	NA	NA
VEE28889.1|1697957_1698317_+	galactitol-1-phosphate 5-dehydrogenase	NA	NA	NA	NA	NA
VEE28892.1|1698367_1698643_+|transposase	IS1 transposase	transposase	NA	NA	NA	NA
VEE28895.1|1698687_1699065_+|transposase	IS1 transposase	transposase	U5P0U6	Shigella_phage	100.0	1.3e-67
VEE28898.1|1699136_1699775_+	galactitol-1-phosphate 5-dehydrogenase	NA	NA	NA	NA	NA
1698313:1699080	attR	GGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTGGATGCCGGGCAACTGCCCGCATTATGGGCGTTGGCCTCAACACGATTTTACGTCACTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGTGGGGCTATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCGACGCTGGGGCGTCTTATGAGCCTGCTGTCACCCTTTGACGTGGTGATATGGATGACGGATGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC	NA	NA	NA	NA
VEE28901.1|1699874_1700654_+	galactitol utilization operon repressor	NA	NA	NA	NA	NA
VEE28904.1|1700735_1701635_-	lipid kinase	NA	A0A1V0SBJ0	Catovirus	29.0	1.3e-12
VEE28907.1|1702039_1702357_+	protein	NA	NA	NA	NA	NA
VEE28910.1|1702687_1704049_-|protease	putative protease	protease	Q6DW11	Phage_TP	99.7	1.9e-217
>prophage 4
LR134295	Escherichia coli strain NCTC9080 genome assembly, chromosome: 1	4722738	1753700	1763244	4722738		Bacillus_phage(28.57%)	8	NA	NA
VEE29023.1|1753700_1755095_+	colanic acid biosynthesis protein	NA	A0A291LBB9	Klebsiella_phage	31.9	8.3e-19
VEE29026.1|1755269_1756163_+	UTP--glucose-1-phosphate uridylyltransferase subunit GalF	NA	A0A127AW70	Bacillus_phage	42.0	1.0e-46
VEE29029.1|1756491_1757505_+	UDP-galactose-4-epimerase	NA	A0A2K9L5H6	Tupanvirus	50.0	2.8e-85
VEE29032.1|1757835_1758954_+	GDP-mannose 4,6-dehydratase	NA	M4QRT5	Synechococcus_phage	65.8	1.4e-133
VEE29035.1|1758957_1759923_+	GDP-L-fucose synthetase	NA	D1LW79	Prochlorococcus_phage	50.8	6.4e-87
VEE29038.1|1759922_1760426_+	GDP-mannose mannosyl hydrolase	NA	NA	NA	NA	NA
VEE29041.1|1760418_1761867_+	GDP-mannose pyrophosphorylase	NA	A0A1V0SH58	Hokovirus	31.4	4.8e-54
VEE29044.1|1761870_1763244_+	phosphomannomutase CpsG	NA	A0A127AWJ1	Bacillus_phage	27.9	2.2e-32
>prophage 5
LR134295	Escherichia coli strain NCTC9080 genome assembly, chromosome: 1	4722738	1838135	1861800	4722738	integrase,transposase	Pseudomonas_phage(40.0%)	19	1841969:1842028	1861963:1862042
VEE29253.1|1838135_1838774_-|integrase	phage integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	42.3	1.1e-29
VEE29256.1|1838867_1839398_-|integrase	bacteriophage integrase	integrase	B7SYF8	Stenotrophomonas_phage	42.7	1.4e-30
VEE29259.1|1839961_1840879_+	Nitrogen assimilation regulatory protein nac	NA	NA	NA	NA	NA
VEE29262.1|1840980_1841931_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
1841969:1842028	attL	TGGCTCCTCTGACTGGACTCGAACCAGTGACATACGGATTAACAGTCCGCCGTTCTACCG	NA	NA	NA	NA
VEE29265.1|1842237_1843692_+	multidrug efflux system	NA	NA	NA	NA	NA
VEE29268.1|1844320_1845037_-	putative cytoplasmic protein	NA	NA	NA	NA	NA
VEE29271.1|1845379_1846834_-	AMP nucleosidase	NA	NA	NA	NA	NA
VEE29274.1|1846935_1848252_-	shikimate transporter	NA	NA	NA	NA	NA
VEE29277.1|1848566_1849619_+	ADP-heptose--LPS heptosyltransferase-like protein	NA	NA	NA	NA	NA
