assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_900636525.1_42685_G01	LR134288	Streptococcus milleri strain NCTC11169 genome assembly, chromosome: 1	1	864019-864581	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas9,cas1,cas2,csn2	cas3,csa3,DinG,cas9,cas1,cas2,csn2,WYL,PD-DExK,csm6,DEDDh	Type II-C,Type II-B,Type II-A	GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC,GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC,GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	36,36,36	0	0	NA	NA	NA:NA:NA	8,8,8	8	TypeII-C,TypeII-B,TypeII-A	cas3,csa3,DinG,cas9,cas1,cas2,csn2,WYL,PD-DExK,csm6,DEDDh	NA,NA	NA|288aa|up_9|LR134288.1_850808_851672_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|211aa|up_8|LR134288.1_851727_852360_+	COG3142, CutC, Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]	NA|224aa|up_7|LR134288.1_852372_853044_+	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|580aa|up_6|LR134288.1_853139_854879_+	PRK10789, PRK10789, SmdA family multidrug ABC transporter permease/ATP-binding protein	NA|581aa|up_5|LR134288.1_854881_856624_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|424aa|up_4|LR134288.1_856653_857925_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	cas9|1125aa|up_3|LR134288.1_858136_861511_+	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9	cas1|304aa|up_2|LR134288.1_861671_862583_+	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas2|108aa|up_1|LR134288.1_862582_862906_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|348aa|up_0|LR134288.1_862902_863946_+	cd12217, Stu0660_Csn2, Stu0660-like CRISPR/Cas system-associated protein Csn2	NA|772aa|down_0|LR134288.1_864710_867026_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|113aa|down_1|LR134288.1_867276_867615_+	PRK09263, PRK09263, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|59aa|down_2|LR134288.1_867811_867988_+	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|127aa|down_3|LR134288.1_868229_868610_-	COG1970, MscL, Large-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]	NA|600aa|down_4|LR134288.1_868741_870541_+	PRK05667, dnaG, DNA primase; Validated	NA|371aa|down_5|LR134288.1_870543_871656_+	PRK09210, PRK09210, RNA polymerase sigma factor RpoD; Validated	NA|110aa|down_6|LR134288.1_871674_872004_+	COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]	NA|443aa|down_7|LR134288.1_872158_873487_+	pfam05525, Branch_AA_trans, Branched-chain amino acid transport protein	NA|237aa|down_8|LR134288.1_873624_874335_+	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	NA|188aa|down_9|LR134288.1_874348_874912_+	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB
GCA_900636525.1_42685_G01	LR134288	Streptococcus milleri strain NCTC11169 genome assembly, chromosome: 1	2	1010489-1010682	2	CRISPRCasFinder	no		cas3,csa3,DinG,cas9,cas1,cas2,csn2,WYL,PD-DExK,csm6,DEDDh	Orphan	TTTTGGTTTGTTCTATCCGCCCGGCGGACG	30	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,DinG,cas9,cas1,cas2,csn2,WYL,PD-DExK,csm6,DEDDh	NA|54aa|up_9|LR134288.1_1000780_1000942_-,NA|98aa|down_6|LR134288.1_1017182_1017476_-	NA|54aa|up_9|LR134288.1_1000780_1000942_-	NA	NA|437aa|up_8|LR134288.1_1000956_1002267_-	PRK12297, obgE, GTPase CgtA; Reviewed	NA|45aa|up_7|LR134288.1_1002324_1002459_-	pfam13253, DUF4044, Protein of unknown function (DUF4044)	NA|88aa|up_6|LR134288.1_1002602_1002866_-	COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]	NA|494aa|up_5|LR134288.1_1002909_1004391_-	PRK05270, PRK05270, UDP-glucose--hexose-1-phosphate uridylyltransferase	NA|393aa|up_4|LR134288.1_1004463_1005642_-	PRK05322, PRK05322, galactokinase; Provisional	NA|334aa|up_3|LR134288.1_1005883_1006885_+	cd01544, PBP1_GalR, ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism	NA|312aa|up_2|LR134288.1_1006887_1007823_+	PRK11886, PRK11886, bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA	NA|555aa|up_1|LR134288.1_1008201_1009866_-	