assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900636595.1_42925_A01	LR134295	Escherichia coli strain NCTC9080 genome assembly, chromosome: 1	1	995236-995629	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG,c2c9_V-U4,RT	Unclear	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACC	28,28,28	0	0	NA	NA	I-E:I-E:I-E	6,6,6	6	Unclear	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG,c2c9_V-U4,RT	NA|47aa|up_1|LR134295.1_993945_994086_-,NA	NA|434aa|up_9|LR134295.1_984642_985944_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|LR134295.1_985991_988226_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|LR134295.1_988303_988552_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|LR134295.1_988551_988887_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|LR134295.1_988957_989749_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|LR134295.1_989976_991614_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|LR134295.1_991701_993000_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|LR134295.1_993059_993932_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|LR134295.1_993945_994086_-	NA	NA|224aa|up_0|LR134295.1_994224_994896_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|LR134295.1_996268_997747_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|LR134295.1_997773_999051_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|LR134295.1_999369_1000155_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|LR134295.1_1000224_1001679_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|LR134295.1_1001700_1003110_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|LR134295.1_1003087_1003867_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|LR134295.1_1003863_1004724_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|LR134295.1_1004871_1005447_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|LR134295.1_1005463_1005724_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|LR134295.1_1005714_1006986_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCA_900636595.1_42925_A01	LR134295	Escherichia coli strain NCTC9080 genome assembly, chromosome: 1	2	1021179-1022366	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG,c2c9_V-U4,RT	Type I-E	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	17,19,19	19	TypeI-E	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG,c2c9_V-U4,RT	NA,NA	NA|571aa|up_9|LR134295.1_1009543_1011256_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|LR134295.1_1011329_1012064_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3|889aa|up_7|LR134295.1_1012422_1015089_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|503aa|up_6|LR134295.1_1015503_1017012_+	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cse2gr11|161aa|up_5|LR134295.1_1017004_1017487_+	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|364aa|up_4|LR134295.1_1017499_1018591_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|225aa|up_3|LR134295.1_1018593_1019268_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas6e|200aa|up_2|LR134295.1_1019254_1019854_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|306aa|up_1|LR134295.1_1019869_1020787_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|95aa|up_0|LR134295.1_1020788_1021073_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|LR134295.1_1022386_1023424_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|LR134295.1_1023675_1024584_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|LR134295.1_1024585_1026013_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|LR134295.1_1026012_1026618_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|LR134295.1_1026667_1026991_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|LR134295.1_1027184_1027496_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|LR134295.1_1027514_1028225_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|LR134295.1_1028224_1028704_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|LR134295.1_1028700_1029750_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|LR134295.1_1029730_1030492_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_900636595.1_42925_A01	LR134295	Escherichia coli strain NCTC9080 genome assembly, chromosome: 1	3	1519552-1519669	3	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG,c2c9_V-U4,RT	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG,c2c9_V-U4,RT	NA,NA	NA|300aa|up_9|LR134295.1_1509035_1509935_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_8|LR134295.1_1510127_1511318_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_7|LR134295.1_1511314_1512574_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_6|LR134295.1_1512563_1514192_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_5|LR134295.1_1514464_1515823_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_4|LR134295.1_1515827_1516904_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|69aa|up_3|LR134295.1_1516945_1517152_-	PRK09729, PRK09729, hypothetical protein; Provisional	NA|217aa|up_2|LR134295.1_1517366_1518017_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|LR134295.1_1518070_1518325_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|LR134295.1_1518324_1519455_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|LR134295.1_1519688_1521974_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|LR134295.1_1522669_1526422_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|LR134295.1_1526549_1527272_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|LR134295.1_1527418_1530046_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|LR134295.1_1530194_1531883_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|LR134295.1_1531879_1532503_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_6|LR134295.1_1532646_1537041_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|LR134295.1_1537041_1538691_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|LR134295.1_1538695_1539472_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|LR134295.1_1539545_1540730_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCA_900636595.1_42925_A01	