VEE29280.1|1849880_1851287_-	putative adhesin	NA	NA	NA	NA	NA
VEE29283.1|1851383_1856468_-	adhesin	NA	NA	NA	NA	NA
VEE29286.1|1856533_1856983_-	adhesin	NA	NA	NA	NA	NA
VEE29289.1|1856996_1857146_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE29292.1|1857600_1857993_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE29295.1|1857980_1858421_-	YD repeat-containing protein	NA	NA	NA	NA	NA
VEE29298.1|1858593_1858971_-|transposase	IS1 transposase	transposase	U5P0U6	Shigella_phage	100.0	1.3e-67
VEE29301.1|1859015_1859291_-|transposase	IS1 transposase	transposase	NA	NA	NA	NA
VEE29304.1|1860537_1861176_-|integrase	phage integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	42.3	1.1e-29
VEE29307.1|1861269_1861800_-|integrase	bacteriophage integrase	integrase	B7SYF8	Stenotrophomonas_phage	42.7	6.8e-30
1861963:1862042	attR	TGGCTCCTCTGACTGGACTCGAACCAGTGACATACGGATTAACAGTCCGCCGTTCTACCGACTGAACTACAGAGGAATCG	NA	NA	NA	NA
>prophage 6
LR134295	Escherichia coli strain NCTC9080 genome assembly, chromosome: 1	4722738	2420326	2543196	4722738	integrase,lysis,coat,transposase,terminase,tRNA,tail	Escherichia_phage(37.5%)	117	2502533:2502548	2548794:2548809
VEE30884.1|2420326_2421475_-|transposase	transposase	transposase	A0A1W6JP07	Morganella_phage	97.1	1.2e-204
VEE30887.1|2422066_2422735_-	putative lipoprotein	NA	NA	NA	NA	NA
VEE30890.1|2423037_2423631_-	tellurite resistance protein	NA	NA	NA	NA	NA
VEE30893.1|2423627_2424620_-	potassium-tellurite ethidium and proflavin transporter	NA	NA	NA	NA	NA
VEE30896.1|2424743_2425724_+	putative transferase	NA	NA	NA	NA	NA
VEE30899.1|2425715_2426255_-	ribosomal-protein-serine acetyltransferase	NA	NA	NA	NA	NA
VEE30902.1|2426317_2426542_-	protein	NA	NA	NA	NA	NA
VEE30905.1|2426681_2428301_-	glucans biosynthesis protein D	NA	NA	NA	NA	NA
VEE30908.1|2428561_2429905_-	putative cytoplasmic protein	NA	NA	NA	NA	NA
VEE30911.1|2430121_2431045_+	transcriptional regulator	NA	NA	NA	NA	NA
VEE30913.1|2431082_2432723_-	methyl-accepting chemotaxis protein III (ribose an galactose chemoreceptor protein)	NA	NA	NA	NA	NA
VEE30916.1|2434102_2434468_+	IS150 conserved protein InsB	NA	A0A2I6AZV9	Macacine_betaherpesvirus	100.0	9.0e-66
VEE30919.1|2434509_2434677_+	regulatory peptide	NA	NA	NA	NA	NA
VEE30922.1|2434788_2434962_-	Uncharacterised protein	NA	A0A0R6PKG1	Moraxella_phage	67.4	4.4e-07
VEE30925.1|2435206_2435737_-	cytochrome b561	NA	A0A0U2QLA7	Escherichia_phage	44.9	3.1e-19
VEE30928.1|2435925_2436042_+	glyceraldehyde-3-phosphate dehydrogenase C GapC	NA	NA	NA	NA	NA
VEE30931.1|2436300_2436927_+	glyceraldehyde-3-phosphate dehydrogenase C GapC	NA	NA	NA	NA	NA
VEE30934.1|2436968_2438408_-	aldehyde dehydrogenase A	NA	NA	NA	NA	NA
VEE30937.1|2438604_2439405_-	conserved SAM-binding protein, DUF218 family	NA	NA	NA	NA	NA
VEE30940.1|2439676_2443579_-	ATP-dependent helicase HrpA	NA	A0A1V0SIV3	Klosneuvirus	29.5	2.2e-53
VEE30943.1|2443779_2444385_+	FMN-dependent NADH-azoreductase	NA	NA	NA	NA	NA
VEE30945.1|2444435_2445752_-	Putative enzyme YnbD	NA	NA	NA	NA	NA