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated	NA|186aa|up_0|LR134288.1_1009865_1010423_-	COG1956, COG1956, GAF domain-containing protein [Signal transduction mechanisms]	NA|873aa|down_0|LR134288.1_1010800_1013419_-	TIGR01363, pneumococcal_histidine_triad_A_protein, streptococcal histidine triad protein	NA|308aa|down_1|LR134288.1_1013427_1014351_-	cd01017, AdcA, Metal binding protein AdcA	NA|243aa|down_2|LR134288.1_1014494_1015223_-	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|173aa|down_3|LR134288.1_1015209_1015728_-	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|123aa|down_4|LR134288.1_1015924_1016293_-	PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed	NA|167aa|down_5|LR134288.1_1016363_1016864_-	PRK00099, rplJ, 50S ribosomal protein L10; Reviewed	NA|98aa|down_6|LR134288.1_1017182_1017476_-	NA	NA|41aa|down_7|LR134288.1_1017912_1018035_-	TIGR02044, HTH-type_transcriptional_regulator_CueR, Cu(I)-responsive transcriptional regulator	NA|294aa|down_8|LR134288.1_1018326_1019208_-	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional	NA|359aa|down_9|LR134288.1_1019262_1020339_-	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional
GCA_900636525.1_42685_G01	LR134288	Streptococcus milleri strain NCTC11169 genome assembly, chromosome: 1	3	1229465-1231943	3,2,2,3	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	csn2,cas2,cas1,cas9	cas3,csa3,DinG,cas9,cas1,cas2,csn2,WYL,PD-DExK,csm6,DEDDh	Type II-C,Type II-B,Type II-A	GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC,GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC,GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC,GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	36,36,36,36	1	1	1231746-1231775	LR134288.1_1797556-1797527	II-A:II-A:II-A:II-A	37,37,26,26	37	TypeII-C,TypeII-B,TypeII-A	cas3,csa3,DinG,cas9,cas1,cas2,csn2,WYL,PD-DExK,csm6,DEDDh	NA,NA	NA|321aa|up_9|LR134288.1_1217519_1218482_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|248aa|up_8|LR134288.1_1218500_1219244_-	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|259aa|up_7|LR134288.1_1219376_1220153_+	TIGR02494, PFLE_PFLC, glycyl-radical enzyme activating protein	NA|150aa|up_6|LR134288.1_1220185_1220635_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|279aa|up_5|LR134288.1_1220700_1221537_-	pfam12850, Metallophos_2, Calcineurin-like phosphoesterase superfamily domain	NA|1122aa|up_4|LR134288.1_1221628_1224994_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|234aa|up_3|LR134288.1_1225008_1225710_-	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|185aa|up_2|LR134288.1_1225843_1226398_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|651aa|up_1|LR134288.1_1226586_1228539_-	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed	NA|214aa|up_0|LR134288.1_1228531_1229173_-	cd02019, NK, Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars	csn2|221aa|down_0|LR134288.1_1232034_1232697_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|115aa|down_1|LR134288.1_1232686_1233031_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|289aa|down_2|LR134288.1_1233027_1233894_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1387aa|down_3|LR134288.1_1233893_1238054_-	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	NA|462aa|down_4|LR134288.1_1238766_1240152_-	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|148aa|down_5|LR134288.1_1240285_1240729_-	PRK07308, PRK07308, flavodoxin; Validated	NA|313aa|down_6|LR134288.1_1240880_1241819_+	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|90aa|down_7|LR134288.1_1241898_1242168_+	PRK01678, rpmE2, type B 50S ribosomal protein L31	NA|97aa|down_8|LR134288.1_1242297_1242588_-	cd02230, cupin_HP0902-like, Helicobacter pylori HP0902 and related proteins, cupin domain	NA|233aa|down_9|LR134288.1_1242613_1243312_-	cd14852, LD-carboxypeptidase, L,D-carboxypeptidase DacB and LdcB, and related proteins