LR134295	Escherichia coli strain NCTC9080 genome assembly, chromosome: 1	4	2186020-2186143	4	CRISPRCasFinder	no	DEDDh	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG,c2c9_V-U4,RT	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG,c2c9_V-U4,RT	NA,NA	NA|79aa|up_9|LR134295.1_2174926_2175163_-	PRK15396, PRK15396, major outer membrane lipoprotein	NA|471aa|up_8|LR134295.1_2175473_2176886_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_7|LR134295.1_2177442_2177652_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_6|LR134295.1_2178107_2178734_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_5|LR134295.1_2178754_2180857_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_4|LR134295.1_2180869_2181508_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_3|LR134295.1_2181571_2182240_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_2|LR134295.1_2182236_2183022_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|255aa|up_1|LR134295.1_2183073_2183838_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_0|LR134295.1_2183849_2185454_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|419aa|down_0|LR134295.1_2186457_2187714_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|LR134295.1_2187754_2189128_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|LR134295.1_2189342_2189984_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|LR134295.1_2190023_2191172_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|LR134295.1_2191462_2192674_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|LR134295.1_2192786_2193719_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|LR134295.1_2193715_2194741_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|390aa|down_7|LR134295.1_2195294_2196464_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_8|LR134295.1_2196698_2197280_-	PRK10543, PRK10543, superoxide dismutase [Fe]	NA|272aa|down_9|LR134295.1_2197407_2198223_-	pfam00877, NLPC_P60, NlpC/P60 family
GCA_900636595.1_42925_A01	LR134295	Escherichia coli strain NCTC9080 genome assembly, chromosome: 1	7	3166238-3166382	6	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG,c2c9_V-U4,RT	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG,c2c9_V-U4,RT	NA|72aa|up_5|LR134295.1_3161689_3161905_+,NA|50aa|up_3|LR134295.1_3162435_3162585_-,NA|56aa|up_2|LR134295.1_3163280_3163448_+,NA	NA|262aa|up_9|LR134295.1_3159807_3160593_+	TIGR01913, Uncharacterized_protein_UU154, phage recombination protein Bet	NA|227aa|up_8|LR134295.1_3160589_3161270_+	pfam09588, YqaJ, YqaJ-like viral recombinase domain	NA|61aa|up_7|LR134295.1_3161266_3161449_+	pfam07026, DUF1317, Protein of unknown function (DUF1317)	NA|64aa|up_6|LR134295.1_3161421_3161613_+	pfam07131, DUF1382, Protein of unknown function (DUF1382)	NA|72aa|up_5|LR134295.1_3161689_3161905_+	NA	NA|74aa|up_4|LR134295.1_3162003_3162225_+	PHA00080, PHA00080, DksA-like zinc finger domain containing protein	NA|50aa|up_3|LR134295.1_3162435_3162585_-	NA	NA|56aa|up_2|LR134295.1_3163280_3163448_+	NA	NA|357aa|up_1|LR134295.1_3163683_3164754_+	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|428aa|up_0|LR134295.1_3164888_3166172_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|LR134295.1_3166405_3168667_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|LR134295.1_3168849_3170283_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|LR134295.1_3170358_3171411_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|LR134295.1_3171594_3172548_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|LR134295.1_3172588_3173584_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|LR134295.1_3173738_3174557_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|LR134295.1_3174557_3175616_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|LR134295.1_3175618_3176308_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|LR134295.1_3176307_3177081_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|LR134295.1_3177246_3177396_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCA_900636595.1_42925_A01	LR134295	Escherichia coli strain NCTC9080 genome assembly, chromosome: 1	8	3402302-3402398	7	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG,c2c9_V-U4,RT	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,DinG,c2c9_V-U4,RT	NA,NA	NA|231aa|up_9|LR134295.1_3394097_3394790_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|LR134295.1_3395009_3395552_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|LR134295.1_3396022_3396889_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|LR134295.1_3396890_3397103_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|LR134295.1_3397210_3397732_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|LR134295.1_3397767_3399153_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|LR134295.1_3399326_3399821_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|LR134295.1_3399823_3400546_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|LR134295.1_3400663_3401173_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|LR134295.1_3401169_3402237_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|LR134295.1_3402431_3403325_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|LR134295.1_3403321_3404137_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|LR134295.1_3404147_3405407_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|LR134295.1_3405416_3407084_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|LR134295.1_3407400_3408450_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|LR134295.1_3408471_3409707_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|LR134295.1_3409717_3410503_+	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|382aa|down_7|LR134295.1_3410730_3411876_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|LR134295.1_3411897_3413199_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|LR134295.1_3413255_3414617_-	PRK08044, PRK08044, allantoinase AllB