VEE30948.1|2445741_2447406_-	putative hydrolase	NA	NA	NA	NA	NA
VEE30951.1|2447576_2449883_-	protein involved in detoxification of methylglyoxal	NA	NA	NA	NA	NA
VEE30954.1|2449946_2450807_-	putative oxidoreductase	NA	NA	NA	NA	NA
VEE30957.1|2451038_2451629_-	phenylacetic acid degradation protein	NA	NA	NA	NA	NA
VEE30960.1|2451610_2452561_-	DNA-binding transcriptional repressor of phenylacetic acid degradation, aryl-CoA responsive	NA	NA	NA	NA	NA
VEE30963.1|2452661_2453975_-	phenylacetyl-CoA ligase	NA	NA	NA	NA	NA
VEE30966.1|2454001_2455207_-	beta-ketoadipyl CoA thiolase	NA	NA	NA	NA	NA
VEE30969.1|2455206_2455629_-	phenylacetate pathway hotdog-fold thioesterase	NA	NA	NA	NA	NA
VEE30972.1|2455618_2457001_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
VEE30975.1|2457047_2457836_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
VEE30978.1|2457835_2458603_-	enoyl-CoA hydratase-isomerase	NA	NA	NA	NA	NA
VEE30981.1|2458599_2459670_-	subunit of the phenylacetly-CoA oxygenase/reductase	NA	NA	NA	NA	NA
VEE30984.1|2459677_2460175_-	Phenylacetic acid degradation protein paaD	NA	NA	NA	NA	NA
VEE30987.1|2460189_2460936_-	multicomponent oxygenase/reductase subunit for phenylacetic acid degradation	NA	NA	NA	NA	NA
VEE30990.1|2460944_2461232_-	phenylacetate-CoA oxygenase subunit PaaB	NA	NA	NA	NA	NA
VEE30993.1|2461243_2462173_-	phenylacetate-CoA oxygenase subunit PaaA	NA	NA	NA	NA	NA
VEE30996.1|2462457_2464503_+	bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase	NA	NA	NA	NA	NA
VEE30999.1|2464750_2467024_+	tyramine oxidase	NA	NA	NA	NA	NA
VEE31002.1|2467081_2468581_-	phenylacetaldehyde dehydrogenase	NA	NA	NA	NA	NA
VEE31005.1|2468816_2469722_+	DNA-binding transcriptional activator FeaR	NA	NA	NA	NA	NA
VEE31008.1|2469893_2470220_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VEE31011.1|2470227_2470413_-	lipoprotein	NA	NA	NA	NA	NA
VEE31014.1|2470409_2473049_-	protein	NA	NA	NA	NA	NA
VEE31017.1|2473256_2474246_+	D-lactate dehydrogenase	NA	M1I4S0	Paramecium_bursaria_Chlorella_virus	44.0	1.5e-70
VEE31020.1|2474356_2474779_+	heat-inducible protein	NA	NA	NA	NA	NA
VEE31023.1|2474775_2475042_-	protein	NA	NA	NA	NA	NA
VEE31026.1|2475315_2478840_+	pyruvate-flavodoxin oxidoreductase	NA	NA	NA	NA	NA
VEE31029.1|2479206_2480340_+	outer membrane protein N (porin)	NA	Q1MVN1	Enterobacteria_phage	58.8	8.3e-118
VEE31032.1|2480480_2480915_+	putative universal stress protein	NA	A0A1W6JNV4	Morganella_phage	52.8	1.8e-28
VEE31035.1|2481875_2482109_+	Qin prophage DNA-binding transcriptional regulator	NA	A0A192Y6D5	Salmonella_phage	88.3	1.1e-32
VEE31038.1|2482425_2483016_+	putative DNA-invertase	NA	A0A0A7NPV4	Enterobacteria_phage	38.8	1.6e-24
VEE31042.1|2483688_2486916_-|tail	tail fiber protein	tail	X2KTY7	Enterobacteria_phage	58.8	6.4e-06
VEE31045.1|2486980_2487580_-	outer membrane precursor Lom	NA	A5LH44	Enterobacteria_phage	95.0	3.5e-107
VEE31048.1|2487647_2491127_-	Host specificity protein J of prophage	NA	A5LH43	Enterobacteria_phage	89.5	0.0e+00
VEE31051.1|2491187_2491730_-|tail	putative phage tail component	tail	A0A291AWV5	Escherichia_phage	81.9	5.4e-75
VEE31054.1|2491726_2492326_-|tail	tail component	tail	A5LH41	Enterobacteria_phage	97.5	5.7e-118
VEE31057.1|2492475_2493174_-|tail	phage minor tail protein	tail	A0A0K2FJ01	Enterobacteria_phage	93.5	1.1e-125
VEE31060.1|2493173_2493470_-|tail	putative phage minor tail protein	tail	H6WZM2	Escherichia_phage	52.0	1.8e-24
VEE31063.1|2493504_2496738_-|tail	putative phage tail length tape measure protein	tail	A0A2H4J9A1	uncultured_Caudovirales_phage	34.5	1.1e-111
VEE31066.1|2497211_2497661_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE31069.1|2497721_2498684_-	Uncharacterised protein	NA	A0A059VG08	Pseudomonas_phage	39.2	4.5e-56
VEE31072.1|2498710_2499103_-	phage protein	NA	NA	NA	NA	NA
VEE31075.1|2499099_2499480_-	Uncharacterised protein	NA	A0A059VF88	Pseudomonas_phage	44.4	1.1e-18
VEE31078.1|2499480_2499864_-	Uncharacterised protein	NA	A0A0P0I456	Acinetobacter_phage	39.4	2.2e-14
VEE31080.1|2500138_2500258_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE31083.1|2500261_2500438_-	Uncharacterised protein	NA	G8C7P8	Escherichia_phage	62.3	4.7e-12
VEE31086.1|2500480_2501620_-|coat	P22 coat protein - gene protein 5	coat	G8C7P7	Escherichia_phage	74.7	3.7e-158
VEE31089.1|2501718_2502483_-	Uncharacterised protein	NA	G8C7P6	Escherichia_phage	64.2	6.9e-84
2502533:2502548	attL	ATCGCAGCAATAAAAA	NA	NA	NA	NA
VEE31092.1|2502587_2503703_-	phage protein	NA	I6PD76	Cronobacter_phage	54.4	2.4e-114
VEE31095.1|2503683_2505090_-	Uncharacterised protein	NA	G8C7P4	Escherichia_phage	69.0	3.0e-186
VEE31097.1|2505092_2506394_-|terminase	phage terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	59.6	3.6e-149
VEE31100.1|2506374_2507469_-|terminase	terminase small subunit	terminase	A0A0U2RXW9	Escherichia_phage	80.2	2.9e-112
VEE31102.1|2507472_2507682_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE31105.1|2507659_2508592_-	Uncharacterised protein	NA	A0A1B1INP7	uncultured_Mediterranean_phage	54.9	1.4e-83
VEE31108.1|2508584_2509376_-	ParB-like nuclease	NA	R4TG31	Halovirus	40.2	2.8e-48
VEE31111.1|2509513_2510938_-	Rac prophage; potassium transporter subunit	NA	NA	NA	NA	NA
VEE31114.1|2511108_2511573_-|lysis	lysis protein	lysis	A0A0K2FJD0	Enterobacteria_phage	92.1	9.0e-71
VEE31117.1|2511569_2512067_-	phage lysozome	NA	M1FJA0	Enterobacteria_phage	97.0	3.2e-90
VEE31120.1|2512066_2512282_-|lysis	phage lysis protein	lysis	A5LH82	Enterobacteria_phage	94.4	1.3e-32
VEE31123.1|2512533_2512929_-	tolA protein (fragment) of prophage	NA	NA	NA	NA	NA
VEE31126.1|2513079_2513508_-	TolA protein (fragment) of prophage	NA	NA	NA	NA	NA
VEE31129.1|2514552_2515095_-	antitermination protein	NA	A0A0U2S606	Escherichia_phage	75.7	2.9e-76
VEE31132.1|2515091_2515382_-	phage protein	NA	A0A0U2KD41	Escherichia_phage	87.5	3.7e-46
VEE31135.1|2515381_2515981_-	phage protein	NA	A0A0U2RT94	Escherichia_phage	91.5	3.2e-105
VEE31138.1|2516449_2516605_-	putative host cell-killing modulation protein	NA	A0A0U2QV81	Escherichia_phage	94.1	1.9e-17
VEE31141.1|2516676_2516964_-	toxin of the RelE-RelB toxin-antitoxin system	NA	A0A2H4JBF4	uncultured_Caudovirales_phage	66.0	1.4e-29
VEE31144.1|2516963_2517203_-	antitoxin of the RelE-RelB toxin-antitoxin system and transcriptional repressor of relBEF	NA	A0A2H4JBG1	uncultured_Caudovirales_phage	54.4	1.6e-18
VEE31147.1|2517735_2518068_+	Qin prophage protein	NA	NA	NA	NA	NA
VEE31149.1|2518504_2519845_-|integrase,transposase	putative integrase/transposase	integrase,transposase	NA	NA	NA	NA
VEE31152.1|2520641_2521841_+	inner membrane transport protein YdhP	NA	NA	NA	NA	NA
VEE31154.1|2521852_2522545_+	cation transport protein chaC	NA	NA	NA	NA	NA
VEE31156.1|2522541_2523423_+	transcriptional regulator	NA	NA	NA	NA	NA
VEE31159.1|2523553_2524831_-	Predicted membrane protein (DUF2254)	NA	NA	NA	NA	NA
VEE31161.1|2524894_2526892_-	secondary glycine betaine transporter	NA	A0A2I7QNT1	Vibrio_phage	26.2	3.3e-21
VEE31163.1|2527232_2527655_-	putative prophage protein	NA	A0A0U2QQN3	Escherichia_phage	88.5	4.8e-63
VEE31165.1|2527695_2528766_-	replication protein	NA	A0A088CD36	Shigella_phage	64.6	4.7e-62
VEE31168.1|2528837_2529263_-	phage regulatory protein	NA	NA	NA	NA	NA
VEE31171.1|2529246_2529528_-	putative antirepressor protein Cro	NA	K7PHA1	Enterobacteria_phage	72.6	8.5e-24
VEE31175.1|2529628_2530048_+	putative phage repressor protein CI	NA	K7PK07	Enterobacteria_phage	65.1	8.8e-25
VEE31178.1|2530302_2530437_+	Rac prophage protein	NA	NA	NA	NA	NA
VEE31181.1|2530447_2530603_+	Rac prophage; predicted protein	NA	M4QQ57	Salicola_phage	55.3	6.1e-08
VEE31184.1|2530599_2531211_-	prophage CP-933R superinfection exclusion protein	NA	NA	NA	NA	NA
VEE31187.1|2531529_2531751_+	FtsZ inhibitor protein	NA	A0A0U2RTC4	Escherichia_phage	98.6	2.0e-36
VEE31190.1|2531750_2531921_+	Rac prophage; zinc-binding protein	NA	A0A0U2SHB5	Escherichia_phage	71.4	3.6e-17
VEE31193.1|2531995_2532271_+	putative bacteriophage protein	NA	A0A0U2QW85	Escherichia_phage	96.7	1.4e-42
VEE31196.1|2532372_2534973_+	exonuclease VIII	NA	A0A0U2I1R6	Escherichia_phage	63.5	3.9e-248
VEE31199.1|2534965_2535775_+	recombination and repair protein RecT	NA	A0A1P8DTF2	Proteus_phage	71.1	3.4e-105
VEE31202.1|2536018_2536228_+	gydaC	NA	A0A0U2QL97	Escherichia_phage	98.4	6.1e-27
VEE31205.1|2536306_2536522_+	excisionase	NA	A0A0U2RY08	Escherichia_phage	100.0	1.8e-37
VEE31208.1|2536523_2537759_+|integrase	phage integrase	integrase	A0A0U2JGI6	Escherichia_phage	98.8	5.5e-240
VEE31211.1|2537810_2538746_+|tRNA	C32 tRNA thiolase	tRNA	A0A0U2S5Z2	Escherichia_phage	98.8	5.9e-146
VEE31214.1|2538874_2540248_-	ATP-independent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	33.1	6.6e-53
VEE31217.1|2540277_2540451_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE31220.1|2540725_2541709_-	zinc transport protein	NA	NA	NA	NA	NA
VEE31223.1|2541963_2543196_+	putative signaling protein	NA	A0A127AWB9	Bacillus_phage	39.5	3.1e-17
2548794:2548809	attR	TTTTTATTGCTGCGAT	NA	NA	NA	NA
>prophage 7
LR134295	Escherichia coli strain NCTC9080 genome assembly, chromosome: 1	4722738	3117841	3164754	4722738	integrase,capsid,lysis,coat,transposase,terminase,portal,head,tail	Enterobacteria_phage(57.41%)	65	3138301:3138316	3166462:3166477
VEE32664.1|3117841_3119698_-|tail	tail fiber protein	tail	X2KTY7	Enterobacteria_phage	61.2	1.4e-05
VEE32666.1|3119834_3120572_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE32668.1|3121133_3121733_-	outer membrane precursor Lom	NA	A0A0P0ZCF6	Stx2-converting_phage	98.5	3.7e-109
VEE32670.1|3121799_3125198_-	Host specificity protein J	NA	K7PKJ2	Enterobacteria_phage	90.7	0.0e+00
VEE32672.1|3125258_3125831_-|tail	phage tail assembly protein	tail	A0A2R9YJH6	Escherichia_phage	98.9	1.5e-83
VEE32674.1|3125827_3126571_-|tail	putative tail fiber component K of prophage	tail	K7PLW1	Enterobacteria_phage	97.6	5.9e-149
VEE32676.1|3126576_3127275_-|tail	phage minor tail protein	tail	A0A0K2FJ01	Enterobacteria_phage	100.0	2.3e-134
VEE32678.1|3127274_3127604_-|tail	Minor tail protein M	tail	A0A0K2FIE9	Enterobacteria_phage	100.0	9.6e-59
VEE32680.1|3127600_3130162_-|tail	tail component of prophage	tail	A0A0K2FI43	Enterobacteria_phage	91.9	0.0e+00
VEE32682.1|3130154_3130589_-|tail	minor tail protein T	tail	A0A0K2FJB3	Enterobacteria_phage	100.0	6.9e-65
VEE32684.1|3130570_3130993_-|tail	phage minor tail protein	tail	A0A0K2FIQ8	Enterobacteria_phage	100.0	6.7e-73
VEE32686.1|3131008_3131749_-|tail	Major tail protein V	tail	A0A2I6TC77	Escherichia_phage	98.4	4.3e-131
VEE32688.1|3131756_3132152_-|tail	phage minor tail protein	tail	A0A2R9YJI2	Escherichia_phage	97.7	5.5e-69
VEE32690.1|3132148_3132727_-|tail	minor tail protein	tail	A0A2R9YJK4	Escherichia_phage	98.4	6.6e-79
VEE32692.1|3132738_3133092_-|capsid	minor capsid protein	capsid	A0A0K2FJB7	Enterobacteria_phage	100.0	2.0e-62
VEE32694.1|3133103_3133502_-	phage DNA packaging protein	NA	A0A0K2FIR1	Enterobacteria_phage	100.0	3.1e-64
VEE32696.1|3133543_3134569_-|head,coat	phage major head protein (major coat protein)	head,coat	C6ZCY2	Enterobacteria_phage	99.4	1.0e-191
VEE32698.1|3134624_3134957_-	Head decoration protein from bacteriophage origin	NA	C6ZCY1	Enterobacteria_phage	100.0	2.2e-55
VEE32700.1|3134966_3136286_-|capsid	minor capsid protein C from bacteriophage origin	capsid	A0A2I6TC87	Escherichia_phage	98.2	6.9e-233
VEE32702.1|3136266_3137868_-|capsid,portal	phage portal protein (minor capsid protein)	capsid,portal	A0A0K2FJC0	Enterobacteria_phage	98.7	3.6e-308
VEE32704.1|3137864_3138071_-|head,tail	head-to-tail joining protein W	head,tail	A0A2R9YJL2	Escherichia_phage	100.0	5.8e-30
VEE32706.1|3138067_3139993_-|terminase	phage terminase large subunit	terminase	A0A0K2FJ14	Enterobacteria_phage	99.7	0.0e+00
3138301:3138316	attL	GCTCTTCAGCAGTCAG	NA	NA	NA	NA
VEE32708.1|3139967_3140513_-	prophage qsr' DNA packaging protein NU1-like protein	NA	A0A0K2FIG2	Enterobacteria_phage	99.4	4.7e-95
VEE32710.1|3141193_3141604_+	Qin prophage	NA	C6ZCX4	Enterobacteria_phage	77.8	2.7e-55
VEE32712.1|3141906_3142431_-	Rha protein	NA	G8C7W4	Escherichia_phage	94.2	4.5e-87
VEE32714.1|3142633_3142786_-	bacteriophage protein (Gene 65)	NA	Q716B2	Shigella_phage	98.0	6.2e-21
VEE32716.1|3142773_3143253_-	Rz endopeptidase from lambdoid prophage DLP12	NA	Q9AZ06	Salmonella_phage	92.3	2.4e-71
VEE32718.1|3143237_3143735_-	phage lysozome	NA	A0A1B5FP97	Escherichia_phage	97.6	4.2e-90
VEE32720.1|3143734_3143950_-|lysis	phage lysis protein	lysis	A5LH82	Enterobacteria_phage	98.6	1.2e-33
VEE32722.1|3144391_3144868_-	araC-type regulatory protein from bacteriophage origin	NA	NA	NA	NA	NA
VEE32724.1|3145021_3145183_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE32726.1|3145219_3146179_-	putative pathogenicity island protein	NA	NA	NA	NA	NA
VEE32728.1|3146371_3146704_+	lipoprotein	NA	A0A1W6JNX6	Morganella_phage	55.7	8.2e-26
VEE32730.1|3146714_3147092_-|transposase	IS1 transposase	transposase	Q71TF0	Escherichia_phage	100.0	1.3e-67
VEE32732.1|3147136_3147412_-|transposase	IS1 transposase	transposase	NA	NA	NA	NA
VEE32734.1|3147565_3148516_-	magnesium and cobalt transport protein CorA	NA	NA	NA	NA	NA
VEE32736.1|3148885_3149200_+	protein	NA	NA	NA	NA	NA
VEE32738.1|3149228_3149504_+|transposase	IS1 transposase	transposase	NA	NA	NA	NA
VEE32740.1|3149548_3149926_+|transposase	IS1 transposase	transposase	Q71TF0	Escherichia_phage	100.0	1.3e-67
VEE32742.1|3150301_3150679_-	putative antitermination protein Q-like protein; DLP12 prophage	NA	Q777W5	Enterobacteria_phage	84.2	2.1e-54
VEE32744.1|3150901_3151264_-	endodeoxyribonuclease RUS	NA	K7PM48	Enterobacteria_phage	97.4	2.5e-60
VEE32746.1|3151260_3151551_-	DLP12 prophage	NA	K7PGZ6	Enterobacteria_phage	94.8	4.3e-47
VEE32748.1|3151543_3151714_-	prophage protein NinE	NA	K7P7K0	Enterobacteria_phage	67.9	1.5e-12
VEE32750.1|3151713_3152169_-	DLP12 prophage; DNA base-flipping protein	NA	I6PD71	Cronobacter_phage	68.2	3.7e-61
VEE32752.1|3152375_3152576_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE32754.1|3153205_3153700_-	Uncharacterised protein	NA	NA	NA	NA	NA
VEE32756.1|3153846_3154020_-	Ren protein from phage origin	NA	M1FPD5	Enterobacteria_phage	85.5	2.3e-19
VEE32758.1|3154016_3154718_-	replication protein P of bacteriophage	NA	M1FJ72	Enterobacteria_phage	97.4	4.6e-127
VEE32760.1|3154714_3155644_-	replication protein O	NA	K7P7F0	Enterobacteria_phage	68.3	1.0e-110
VEE32762.1|3155730_3156270_-	bacteriophage regulatory protein CII	NA	M9NZI6	Enterobacteria_phage	66.1	3.4e-61
VEE32764.1|3156339_3156570_-	Cro	NA	A0A2H4FNF3	Salmonella_phage	68.0	1.5e-21
VEE32766.1|3156608_3157364_+	Regulatory protein CI from bacteriophage origin	NA	Q76H56	Enterobacteria_phage	75.0	1.4e-92
VEE32768.1|3157443_3158289_+	Protein rexA	NA	M1FPD4	Enterobacteria_phage	47.7	1.9e-63
VEE32770.1|3158303_3158747_+	Uncharacterised protein	NA	M1FPN8	Enterobacteria_phage	49.3	6.7e-31
VEE32772.1|3159223_3159430_+	prophage Kil protein	NA	K7P6H3	Enterobacteria_phage	85.3	3.2e-28
VEE32774.1|3159505_3159802_+	host-nuclease inhibitor protein Gam	NA	A0A1I9LJN1	Stx_converting_phage	99.0	3.6e-49
VEE32776.1|3159807_3160593_+	bacteriophage recombination protein	NA	A0A1I9LJN0	Stx_converting_phage	100.0	6.3e-149
VEE32778.1|3160589_3161270_+	exonuclease	NA	A0A0N6WET1	Escherichia_phage	98.7	1.3e-131
VEE32780.1|3161266_3161449_+	phage protein	NA	A0A0N7CHV0	Escherichia_phage	98.3	1.3e-28
VEE32782.1|3161421_3161613_+	phage protein	NA	A0A0P0ZC67	Stx2-converting_phage	100.0	7.3e-27
VEE32784.1|3161689_3161905_+	ybl17	NA	A0A1I9LJM7	Stx_converting_phage	100.0	1.0e-32
VEE32786.1|3162003_3162225_+	putative C4-type zinc finger protein	NA	A0A0K2FI84	Escherichia_phage	100.0	2.9e-35
VEE32788.1|3162435_3162585_-	putative transmembrane protein	NA	NA	NA	NA	NA
VEE32790.1|3163280_3163448_+	Uncharacterised protein	NA	A5VWB7	Enterobacteria_phage	98.2	2.9e-27
VEE32792.1|3163683_3164754_+|integrase	putative integrase	integrase	K7P6P6	Enterobacteria_phage	100.0	3.9e-202
3166462:3166477	attR	GCTCTTCAGCAGTCAG	NA	NA	NA	NA
>prophage 8
LR134295	Escherichia coli strain NCTC9080 genome assembly, chromosome: 1	4722738	4064323	4085604	4722738	integrase,transposase	Stx2-converting_phage(33.33%)	20	4084162:4084206	4094557:4094601
VEE34401.1|4064323_4064704_+|transposase	transposase	transposase	A0A0P0ZBP6	Stx2-converting_phage	99.2	7.1e-66
VEE34403.1|4064700_4065048_+	prophage CP-933O IS protein	NA	A0A0P0ZBY2	Stx2-converting_phage	100.0	2.2e-61
VEE34405.1|4065097_4066483_+|transposase	transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	87.5	2.8e-253
VEE34407.1|4066721_4068080_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA	NA
VEE34409.1|4068830_4069088_-	Biofilm development protein YmgB/AriR	NA	NA	NA	NA	NA
VEE34411.1|4069211_4069322_+	Uncharacterised protein	NA	NA	NA	NA	NA
VEE34413.1|4069849_4070059_-|transposase	IS1 transposase	transposase	NA	NA	NA	NA
VEE34415.1|4070838_4071360_+	RNA polymerase sigma factor	NA	NA	NA	NA	NA
VEE34417.1|4071356_4072310_+	iron(III) dicitrate sensor protein	NA	NA	NA	NA	NA
VEE34419.1|4072396_4074721_+	iron(III) dicitrate TonB-dependent receptor	NA	NA	NA	NA	NA
VEE34421.1|4074765_4075668_+	iron-dicitrate transporter substrate-binding subunit	NA	NA	NA	NA	NA
VEE34423.1|4075664_4076663_+	iron(III) dicitrate transport system, permease protein	NA	NA	NA	NA	NA
VEE34425.1|4076659_4077616_+	iron-dicitrate transporter subunit FecD	NA	A0A2H4IY97	uncultured_Caudovirales_phage	26.1	1.1e-17
VEE34427.1|4077616_4078384_+	iron(III) dicitrate transport system, ATP-binding protein	NA	G3M9Y6	Bacillus_virus	24.8	6.4e-13
VEE34429.1|4078922_4079198_-	KpLE2 phage-like element	NA	NA	NA	NA	NA
VEE34431.1|4079848_4081372_-	reverse transcriptase-like protein from prophage or plasmid	NA	A0A0U4J920	Pseudomonas_phage	31.8	3.7e-44
VEE34433.1|4081963_4082203_-	IS911 orfA	NA	Q716C2	Shigella_phage	100.0	1.5e-29
VEE34435.1|4082415_4082715_-|transposase	transposase Orf1 of IS3 family IS element	transposase	Q716C1	Shigella_phage	98.0	3.9e-43
VEE34437.1|4083689_4083965_-|integrase	phage integrase	integrase	Q7M297	Enterobacteria_phage	51.1	5.1e-21
4084162:4084206	attL	GATGGTGCCGAAGGCCGGACTCGAACCGGCACGTATTTCTACGGT	NA	NA	NA	NA
VEE34439.1|4084326_4085604_+|integrase	integrase	integrase	NA	NA	NA	NA
VEE34439.1|4084326_4085604_+|integrase	integrase	integrase	NA	NA	NA	NA
4094557:4094601	attR	GATGGTGCCGAAGGCCGGACTCGAACCGGCACGTATTTCTACGGT	NA	NA	NA	NA
